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revision 1.62 by edhill, Thu Jan 15 19:19:59 2004 UTC revision 1.250 by jmc, Fri Apr 5 21:10:55 2013 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
173  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
175      cpp_options=$1      cpp_options=$1
176      pkg=$2      pkg=$2
177      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
178      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
179      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
180      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
181  }  }
182    
183  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
184  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
185  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
186      cpp_options=$1      cpp_options=$1
187      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
188      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99  
189  }  }
190    
191  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 34  test_for_mpi_in_cpp_eeoptions() { Line 193  test_for_mpi_in_cpp_eeoptions() {
193  test_for_string_in_file() {  test_for_string_in_file() {
194      file=$1      file=$1
195      strng=$2      strng=$2
196      grep -i "$strng" $file > /dev/null 2>&1      grep "$strng" $file > /dev/null 2>&1
197      RETVAL=$?      RETVAL=$?
198      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
199          echo -n "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
200          grep -i "$strng" $file          grep -i "$strng" $file
201          return 1          exit 99
202      fi      fi
203      return 0      return 0
204  }  }
# Line 48  test_for_string_in_file() { Line 207  test_for_string_in_file() {
207  # the package list.  # the package list.
208  expand_pkg_groups() {  expand_pkg_groups() {
209      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
210      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
211          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
212          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
# Line 59  expand_pkg_groups() { Line 217  expand_pkg_groups() {
217              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
218                  matched=1                  matched=1
219                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
220                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
221                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
222              else              else
223                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
# Line 67  expand_pkg_groups() { Line 225  expand_pkg_groups() {
225          done          done
226          PACKAGES=$new_packages          PACKAGES=$new_packages
227          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
228            return $matched
229      else      else
230          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
231      fi      fi
232  }  }
233    
234  # Guess possible config options for this host  #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
235  find_possible_configs()  {  #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
236    check_for_broken_Ff()  {
237        #  Do we have defaults for $FS and/or $FS90 ?
238        tfs=f
239        tfs9=f90
240        if test "x$FS" != x ; then
241            tfs="$FS"
242        fi
243        if test "x$FS90" != x ; then
244            tfs9="$FS90"
245        fi
246    
247      tmp1=`uname`"_"`uname -m`      #  First check the ability to create a *.F/.f pair.
248      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat <<EOF >> genmake_hello.F
249      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`        program hello
250      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`        write(*,*) 'hi'
251      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`        stop
252      PLATFORM=$tmp2        end
253      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`  EOF
254      echo "  The platform appears to be:  $PLATFORM"      cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
       
     echo "test" > test  
     ln -s ./test link  
255      RETVAL=$?      RETVAL=$?
256      if test "x${RETVAL}" = x0 ; then      if test "x$RETVAL" != x0 ; then
257          LN="ln -s"          if test "x$FS" = x ; then
258      else              FS='for'
259          echo "Error: \"ln -s\" does not appear to work on this system!"              FS90='fr9'
260          echo "  For help, please contact <MITgcm-support@mitgcm.org>."              check_for_broken_Ff
261          exit 1          else
262                cat <<EOF 2>&1
263    ERROR: Your file system cannot distinguish between *.F and *.f files
264      (fails the "cp" test) and this program cannot find a suitable
265      replacement extension.  Please try a different build environment or
266      contact the <MITgcm-support@mitgcm.org> list for help.
267    
268    EOF
269                exit -1
270            fi
271            return
272      fi      fi
273      rm -f test link      rm -f genmake_hello.*
274    
275      if test "x$CPP" = x ; then      #  Check the ability of ${MAKE} and ${LN} to use the current set
276          CPP="cpp -traditional -P"      #  of extensions.
277        cat <<EOF >> genmake_hello.F
278          program hello
279          write(*,*) 'hi'
280          stop
281          end
282    EOF
283        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
284        cat <<EOF >> $MAKEFILE
285    .SUFFIXES:
286    .SUFFIXES: .$tfs .F
287    .F.$tfs:
288            $LN \$< \$@
289    EOF
290        $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
291        RETVAL=$?
292        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
293            if test "x$FS" = x ; then
294                FS='for'
295                FS90='fr9'
296                check_for_broken_Ff
297            else
298                echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
299                echo "       see simple makefile: '$MAKEFILE' (left here)"
300                echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
301                echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
302                echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
303                echo ""
304                exit -1
305                return
306            fi
307      fi      fi
308        rm -f genmake_hello.* $MAKEFILE
309        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
310    
311        #  If we make it here, use the extensions
312        FS=$tfs
313        FS90=$tfs9
314        return
315    }
316    
317      # makedepend is not always available  look_for_makedepend()  {
318    
319        #  The "original" makedepend is part of the Imake system that is
320        #  most often distributed with XFree86 or with an XFree86 source
321        #  package.  As a result, many machines (eg. generic Linux) do not
322        #  have a system-default "makedepend" available.  For those
323        #  systems, we have two fall-back options:
324        #
325        #    1) a makedepend implementation shipped with the cyrus-imapd
326        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
327        #    2) a local tools/xmakedepend shell script
328        #
329        #  So the choices are, in order:
330        #    1) use the user-specified program
331        #    2) use the local xmakedepend script (get all dependencies, but slower)
332        #    3) use a system-wide default
333        #    4) locally build and use the cyrus makedepend
334        #             (faster, but can miss some dependencies)
335        #
336        echo >> $LOGFILE
337        echo "running: look_for_makedepend()" >> $LOGFILE
338        if test "x${MAKEDEPEND}" != x ; then
339            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
340            RETVAL=$?
341            if test x"$RETVAL" = x0 ; then
342                build_cyrus_makedepend
343                RETVAL=$?
344                if test "x$RETVAL" != x0 ; then
345                    echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
346                    MAKEDEPEND=
347                fi
348            else
349                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
350                RETVAL=$?
351                if test "x$RETVAL" = x0 ; then
352                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
353                fi
354                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
355            fi
356        fi
357      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
358        which makedepend >& /dev/null          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
359        RETVAL=$?          #  echo 'MAKEFILE="'$MAKEFILE'"'
360        if test "x${RETVAL}" = x1 ; then          cat <<EOF >> $MAKEFILE
361           echo "    makedepend was not found. Using xmakedpend instead."  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
362           MAKEDEPEND='$(TOOLSDIR)/xmakedepend'  #
363        fi  #   Some "makedepend" implementations will die if they cannot
364    #   find a Makefile -- so this file is here to gives them an
365    #   empty one to find and parse.
366    EOF
367            cat <<EOF >> genmake_tc.f
368          program test
369          write(*,*) 'test'
370          stop
371          end
372    EOF
373            $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
374            RV1=$?
375            which makedepend > /dev/null 2>&1
376            RV2=$?
377            if test "x${RV2}" = x0 ; then
378                makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
379                RV3=$? ; loc_msg='not working.'
380            else RV3=$RV2 ; loc_msg='not found.'
381            fi
382            test -f $MAKEFILE  &&  rm -f $MAKEFILE
383            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
384            echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
385            if test "x${RV1}" = x0 ; then
386                MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
387                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
388            elif test "x${RV3}" = x0 ; then
389                echo "    local tools/xmakedepend not working. Use system-default makedepend"
390                MAKEDEPEND=makedepend
391                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392            else
393                echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
394                echo -n "    Try to build cyrus-makedepend ..."
395                #  Try to build the cyrus implementation
396                build_cyrus_makedepend
397                RETVAL=$?
398                if test "x$RETVAL" = x0 ; then
399                    echo "  Works"
400                else
401                    echo "  Fails" ; echo "" >> $LOGFILE
402                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
403                    echo ""
404                    exit -1
405                    return
406                fi
407            fi
408      fi      fi
409    }
410    
411      # look for possible fortran compilers  build_cyrus_makedepend()  {
412      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      echo >> $LOGFILE
413      p_FC=      echo "running: build_cyrus_makedepend()" >> $LOGFILE
414        rm -f ./genmake_cy_md
415        (
416            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
417                &&  ./configure > /dev/null 2>&1  \
418                &&  $MAKE > /dev/null 2>&1
419            if test -x ./makedepend.exe ; then
420                $LN ./makedepend.exe ./makedepend
421            fi
422            ./makedepend ifparser.c > /dev/null 2>&1  \
423                &&  echo "true"
424        ) > ./genmake_cy_md
425        grep true ./genmake_cy_md > /dev/null 2>&1
426        RETVAL=$?
427        rm -f ./genmake_cy_md
428        if test "x$RETVAL" = x0 ; then
429            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
430            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
431            return 0
432        else
433            echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
434            return 1
435        fi
436    }
437    
438    build_embed_encode()
439    {
440        printf "  building the embed-encode utility...  "
441        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
442            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
443                echo
444                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
445                echo
446                EMBED_SRC=f
447                return 1
448            fi
449            clist="cc gcc c89 $CC"
450            for ic in $clist ; do
451                comm="$ic -o encode_files encode_files.c"
452                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
453                RETVAL=$?
454                if test "x$RETVAL" = x0 ; then
455                    echo "OK"
456                    return 0
457                fi
458            done
459            echo
460            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
461            echo "      so it has been disabled"
462            echo
463            EMBED_SRC=f
464            return 1
465        fi
466        echo "OK"
467    }
468    
469    #  look for possible C compilers
470    look_for_C_compilers() {
471        echo >> $LOGFILE
472        echo "running: look_for_C_compilers()" >> $LOGFILE
473        rm -f ./genmake_hello.c  ./genmake_hello
474        cat >> genmake_hello.c << EOF
475    #include <stdio.h>
476    int main(int argc, char **argv) {
477      printf("Hello!\n");
478      return 0;
479    }
480    EOF
481        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
482        p_CC=
483      for c in $tmp ; do      for c in $tmp ; do
484          rm -f ./hello.f ./hello          COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
485          cat >> hello.f <<EOF          echo $COMM >> $LOGFILE
486            $COMM >> $LOGFILE 2>&1
487            RETVAL=$?
488            if test "x${RETVAL}" = x0 ; then
489                echo " $c test successful" >> $LOGFILE
490                p_CC="$p_CC $c"
491            fi
492        done
493        rm -f ./genmake_hello.c ./genmake_hello
494        if test "x${p_CC}" = x ; then
495            cat 1>&2 <<EOF
496    
497    Error: No C compilers were found in your path.  Please specify one using:
498    
499        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
500        2) the CC or MITGCM_CC environment variables.
501    
502    EOF
503            exit 1
504        else
505            echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
506            if test "x$CC" = x ; then
507                CC=`echo $p_CC | $AWK '{print $1}'`
508                echo "  Setting C compiler to: "$CC
509            fi
510        fi
511        echo " --> set CC='$CC'" >> $LOGFILE
512    }
513    
514    # Guess possible config options for this host
515    find_possible_optfile()  {
516    
517        echo >> $LOGFILE
518        echo "running: find_possible_optfile()" >> $LOGFILE
519        tmp1=`uname`"_"`uname -m`
520        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
521        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
522        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
523        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
524        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
525        PLATFORM=$tmp3
526        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
527        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
528        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
529    
530        #================================================================
531        #  look for possible FORTRAN compilers
532        echo "  look for possible FORTRAN compilers" >> $LOGFILE
533        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
534        p_FC=
535        rm -f ./genmake_hello.f
536        cat >> genmake_hello.f <<EOF
537        program hello        program hello
538        do i=1,3        do i=1,3
539          print *, 'hello world : ', i          print *, 'hello world : ', i
540        enddo        enddo
541        end        end
542  EOF  EOF
543          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
544            COMM="$f -o genmake_hello genmake_hello.f"
545            echo $COMM >> $LOGFILE
546            $COMM >> $LOGFILE 2>&1
547          RETVAL=$?          RETVAL=$?
548          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
549              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
550                p_FC="$p_FC $f"
551          fi          fi
552      done      done
553      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
554      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
555          cat 1>&2 <<EOF          cat 1>&2 <<EOF
556    
# Line 136  Error: No Fortran compilers were found i Line 558  Error: No Fortran compilers were found i
558    
559      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
560      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
561      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
562    
563  EOF  EOF
564          exit 1          exit 1
565      else      else
566          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
         if test "x$FC" = x ; then  
             FC=`echo $p_FC | $AWK '{print $1}'`  
         fi  
567      fi      fi
568    
569      for i in $p_FC ; do      #  Use the first of the compilers found in the current PATH
570          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i      #  that has a correctly-named optfile
571          if test -r $p_OF ; then      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
572              OPTFILE=$p_OF          for i in $p_FC ; do
573              echo "  The options file:  $p_OF"              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
574              echo "    appears to match so we'll use it."              if test -r $OPTFILE ; then
575              break                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
576                    break
577                fi
578            done
579        fi
580    
581        if test "x$OPTFILE" = x ; then
582            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
583            if test ! -r $OPTFILE ; then
584                 echo "  I looked for the file "$OPTFILE" but did not find it"
585          fi          fi
586      done      fi
587    
588      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
589          cat 1>&2 <<EOF          cat 1>&2 <<EOF
590    
# Line 172  Error: No options file was found in:  $R Line 600  Error: No options file was found in:  $R
600  EOF  EOF
601          exit 1          exit 1
602      fi      fi
       
 #     # look for possible MPI libraries  
 #     mpi_libs=  
 #     mpi_fort=`which mpif77 2>/dev/null`  
 #     RETVAL=$?  
 #     if test "x${RETVAL}" = x0 ; then  
 #       cat >>test.f <<EOF  
 #       PROGRAM HELLO  
 #       DO 10, I=1,10  
 #       PRINT *,'Hello World'  
 #    10 CONTINUE  
 #       STOP  
 #       END  
 # EOF  
 #       eval "$mpi_fort -showme test.f > out"  
 #       RETVAL=$?  
 #       if test "x${RETVAL}" = x0 ; then  
 #           a=`cat out`  
 #           for i in $a ; do  
 #               case $i in  
 #                   -*)  
 #                       mpi_libs="$mpi_libs $i" ;;  
 #               esac  
 #           done  
 #           echo "The MPI libs appear to be:"  
 #           echo "  "$mpi_libs  
 #       fi  
 #       rm -f test.f out  
 #     fi  
   
603  }  }
604    
605  #  Parse the package dependency information  #  Parse the package dependency information
# Line 210  get_pdepend_list()  { Line 608  get_pdepend_list()  {
608      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
609      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
610      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
611          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
612          > ./.pd_tmp          > ./.pd_tmp
613        RETVAL=$?
614        if test ! "x${RETVAL}" = x0 ; then
615          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
616          exit 1
617        fi
618      . ./.pd_tmp      . ./.pd_tmp
619      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
     echo -n "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/devel_HOWTO/  
   
 EOF  
   
     exit 1  
620  }  }
621    
622  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
623  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
624    
625        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
626        if test ! "x$FC_NAMEMANGLE" = x ; then
627            return 0
628        fi
629        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
630    
631      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
632        
633      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
634  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
635  EOF  EOF
636      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
637        echo ' '$COMM >> $LOGFILE
638        $COMM >> $LOGFILE 2>&1
639      RETVAL=$?      RETVAL=$?
640      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
641          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
642          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
643    
644  WARNING: C test compile fails   WARNING: C test compile fails
645  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
646  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
647  EOF  EOF
648          return 1          return 1
649      fi      fi
650      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
651      RETVAL=$?      RETVAL=$?
652      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
653          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
654          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
655    
656  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
657  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
658  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
659  EOF  EOF
660          return 1          return 1
661      fi      fi
662      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
663        subroutine tcall( string )        subroutine tcall( string )
664        character*(*) string        character*(*) string
665        call tsub( string )        call tsub( string )
666        end        end
667  EOF  EOF
668      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
669        echo ' '$COMM >> $LOGFILE
670        $COMM >> $LOGFILE 2>&1
671      RETVAL=$?      RETVAL=$?
672      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
673          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
674          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
675    
676  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
677  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
678  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
679  EOF  EOF
680          return 1          return 1
681      fi      fi
682      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
683      RETVAL=$?      RETVAL=$?
684      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
685          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
686          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
687    
688  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
689  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
690  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
691  EOF  EOF
692          return 1          return 1
693      fi      fi
# Line 395  EOF Line 713  EOF
713    
714      #  cleanup the testing files      #  cleanup the testing files
715      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
716    
717        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
718    }
719    
720  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
721        echo >> $LOGFILE
722        echo "running: check_HAVE_CLOC()" >> $LOGFILE
723      get_fortran_c_namemangling      get_fortran_c_namemangling
724      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
725  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 415  void FC_NAMEMANGLE(cloc) ( double *curti Line 736  void FC_NAMEMANGLE(cloc) ( double *curti
736   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
737  }  }
738  EOF  EOF
739      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
740        echo $COMM >> $LOGFILE
741        $COMM >> $LOGFILE 2>&1
742      RET_C=$?      RET_C=$?
743      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
744        program hello        program hello
745        Real*8 wtime        REAL*8 wtime
746        external cloc        external cloc
747        call cloc(wtime)        call cloc(wtime)
748        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
749        end program hello        end
750  EOF  EOF
751      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
752        echo $COMM >> $LOGFILE
753        $COMM >> $LOGFILE 2>&1
754      RET_F=$?      RET_F=$?
755      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
756      RETVAL=$?      RETVAL=$?
757      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
758          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
759      fi      fi
760      rm -f genmake_tc*      rm -f genmake_tc*
761        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
762  }  }
763    
764    check_HAVE_SIGREG()  {
765        if test ! "x$HAVE_SIGREG" = x ; then
766            return
767        fi
768        echo >> $LOGFILE
769        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
770        get_fortran_c_namemangling
771        cat <<EOF > genmake_tc_1.c
772    $FC_NAMEMANGLE
773    #include <stdlib.h>
774    #include <stdio.h>
775    #include <signal.h>
776    #include <errno.h>
777    #include <ucontext.h>
778    
779    int * ip;
780    
781    static void killhandler(
782        unsigned int sn, siginfo_t  si, struct ucontext *sc )
783    {
784        *ip = *ip + 1;
785        return;
786    }
787    
788    void FC_NAMEMANGLE(sigreg) (int * aip)
789    {
790        struct sigaction s;
791        ip = aip;
792        s.sa_flags = SA_SIGINFO;
793        s.sa_sigaction = (void *)killhandler;
794        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
795            printf("Sigaction returned error = %d\n", errno);
796            exit(0);
797        }
798        return;
799    }
800    EOF
801        COMM="$CC $CFLAGS -c genmake_tc_1.c"
802        echo $COMM >> $LOGFILE
803        $COMM >> $LOGFILE 2>&1
804        RET_C=$?
805        cat <<EOF > genmake_tc_2.$FS
806          program hello
807          integer anint
808          common /iv/ anint
809          external sigreg
810          call sigreg(anint)
811          end
812    EOF
813        cat genmake_tc_2.$FS >> $LOGFILE
814        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
815        echo $COMM >> $LOGFILE
816        $COMM >> $LOGFILE 2>&1
817        RETVAL=$?
818        if test "x$RETVAL" = x0 ; then
819            HAVE_SIGREG=t
820        fi
821        rm -f genmake_tc*
822        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
823    }
824    
825    check_HAVE_SETRLSTK()  {
826        if test ! "x$HAVE_SETRLSTK" = x ; then
827            return
828        fi
829        echo >> $LOGFILE
830        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
831        get_fortran_c_namemangling
832        cat <<EOF > genmake_tc_1.c
833    $FC_NAMEMANGLE
834    #include <sys/time.h>
835    #include <sys/resource.h>
836    #include <unistd.h>
837    void FC_NAMEMANGLE(setrlstk) ()
838    {
839        struct rlimit rls;
840        rls.rlim_cur = RLIM_INFINITY;
841        rls.rlim_max = RLIM_INFINITY;
842        setrlimit(RLIMIT_STACK, &rls);
843        return;
844    }
845    EOF
846        COMM="$CC $CFLAGS -c genmake_tc_1.c"
847        echo $COMM >> $LOGFILE
848        $COMM >> $LOGFILE 2>&1
849        RET_C=$?
850        cat <<EOF > genmake_tc_2.$FS
851          program hello
852          external setrlstk
853          call setrlstk()
854          end
855    EOF
856        cat genmake_tc_2.$FS >> $LOGFILE
857        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
858        echo $COMM >> $LOGFILE
859        $COMM >> $LOGFILE 2>&1
860        RETVAL=$?
861        if test "x$RETVAL" = x0 ; then
862            HAVE_SETRLSTK=t
863        fi
864        rm -f genmake_tc*
865        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
866    }
867    
868    check_HAVE_STAT()  {
869        echo >> $LOGFILE
870        echo "running: check_HAVE_STAT()" >> $LOGFILE
871        get_fortran_c_namemangling
872        cat <<EOF > genmake_tc_1.c
873    $FC_NAMEMANGLE
874    #include <stdio.h>
875    #include <stdlib.h>
876    #include <unistd.h>
877    #include <sys/stat.h>
878    #include <sys/types.h>
879    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
880    {
881        char name[512];
882        struct stat astat;
883    
884        name[0] = 'a'; name[1] = '\0';
885        if (! stat(name, &astat))
886            *nbyte = (int)(astat.st_size);
887        else
888            *nbyte = -1;
889    }
890    EOF
891        COMM="$CC $CFLAGS -c genmake_tc_1.c"
892        echo $COMM >> $LOGFILE
893        $COMM >> genmake_tc.log 2>&1
894        RET_C=$?
895        cat <<EOF > genmake_tc_2.$FS
896          program hello
897          integer nbyte
898          call tfsize(nbyte)
899          print *," HELLO WORLD", nbyte
900          end
901    EOF
902        cat genmake_tc_2.$FS >> $LOGFILE
903        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
904        echo $COMM >> $LOGFILE
905        $COMM >> genmake_tc.log 2>&1
906        RETVAL=$?
907        if test "x$RETVAL" = x0 ; then
908            HAVE_STAT=t
909        fi
910        rm -f genmake_tc*
911        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
912    }
913    
914  check_netcdf_libs()  {  check_netcdf_libs()  {
915        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
916            return
917        fi
918        echo >> $LOGFILE
919        echo "running: check_netcdf_libs()" >> $LOGFILE
920      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
921        program fgennc        program fgennc
922  #include "netcdf.inc"  #include "netcdf.inc"
923    EOF
924       #if test ! "x$MPI" = x ; then
925       #    echo '#include "mpif.h"' >> genmake_tnc.F
926       #fi
927        cat <<EOF >> genmake_tnc.F
928        integer iret, ncid, xid        integer iret, ncid, xid
929        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
930        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
# Line 450  check_netcdf_libs()  { Line 934  check_netcdf_libs()  {
934        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
935        end        end
936  EOF  EOF
937      $CPP genmake_tnc.F > genmake_tnc.f  \      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
938          &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1      cat genmake_tnc.F >> genmake_tnc.log
939        echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
940        RET_CPP=f
941        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
942        echo "$COMM" >> genmake_tnc.log
943        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
944        if test "x$RET_CPP" = xf ; then
945            echo "  WARNING: CPP failed to pre-process the netcdf test." \
946                >> genmake_tnc.log
947            echo "    Please check that \$INCLUDES is properly set." \
948                >> genmake_tnc.log
949        fi
950        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
951        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
952        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
953            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
954      RET_COMPILE=$?      RET_COMPILE=$?
955      test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1      cat genmake_tnc.log >> $LOGFILE
956      RETVAL=$?  
957      if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then      #EH3  Remove test program execution for machines that either disallow
958        #EH3  execution or cannot support it (eg. cross-compilers)
959        #EH3
960        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
961        #EH3 RETVAL=$?
962        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
963    
964        if test "x$RET_COMPILE" = x0 ; then
965          HAVE_NETCDF=t          HAVE_NETCDF=t
966            echo "check_netcdf: successful" >> $LOGFILE
967      else      else
968          cat genmake_tnc.log >> genmake_warnings          # try again with "-lnetcdf" added to the libs
969            echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
970            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
971            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
972            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
973            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
974                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
975                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
976            RET_COMPILE=$?
977            echo >> $LOGFILE
978            cat genmake_tnc.log >> $LOGFILE
979            if test "x$RET_COMPILE" = x0 ; then
980                LIBS="$LIBS -lnetcdf"
981                HAVE_NETCDF=t
982                echo "check_netcdf: successful" >> $LOGFILE
983            else
984            # try again with "-lnetcdff" added to the libs
985                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
986                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
987                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
988                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
989                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
990                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
991                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
992                RET_COMPILE=$?
993                echo >> $LOGFILE
994                cat genmake_tnc.log >> $LOGFILE
995                if test "x$RET_COMPILE" = x0 ; then
996                    LIBS="$LIBS -lnetcdff -lnetcdf"
997                    HAVE_NETCDF=t
998                    echo "check_netcdf: successful" >> $LOGFILE
999                fi
1000            fi
1001      fi      fi
1002      rm -f genmake_tnc*      rm -f genmake_tnc*
1003        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1004    }
1005    
1006    check_lapack_libs()  {
1007        if test ! "x$SKIP_LAPACK_CHECK" = x ; then
1008            return
1009        fi
1010        echo >> $LOGFILE
1011        echo "running: check_lapack_libs()" >> $LOGFILE
1012        cat <<EOF > genmake_tla.F
1013          program fgenla
1014          integer info
1015          integer ipiv( 2 )
1016          double precision ab( 4, 2 ), b( 2 )
1017          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1018          data b / 1., 1. /
1019          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1020          IF (info .NE. 0) write(*,*) 'Error:', info
1021          write(*,*) b
1022          end
1023    EOF
1024        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1025        cat genmake_tla.F >> genmake_tla.log
1026        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1027        RET_CPP=f
1028        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1029        echo "$COMM" >> genmake_tla.log
1030        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1031        if test "x$RET_CPP" = xf ; then
1032            echo "  WARNING: CPP failed to pre-process the lapack test." \
1033                >> genmake_tla.log
1034            echo "    Please check that \$INCLUDES is properly set." \
1035                >> genmake_tla.log
1036        fi
1037        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1038        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1039        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1040            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1041        RET_COMPILE=$?
1042        cat genmake_tla.log >> $LOGFILE
1043    
1044        # test program execution not always possible (see check_netcdf_libs)
1045        #
1046        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1047        #RETVAL=$?
1048        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1049    
1050        if test "x$RET_COMPILE" = x0 ; then
1051            HAVE_LAPACK=t
1052            echo "check_lapack: successful" >> $LOGFILE
1053        else
1054            # try again with "-llapack" added to the libs
1055            echo "==> try again with added '-llapack'" > genmake_tla.log
1056            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1057            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1058            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1059            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1060                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1061                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1062            RET_COMPILE=$?
1063            echo >> $LOGFILE
1064            cat genmake_tla.log >> $LOGFILE
1065            if test "x$RET_COMPILE" = x0 ; then
1066                LIBS="$LIBS -llapack"
1067                HAVE_LAPACK=t
1068                echo "check_lapack: successful" >> $LOGFILE
1069            else
1070            # try again with "-lf77blas -lcblas" added to the libs
1071                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1072                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1073                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1074                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1075                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1076                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1077                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1078                RET_COMPILE=$?
1079                echo >> $LOGFILE
1080                cat genmake_tla.log >> $LOGFILE
1081                if test "x$RET_COMPILE" = x0 ; then
1082                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1083                    HAVE_LAPACK=t
1084                    echo "check_lapack: successful" >> $LOGFILE
1085                else
1086                # try again with "-latlas" added to the libs
1087                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1088                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1089                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1090                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1091                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1092                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1093                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1094                    RET_COMPILE=$?
1095                    echo >> $LOGFILE
1096                    cat genmake_tla.log >> $LOGFILE
1097                    if test "x$RET_COMPILE" = x0 ; then
1098                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1099                        HAVE_LAPACK=t
1100                        echo "check_lapack: successful" >> $LOGFILE
1101                    fi
1102                fi
1103            fi
1104        fi
1105        rm -f genmake_tla*
1106        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1107    }
1108    
1109    check_HAVE_FLUSH()  {
1110        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1111            return
1112        fi
1113        echo >> $LOGFILE
1114        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1115        cat <<EOF > genmake_tflsh.$FS
1116          program fgenflsh
1117          integer iounit
1118          character*9 fname
1119          iounit = 26
1120          fname = 'tmp.tflsh'
1121          open(iounit,FILE=fname,STATUS='unknown')
1122          write(iounit,*) 'genmake_tflsh: hello'
1123          call flush(iounit)
1124          close(iounit)
1125          end
1126    EOF
1127        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1128        cat genmake_tflsh.$FS >> genmake_tflsh.log
1129        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1130    
1131        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1132        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1133        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1134            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1135        RET_COMPILE=$?
1136    
1137        if test "x$RET_COMPILE" = x0 ; then
1138            HAVE_FLUSH=t
1139            #cat genmake_tflsh.log >> $LOGFILE
1140            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1141        else
1142            HAVE_FLUSH=f
1143            cat genmake_tflsh.log >> $LOGFILE
1144        fi
1145        rm -f genmake_tflsh*
1146        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1147  }  }
1148    
1149    ###############################################################################
1150    #   Sequential part of script starts here
1151    ###############################################################################
1152    
1153  #  Set defaults here  #  Set defaults here
1154  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 471  PLATFORM= Line 1157  PLATFORM=
1157  LN=  LN=
1158  S64=  S64=
1159  KPP=  KPP=
1160  FC=  #FC=
1161  CPP=  #CC=gcc
1162    #CPP=
1163  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
1164  DEFINES=  DEFINES=
1165  PACKAGES=  PACKAGES=
1166  ENABLE=  ENABLE=
1167  DISABLE=  DISABLE=
1168  MAKEFILE=  # MAKEFILE=
1169  MAKEDEPEND=  # MAKEDEPEND=
1170  PDEPEND=  PKG_DEPEND=
1171  DUMPSTATE=t  PKG_GROUPS=
1172  PDEFAULT=  DUMPSTATE=f
1173  OPTFILE=  OPTFILE=
1174  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1175  FFLAGS=  FFLAGS=
1176  FOPTIM=  FOPTIM=
1177    FEXTRAFLAGS=
1178    USE_EXTENDED_SRC=
1179    EXTENDED_SRC_FLAG=
1180    GET_FC_VERSION=
1181  CFLAGS=  CFLAGS=
1182  KFLAGS1=  KFLAGS1=
1183  KFLAGS2=  KFLAGS2=
1184    #LDADD=
1185  LIBS=  LIBS=
1186  KPPFILES=  KPPFILES=
1187  NOOPTFILES=  NOOPTFILES=
1188  NOOPTFLAGS=  NOOPTFLAGS=
1189    MPI=
1190    MPIPATH=
1191    OMP=
1192    OMPFLAG=
1193    USE_R4=
1194    TS=
1195    PAPIS=
1196    PCLS=
1197    FOOLAD=
1198    PAPI=
1199    PCL=
1200    HPMT=
1201    GSL=
1202    DEVEL=
1203    HAVE_TEST_L=
1204    
1205    # comment this line out to enable lapack test
1206    SKIP_LAPACK_CHECK=t
1207    
1208  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1209  HAVE_SYSTEM=  HAVE_SYSTEM=
1210  HAVE_FDATE=  HAVE_FDATE=
1211  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1212  HAVE_CLOC=  HAVE_CLOC=
1213    # HAVE_SETRLSTK=
1214    HAVE_STAT=
1215  HAVE_NETCDF=  HAVE_NETCDF=
1216    HAVE_ETIME=
1217    IGNORE_TIME=
1218    HAVE_LAPACK=
1219    HAVE_FLUSH=
1220    
1221  MODS=  MODS=
1222  TOOLSDIR=  TOOLSDIR=
# Line 509  SOURCEDIRS= Line 1224  SOURCEDIRS=
1224  INCLUDEDIRS=  INCLUDEDIRS=
1225  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1226    
1227    #- local config file
1228    gm_local="genmake_local"
1229    
1230    G2ARGS=
1231    BASH=
1232  PWD=`pwd`  PWD=`pwd`
1233  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1234  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1235  THISHOSTNAME=`hostname`  EMBED_SRC=
1236    THISHOST=`hostname`
1237  THISCWD=`pwd`  THISCWD=`pwd`
1238  THISDATE=`date`  THISDATE=`date`
1239    THISUSER=`echo $USER`
1240    THISVER=
1241  MACHINE=`uname -a`  MACHINE=`uname -a`
1242  EXECUTABLE=  EXECUTABLE=
1243  EXEHOOK=  EXEHOOK=
1244  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1245  IEEE=  IEEE=
1246  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1247      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1248  fi  fi
1249    FS=
1250    FS90=
1251    
1252  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1253  AD_OPTFILE=  AD_OPTFILE=
# Line 538  FTL_TAF_FLAGS= Line 1262  FTL_TAF_FLAGS=
1262  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1263  TAMC_EXTRA=  TAMC_EXTRA=
1264    
   
1265  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1266  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1267  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1268    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1269    
1270  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1271  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1272  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1273  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1274  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1275  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1276    
1277  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1278  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1279  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1280  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA"
1281    
1282  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1283  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1284    
1285  cat <<EOF  cat <<EOF
1286    
1287  GENMAKE :  GENMAKE :
1288    
1289  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1290  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1291    or for more detail see the Developer's HOWTO manual at:
1292    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1293    
1294  EOF  EOF
1295    
1296    LOGFILE="genmake.log"
1297    #- clean-up previous genmake logfiles:
1298    rm -f genmake_state genmake_*optfile $LOGFILE
1299    
1300  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1301    
1302  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1303  #parse_options  #parse_options
1304  ac_prev=  ac_prev=
1305  for ac_option ; do  for ac_option in "$@" ; do
1306    
1307        G2ARGS="$G2ARGS \"$ac_option\""
1308    
1309      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1310      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 607  for ac_option ; do Line 1312  for ac_option ; do
1312          ac_prev=          ac_prev=
1313          continue          continue
1314      fi      fi
1315        
1316      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1317        
1318      case $ac_option in      case $ac_option in
1319            
1320          -help | --help | -h | --h)          -help | --help | -h | --h)
1321              usage ;;              usage ;;
1322            
1323          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1324              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1325          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1326              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1327          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1328              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1329            
1330          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1331              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1332          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1333              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1334            
1335          -pdepend | --pdepend)          -pdepend | --pdepend)
1336              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1337          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1338              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1339            
1340          -pdefault | --pdefault)          -pgroups | --pgroups)
1341              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1342          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1343              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1344            
1345          -make | --make | -m | --m)          -make | --make | -m | --m)
1346              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1347          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1348              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1349            
1350          -makefile | --makefile | -ma | --ma)          -bash | --bash)
1351                ac_prev=BASH ;;
1352            -bash=* | --bash=*)
1353                BASH=$ac_optarg ;;
1354    
1355            -makedepend | --makedepend | -md | --md)
1356                ac_prev=MAKEDEPEND ;;
1357            -makedepend=* | --makedepend=* | -md=* | --md=*)
1358                MAKEDEPEND=$ac_optarg ;;
1359    
1360            -makefile | --makefile | -mf | --mf)
1361              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1362          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1363              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1364            
1365          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1366              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1367              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1368              echo              echo
1369              usage              usage
1370              ;;              ;;
1371            
1372          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1373              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1374          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1375              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1376            
1377          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1378              ac_prev=MODS ;;              ac_prev=MODS ;;
1379          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1380              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1381            
1382          -disable | --disable)          -disable | --disable)
1383              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1384          -disable=* | --disable=*)          -disable=* | --disable=*)
1385              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1386            
1387          -enable | --enable)          -enable | --enable)
1388              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1389          -enable=* | --enable=*)          -enable=* | --enable=*)
1390              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1391            
1392          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1393              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1394          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 683  for ac_option ; do Line 1398  for ac_option ; do
1398  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1399  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1400  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1401                
1402            -cc | --cc)
1403                ac_prev=CC ;;
1404            -cc=* | --cc=*)
1405                CC=$ac_optarg ;;
1406    
1407          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1408              ac_prev=FC ;;              ac_prev=FC ;;
1409          -fc=* | --fc=*)          -fc=* | --fc=*)
1410              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1411            
1412            -fs | --fs)
1413                ac_prev=FS ;;
1414            -fs=* | --fs=*)
1415                FS=$ac_optarg ;;
1416    
1417            -fs90 | --fs90)
1418                ac_prev=FS90 ;;
1419            -fs90=* | --fs90=*)
1420                FS90=$ac_optarg ;;
1421    
1422            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1423                USE_R4=true ;;
1424    
1425          -ieee | --ieee)          -ieee | --ieee)
1426              IEEE=true ;;              IEEE=true ;;
1427          -noieee | --noieee)          -noieee | --noieee)
1428              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1429                    -devel | --devel)
1430  #       -jam | --jam)              IEEE=true ; DEVEL=true ;;
1431  #           JAM=1 ;;          -gsl | --gsl)
1432  #       -nojam | --nojam)              GSL=true ;;
1433  #           JAM=0 ;;  
1434                    -ts | --ts)
1435                TS=true ;;
1436            -papis | --papis)
1437                PAPIS=true ;;
1438            -pcls | --pcls)
1439                PCLS=true ;;
1440            -foolad | --foolad)
1441                FOOLAD=true ;;
1442            -papi | --papi)
1443                PAPI=true ;;
1444            -pcl | --pcl)
1445                PCL=true ;;
1446            -hpmt | --hpmt)
1447                HPMT=true ;;
1448    
1449            -mpi | --mpi)
1450                MPI=true ;;
1451            -mpi=* | --mpi=*)
1452                MPIPATH=$ac_optarg
1453                MPI=true ;;
1454    
1455            -omp | --omp)
1456                OMP=true ;;
1457            -omp=* | --omp=*)
1458                OMPFLAG=$ac_optarg
1459                OMP=true ;;
1460    
1461          -ds | --ds)          -ds | --ds)
1462              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1463            
1464            -extra_flag | --extra_flag)
1465                ac_prev=FEXTRAFLAGS ;;
1466            -extra_flag=* | --extra_flag=*)
1467                FEXTRAFLAGS=$ac_optarg ;;
1468    
1469          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1470              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1471          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 712  for ac_option ; do Line 1476  for ac_option ; do
1476          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1477              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1478    
1479            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1480                IGNORE_TIME="-DIGNORE_TIME" ;;
1481    
1482            -es | --es | -embed-source | --embed-source)
1483                EMBED_SRC=t ;;
1484    
1485          -*)          -*)
1486              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1487              usage              usage
1488              ;;              ;;
1489            
1490          *)          *)
1491              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1492              usage              usage
1493              ;;              ;;
1494            
1495      esac      esac
1496        
1497  done  done
1498    
1499    printf "  getting local config information:  "
1500    if test -f $gm_local ; then
1501        echo "using $gm_local"
1502        . $gm_local
1503    else
1504        echo "none found"
1505    fi
1506    
1507  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1508      echo      echo
1509      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1510      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1511      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1512      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1513        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1514        echo "WARNING: ignore \"./.genmakerc\" and continue."
1515      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1516  fi  fi
1517    
1518    #  Find the MITgcm ${ROOTDIR}
1519  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1520      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1521        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1522          ROOTDIR=".."          ROOTDIR=".."
1523      else      else
1524          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1525              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1526                  ROOTDIR=$d                  ROOTDIR=$d
1527                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1528                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1529                  break                  break
1530              fi              fi
1531          done          done
# Line 763  if test ! -d ${ROOTDIR} ; then Line 1542  if test ! -d ${ROOTDIR} ; then
1542      exit 1      exit 1
1543  fi  fi
1544    
1545  echo "  getting OPTFILE information:  "  #  Find the MITgcm ${THISVER}
1546    version_file="${ROOTDIR}/doc/tag-index"
1547    if test -f $version_file ; then
1548        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1549    #-  remove ./BUILD_INFO.h file if older than version_file
1550        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1551            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1552            rm -f ./BUILD_INFO.h
1553        fi
1554    fi
1555    
1556    if test "x$MAKEFILE" = x ; then
1557        MAKEFILE="Makefile"
1558    fi
1559    
1560    echo "  getting OPTFILE information:"
1561  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1562      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1563          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1564          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1565          find_possible_configs          find_possible_optfile
1566      else      else
1567          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1568      fi      fi
# Line 779  if test "x$OPTFILE" != xNONE ; then Line 1573  if test "x$OPTFILE" != xNONE ; then
1573          . "$OPTFILE"          . "$OPTFILE"
1574          RETVAL=$?          RETVAL=$?
1575          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1576              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1577              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1578              exit 1              exit 1
1579          fi          fi
1580          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1581              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1582          fi          fi
1583      else      else
# Line 792  if test "x$OPTFILE" != xNONE ; then Line 1586  if test "x$OPTFILE" != xNONE ; then
1586      fi      fi
1587  fi  fi
1588    
1589  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1590  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1591      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
1592          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
# Line 806  if test "x${AD_OPTFILE}" != xNONE ; then Line 1600  if test "x${AD_OPTFILE}" != xNONE ; then
1600          . "$AD_OPTFILE"          . "$AD_OPTFILE"
1601          RETVAL=$?          RETVAL=$?
1602          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1603              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1604              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1605              exit 1              exit 1
1606          fi          fi
1607          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1608              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1609          fi          fi
1610      else      else
# Line 819  if test "x${AD_OPTFILE}" != xNONE ; then Line 1613  if test "x${AD_OPTFILE}" != xNONE ; then
1613      fi      fi
1614  fi  fi
1615    
1616  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #====================================================================
1617    #  Set default values if not set by the optfile
1618    #
1619    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1620  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1621    if test ! "x$BASH" = x ; then
1622        # add a trailing space so that it works within the Makefile syntax (see below)
1623        BASH="$BASH "
1624    fi
1625  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1626      cat <<EOF 1>&2      cat <<EOF 1>&2
1627    
# Line 831  Error: no Fortran compiler: please speci Line 1632  Error: no Fortran compiler: please speci
1632  EOF  EOF
1633      exit 1      exit 1
1634  fi  fi
1635    if test "x$GET_FC_VERSION" != x ; then
1636      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1637      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1638      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1639      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1640      if test -s genmake_fc_vers1 ; then
1641        cat genmake_fc_vers1 >> $LOGFILE
1642      else
1643        cat genmake_fc_vers2 >> $LOGFILE
1644      fi
1645      echo "<-- compiler version ----" >> $LOGFILE
1646      rm -f genmake_fc_vers1 genmake_fc_vers2
1647    fi
1648    
1649    if test "x$CC" = x ; then
1650        look_for_C_compilers
1651    fi
1652    
1653  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1654      LINK=$FC      LINK=$FC
1655  fi  fi
 if test "x$CPP" = x ; then  
     CPP="cpp"  
 fi  
1656  if test "x$MAKE" = x ; then  if test "x$MAKE" = x ; then
1657      MAKE="make"      MAKE="make"
1658  fi  fi
1659    if test "x$CPP" = x ; then
1660        CPP="cpp -traditional -P"
1661    fi
1662    #EH3 === UGLY ===
1663    #  The following is an ugly little hack to check for $CPP in /lib/ and
1664    #  it should eventually be replaced with a more general function that
1665    #  searches a combo of the user's path and a list of "usual suspects"
1666    #  to find the correct location for binaries such as $CPP.
1667    for i in " " "/lib/" ; do
1668        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1669    done
1670    #EH3 === UGLY ===
1671  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1672  RETVAL=$?  RETVAL=$?
1673  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 856  EOF Line 1684  EOF
1684  else  else
1685      rm -f test_cpp      rm -f test_cpp
1686  fi  fi
1687  if test "x$MAKEDEPEND" = x ; then  
1688      MAKEDEPEND=makedepend  look_for_makedepend
1689  fi  
1690    #  Check that soft-link command is set and usable
1691  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1692      LN="ln -s"      LN="ln -s"
1693  fi  fi
# Line 868  RETVAL=$? Line 1697  RETVAL=$?
1697  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1698      cat <<EOF 1>&2      cat <<EOF 1>&2
1699    
1700  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1701    command in the optfile.    command in the optfile.
1702    
1703  EOF  EOF
1704      exit 1      exit 1
1705  fi  fi
1706    test -L genmake_tlink > /dev/null 2>&1
1707    RETVAL=$?
1708    if test "x$RETVAL" = x0 ; then
1709        HAVE_TEST_L=t
1710    fi
1711  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1712    
1713    #  Check for broken *.F/*.f handling and fix if possible
1714    check_for_broken_Ff
1715    
1716    if test ! "x$MPI" = x ; then
1717          echo "  Turning on MPI cpp macros"
1718          DEFINES="$DEFINES -DALLOW_USE_MPI"
1719    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1720    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1721    fi
1722    if test ! "x$OMP" = x ; then
1723          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1724          FFLAGS="$FFLAGS $OMPFLAG"
1725          F90FLAGS="$F90FLAGS $OMPFLAG"
1726          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1727    fi
1728    
1729    if test ! "x$USE_R4" = x ; then
1730          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1731          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1732    fi
1733    
1734    if test ! "x$TS" = x ; then
1735          echo "  Turning on timing per timestep"
1736          if test ! "x$FOOLAD" = x ; then
1737                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1738          else
1739                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1740          fi
1741          PACKAGES="$PACKAGES showflops"
1742    fi
1743    if test ! "x$PAPIS" = x ; then
1744          echo "  Turning on PAPI flop summary per timestep"
1745          echo "  Please make sure PAPIINC, PAPILIB are defined"
1746          if test ! "x$FOOLAD" = x ; then
1747                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1748          else
1749                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1750          fi
1751          INCLUDES="$INCLUDES $PAPIINC"
1752          LIBS="$LIBS $PAPILIB"
1753          PACKAGES="$PACKAGES showflops"
1754    fi
1755    if test ! "x$PCLS" = x ; then
1756          echo "  Turning on PCL counter summary per timestep"
1757          echo "  Please make sure PCLINC, PCLLIB are defined"
1758          if test ! "x$FOOLAD" = x ; then
1759                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1760          else
1761                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1762          fi
1763          INCLUDES="$INCLUDES $PCLINC"
1764          LIBS="$LIBS $PCLLIB"
1765          PACKAGES="$PACKAGES showflops"
1766    fi
1767    if test ! "x$PAPI" = x ; then
1768          if test ! "x$PAPIS" = x ; then
1769              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1770              echo "  Sticking with PAPI flop summary per timestep!"
1771          else
1772              echo "  Turning on performance analysis with PAPI"
1773              echo "  Please make sure PAPIINC, PAPILIB are defined"
1774              DEFINES="$DEFINES -DUSE_PAPI"
1775              INCLUDES="$INCLUDES $PAPIINC"
1776              LIBS="$LIBS $PAPILIB"
1777          fi
1778    fi
1779    if test ! "x$PCL" = x ; then
1780          if test ! "x$PCLS" = x ; then
1781              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1782              echo "  Sticking with PCL flop summary per timestep!"
1783          else
1784              echo "  Turning on performance analysis with PCL"
1785              echo "  Please make sure PCLINC, PCLLIB are defined"
1786              DEFINES="$DEFINES -DUSE_PCL"
1787              INCLUDES="$INCLUDES $PCLINC"
1788              LIBS="$LIBS $PCLLIB"
1789          fi
1790    fi
1791    if test ! "x$HPMT" = x ; then
1792          if test ! "x$PAPI" = x ; then
1793              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1794              echo "  Sticking with PAPI!"
1795          else
1796            if test ! "x$PCL" = x ; then
1797              echo "  PCL and the HPM Toolkit cannot co-exist!"
1798              echo "  Sticking with PCL!"
1799            else
1800              echo "  Turning on performance analysis with the HPM Toolkit"
1801              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1802              DEFINES="$DEFINES -DUSE_LIBHPM"
1803              INCLUDES="$INCLUDES $HPMTINC"
1804              LIBS="$LIBS $HPMTLIB"
1805            fi
1806          fi
1807    fi
1808    if test ! "x$GSL" = x ; then
1809          echo "  Turning on use of GSL to control floating point calculations"
1810          echo "  Please make sure GSLINC, GSLLIB are defined"
1811          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1812          INCLUDES="$INCLUDES $GSLINC"
1813          LIBS="$LIBS $GSLLIB"
1814    fi
1815    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1816    if test ! "x$USE_EXTENDED_SRC" = x ; then
1817          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1818          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1819    fi
1820    
1821  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1822  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1823  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1824        program hello        program hello
1825        call system('echo hi')        call system('echo hi')
1826        end        end
1827  EOF  EOF
1828  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1829  RETVAL=$?  RETVAL=$?
1830  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1831      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 896  else Line 1837  else
1837  fi  fi
1838  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1839    
1840  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1841  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1842        program hello        program hello
1843        CHARACTER(128) string        CHARACTER*(128) string
1844        string = ' '        string = ' '
1845        call fdate( string )        call fdate( string )
1846        print *, string        print *, string
1847        end        end
1848  EOF  EOF
1849  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1850  RETVAL=$?  RETVAL=$?
1851  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1852      HAVE_FDATE=t      HAVE_FDATE=t
# Line 917  else Line 1858  else
1858  fi  fi
1859  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1860    
1861  echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1862    cat > genmake_tcomp.$FS <<EOF
1863          program hello
1864          REAL*4 ACTUAL, TARRAY(2)
1865          EXTERNAL ETIME
1866          REAL*4 ETIME
1867          actual = etime( tarray )
1868          print *, tarray
1869          end
1870    EOF
1871    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1872    RETVAL=$?
1873    if test "x$RETVAL" = x0 ; then
1874        HAVE_ETIME=t
1875        DEFINES="$DEFINES -DHAVE_ETIME"
1876        echo "yes"
1877    else
1878        HAVE_ETIME=
1879        echo "no"
1880    fi
1881    rm -f genmake_tcomp*
1882    
1883    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1884  check_HAVE_CLOC  check_HAVE_CLOC
1885  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1886        DEFINES="$DEFINES -DHAVE_CLOC"
1887        echo "yes"
1888    else
1889        echo "no"
1890        if test "x$EMBED_SRC" = xt ; then
1891            echo "    WARNING: you requested file embedding but it has"
1892            echo "      been disabled since C code cannot be called"
1893            EMBED_SRC=
1894        fi
1895    fi
1896    rm -f genmake_t*
1897    
1898    printf "  Can we unlimit the stack size using $FC...  "
1899    check_HAVE_SETRLSTK
1900    if test "x$HAVE_SETRLSTK" = xt ; then
1901        DEFINES="$DEFINES -DHAVE_SETRLSTK"
1902        echo "yes"
1903    else
1904        echo "no"
1905    fi
1906    rm -f genmake_t*
1907    
1908    printf "  Can we register a signal handler using $FC...  "
1909    check_HAVE_SIGREG
1910    if test "x$HAVE_SIGREG" = xt ; then
1911        DEFINES="$DEFINES -DHAVE_SIGREG"
1912        echo "yes"
1913    else
1914        echo "no"
1915    fi
1916    rm -f genmake_t*
1917    
1918    printf "  Can we use stat() through C calls...  "
1919    check_HAVE_STAT
1920    if test "x$HAVE_STAT" != x ; then
1921        DEFINES="$DEFINES -DHAVE_STAT"
1922      echo "yes"      echo "yes"
1923  else  else
1924      echo "no"      echo "no"
1925  fi  fi
1926  rm -f genmake_t*  rm -f genmake_t*
1927    
1928  echo -n "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
1929  check_netcdf_libs  check_netcdf_libs
1930  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
1931        DEFINES="$DEFINES -DHAVE_NETCDF"
1932      echo "yes"      echo "yes"
1933  else  else
1934      echo "no"      echo "no"
1935  fi  fi
1936    
1937    printf "  Can we create LAPACK-enabled binaries...  "
1938    check_lapack_libs
1939    if test "x$HAVE_LAPACK" != x ; then
1940        DEFINES="$DEFINES -DHAVE_LAPACK"
1941        echo "yes"
1942    else
1943        echo "no"
1944    fi
1945    
1946    printf "  Can we call FLUSH intrinsic subroutine...  "
1947    check_HAVE_FLUSH
1948    if test "x$HAVE_FLUSH" = xt ; then
1949        DEFINES="$DEFINES -DHAVE_FLUSH"
1950        echo "yes"
1951    else
1952        echo "no"
1953    fi
1954    
1955    DEFINES="$DEFINES $IGNORE_TIME"
1956    if test "x$EMBED_SRC" = xt ; then
1957        build_embed_encode
1958    fi
1959    if test "x$EMBED_SRC" = xt ; then
1960        ENABLE="$ENABLE embed_files"
1961    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
1962    fi
1963    
1964  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1965  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1966  for d in $MODS ; do  for d in $MODS ; do
1967      if test ! -d $d ; then      if test ! -d $d ; then
1968          echo          echo
1969          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1970          exit 1          exit 1
1971      else      else
1972          echo -n " $d"          printf "$d "
1973          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1974          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1975      fi      fi
1976  done  done
1977  echo  echo
1978    
1979  if test "x$MAKEFILE" = x ; then  #if test "x${PLATFORM}" = x ; then
1980      MAKEFILE="Makefile"  #    PLATFORM=$p_PLATFORM
1981  fi  #fi
 if test "x${PLATFORM}" = x ; then  
     PLATFORM=$p_PLATFORM  
 fi  
1982    
1983  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1984      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1985        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1986          EXEDIR=../exe          EXEDIR=../exe
1987      else      else
1988          EXEDIR=.          EXEDIR=.
# Line 973  if test "x${TOOLSDIR}" = x ; then Line 1997  if test "x${TOOLSDIR}" = x ; then
1997      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1998  fi  fi
1999  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
2000      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
2001      exit 1      exit 1
2002  fi  fi
2003  if test "x$S64" = x ; then  if test "x$S64" = x ; then
2004      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
2005        RETVAL=$?
2006        if test "x${RETVAL}" = x0 ; then
2007            S64='$(TOOLSDIR)/set64bitConst.sh'
2008        else
2009            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
2010            RETVAL=$?
2011            if test "x${RETVAL}" = x0 ; then
2012                S64='$(TOOLSDIR)/set64bitConst.csh'
2013            else
2014                cat <<EOF
2015    
2016    ERROR: neither of the two default scripts:
2017    
2018        ${TOOLSDIR}/set64bitConst.sh
2019        ${TOOLSDIR}/set64bitConst.csh
2020    
2021      are working so please check paths or specify (with \$S64) a
2022      working version of this script.
2023    
2024    EOF
2025                exit 1
2026            fi
2027        fi
2028  fi  fi
2029  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
2030    
2031  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2032    
2033    #  Set Standard Code Directories:
2034    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2035        STANDARDDIRS="eesupp model"
2036    fi
2037    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2038    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2039    ckM=$?
2040    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2041    ckE=$?
2042    if test $ckM = 0 -a $ckE = 1 ; then
2043        STANDARDDIRS="$STANDARDDIRS eesupp"
2044    fi
2045    
2046  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2047  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2048  #  they appear as regular source code  #  they appear as regular source code
2049  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2050      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2051      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2052        ) > make_eesupp.errors 2>&1
2053      RETVAL=$?      RETVAL=$?
2054      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2055          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 999  if test -r $ROOTDIR"/eesupp/src/Makefile Line 2060  if test -r $ROOTDIR"/eesupp/src/Makefile
2060      fi      fi
2061  fi  fi
2062    
2063  #same for exch2  #same for pkg/exch2 and pkg/regrid
2064  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
2065      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2066      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
2067      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2068      if test "x${RETVAL}" = x0 ; then          ) > make_${pdir}.errors 2>&1
2069          rm -f make_exch2.errors          RETVAL=$?
2070      else          if test "x${RETVAL}" = x0 ; then
2071          echo "Error: problem encountered while building source files in exch2:"              rm -f make_${pdir}.errors
2072          cat make_exch2.errors 1>&2          else
2073          exit 1              echo "Error: problem encountered while building source files in pkg/${pdir}:"
2074                cat make_${pdir}.errors 1>&2
2075                exit 1
2076            fi
2077      fi      fi
2078  fi  done
2079    
2080  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2081  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2082      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2083      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2084          PDEPEND=$tmp  fi
2085      else  if  test "x${PKG_DEPEND}" = x ; then
2086          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2087          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2088  else  else
2089      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2090          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2091          exit 1          exit 1
2092      fi      fi
2093        echo "  getting package dependency info from  $PKG_DEPEND"
2094    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2095        get_pdepend_list $PKG_DEPEND
2096  fi  fi
2097  echo "  getting package dependency info from  $PDEPEND"  
2098  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2099  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2100  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2101      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2102      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2103  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2104  if test ! "x${RETVAL}" = x0 ; then  fi
2105      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2106      exit 1          echo "Warning:  No package groups information was specified."
2107            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2108    else
2109        if test ! -r ${PKG_GROUPS} ; then
2110            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2111            exit 1
2112        fi
2113        echo "  getting package groups info from      $PKG_GROUPS"
2114  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
2115    
2116  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2117  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2118  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2119  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2120      for i in "." $MODS ; do      for i in "." $MODS ; do
2121          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2122                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2123                  break                  break
2124          fi          fi
2125      done      done
2126  fi  fi
2127  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2128      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2129  fi      if test "x${PKG_GROUPS}" = x ; then
2130  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2131      echo "    default packages file disabled"          exit 1
2132        fi
2133  else  else
2134      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2135          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2136            exit 1
2137      else      else
2138          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2139          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2140          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2141          RETVAL=$?          RETVAL=$?
2142          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2143              echo -n "Error: can't parse default package list "              printf "Error: can't parse package list "
2144              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2145              exit 1              exit 1
2146          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         expand_pkg_groups  
         echo "    after group expansion packages are:  $PACKAGES"  
2147      fi      fi
2148  fi  fi
2149    for i in $pkg_list ; do
2150        PACKAGES="$PACKAGES $i"
2151    done
2152    echo     "    before group expansion packages are:$PACKAGES"
2153    if test "x${PKG_GROUPS}" != x ; then
2154        RET=1
2155        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2156        echo "    after group expansion packages are: $PACKAGES"
2157    fi
2158    
2159  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2160    echo "" > ./.tmp_pack
2161    for i in $PACKAGES ; do
2162        echo $i >> ./.tmp_pack
2163    done
2164    for i in `grep  "-" ./.tmp_pack` ; do
2165        j=`echo $i | sed 's/[-]//'`
2166        DISABLE="$DISABLE $j"
2167    done
2168  pack=  pack=
2169  for p in $PACKAGES ; do  for p in $PACKAGES ; do
2170      addit="t"      addit="t"
# Line 1098  PACKAGES="$pack" Line 2181  PACKAGES="$pack"
2181  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2182  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
2183  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2184    # Test if each explicitly referenced package exists
2185  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2186      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
2187          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""      if test ! -d "$ROOTDIR/pkg/$j" ; then
2188            echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2189          exit 1          exit 1
2190      fi      fi
2191      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2192  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
2193  PACKAGES=  PACKAGES=
2194  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
2195      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2196  done  done
2197  echo "    packages are:  $PACKAGES"  rm -f ./.tmp_pack
2198    echo "    packages are: $PACKAGES"
2199    
2200    #  Check for package MNC: if NetCDF is available, then build the MNC
2201    #  template files ; otherwise, delete mnc from the list of packages.
2202    echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2203    mnc_in=$?
2204    if test "x$HAVE_NETCDF" != xt ; then
2205        if test "x$mnc_in" = x0 ; then
2206            cat <<EOF
2207    *********************************************************************
2208    WARNING: the "mnc" package was enabled but tests failed to compile
2209      NetCDF applications.  Please check that:
2210    
2211      1) NetCDF is correctly installed for this compiler and
2212      2) the LIBS variable (within the "optfile") specifies the correct
2213           NetCDF library to link against.
2214    
2215      Due to this failure, the "mnc" package is now DISABLED.
2216    *********************************************************************
2217    EOF
2218            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2219            DISABLE="$DISABLE mnc"
2220        else
2221        #  this prevent to add mnc (due to pdepend rules) if not available
2222            DISABLE="$DISABLE mnc"
2223        fi
2224    else
2225        # we have NetCDF, we try to build MNC template files
2226        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2227        RETVAL=$?
2228        if test "x${RETVAL}" = x0 ; then
2229            rm -f make_mnc.errors
2230        else
2231            echo "Error: problem encountered while building source files in pkg/mnc:"
2232            cat make_mnc.errors 1>&2
2233            if test "x$mnc_in" = x0 ; then
2234                exit 1
2235            else
2236                DISABLE="$DISABLE mnc"
2237            fi
2238        fi
2239    fi
2240    
2241    #  Check for package PROFILES: if NetCDF is not available,
2242    #  then delete profiles from the list of available packages.
2243    if test "x$HAVE_NETCDF" != xt ; then
2244        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2245        RETVAL=$?
2246        if test "x$RETVAL" = x0 ; then
2247            cat <<EOF
2248    *********************************************************************
2249    WARNING: the "profiles" package was enabled but tests failed to
2250      compile NetCDF applications.  Please check that:
2251    
2252      1) NetCDF is correctly installed for this compiler and
2253      2) the LIBS variable (within the "optfile") specifies the correct
2254           NetCDF library to link against.
2255    
2256      Due to this failure, the "profiles" package is now DISABLED.
2257    *********************************************************************
2258    EOF
2259            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2260            DISABLE="$DISABLE profiles"
2261        else
2262        #  this prevent to add profiles (due to pdepend rules) if not available
2263            DISABLE="$DISABLE profiles"
2264        fi
2265    fi
2266    
2267    #  Check for package RADTRANS: if LAPACK is not available,
2268    #  then issue a warning that the direct radtrans solver is not available.
2269    if test "x$HAVE_LAPACK" != xt ; then
2270        echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1
2271        RETVAL=$?
2272        if test "x$RETVAL" = x0 ; then
2273            cat <<EOF
2274    *********************************************************************
2275    WARNING: the "radtrans" package was enabled but tests failed to
2276      compile LAPACK applications.  This means that the direct radtrans
2277      solver is not available and compilation will fail if it is enabled.
2278      If you want to use the direct solver, please check that:
2279    
2280      1) LAPACK is correctly installed for this compiler and
2281      2) the LIBS variable (within the "optfile") specifies the correct
2282         LAPACK library to link against.
2283    *********************************************************************
2284    EOF
2285        fi
2286    fi
2287    
2288  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2289  ck=    echo "  applying package dependency rules"
2290  while test "x$ck" != xtt ; do    ck=
2291      while test "x$ck" != xtt ; do
2292      i=0      i=0
2293      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2294      rtot=$nname      rtot=$nname
2295      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2296    
2297          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2298          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1131  while test "x$ck" != xtt ; do Line 2304  while test "x$ck" != xtt ; do
2304                  pin="t"                  pin="t"
2305              fi              fi
2306          done          done
2307            #  or in the current $STANDARDDIRS list?
2308            for p in $STANDARDDIRS ; do
2309                if test "x$p" = "x$pname" ; then pin="t" ; fi
2310            done
2311    
2312          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2313          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 1153  while test "x$ck" != xtt ; do Line 2330  while test "x$ck" != xtt ; do
2330    
2331          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2332          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2333                #echo "   " $pname ": need to add :" $dname
2334              in_dis="f"              in_dis="f"
2335              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2336                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1173  while test "x$ck" != xtt ; do Line 2351  while test "x$ck" != xtt ; do
2351          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2352          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2353              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2354              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2355              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2356              exit 1              exit 1
2357          fi          fi
2358          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2359            #i=$(( $i + 1 ))
2360      done      done
2361      ck=$ck"t"      ck=$ck"t"
2362  done    done
2363  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2364    fi
2365  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2366      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2367      if test -d $adr ; then      if test -d $adr ; then
# Line 1196  for i in $PACKAGES ; do Line 2376  for i in $PACKAGES ; do
2376      fi      fi
2377  done  done
2378    
 #  Build MNC templates and check for ability to build and use NetCDF  
 echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  
 RETVAL=$?  
 if test "x$RETVAL" = x0 ; then  
     ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         rm -f make_mnc.errors  
     else  
         echo "Error: problem encountered while building source files in pkg/mnc:"  
         cat make_mnc.errors 1>&2  
         exit 1  
     fi  
     if test -a "x$HAVE_NETCDF" != xt ; then  
         cat <<EOF  
   
 WARNING: the "mnc" package has been enabled but tests failed to  
   compile and/or execute NetCDF applications.  Please check that:  
   
   1) NetCDF is installed for your compiler and  
   2) the LIBS variable (within the 'optfile") specifies the correct  
        NetCDF library to link against.  
     
 EOF  
     fi  
 fi  
   
2379  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2380  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2381  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2382  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2383  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2384  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2385  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 1242  for n in $names ; do Line 2395  for n in $names ; do
2395              fi              fi
2396          done          done
2397          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2398              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2399              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2400          fi          fi
2401      fi      fi
2402  done  done
2403  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2404  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2405      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2406      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2407  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2408    
2409  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2410      case $i in      case $i in
2411          aim_v23)          aim_v23)
2412              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2413              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
2414              ;;              ;;
2415      esac      esac
# Line 1264  for i in $PACKAGES ; do Line 2417  for i in $PACKAGES ; do
2417    
2418  done  done
2419    
2420  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2421  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2422  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2423      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2424          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 1301  for i in $spaths ; do Line 2451  for i in $spaths ; do
2451      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2452          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2453          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2454          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2455          for n in $names ; do          for n in $names ; do
2456              test_for_package_in_cpp_options $CPP_OPTIONS $n              test_for_package_in_cpp_options $CPP_OPTIONS $n
2457          done          done
2458      fi      fi
2459      try="$i/CPP_EEOPTIONS.h"      try="$i/CPP_EEOPTIONS.h"
2460      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2461          echo "    found CPP_EEOPTIONS=\"$try\""          echo "    found CPP_EEOPTIONS=\"$try\""
2462          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2463  #**** not yet enabled ****  #**** not yet enabled ****
2464  #        test_for_mpi_in_cpp_eeoptions $try  #        test_for_mpi_in_cpp_eeoptions $try
2465  #**** not yet enabled ****  #**** not yet enabled ****
# Line 1323  fi Line 2473  fi
2473    
2474  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2475  #  compiler.  #  compiler.
2476  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2477      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2478  fi  fi
2479  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2480    touch adSrcFiles.tmp
2481  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2482      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2483      for j in $list_files ; do      for j in $list_files ; do
2484          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2485      done      done
2486  done  done
2487    if test ! "x"$FS = "x.f" ; then
2488        cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2489        mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2490    fi
2491    
2492  echo  echo
2493  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2494  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2495  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2496      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2497          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2498      fi      fi
2499  done  done
2500    
2501    if test ! "x$DIVA" = x ; then
2502        echo "  Creating the pseudo-MPI include directory"
2503        INCLUDES="-I./mpi_headers $INCLUDES"
2504        rm -rf ./mpi_headers
2505        mkdir -p ./mpi_headers
2506    
2507        if test "x$MPIINCLUDEDIR" = x ; then
2508            if test "x$MPIHOME" = x ; then
2509                MPIHOME='/usr'
2510            fi
2511            MPIINCLUDEDIR='$MPIHOME/include'
2512        fi
2513    
2514        if test -r $MPIINCLUDEDIR/mpif.h ; then
2515            for i in $MPI_HEADER_FILES; do
2516                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2517            done
2518    
2519            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2520        else
2521            echo " We cannot create a copy of mpif.h!"
2522    #       exit -1
2523        fi
2524    fi
2525    
2526  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2527  rm -rf .links.tmp  rm -rf .links.tmp
2528  mkdir .links.tmp  mkdir .links.tmp
2529    touch .links.tmp/foo
2530    if test ! -r ".links.tmp/foo" ; then
2531        echo
2532        echo "ERROR : something is wrong with your directory permissions or"
2533        echo "   your user file-creation mask (\"umask\") since creating a"
2534        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2535        echo "   not working.  Please try setting your umask to something"
2536        echo "   sane such as:"
2537        echo
2538        echo "      umask 0002"
2539        echo
2540        echo "   and please verify that you have the proper permissions for"
2541        echo "   creating sub-directories and then reading files created"
2542        echo "   within them."
2543        echo
2544        exit 1
2545    fi
2546    rm -f .links.tmp/foo
2547    
2548    if test "x$OPENAD" != x ; then
2549        OAD_DONT_COMPILE="/dev/null"
2550        OAD_DONT_TRANSFORM="/dev/null"
2551        OAD_KEEP_ORIGINAL="/dev/null"
2552        OAD_CB2M_FILES="/dev/null"
2553        OADTOOLS="$TOOLSDIR/OAD_support"
2554        test -f "oadtempflile"  &&  \rm -f "oadtempflile"
2555    cat >> "oadtempflile" <<EOF
2556    $OADTOOLS
2557    EOF
2558        echo "  looking for dontCompile file:  "
2559        for i in "." $MODS ; do
2560            if test -r $i"/dontCompile" ; then
2561                OAD_DONT_COMPILE=$i"/dontCompile"
2562                echo "     found $OAD_DONT_COMPILE"
2563                break
2564            fi
2565        done
2566        echo "  looking for dontTransform file:  "
2567        for i in "." $MODS ; do
2568            if test -r $i"/dontTransform" ; then
2569                OAD_DONT_TRANSFORM=$i"/dontTransform"
2570                echo "     found $OAD_DONT_TRANSFORM"
2571                break
2572            fi
2573        done
2574        echo "  looking for keepOriginal file:  "
2575        for i in "." $MODS ; do
2576            if test -r $i"/keepOriginal" ; then
2577                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2578                echo "     found $OAD_KEEP_ORIGINAL"
2579                break
2580            fi
2581        done
2582        echo "  looking for cb2mFiles:  "
2583        for i in "." $MODS ; do
2584            if test -r $i"/cb2mFiles" ; then
2585                OAD_CB2M_FILES=$i"/cb2mFiles"
2586                echo "     found $OAD_CB2M_FILES"
2587                break
2588            fi
2589        done
2590        echo "   OpenAD exceptions:  "
2591    fi
2592    
2593  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2594  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2595  echo -n 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2596  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2597  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2598  echo -n 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2599  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2600    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2601  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2602  for d in $alldirs ; do  for d in $alldirs ; do
2603      deplist=      deplist=
2604      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2605      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2606        if test "x$OPENAD" != x ; then
2607            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2608        fi
2609      for sf in $sfiles ; do      for sf in $sfiles ; do
2610          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2611              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2612                  case $d/$sf in                  ignore_f=f
2613                    ./$PACKAGES_DOT_H)                  case $d/$sf in
2614                      ./$PACKAGES_DOT_H)
2615                            ignore_f=t
2616                            ;;
2617                      ./AD_CONFIG.h)
2618                            ignore_f=t
2619                          ;;                          ;;
2620                    ./AD_CONFIG.h)                    ./FC_NAMEMANGLE.h)
2621                            ignore_f=t
2622                          ;;                          ;;
2623                    ./FC_NAMEMANGLE.h)                    ./BUILD_INFO.h)
2624                            ignore_f=t
2625                          ;;                          ;;
2626                    *)                    ./EMBEDDED_FILES.h)
2627                          touch .links.tmp/$sf                          ignore_f=t
                         deplist="$deplist $sf"  
2628                          ;;                          ;;
2629                  esac                    *)
2630                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                          #  For the local directory *ONLY*,
2631                  case $extn in                          #  ignore all soft-links
2632                      F)                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2633                          echo    " \\"  >> srclist.inc                              ignore_f=t
2634                          echo -n " $sf" >> srclist.inc                          else
2635                                touch .links.tmp/$sf
2636                                deplist="$deplist $sf"
2637                            fi
2638                            ;;
2639                    esac
2640                    if test "x$ignore_f" = xf ; then
2641                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2642                        case $extn in
2643                          F)
2644                            echo    " \\"  >> F77srclist.tmp
2645                            printf " $sf" >> F77srclist.tmp
2646                            if test "x$OPENAD" != x ; then
2647                                basename=${sf%%.F}
2648                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2649                                if test -z "$isAD" ; then
2650                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2651                                    if test -z "$toBeIgnored" ; then
2652                                        echo    " \\"  >> nonADF77srclist.tmp
2653                                        printf " $sf" >> nonADF77srclist.tmp
2654                                    else
2655                                        echo "    not to be compiled   :  $sf"
2656                                    fi
2657                                else # file is initially listed as an AD file we want to exclude it
2658                                     # or we want to retain the untransformed version
2659                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2660                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2661                                    if test -n "$notToBeTransformed"; then
2662                                        echo "    not to be transformed:  $sf"
2663                                    fi
2664                                    if test -n "$untransformedVersionToBeKept" ; then
2665                                        echo "    original to be kept  :  $sf"
2666                                    fi
2667                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2668                                        echo    " \\"  >> nonADF77srclist.tmp
2669                                        printf " $sf" >> nonADF77srclist.tmp
2670                                    fi
2671                                fi
2672                            fi
2673                          ;;                          ;;
2674                      F90)                      F90)
2675                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2676                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2677                          ;;                          ;;
2678                      c)                      c)
2679                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2680                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2681                          ;;                          ;;
2682                      h)                      h)
2683                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2684                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2685                          ;;                          ;;
2686                      flow)                      flow)
2687                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.tmp
2688                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.tmp
2689                          ;;                          ;;
2690                  esac                     esac
2691                    fi
2692              fi              fi
2693          fi          fi
2694      done      done
2695      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2696          if test "$d" != "." ; then
2697          echo "" >> srclinks.tmp          echo "" >> srclinks.tmp
2698          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2699          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2700          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2701    # This may happen when make thinks that a header file has to be "remade"
2702    # because a module it depends on has changed.  In this case we do nothing.
2703            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2704          fi
2705      fi      fi
2706  done  done
2707  rm -rf .links.tmp  rm -rf .links.tmp
2708  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2709  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2710  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2711  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2712  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2713    echo "" >> ad_flow_files.tmp
2714    
2715    CMDLINE=$0
2716    for xx in "$@" ; do nw=`echo $xx | wc -w`
2717        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2718                            else CMDLINE="$CMDLINE '$xx'" ; fi
2719    done
2720    
2721  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2722      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2723  fi  fi
2724  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2725  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 1425  echo "#    $MACHINE" >> $MAKEFILE Line 2727  echo "#    $MACHINE" >> $MAKEFILE
2727  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2728  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2729  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2730  echo "#    $0 $@" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2731  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2732  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2733    
2734  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2735  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
# Line 1436  EXE_SVD=$EXECUTABLE"_svd" Line 2738  EXE_SVD=$EXECUTABLE"_svd"
2738  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2739  #  #
2740  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2741  #  #
2742  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2743  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2744  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 1447  cat >>$MAKEFILE <<EOF Line 2749  cat >>$MAKEFILE <<EOF
2749  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2750  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2751  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2752  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2753  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2754  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 1456  cat >>$MAKEFILE <<EOF Line 2756  cat >>$MAKEFILE <<EOF
2756  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2757    
2758  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2759  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2760  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2761  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2762  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2763  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2764  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2765    OADTOOLS    = ${OADTOOLS}
2766    
2767  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2768  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 1473  ENABLED_PACKAGES = ${ENABLED_PACKAGES} Line 2774  ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2774  DISABLED_PACKAGES = ${DISABLED_PACKAGES}  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2775    
2776  # These files are created by Makefile  # These files are created by Makefile
2777  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2778  EOF  EOF
2779    
2780  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2781        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2782    else
2783        echo "EMBEDDED_FILES = " >>$MAKEFILE
2784    fi
2785    
2786    # extract default cpp search path so we can pass it to makedepend
2787    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2788    
2789  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2790  # Unix ln (link)  # Unix ln (link)
2791  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2792  # Dependency generator  # Dependency generator
2793  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2794  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 1492  KPP = ${KPP} Line 2797  KPP = ${KPP}
2797  FC = ${FC}  FC = ${FC}
2798  # Fortran compiler  # Fortran compiler
2799  F90C = ${F90C}  F90C = ${F90C}
2800    # C compiler
2801    CC = ${CC}
2802  # Link editor  # Link editor
2803  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2804    
2805  # Defines for CPP  # Defines for CPP
2806  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2807  # Includes for CPP  # Includes for CPP
2808  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2809    # default CPP includes for makedepend
2810    CPPINCLUDES = ${CPPINCLUDES}
2811  # Flags for KPP  # Flags for KPP
2812  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2813  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2814  # Optim./debug for FC  # Optim./debug for FC
2815  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2816  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2817  # Optim./debug for FC  # Optim./debug for FC
2818  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2819  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2820    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2821  # Flags for CC  # Flags for CC
2822  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2823  # Files that should not be optimized  # Files that should not be optimized
2824  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2825  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2826  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2827  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2828  # Name of the Mekfile  # Name of the makefile
2829  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2830    # Name of the make program
2831    MAKE = ${MAKE}
2832    
2833  EOF  EOF
2834    
2835  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2836  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2837  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2838  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2839  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2840  echo               >> $MAKEFILE  cat ad_flow_files.tmp   >> $MAKEFILE
2841  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  
2842  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
 echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2843    
2844  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  echo >> $MAKEFILE
2845  rm -f ad_flow_files.inc  
2846    # add definitions for preprocessed sources
2847    # and note that not all systems allow case sensitive extensions
2848    # hence the $FS and $FS90 here.
2849    # for fixed format f90 files we use ff90 or FF90 resp
2850    # but these are not expected to be the original source files
2851    
2852    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2853    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2854    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2855    echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2856    echo >> $MAKEFILE
2857    echo '.SUFFIXES:' >> $MAKEFILE
2858    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2859    
2860  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2861    
2862  .SUFFIXES:  all: fwd_exe_target
2863  .SUFFIXES: .o .f .p .F .c .F90 .f90  fwd_exe_target:
2864            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2865            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2866            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2867            @-rm -f ad_config.template
2868            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2869    
2870  all: \$(EXECUTABLE)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
 \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  
2871          @echo Creating \$@ ...          @echo Creating \$@ ...
2872          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2873    
2874  depend:  depend:
2875          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2876          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2877          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2878            -rm -f makedepend.out
2879    
2880    lib: libmitgcmuv.a
2881    
2882    libmitgcmuv.a: \$(OBJFILES)
2883            ar rcv libmitgcmuv.a \$(OBJFILES)
2884            ar d   libmitgcmuv.a main.o
2885    
2886    obj: \$(OBJFILES)
2887    
2888  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2889    
2890  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2891    
2892  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2893          @printf 'running ... '          @printf 'running ... '
2894          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2895    
2896    # remove most of the files that "make" generates
2897  clean:  clean:
2898          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2899            -rm -rf *.o
2900            -rm -rf *.$FS *.flowdir
2901            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2902    
2903    # remove most of the files that "make" and "make depend" generate
2904  Clean:  Clean:
2905          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2906          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2907          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2908          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2909            -rm -f genmake_warnings genmake_errors make.log
2910    
2911    # remove also the executable, files that "genmake2" generates (except Makefile)
2912    #         and output from a run (plus log files from testreport)
2913  CLEAN:  CLEAN:
2914          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2915            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2916            -rm -f $LOGFILE genmake_state genmake_*optfile
2917            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2918          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2919          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2920          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2921          -rm -f \$(EXECUTABLE) output.txt          -rm -f *.txt STD* *diagnostics.log datetime
2922            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2923            -rm -rf mnc_test_*
2924    
 #eh3 Makefile: makefile  
2925  makefile:  makefile:
2926          $THIS_SCRIPT $@          $THIS_SCRIPT $G2ARGS
2927  cleanlinks:  cleanlinks:
2928          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2929    
2930  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2931  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2932          @echo Creating \$@ ...          @echo Creating \$@ ...
2933          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2934  AD_CONFIG.h:  AD_CONFIG.h:
2935          @echo Creating \$@ ...          @echo Creating \$@ ...
2936          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
2937  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
2938          @echo Creating \$@ ...          @echo Creating \$@ ...
2939          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
2940    
2941  # The normal chain of rules is (  .F - .f - .o  )  BUILD_INFO.h:
2942  .F.f:          @echo Creating \$@ ...
2943          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@  EOF
2944  .f.o:  
2945    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2946    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2947    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2948    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2949    
2950    if test "x$EMBED_SRC" = xt ; then
2951        cat >>$MAKEFILE <<EOF
2952    
2953    decode_files.o : EMBEDDED_FILES.h
2954    
2955    ##  \$(F77_PP_SRC_FILES)
2956    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2957            @echo Creating \$@ ...
2958            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2959            -rm -f all_fF.tar.gz
2960            -gzip all_fF.tar
2961    
2962    EMBEDDED_FILES.h : all_fF.tar.gz
2963            @echo Creating \$@ ...
2964            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2965    
2966    EOF
2967    fi
2968    
2969    cat >>$MAKEFILE <<EOF
2970    
2971    # The normal chain of rules is (  .F - .$FS - .o  )
2972    
2973    ## This nullifies any default implicit rules concerning these two file types:
2974    ## %.o : %.F
2975    
2976    # C preprocessing and replacing the _d in constants:
2977    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
2978    
2979    .F.$FS:
2980            \$(CPPCMD)  > \$@
2981    .$FS.o:
2982          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2983  .F90.f90:  .F.o:
2984          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2985  .f90.o:  .F90.$FS90:
2986            \$(CPPCMD)  > \$@
2987    .FF90.f$FS90:
2988            \$(CPPCMD)  > \$@
2989    .$FS90.o:
2990          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2991    .f$FS90.o:
2992            cp \$< \$(basename  \$<).f90
2993            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2994  .c.o:  .c.o:
2995          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2996    .flow.flowdir:
2997            \$(CPPCMD) > \$@
2998    
2999  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3000  .F.p:  .F.p:
3001          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3002  .p.f:  .p.$FS:
3003          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3004    
3005    EOF
3006    
3007  #=========================================  #=========================================
3008  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
3009    #===  for TAMC/TAF  ======================
3010    
3011    if test "x$OPENAD" = x ; then
3012    
3013    cat >>$MAKEFILE <<EOF
3014    
3015  TAMC           = ${TAMC}  TAMC           = ${TAMC}
3016  TAF            = ${TAF}  TAF            = ${TAF}
# Line 1620  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 3025  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
3025  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
3026  for i in $ad_vars ; do  for i in $ad_vars ; do
3027      name=$i      name=$i
3028      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
3029      eval $t1      eval $t1
3030      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
3031      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
3032  done  done
3033    
3034  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
3035  echo >> $MAKEFILE  echo >> $MAKEFILE
3036  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
3037  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
3038  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3039      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
3040      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
3041  done  done
3042  echo >> $MAKEFILE  echo >> $MAKEFILE
3043  rm -f ad_files  rm -f adSrcFiles.tmp
3044    
3045  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3046    
3047  # ... AD ...  # ... AD ...
3048  adall: ad_taf  adall: ad_exe_target
3049  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
3050  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
3051    
3052    ad_exe_target:
3053            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3054            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3055            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3056            @-rm -f ad_config.template
3057            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3058    
3059  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3060          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3061          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3062          -rm -f ad_config.template          @-rm -f ad_config.template
3063          @make \$(F77FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3064          @make \$(AD_FLOW_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3065          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3066    
3067  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
3068          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3069          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
3070            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3071    
3072  adtafonly:  adtafonly:
3073          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3074          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
3075            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3076    
3077    \$(EXE_AD): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ad_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3078            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
3079    
3080    ad_tamc_output.$FS: ad_input_code.$FS
3081            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3082            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3083    
3084  ad_taf: ad_taf_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
3085          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3086    
3087  ad_tamc_output.f: ad_input_code.f  adonlyfwd:
3088          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
         cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f  
3089    
3090  ad_tamc: ad_tamc_output.o \$(OBJFILES)  adtrick:
3091          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3092    
3093    adobj: ad_taf_output.o \$(OBJFILES)
3094    
3095  # ... FTL ...  # ... FTL ...
3096  ftlall: ftl_taf  ftlall: ftl_exe_target
3097  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
3098  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
3099    
3100  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_exe_target:
3101          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3102          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3103          -rm -f ftl_config.template          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3104          @make \$(F77FILES)          @-rm -f ad_config.template
3105          @make \$(AD_FLOW_FILES)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
         cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f  
   
 ftl_taf_output.f: ftl_input_code.f  
         \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f  
         cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f  
3106    
3107  ftltafonly:  ftl_input_code.$FS: \$(AD_FILES)
3108          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3109          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3110            @-rm -f ad_config.template
3111  ftl_taf: ftl_taf_output.o \$(OBJFILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3112          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3113            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3114    
3115    ftl_taf_output.$FS: ftl_input_code.$FS
3116            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3117            ls -l ftl_input_code_ftl.$FS
3118            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3119    
3120  ftl_tamc_output.f: ftl_input_code.f  ftltafonly:
3121          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3122          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          ls -l ftl_input_code_ftl.$FS
3123            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3124    
3125    \$(EXE_FTL): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ftl_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3126            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
3127    
3128    ftl_tamc_output.$FS: ftl_input_code.$FS
3129            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3130            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3131    
3132  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3133          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
3134    
3135  # ... SVD ...  # ... SVD ...
3136  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
3137  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
3138            @echo "--->>> Do make svdall afterwards to compile. <<<---"
3139    svdall: svd_touch svd_taf
3140    
3141  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
3142          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
3143    
3144            @echo "--->>> Only COMPILE svd code! <<<---"
3145            @echo "--->>> Assumes you previously <<<---"
3146            @echo "--->>> did make svdtaf        <<<---"
3147    
3148    svd_touch:
3149            @echo "--->>> Only COMPILE svd code! <<<---"
3150            @echo "--->>> Assumes you previously <<<---"
3151            @echo "--->>> did make svdtaf        <<<---"
3152            touch ad_taf_output.$FS ftl_taf_output.$FS
3153            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3154            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3155            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3156            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3157            @-rm -f ad_config.template
3158    
3159  #=========================================  EOF
3160    
3161    fi
3162    
3163    #===  for OpenAD  ========================
3164    
3165    if test "x$OPENAD" != x ; then
3166    
3167    # ============ begin OpenAD specific section ==============
3168    
3169    cat >>$MAKEFILE <<EOF
3170    
3171    # all the source files linked from the various locations:
3172    ALL_LINKED_FILES= \
3173    \$(F77_SRC_FILES) \
3174    \$(C_SRC_FILES) \
3175    \$(H_SRC_FILES) \
3176    \$(F90_SRC_FILES) \
3177    \$(SPECIAL_FILES)
3178    
3179    ifndef OPENADROOT
3180      \$(error "Error:  environment variable OPENADROOT not defined!")
3181    endif
3182    
3183    ifndef XAIFSCHEMAROOT
3184      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
3185    endif
3186    
3187    ifndef XAIFBOOSTERROOT
3188      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
3189    endif
3190    
3191    EOF
3192    
3193    echo "  Add the source list for common block to module conversion "
3194    echo >> $MAKEFILE
3195    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3196    for i in `cat ${OAD_CB2M_FILES}` ; do
3197      echo    " \\" >> $MAKEFILE
3198      printf " $i" >> $MAKEFILE
3199    done
3200    echo >> $MAKEFILE
3201    
3202    echo "  Add the source list for AD code generation"
3203    echo >> $MAKEFILE
3204    printf "AD_FILES = " >> $MAKEFILE
3205    for i in `cat ${OAD_CB2M_FILES}` ; do
3206      echo    " \\" >> $MAKEFILE
3207      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3208    done
3209    AD_FILES=`cat adSrcFiles.tmp`
3210    for i in $AD_FILES ; do
3211      basename=${i%%.f}
3212      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3213      if test -z "$toBeIgnored" ; then
3214        echo    " \\" >> $MAKEFILE
3215        printf " $i" >> $MAKEFILE
3216      fi
3217    done
3218    echo >> $MAKEFILE
3219    rm -f adSrcFiles.tmp
3220    
3221    cat >>$MAKEFILE <<EOF
3222    
3223    adAll: \$(EXE_AD)
3224    .PHONY: adAll
3225    
3226    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3227    
3228    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3229    
3230    .PHONY: adDepend
3231    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3232            \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3233            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3234            -rm -f makedepend.out
3235    
3236    OPENAD_SUPPORT_F90_SRC_FILES = \
3237    w2f__types.F90 \
3238    OAD_active.F90 \
3239    OAD_cp.F90 \
3240    OAD_rev.F90 \
3241    OAD_tape.F90 \
3242    revolve.F90
3243    
3244    OPENAD_SUPPORT_C_SRC_FILES = \
3245    iaddr.c \
3246    timeRatio.c
3247    
3248    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3249            cat \$^ > \$@
3250    
3251    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3252            cat \$^ > \$@
3253    
3254    f95_test.out: f95_test_mods.f90 f95_test.f90
3255            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3256            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3257    
3258    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3259    
3260    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3261    
3262    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3263    
3264    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3265            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3266    
3267    # create sources files modules from header files containing common blocks
3268    %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3269            \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3270    
3271    # create new header files with USE statements for the new modules made above
3272    %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3273            \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3274    
3275    # change the include directives of everybody to refer to  the new header files with the USE statements
3276    %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3277            \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3278    
3279    # makefile debug rule
3280    small_f: \$(CB2M_F90_PP_SRC_FILES)
3281    .PHONY: small_f
3282    
3283    ad_output.txt: \$(EXE_AD)
3284            @printf 'linking data files ... '
3285            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3286            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3287            @printf 'running ... '
3288            @./\$(EXE_AD) > \$@
3289    
3290    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3291            cat \$^ > \$@
3292    
3293    # canonicalizer
3294    ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3295            \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3296    
3297    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3298    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3299            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3300    
3301    # F -> WHIRL
3302    ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3303            \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
3304    
3305    # WHIRL -> XAIF
3306    ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3307            \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3308    
3309    # XAIF -> XAIF'
3310    ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3311            \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3312    
3313    # XAIF' -> WHIRL'
3314    ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3315            \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3316    
3317    # WHIRL' -> F'
3318    ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3319            \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3320    
3321    # insert template directives
3322    ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3323            \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3324    
3325    PPEXTRAS=\$(wildcard \${OADTOOLS}/ad_template.*.F) \${OADTOOLS}/ad_inline.F
3326    # postprocess F'
3327    postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3328            \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i \${OADTOOLS}/ad_inline.f \$<
3329            # the target is a placeholder to trigger a single execution of the rule
3330            touch \$@
3331    # put this so make knows about the postprocessing output
3332    OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
3333    
3334    # link the XAIF schema files
3335    %.xsd:
3336            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3337    
3338    # link the support files:
3339    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3340            \$(LN) \${OADTOOLS}/\$@ .
3341    
3342    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag \$(PPEXTRAS:.F=.f)
3343    
3344    # ============ end OpenAD specific section ==============
3345    
3346  EOF  EOF
3347    
3348    fi
3349    
3350    #=========================================
3351    
3352  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3353      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3354  fi  fi
# Line 1726  for i in $KPPFILES ; do Line 3360  for i in $KPPFILES ; do
3360      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3361          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3362      fi      fi
3363      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3364  done  done
3365    
3366  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1736  for i in $NOOPTFILES ; do Line 3370  for i in $NOOPTFILES ; do
3370      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3371          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3372      fi      fi
3373      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3374      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3375  done  done
3376    
# Line 1750  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3384  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3384  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3385    
3386  # Create special header files  # Create special header files
3387  $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3388  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3389      mv -f $PA