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revision 1.250 by jmc, Fri Apr 5 21:10:55 2013 UTC revision 1.251 by jmc, Sun Jul 21 23:21:36 2013 UTC
# Line 602  EOF Line 602  EOF
602      fi      fi
603  }  }
604    
605    #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
606    #  checking for additional included headers (in case of chain of included header)
607    mpi_headers_do_local_copy() {
608    
609        dBug=0
610        #----- check for additional headers (chain of included headers)
611        listIni=$MPI_HEADER_FILES
612        echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
613        outp=$?
614        #- always check mpif.h (the only mpi-header included in standard MITgcm code)
615        if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
616        if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
617        doCheck=1 ; list2copy='' ; list2check=$listIni
618        while test $doCheck = 1 ; do
619            newList=''
620            for i in $list2check ; do
621             if test -f $MPIINCLUDEDIR/$i ; then
622                newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
623                    sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
624               if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
625               for j in $newInc ; do
626                 echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
627                 outp=$?
628                 if test $outp != 0 ; then
629                    if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
630                    newList="$newList $j"
631                 fi
632               done
633               if test $dBug = 1 ; then echo "" ; fi
634             fi
635            done
636            if test "x$newList" = x ; then doCheck=0
637            else list2check=$newList ; list2copy="$list2copy $newList"
638            fi
639        done
640        list2copy="$MPI_HEADER_FILES $list2copy"
641        if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
642        #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
643        mkListInc=0
644        for i in $list2copy ; do
645            if test -f $MPIINCLUDEDIR/$i ; then
646                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
647                if test $i = 'mpif.h' ; then
648                    perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
649                fi
650                if test $mkListInc = 1 ; then
651                    LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
652                fi
653                if test "x$LOCAL_MPI_HEADERS" = x ; then
654                    LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=1
655                fi
656            fi
657        done
658    }
659    
660  #  Parse the package dependency information  #  Parse the package dependency information
661  get_pdepend_list()  {  get_pdepend_list()  {
662    
# Line 1262  FTL_TAF_FLAGS= Line 1317  FTL_TAF_FLAGS=
1317  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1318  TAMC_EXTRA=  TAMC_EXTRA=
1319    
1320    DIVA=
1321    MPIINCLUDEDIR=
1322    MPI_HEADER_FILES=
1323    LOCAL_MPI_HEADERS=
1324    
1325  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1326  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1327  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
# Line 1277  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDAT Line 1337  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDAT
1337  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1338  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1339  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1340  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1341    
1342  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1343  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
# Line 2498  for i in $INCLUDEDIRS ; do Line 2558  for i in $INCLUDEDIRS ; do
2558      fi      fi
2559  done  done
2560    
2561  if test ! "x$DIVA" = x ; then  if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2562      echo "  Creating the pseudo-MPI include directory"    if test ! "x$MPIINCLUDEDIR" = x ; then
2563      INCLUDES="-I./mpi_headers $INCLUDES"      if test -d $MPIINCLUDEDIR ; then
2564      rm -rf ./mpi_headers          echo "  Creating the pseudo-MPI include directory"
2565      mkdir -p ./mpi_headers          INCLUDES="-I./mpi_headers $INCLUDES"
2566            rm -rf ./mpi_headers
2567      if test "x$MPIINCLUDEDIR" = x ; then          mkdir -p ./mpi_headers
2568          if test "x$MPIHOME" = x ; then          #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2569              MPIHOME='/usr'          #   checking for additional included headers (in case of chain of included
2570          fi          #   header); also set LOCAL_MPI_HEADERS (if not already set)
2571          MPIINCLUDEDIR='$MPIHOME/include'          mpi_headers_do_local_copy
     fi  
   
     if test -r $MPIINCLUDEDIR/mpif.h ; then  
         for i in $MPI_HEADER_FILES; do  
             cp -p $MPIINCLUDEDIR/$i ./mpi_headers  
         done  
   
         perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h  
2572      else      else
2573          echo " We cannot create a copy of mpif.h!"          echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a dir"
2574            echo "WARNING: ==> cannot create pseudo-MPI include directory"
2575  #       exit -1  #       exit -1
2576      fi      fi
2577      fi
2578  fi  fi
2579    
2580  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
# Line 2906  Clean: Line 2960  Clean:
2960          @\$(MAKE) -f \$(MAKEFILE) cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2961          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2962          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
         -rm -f genmake_warnings genmake_errors make.log  
2963    
2964  # remove also the executable, files that "genmake2" generates (except Makefile)  # remove also the executable, files that "genmake2" generates (except Makefile)
2965  #         and output from a run (plus log files from testreport)  #         and output from a run (plus log files from testreport)
# Line 2915  CLEAN: Line 2968  CLEAN:
2968          -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak          -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2969          -rm -f $LOGFILE genmake_state genmake_*optfile          -rm -f $LOGFILE genmake_state genmake_*optfile
2970          -rm -f SIZE.h.mpi genmake.tr_log make.tr_log          -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2971            -rm -rf mpi_headers mnc_test_*
2972          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2973          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2974          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2975          -rm -f *.txt STD* *diagnostics.log datetime          -rm -f *.txt STD* *diagnostics.log datetime
2976          -rm -f *_MIT_CE_000.opt0000 costfunction*0000          -rm -f *_MIT_CE_000.opt0000 costfunction*0000 costfinal
2977          -rm -rf mnc_test_*          -rm -f divided.ctrl snapshot* oad_cp.000.[0-9][0-9][0-9][0-9][0-9]
2978    
2979  makefile:  makefile:
2980          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
# Line 3017  TAF            = ${TAF} Line 3071  TAF            = ${TAF}
3071    
3072  TAF_EXTRA      = ${TAF_EXTRA}  TAF_EXTRA      = ${TAF_EXTRA}
3073  TAMC_EXTRA     = ${TAMC_EXTRA}  TAMC_EXTRA     = ${TAMC_EXTRA}
3074    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3075    
3076  EOF  EOF
3077    

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