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revision 1.69 by edhill, Wed Feb 25 19:12:10 2004 UTC revision 1.249 by utke, Sat Feb 23 04:24:42 2013 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
173  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
175      cpp_options=$1      cpp_options=$1
176      pkg=$2      pkg=$2
177      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
178      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
179      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
180      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
181  }  }
182    
183  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
184  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
185  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
186      cpp_options=$1      cpp_options=$1
187      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
188      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99  
189  }  }
190    
191  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 34  test_for_mpi_in_cpp_eeoptions() { Line 193  test_for_mpi_in_cpp_eeoptions() {
193  test_for_string_in_file() {  test_for_string_in_file() {
194      file=$1      file=$1
195      strng=$2      strng=$2
196      grep -i "$strng" $file > /dev/null 2>&1      grep "$strng" $file > /dev/null 2>&1
197      RETVAL=$?      RETVAL=$?
198      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
199          echo -n "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
200          grep -i "$strng" $file          grep -i "$strng" $file
201          return 1          exit 99
202      fi      fi
203      return 0      return 0
204  }  }
# Line 48  test_for_string_in_file() { Line 207  test_for_string_in_file() {
207  # the package list.  # the package list.
208  expand_pkg_groups() {  expand_pkg_groups() {
209      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
210      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
211          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
212          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
# Line 59  expand_pkg_groups() { Line 217  expand_pkg_groups() {
217              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
218                  matched=1                  matched=1
219                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
220                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
221                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
222              else              else
223                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
# Line 67  expand_pkg_groups() { Line 225  expand_pkg_groups() {
225          done          done
226          PACKAGES=$new_packages          PACKAGES=$new_packages
227          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
228            return $matched
229      else      else
230          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
231      fi      fi
232  }  }
233    
234  # Guess possible config options for this host  #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
235  find_possible_configs()  {  #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
236    check_for_broken_Ff()  {
237        #  Do we have defaults for $FS and/or $FS90 ?
238        tfs=f
239        tfs9=f90
240        if test "x$FS" != x ; then
241            tfs="$FS"
242        fi
243        if test "x$FS90" != x ; then
244            tfs9="$FS90"
245        fi
246    
247      tmp1=`uname`"_"`uname -m`      #  First check the ability to create a *.F/.f pair.
248      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat <<EOF >> genmake_hello.F
249      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`        program hello
250      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`        write(*,*) 'hi'
251      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`        stop
252      PLATFORM=$tmp2        end
253      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`  EOF
254      echo "  The platform appears to be:  $PLATFORM"      cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
       
     echo "test" > test  
     ln -s ./test link  
255      RETVAL=$?      RETVAL=$?
256      if test "x${RETVAL}" = x0 ; then      if test "x$RETVAL" != x0 ; then
257          LN="ln -s"          if test "x$FS" = x ; then
258      else              FS='for'
259          echo "Error: \"ln -s\" does not appear to work on this system!"              FS90='fr9'
260          echo "  For help, please contact <MITgcm-support@mitgcm.org>."              check_for_broken_Ff
261          exit 1          else
262                cat <<EOF 2>&1
263    ERROR: Your file system cannot distinguish between *.F and *.f files
264      (fails the "cp" test) and this program cannot find a suitable
265      replacement extension.  Please try a different build environment or
266      contact the <MITgcm-support@mitgcm.org> list for help.
267    
268    EOF
269                exit -1
270            fi
271            return
272      fi      fi
273      rm -f test link      rm -f genmake_hello.*
274    
275      if test "x$CPP" = x ; then      #  Check the ability of ${MAKE} and ${LN} to use the current set
276          CPP="cpp -traditional -P"      #  of extensions.
277        cat <<EOF >> genmake_hello.F
278          program hello
279          write(*,*) 'hi'
280          stop
281          end
282    EOF
283        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
284        cat <<EOF >> $MAKEFILE
285    .SUFFIXES:
286    .SUFFIXES: .$tfs .F
287    .F.$tfs:
288            $LN \$< \$@
289    EOF
290        $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
291        RETVAL=$?
292        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
293            if test "x$FS" = x ; then
294                FS='for'
295                FS90='fr9'
296                check_for_broken_Ff
297            else
298                echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
299                echo "       see simple makefile: '$MAKEFILE' (left here)"
300                echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
301                echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
302                echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
303                echo ""
304                exit -1
305                return
306            fi
307      fi      fi
308        rm -f genmake_hello.* $MAKEFILE
309        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
310    
311        #  If we make it here, use the extensions
312        FS=$tfs
313        FS90=$tfs9
314        return
315    }
316    
317    look_for_makedepend()  {
318    
319      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
320      #  most often distributed with XFree86 or with an XFree86 source      #  most often distributed with XFree86 or with an XFree86 source
# Line 118  find_possible_configs()  { Line 334  find_possible_configs()  {
334      #    3) locally build and use the cyrus implementation      #    3) locally build and use the cyrus implementation
335      #    4) fall back to the buggy local xmakedpend script      #    4) fall back to the buggy local xmakedpend script
336      #      #
337        echo >> $LOGFILE
338        echo "running: look_for_makedepend()" >> $LOGFILE
339        if test "x${MAKEDEPEND}" != x ; then
340            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
341            RETVAL=$?
342            if test x"$RETVAL" = x0 ; then
343                build_cyrus_makedepend
344                RETVAL=$?
345                if test "x$RETVAL" != x0 ; then
346                    echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'"
347                    MAKEDEPEND=
348                fi
349            else
350                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
351                RETVAL=$?
352                if test "x$RETVAL" = x0 ; then
353                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
354                fi
355                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
356            fi
357        fi
358      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
359        which makedepend >& /dev/null          which makedepend > /dev/null 2>&1
360        RETVAL=$?          RV0=$?
361        if test ! "x${RETVAL}" = x0 ; then          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
362           echo "    a system-default makedepend was not found."          #  echo 'MAKEFILE="'$MAKEFILE'"'
363            cat <<EOF >> $MAKEFILE
364           #  Try to build the cyrus impl  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
365           rm -f ./genmake_cy_md  #
366           (  #   Some "makedepend" implementations will die if they cannot
367               cd $ROOTDIR/tools/cyrus-imapd-makedepend  \  #   find a Makefile -- so this file is here to gives them an
368                   &&  ./configure > /dev/null 2>&1  \  #   empty one to find and parse.
369                   &&  make > /dev/null 2>&1  \  EOF
370                   &&  ./makedepend ifparser.c > /dev/null 2>&1  \          cat <<EOF >> genmake_tc.f
371                   &&  echo "true"        program test
372           ) > ./genmake_cy_md        write(*,*) 'test'
373           grep true ./genmake_cy_md > /dev/null 2>&1        stop
374           RETVAL=$?        end
375           if test "x$RETVAL" = x0 ; then  EOF
376               MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
377           else          RV1=$?
378               MAKEDEPEND='$(TOOLSDIR)/xmakedepend'          test -f $MAKEFILE  &&  rm -f $MAKEFILE
379           fi          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
380           rm -f ./genmake_cy_md          if test "x${RV0}${RV1}" = x00 ; then
381        fi              MAKEDEPEND=makedepend
382                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
383            else
384                echo "    system-default makedepend not found. Try to build cyrus-makedepend"
385                #  Try to build the cyrus implementation
386                build_cyrus_makedepend
387                RETVAL=$?
388                if test "x$RETVAL" != x0 ; then
389                    echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend"
390                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
391                    echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392                fi
393            fi
394      fi      fi
395    }
396    
397      # look for possible fortran compilers  build_cyrus_makedepend()  {
398      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      echo >> $LOGFILE
399      p_FC=      echo "running: build_cyrus_makedepend()" >> $LOGFILE
400        rm -f ./genmake_cy_md
401        (
402            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
403                &&  ./configure > /dev/null 2>&1  \
404                &&  $MAKE > /dev/null 2>&1
405            if test -x ./makedepend.exe ; then
406                $LN ./makedepend.exe ./makedepend
407            fi
408            ./makedepend ifparser.c > /dev/null 2>&1  \
409                &&  echo "true"
410        ) > ./genmake_cy_md
411        grep true ./genmake_cy_md > /dev/null 2>&1
412        RETVAL=$?
413        rm -f ./genmake_cy_md
414        if test "x$RETVAL" = x0 ; then
415            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
416            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
417            return 0
418        else
419            echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
420            return 1
421        fi
422    }
423    
424    build_embed_encode()
425    {
426        printf "  building the embed-encode utility...  "
427        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
428            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
429                echo
430                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
431                echo
432                EMBED_SRC=f
433                return 1
434            fi
435            clist="cc gcc c89 $CC"
436            for ic in $clist ; do
437                comm="$ic -o encode_files encode_files.c"
438                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
439                RETVAL=$?
440                if test "x$RETVAL" = x0 ; then
441                    echo "OK"
442                    return 0
443                fi
444            done
445            echo
446            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
447            echo "      so it has been disabled"
448            echo
449            EMBED_SRC=f
450            return 1
451        fi
452        echo "OK"
453    }
454    
455    #  look for possible C compilers
456    look_for_C_compilers() {
457        echo >> $LOGFILE
458        echo "running: look_for_C_compilers()" >> $LOGFILE
459        rm -f ./genmake_hello.c  ./genmake_hello
460        cat >> genmake_hello.c << EOF
461    #include <stdio.h>
462    int main(int argc, char **argv) {
463      printf("Hello!\n");
464      return 0;
465    }
466    EOF
467        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
468        p_CC=
469      for c in $tmp ; do      for c in $tmp ; do
470          rm -f ./hello.f ./hello          COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
471          cat >> hello.f <<EOF          echo $COMM >> $LOGFILE
472            $COMM >> $LOGFILE 2>&1
473            RETVAL=$?
474            if test "x${RETVAL}" = x0 ; then
475                echo " $c test successful" >> $LOGFILE
476                p_CC="$p_CC $c"
477            fi
478        done
479        rm -f ./genmake_hello.c ./genmake_hello
480        if test "x${p_CC}" = x ; then
481            cat 1>&2 <<EOF
482    
483    Error: No C compilers were found in your path.  Please specify one using:
484    
485        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
486        2) the CC or MITGCM_CC environment variables.
487    
488    EOF
489            exit 1
490        else
491            echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
492            if test "x$CC" = x ; then
493                CC=`echo $p_CC | $AWK '{print $1}'`
494                echo "  Setting C compiler to: "$CC
495            fi
496        fi
497        echo " --> set CC='$CC'" >> $LOGFILE
498    }
499    
500    # Guess possible config options for this host
501    find_possible_optfile()  {
502    
503        echo >> $LOGFILE
504        echo "running: find_possible_optfile()" >> $LOGFILE
505        tmp1=`uname`"_"`uname -m`
506        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
507        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
508        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
509        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
510        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
511        PLATFORM=$tmp3
512        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
513        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
514        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
515    
516        #================================================================
517        #  look for possible FORTRAN compilers
518        echo "  look for possible FORTRAN compilers" >> $LOGFILE
519        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
520        p_FC=
521        rm -f ./genmake_hello.f
522        cat >> genmake_hello.f <<EOF
523        program hello        program hello
524        do i=1,3        do i=1,3
525          print *, 'hello world : ', i          print *, 'hello world : ', i
526        enddo        enddo
527        end        end
528  EOF  EOF
529          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
530            COMM="$f -o genmake_hello genmake_hello.f"
531            echo $COMM >> $LOGFILE
532            $COMM >> $LOGFILE 2>&1
533          RETVAL=$?          RETVAL=$?
534          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
535              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
536                p_FC="$p_FC $f"
537          fi          fi
538      done      done
539      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
540      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
541          cat 1>&2 <<EOF          cat 1>&2 <<EOF
542    
# Line 170  Error: No Fortran compilers were found i Line 544  Error: No Fortran compilers were found i
544    
545      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
546      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
547      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
548    
549  EOF  EOF
550          exit 1          exit 1
551      else      else
552          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
553          echo "   "$p_FC      fi
554          if test "x$FC" = x ; then  
555              FC=`echo $p_FC | $AWK '{print $1}'`      #  Use the first of the compilers found in the current PATH
556              echo "  Setting FORTRAN compiler to: "$FC      #  that has a correctly-named optfile
557          fi      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
558            for i in $p_FC ; do
559                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
560                if test -r $OPTFILE ; then
561                    echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
562                    break
563                fi
564            done
565      fi      fi
566    
567      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
568          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
569          if test ! -r $OPTFILE ; then          if test ! -r $OPTFILE ; then
570               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
571          fi          fi
572      fi      fi
573  #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #   for i in $p_FC ; do  
 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
 #if test -r $p_OF ; then  
 #    OPTFILE=$p_OF  
 #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #    break  
 #fi  
 #   done  
574      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
575          cat 1>&2 <<EOF          cat 1>&2 <<EOF
576    
# Line 215  Error: No options file was found in:  $R Line 586  Error: No options file was found in:  $R
586  EOF  EOF
587          exit 1          exit 1
588      fi      fi
       
 #     # look for possible MPI libraries  
 #     mpi_libs=  
 #     mpi_fort=`which mpif77 2>/dev/null`  
 #     RETVAL=$?  
 #     if test "x${RETVAL}" = x0 ; then  
 #       cat >>test.f <<EOF  
 #       PROGRAM HELLO  
 #       DO 10, I=1,10  
 #       PRINT *,'Hello World'  
 #    10 CONTINUE  
 #       STOP  
 #       END  
 # EOF  
 #       eval "$mpi_fort -showme test.f > out"  
 #       RETVAL=$?  
 #       if test "x${RETVAL}" = x0 ; then  
 #           a=`cat out`  
 #           for i in $a ; do  
 #               case $i in  
 #                   -*)  
 #                       mpi_libs="$mpi_libs $i" ;;  
 #               esac  
 #           done  
 #           echo "The MPI libs appear to be:"  
 #           echo "  "$mpi_libs  
 #       fi  
 #       rm -f test.f out  
 #     fi  
   
589  }  }
590    
591  #  Parse the package dependency information  #  Parse the package dependency information
# Line 253  get_pdepend_list()  { Line 594  get_pdepend_list()  {
594      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
595      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
596      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
597          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
598          > ./.pd_tmp          > ./.pd_tmp
599        RETVAL=$?
600        if test ! "x${RETVAL}" = x0 ; then
601          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
602          exit 1
603        fi
604      . ./.pd_tmp      . ./.pd_tmp
605      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
     echo -n "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from $PATH/include, link to libraries  
           from $PATH/lib and use binaries from $PATH/bin.  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/devel_HOWTO/  
   
 EOF  
   
     exit 1  
606  }  }
607    
608  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
609  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
610    
611        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
612        if test ! "x$FC_NAMEMANGLE" = x ; then
613            return 0
614        fi
615        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
616    
617      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
618        
619      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
620  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
621  EOF  EOF
622      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
623        echo ' '$COMM >> $LOGFILE
624        $COMM >> $LOGFILE 2>&1
625      RETVAL=$?      RETVAL=$?
626      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
627          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
628          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
629    
630  WARNING: C test compile fails   WARNING: C test compile fails
631  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
632  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
633  EOF  EOF
634          return 1          return 1
635      fi      fi
636      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
637      RETVAL=$?      RETVAL=$?
638      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
639          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
640          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
641    
642  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
643  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
644  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
645  EOF  EOF
646          return 1          return 1
647      fi      fi
648      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
649        subroutine tcall( string )        subroutine tcall( string )
650        character*(*) string        character*(*) string
651        call tsub( string )        call tsub( string )
652        end        end
653  EOF  EOF
654      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
655        echo ' '$COMM >> $LOGFILE
656        $COMM >> $LOGFILE 2>&1
657      RETVAL=$?      RETVAL=$?
658      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
659          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
660          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
661    
662  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
663  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
664  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
665  EOF  EOF
666          return 1          return 1
667      fi      fi
668      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
669      RETVAL=$?      RETVAL=$?
670      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
671          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
672          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
673    
674  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
675  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
676  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
677  EOF  EOF
678          return 1          return 1
679      fi      fi
# Line 449  EOF Line 699  EOF
699    
700      #  cleanup the testing files      #  cleanup the testing files
701      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
702    
703        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
704    }
705    
706  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
707        echo >> $LOGFILE
708        echo "running: check_HAVE_CLOC()" >> $LOGFILE
709      get_fortran_c_namemangling      get_fortran_c_namemangling
710      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
711  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 469  void FC_NAMEMANGLE(cloc) ( double *curti Line 722  void FC_NAMEMANGLE(cloc) ( double *curti
722   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
723  }  }
724  EOF  EOF
725      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
726        echo $COMM >> $LOGFILE
727        $COMM >> $LOGFILE 2>&1
728      RET_C=$?      RET_C=$?
729      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
730        program hello        program hello
731        Real*8 wtime        REAL*8 wtime
732        external cloc        external cloc
733        call cloc(wtime)        call cloc(wtime)
734        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
735        end program hello        end
736  EOF  EOF
737      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
738        echo $COMM >> $LOGFILE
739        $COMM >> $LOGFILE 2>&1
740      RET_F=$?      RET_F=$?
741      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
742      RETVAL=$?      RETVAL=$?
743      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
744          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
745      fi      fi
746      rm -f genmake_tc*      rm -f genmake_tc*
747        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
748    }
749    
750    check_HAVE_SIGREG()  {
751        if test ! "x$HAVE_SIGREG" = x ; then
752            return
753        fi
754        echo >> $LOGFILE
755        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
756        get_fortran_c_namemangling
757        cat <<EOF > genmake_tc_1.c
758    $FC_NAMEMANGLE
759    #include <stdlib.h>
760    #include <stdio.h>
761    #include <signal.h>
762    #include <errno.h>
763    #include <ucontext.h>
764    
765    int * ip;
766    
767    static void killhandler(
768        unsigned int sn, siginfo_t  si, struct ucontext *sc )
769    {
770        *ip = *ip + 1;
771        return;
772    }
773    
774    void FC_NAMEMANGLE(sigreg) (int * aip)
775    {
776        struct sigaction s;
777        ip = aip;
778        s.sa_flags = SA_SIGINFO;
779        s.sa_sigaction = (void *)killhandler;
780        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
781            printf("Sigaction returned error = %d\n", errno);
782            exit(0);
783        }
784        return;
785    }
786    EOF
787        COMM="$CC $CFLAGS -c genmake_tc_1.c"
788        echo $COMM >> $LOGFILE
789        $COMM >> $LOGFILE 2>&1
790        RET_C=$?
791        cat <<EOF > genmake_tc_2.$FS
792          program hello
793          integer anint
794          common /iv/ anint
795          external sigreg
796          call sigreg(anint)
797          end
798    EOF
799        cat genmake_tc_2.$FS >> $LOGFILE
800        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
801        echo $COMM >> $LOGFILE
802        $COMM >> $LOGFILE 2>&1
803        RETVAL=$?
804        if test "x$RETVAL" = x0 ; then
805            HAVE_SIGREG=t
806        fi
807        rm -f genmake_tc*
808        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
809    }
810    
811    check_HAVE_SETRLSTK()  {
812        if test ! "x$HAVE_SETRLSTK" = x ; then
813            return
814        fi
815        echo >> $LOGFILE
816        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
817        get_fortran_c_namemangling
818        cat <<EOF > genmake_tc_1.c
819    $FC_NAMEMANGLE
820    #include <sys/time.h>
821    #include <sys/resource.h>
822    #include <unistd.h>
823    void FC_NAMEMANGLE(setrlstk) ()
824    {
825        struct rlimit rls;
826        rls.rlim_cur = RLIM_INFINITY;
827        rls.rlim_max = RLIM_INFINITY;
828        setrlimit(RLIMIT_STACK, &rls);
829        return;
830    }
831    EOF
832        COMM="$CC $CFLAGS -c genmake_tc_1.c"
833        echo $COMM >> $LOGFILE
834        $COMM >> $LOGFILE 2>&1
835        RET_C=$?
836        cat <<EOF > genmake_tc_2.$FS
837          program hello
838          external setrlstk
839          call setrlstk()
840          end
841    EOF
842        cat genmake_tc_2.$FS >> $LOGFILE
843        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
844        echo $COMM >> $LOGFILE
845        $COMM >> $LOGFILE 2>&1
846        RETVAL=$?
847        if test "x$RETVAL" = x0 ; then
848            HAVE_SETRLSTK=t
849        fi
850        rm -f genmake_tc*
851        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
852  }  }
853    
854    check_HAVE_STAT()  {
855        echo >> $LOGFILE
856        echo "running: check_HAVE_STAT()" >> $LOGFILE
857        get_fortran_c_namemangling
858        cat <<EOF > genmake_tc_1.c
859    $FC_NAMEMANGLE
860    #include <stdio.h>
861    #include <stdlib.h>
862    #include <unistd.h>
863    #include <sys/stat.h>
864    #include <sys/types.h>
865    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
866    {
867        char name[512];
868        struct stat astat;
869    
870        name[0] = 'a'; name[1] = '\0';
871        if (! stat(name, &astat))
872            *nbyte = (int)(astat.st_size);
873        else
874            *nbyte = -1;
875    }
876    EOF
877        COMM="$CC $CFLAGS -c genmake_tc_1.c"
878        echo $COMM >> $LOGFILE
879        $COMM >> genmake_tc.log 2>&1
880        RET_C=$?
881        cat <<EOF > genmake_tc_2.$FS
882          program hello
883          integer nbyte
884          call tfsize(nbyte)
885          print *," HELLO WORLD", nbyte
886          end
887    EOF
888        cat genmake_tc_2.$FS >> $LOGFILE
889        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
890        echo $COMM >> $LOGFILE
891        $COMM >> genmake_tc.log 2>&1
892        RETVAL=$?
893        if test "x$RETVAL" = x0 ; then
894            HAVE_STAT=t
895        fi
896        rm -f genmake_tc*
897        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
898    }
899    
900  check_netcdf_libs()  {  check_netcdf_libs()  {
901        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
902            return
903        fi
904        echo >> $LOGFILE
905        echo "running: check_netcdf_libs()" >> $LOGFILE
906      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
907        program fgennc        program fgennc
908  #include "netcdf.inc"  #include "netcdf.inc"
909    EOF
910       #if test ! "x$MPI" = x ; then
911       #    echo '#include "mpif.h"' >> genmake_tnc.F
912       #fi
913        cat <<EOF >> genmake_tnc.F
914        integer iret, ncid, xid        integer iret, ncid, xid
915        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
916        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
# Line 504  check_netcdf_libs()  { Line 920  check_netcdf_libs()  {
920        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
921        end        end
922  EOF  EOF
923      $CPP genmake_tnc.F > genmake_tnc.f  \      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
924          &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1      cat genmake_tnc.F >> genmake_tnc.log
925        echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
926        RET_CPP=f
927        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
928        echo "$COMM" >> genmake_tnc.log
929        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
930        if test "x$RET_CPP" = xf ; then
931            echo "  WARNING: CPP failed to pre-process the netcdf test." \
932                >> genmake_tnc.log
933            echo "    Please check that \$INCLUDES is properly set." \
934                >> genmake_tnc.log
935        fi
936        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
937        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
938        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
939            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
940      RET_COMPILE=$?      RET_COMPILE=$?
941      test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1      cat genmake_tnc.log >> $LOGFILE
942      RETVAL=$?  
943      if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then      #EH3  Remove test program execution for machines that either disallow
944        #EH3  execution or cannot support it (eg. cross-compilers)
945        #EH3
946        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
947        #EH3 RETVAL=$?
948        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
949    
950        if test "x$RET_COMPILE" = x0 ; then
951          HAVE_NETCDF=t          HAVE_NETCDF=t
952            echo "check_netcdf: successful" >> $LOGFILE
953      else      else
954          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
955          $CPP genmake_tnc.F > genmake_tnc.f  \          echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
956              &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
957              $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
958            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
959            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
960                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
961                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
962          RET_COMPILE=$?          RET_COMPILE=$?
963          test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1          echo >> $LOGFILE
964          RETVAL=$?          cat genmake_tnc.log >> $LOGFILE
965          if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
966              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
967              HAVE_NETCDF=t              HAVE_NETCDF=t
968                echo "check_netcdf: successful" >> $LOGFILE
969          else          else
970              cat genmake_tnc.log >> genmake_warnings          # try again with "-lnetcdff" added to the libs
971                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
972                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
973                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
974                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
975                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
976                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
977                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
978                RET_COMPILE=$?
979                echo >> $LOGFILE
980                cat genmake_tnc.log >> $LOGFILE
981                if test "x$RET_COMPILE" = x0 ; then
982                    LIBS="$LIBS -lnetcdff -lnetcdf"
983                    HAVE_NETCDF=t
984                    echo "check_netcdf: successful" >> $LOGFILE
985                fi
986          fi          fi
987      fi      fi
988      rm -f genmake_tnc*      rm -f genmake_tnc*
989        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
990    }
991    
992    check_lapack_libs()  {
993        if test ! "x$SKIP_LAPACK_CHECK" = x ; then
994            return
995        fi
996        echo >> $LOGFILE
997        echo "running: check_lapack_libs()" >> $LOGFILE
998        cat <<EOF > genmake_tla.F
999          program fgenla
1000          integer info
1001          integer ipiv( 2 )
1002          double precision ab( 4, 2 ), b( 2 )
1003          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1004          data b / 1., 1. /
1005          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1006          IF (info .NE. 0) write(*,*) 'Error:', info
1007          write(*,*) b
1008          end
1009    EOF
1010        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1011        cat genmake_tla.F >> genmake_tla.log
1012        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1013        RET_CPP=f
1014        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1015        echo "$COMM" >> genmake_tla.log
1016        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1017        if test "x$RET_CPP" = xf ; then
1018            echo "  WARNING: CPP failed to pre-process the lapack test." \
1019                >> genmake_tla.log
1020            echo "    Please check that \$INCLUDES is properly set." \
1021                >> genmake_tla.log
1022        fi
1023        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1024        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1025        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1026            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1027        RET_COMPILE=$?
1028        cat genmake_tla.log >> $LOGFILE
1029    
1030        # test program execution not always possible (see check_netcdf_libs)
1031        #
1032        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1033        #RETVAL=$?
1034        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1035    
1036        if test "x$RET_COMPILE" = x0 ; then
1037            HAVE_LAPACK=t
1038            echo "check_lapack: successful" >> $LOGFILE
1039        else
1040            # try again with "-llapack" added to the libs
1041            echo "==> try again with added '-llapack'" > genmake_tla.log
1042            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1043            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1044            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1045            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1046                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1047                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1048            RET_COMPILE=$?
1049            echo >> $LOGFILE
1050            cat genmake_tla.log >> $LOGFILE
1051            if test "x$RET_COMPILE" = x0 ; then
1052                LIBS="$LIBS -llapack"
1053                HAVE_LAPACK=t
1054                echo "check_lapack: successful" >> $LOGFILE
1055            else
1056            # try again with "-lf77blas -lcblas" added to the libs
1057                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1058                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1059                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1060                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1061                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1062                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1063                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1064                RET_COMPILE=$?
1065                echo >> $LOGFILE
1066                cat genmake_tla.log >> $LOGFILE
1067                if test "x$RET_COMPILE" = x0 ; then
1068                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1069                    HAVE_LAPACK=t
1070                    echo "check_lapack: successful" >> $LOGFILE
1071                else
1072                # try again with "-latlas" added to the libs
1073                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1074                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1075                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1076                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1077                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1078                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1079                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1080                    RET_COMPILE=$?
1081                    echo >> $LOGFILE
1082                    cat genmake_tla.log >> $LOGFILE
1083                    if test "x$RET_COMPILE" = x0 ; then
1084                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1085                        HAVE_LAPACK=t
1086                        echo "check_lapack: successful" >> $LOGFILE
1087                    fi
1088                fi
1089            fi
1090        fi
1091        rm -f genmake_tla*
1092        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1093  }  }
1094    
1095    check_HAVE_FLUSH()  {
1096        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1097            return
1098        fi
1099        echo >> $LOGFILE
1100        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1101        cat <<EOF > genmake_tflsh.$FS
1102          program fgenflsh
1103          integer iounit
1104          character*9 fname
1105          iounit = 26
1106          fname = 'tmp.tflsh'
1107          open(iounit,FILE=fname,STATUS='unknown')
1108          write(iounit,*) 'genmake_tflsh: hello'
1109          call flush(iounit)
1110          close(iounit)
1111          end
1112    EOF
1113        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1114        cat genmake_tflsh.$FS >> genmake_tflsh.log
1115        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1116    
1117        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1118        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1119        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1120            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1121        RET_COMPILE=$?
1122    
1123        if test "x$RET_COMPILE" = x0 ; then
1124            HAVE_FLUSH=t
1125            #cat genmake_tflsh.log >> $LOGFILE
1126            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1127        else
1128            HAVE_FLUSH=f
1129            cat genmake_tflsh.log >> $LOGFILE
1130        fi
1131        rm -f genmake_tflsh*
1132        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1133    }
1134    
1135  ###############################################################################  ###############################################################################
1136  #   Sequential part of script starts here  #   Sequential part of script starts here
# Line 542  PLATFORM= Line 1143  PLATFORM=
1143  LN=  LN=
1144  S64=  S64=
1145  KPP=  KPP=
1146  FC=  #FC=
1147  CPP=  #CC=gcc
1148    #CPP=
1149  LINK=  LINK=
1150  DEFINES=  DEFINES=
1151  PACKAGES=  PACKAGES=
1152  ENABLE=  ENABLE=
1153  DISABLE=  DISABLE=
1154  MAKEFILE=  # MAKEFILE=
1155  MAKEDEPEND=  # MAKEDEPEND=
1156  PDEPEND=  PKG_DEPEND=
1157  DUMPSTATE=t  PKG_GROUPS=
1158  PDEFAULT=  DUMPSTATE=f
1159  OPTFILE=  OPTFILE=
1160  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1161  FFLAGS=  FFLAGS=
1162  FOPTIM=  FOPTIM=
1163    FEXTRAFLAGS=
1164    USE_EXTENDED_SRC=
1165    EXTENDED_SRC_FLAG=
1166    GET_FC_VERSION=
1167  CFLAGS=  CFLAGS=
1168  KFLAGS1=  KFLAGS1=
1169  KFLAGS2=  KFLAGS2=
1170    #LDADD=
1171  LIBS=  LIBS=
1172  KPPFILES=  KPPFILES=
1173  NOOPTFILES=  NOOPTFILES=
1174  NOOPTFLAGS=  NOOPTFLAGS=
1175  MPI=  MPI=
1176  MPIPATH=  MPIPATH=
1177    OMP=
1178    OMPFLAG=
1179    USE_R4=
1180    TS=
1181    PAPIS=
1182    PCLS=
1183    FOOLAD=
1184    PAPI=
1185    PCL=
1186    HPMT=
1187    GSL=
1188    DEVEL=
1189    HAVE_TEST_L=
1190    
1191  # DEFINES checked by test compilation  # comment this line out to enable lapack test
1192    SKIP_LAPACK_CHECK=t
1193    
1194    # DEFINES checked by test compilation or command-line
1195  HAVE_SYSTEM=  HAVE_SYSTEM=
1196  HAVE_FDATE=  HAVE_FDATE=
1197  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1198  HAVE_CLOC=  HAVE_CLOC=
1199    # HAVE_SETRLSTK=
1200    HAVE_STAT=
1201  HAVE_NETCDF=  HAVE_NETCDF=
1202    HAVE_ETIME=
1203    IGNORE_TIME=
1204    HAVE_LAPACK=
1205    HAVE_FLUSH=
1206    
1207  MODS=  MODS=
1208  TOOLSDIR=  TOOLSDIR=
# Line 581  SOURCEDIRS= Line 1210  SOURCEDIRS=
1210  INCLUDEDIRS=  INCLUDEDIRS=
1211  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1212    
1213    #- local config file
1214    gm_local="genmake_local"
1215    
1216    G2ARGS=
1217    BASH=
1218  PWD=`pwd`  PWD=`pwd`
1219  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1220  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1221  THISHOSTNAME=`hostname`  EMBED_SRC=
1222    THISHOST=`hostname`
1223  THISCWD=`pwd`  THISCWD=`pwd`
1224  THISDATE=`date`  THISDATE=`date`
1225    THISUSER=`echo $USER`
1226    THISVER=
1227  MACHINE=`uname -a`  MACHINE=`uname -a`
1228  EXECUTABLE=  EXECUTABLE=
1229  EXEHOOK=  EXEHOOK=
1230  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1231  IEEE=  IEEE=
1232  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1233      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1234  fi  fi
1235    FS=
1236    FS90=
1237    
1238  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1239  AD_OPTFILE=  AD_OPTFILE=
# Line 610  FTL_TAF_FLAGS= Line 1248  FTL_TAF_FLAGS=
1248  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1249  TAMC_EXTRA=  TAMC_EXTRA=
1250    
   
1251  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1252  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1253  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1254    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1255    
1256  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1257  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1258  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1259  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1260  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1261  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1262    
1263  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1264  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1265  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1266  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA"
1267    
1268  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1269  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1270    
1271  cat <<EOF  cat <<EOF
1272    
1273  GENMAKE :  GENMAKE :
1274    
1275  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1276  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1277    or for more detail see the Developer's HOWTO manual at:
1278    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1279    
1280  EOF  EOF
1281    
1282    LOGFILE="genmake.log"
1283    #- clean-up previous genmake logfiles:
1284    rm -f genmake_state genmake_*optfile $LOGFILE
1285    
1286  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1287    
1288  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1289  #parse_options  #parse_options
1290  ac_prev=  ac_prev=
1291  for ac_option ; do  for ac_option in "$@" ; do
1292    
1293        G2ARGS="$G2ARGS \"$ac_option\""
1294    
1295      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1296      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 679  for ac_option ; do Line 1298  for ac_option ; do
1298          ac_prev=          ac_prev=
1299          continue          continue
1300      fi      fi
1301        
1302      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1303        
1304      case $ac_option in      case $ac_option in
1305            
1306          -help | --help | -h | --h)          -help | --help | -h | --h)
1307              usage ;;              usage ;;
1308            
1309          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1310              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1311          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1312              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1313          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1314              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1315            
1316          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1317              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1318          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1319              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1320            
1321          -pdepend | --pdepend)          -pdepend | --pdepend)
1322              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1323          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1324              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1325            
1326          -pdefault | --pdefault)          -pgroups | --pgroups)
1327              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1328          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1329              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1330            
1331          -make | --make | -m | --m)          -make | --make | -m | --m)
1332              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1333          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1334              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1335            
1336            -bash | --bash)
1337                ac_prev=BASH ;;
1338            -bash=* | --bash=*)
1339                BASH=$ac_optarg ;;
1340    
1341          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1342              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1343          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
1344              MAKEDEPEND=$ac_optarg ;;              MAKEDEPEND=$ac_optarg ;;
1345            
1346          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -mf | --mf)
1347              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1348          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1349              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1350            
1351          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1352              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1353              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1354              echo              echo
1355              usage              usage
1356              ;;              ;;
1357            
1358          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1359              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1360          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1361              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1362            
1363          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1364              ac_prev=MODS ;;              ac_prev=MODS ;;
1365          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1366              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1367            
1368          -disable | --disable)          -disable | --disable)
1369              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1370          -disable=* | --disable=*)          -disable=* | --disable=*)
1371              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1372            
1373          -enable | --enable)          -enable | --enable)
1374              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1375          -enable=* | --enable=*)          -enable=* | --enable=*)
1376              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1377            
1378          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1379              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1380          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 760  for ac_option ; do Line 1384  for ac_option ; do
1384  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1385  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1386  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1387                
1388            -cc | --cc)
1389                ac_prev=CC ;;
1390            -cc=* | --cc=*)
1391                CC=$ac_optarg ;;
1392    
1393          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1394              ac_prev=FC ;;              ac_prev=FC ;;
1395          -fc=* | --fc=*)          -fc=* | --fc=*)
1396              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1397            
1398            -fs | --fs)
1399                ac_prev=FS ;;
1400            -fs=* | --fs=*)
1401                FS=$ac_optarg ;;
1402    
1403            -fs90 | --fs90)
1404                ac_prev=FS90 ;;
1405            -fs90=* | --fs90=*)
1406                FS90=$ac_optarg ;;
1407    
1408            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1409                USE_R4=true ;;
1410    
1411          -ieee | --ieee)          -ieee | --ieee)
1412              IEEE=true ;;              IEEE=true ;;
1413          -noieee | --noieee)          -noieee | --noieee)
1414              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1415            -devel | --devel)
1416                IEEE=true ; DEVEL=true ;;
1417            -gsl | --gsl)
1418                GSL=true ;;
1419    
1420            -ts | --ts)
1421                TS=true ;;
1422            -papis | --papis)
1423                PAPIS=true ;;
1424            -pcls | --pcls)
1425                PCLS=true ;;
1426            -foolad | --foolad)
1427                FOOLAD=true ;;
1428            -papi | --papi)
1429                PAPI=true ;;
1430            -pcl | --pcl)
1431                PCL=true ;;
1432            -hpmt | --hpmt)
1433                HPMT=true ;;
1434    
1435          -mpi | --mpi)          -mpi | --mpi)
1436              MPI=true ;;              MPI=true ;;
1437          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1438              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1439              MPI=true ;;              MPI=true ;;
1440            
1441  #       -jam | --jam)          -omp | --omp)
1442  #           JAM=1 ;;              OMP=true ;;
1443  #       -nojam | --nojam)          -omp=* | --omp=*)
1444  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1445                        OMP=true ;;
1446    
1447          -ds | --ds)          -ds | --ds)
1448              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1449            
1450            -extra_flag | --extra_flag)
1451                ac_prev=FEXTRAFLAGS ;;
1452            -extra_flag=* | --extra_flag=*)
1453                FEXTRAFLAGS=$ac_optarg ;;
1454    
1455          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1456              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1457          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 795  for ac_option ; do Line 1462  for ac_option ; do
1462          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1463              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1464    
1465            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1466                IGNORE_TIME="-DIGNORE_TIME" ;;
1467    
1468            -es | --es | -embed-source | --embed-source)
1469                EMBED_SRC=t ;;
1470    
1471          -*)          -*)
1472              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1473              usage              usage
1474              ;;              ;;
1475            
1476          *)          *)
1477              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1478              usage              usage
1479              ;;              ;;
1480            
1481      esac      esac
1482        
1483  done  done
1484    
1485    printf "  getting local config information:  "
1486    if test -f $gm_local ; then
1487        echo "using $gm_local"
1488        . $gm_local
1489    else
1490        echo "none found"
1491    fi
1492    
1493  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1494      echo      echo
1495      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1496      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1497      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1498      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1499        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1500        echo "WARNING: ignore \"./.genmakerc\" and continue."
1501      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1502  fi  fi
1503    
1504    #  Find the MITgcm ${ROOTDIR}
1505  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1506      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1507        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1508          ROOTDIR=".."          ROOTDIR=".."
1509      else      else
1510          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1511              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1512                  ROOTDIR=$d                  ROOTDIR=$d
1513                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1514                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1515                  break                  break
1516              fi              fi
1517          done          done
# Line 846  if test ! -d ${ROOTDIR} ; then Line 1528  if test ! -d ${ROOTDIR} ; then
1528      exit 1      exit 1
1529  fi  fi
1530    
1531  echo "  getting OPTFILE information:  "  #  Find the MITgcm ${THISVER}
1532    version_file="${ROOTDIR}/doc/tag-index"
1533    if test -f $version_file ; then
1534        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1535    #-  remove ./BUILD_INFO.h file if older than version_file
1536        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1537            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1538            rm -f ./BUILD_INFO.h
1539        fi
1540    fi
1541    
1542    if test "x$MAKEFILE" = x ; then
1543        MAKEFILE="Makefile"
1544    fi
1545    
1546    echo "  getting OPTFILE information:"
1547  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1548      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1549          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1550          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1551          find_possible_configs          find_possible_optfile
1552      else      else
1553          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1554      fi      fi
# Line 862  if test "x$OPTFILE" != xNONE ; then Line 1559  if test "x$OPTFILE" != xNONE ; then
1559          . "$OPTFILE"          . "$OPTFILE"
1560          RETVAL=$?          RETVAL=$?
1561          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1562              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1563              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1564              exit 1              exit 1
1565          fi          fi
1566          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1567              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1568          fi          fi
1569      else      else
# Line 875  if test "x$OPTFILE" != xNONE ; then Line 1572  if test "x$OPTFILE" != xNONE ; then
1572      fi      fi
1573  fi  fi
1574    
1575  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1576  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1577      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
1578          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
# Line 889  if test "x${AD_OPTFILE}" != xNONE ; then Line 1586  if test "x${AD_OPTFILE}" != xNONE ; then
1586          . "$AD_OPTFILE"          . "$AD_OPTFILE"
1587          RETVAL=$?          RETVAL=$?
1588          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1589              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1590              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1591              exit 1              exit 1
1592          fi          fi
1593          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1594              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1595          fi          fi
1596      else      else
# Line 902  if test "x${AD_OPTFILE}" != xNONE ; then Line 1599  if test "x${AD_OPTFILE}" != xNONE ; then
1599      fi      fi
1600  fi  fi
1601    
1602  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #====================================================================
1603    #  Set default values if not set by the optfile
1604    #
1605    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1606  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1607    if test ! "x$BASH" = x ; then
1608        # add a trailing space so that it works within the Makefile syntax (see below)
1609        BASH="$BASH "
1610    fi
1611  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1612      cat <<EOF 1>&2      cat <<EOF 1>&2
1613    
# Line 914  Error: no Fortran compiler: please speci Line 1618  Error: no Fortran compiler: please speci
1618  EOF  EOF
1619      exit 1      exit 1
1620  fi  fi
1621    if test "x$GET_FC_VERSION" != x ; then
1622      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1623      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1624      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1625      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1626      if test -s genmake_fc_vers1 ; then
1627        cat genmake_fc_vers1 >> $LOGFILE
1628      else
1629        cat genmake_fc_vers2 >> $LOGFILE
1630      fi
1631      echo "<-- compiler version ----" >> $LOGFILE
1632      rm -f genmake_fc_vers1 genmake_fc_vers2
1633    fi
1634    
1635    if test "x$CC" = x ; then
1636        look_for_C_compilers
1637    fi
1638    
1639  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1640      LINK=$FC      LINK=$FC
1641  fi  fi
# Line 921  if test "x$MAKE" = x ; then Line 1643  if test "x$MAKE" = x ; then
1643      MAKE="make"      MAKE="make"
1644  fi  fi
1645  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1646      CPP=cpp      CPP="cpp -traditional -P"
1647  fi  fi
1648  #EH3 === UGLY ===  #EH3 === UGLY ===
1649  #  The following an ugly little hack to check for $CPP in /lib/ and it  #  The following is an ugly little hack to check for $CPP in /lib/ and
1650  #  should eventually be replaced with a more general function that  #  it should eventually be replaced with a more general function that
1651  #  searches a combo of the user's path and a list of "usual suspects"  #  searches a combo of the user's path and a list of "usual suspects"
1652  #  to find the correct location for binaries such as $CPP.  #  to find the correct location for binaries such as $CPP.
1653  for i in " " "/lib/" ; do  for i in " " "/lib/" ; do
# Line 948  EOF Line 1670  EOF
1670  else  else
1671      rm -f test_cpp      rm -f test_cpp
1672  fi  fi
1673  if test "x$MAKEDEPEND" = x ; then  
1674      MAKEDEPEND=makedepend  look_for_makedepend
1675  fi  
1676    #  Check that soft-link command is set and usable
1677  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1678      LN="ln -s"      LN="ln -s"
1679  fi  fi
# Line 960  RETVAL=$? Line 1683  RETVAL=$?
1683  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1684      cat <<EOF 1>&2      cat <<EOF 1>&2
1685    
1686  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1687    command in the optfile.    command in the optfile.
1688    
1689  EOF  EOF
1690      exit 1      exit 1
1691  fi  fi
1692    test -L genmake_tlink > /dev/null 2>&1
1693    RETVAL=$?
1694    if test "x$RETVAL" = x0 ; then
1695        HAVE_TEST_L=t
1696    fi
1697  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1698    
1699    #  Check for broken *.F/*.f handling and fix if possible
1700    check_for_broken_Ff
1701    
1702  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1703        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1704        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI"
1705    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1706    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1707    fi
1708    if test ! "x$OMP" = x ; then
1709          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1710          FFLAGS="$FFLAGS $OMPFLAG"
1711          F90FLAGS="$F90FLAGS $OMPFLAG"
1712          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1713    fi
1714    
1715    if test ! "x$USE_R4" = x ; then
1716          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1717          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1718    fi
1719    
1720    if test ! "x$TS" = x ; then
1721          echo "  Turning on timing per timestep"
1722          if test ! "x$FOOLAD" = x ; then
1723                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1724          else
1725                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1726          fi
1727          PACKAGES="$PACKAGES showflops"
1728    fi
1729    if test ! "x$PAPIS" = x ; then
1730          echo "  Turning on PAPI flop summary per timestep"
1731          echo "  Please make sure PAPIINC, PAPILIB are defined"
1732          if test ! "x$FOOLAD" = x ; then
1733                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1734          else
1735                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1736          fi
1737          INCLUDES="$INCLUDES $PAPIINC"
1738          LIBS="$LIBS $PAPILIB"
1739          PACKAGES="$PACKAGES showflops"
1740    fi
1741    if test ! "x$PCLS" = x ; then
1742          echo "  Turning on PCL counter summary per timestep"
1743          echo "  Please make sure PCLINC, PCLLIB are defined"
1744          if test ! "x$FOOLAD" = x ; then
1745                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1746          else
1747                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1748          fi
1749          INCLUDES="$INCLUDES $PCLINC"
1750          LIBS="$LIBS $PCLLIB"
1751          PACKAGES="$PACKAGES showflops"
1752    fi
1753    if test ! "x$PAPI" = x ; then
1754          if test ! "x$PAPIS" = x ; then
1755              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1756              echo "  Sticking with PAPI flop summary per timestep!"
1757          else
1758              echo "  Turning on performance analysis with PAPI"
1759              echo "  Please make sure PAPIINC, PAPILIB are defined"
1760              DEFINES="$DEFINES -DUSE_PAPI"
1761              INCLUDES="$INCLUDES $PAPIINC"
1762              LIBS="$LIBS $PAPILIB"
1763          fi
1764    fi
1765    if test ! "x$PCL" = x ; then
1766          if test ! "x$PCLS" = x ; then
1767              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1768              echo "  Sticking with PCL flop summary per timestep!"
1769          else
1770              echo "  Turning on performance analysis with PCL"
1771              echo "  Please make sure PCLINC, PCLLIB are defined"
1772              DEFINES="$DEFINES -DUSE_PCL"
1773              INCLUDES="$INCLUDES $PCLINC"
1774              LIBS="$LIBS $PCLLIB"
1775          fi
1776    fi
1777    if test ! "x$HPMT" = x ; then
1778          if test ! "x$PAPI" = x ; then
1779              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1780              echo "  Sticking with PAPI!"
1781          else
1782            if test ! "x$PCL" = x ; then
1783              echo "  PCL and the HPM Toolkit cannot co-exist!"
1784              echo "  Sticking with PCL!"
1785            else
1786              echo "  Turning on performance analysis with the HPM Toolkit"
1787              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1788              DEFINES="$DEFINES -DUSE_LIBHPM"
1789              INCLUDES="$INCLUDES $HPMTINC"
1790              LIBS="$LIBS $HPMTLIB"
1791            fi
1792          fi
1793    fi
1794    if test ! "x$GSL" = x ; then
1795          echo "  Turning on use of GSL to control floating point calculations"
1796          echo "  Please make sure GSLINC, GSLLIB are defined"
1797          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1798          INCLUDES="$INCLUDES $GSLINC"
1799          LIBS="$LIBS $GSLLIB"
1800    fi
1801    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1802    if test ! "x$USE_EXTENDED_SRC" = x ; then
1803          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1804          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1805  fi  fi
1806    
1807  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1808  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1809  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1810        program hello        program hello
1811        call system('echo hi')        call system('echo hi')
1812        end        end
1813  EOF  EOF
1814  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1815  RETVAL=$?  RETVAL=$?
1816  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1817      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 992  else Line 1823  else
1823  fi  fi
1824  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1825    
1826  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1827  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1828        program hello        program hello
1829        CHARACTER(128) string        CHARACTER*(128) string
1830        string = ' '        string = ' '
1831        call fdate( string )        call fdate( string )
1832        print *, string        print *, string
1833        end        end
1834  EOF  EOF
1835  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1836  RETVAL=$?  RETVAL=$?
1837  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1838      HAVE_FDATE=t      HAVE_FDATE=t
# Line 1013  else Line 1844  else
1844  fi  fi
1845  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1846    
1847  echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1848    cat > genmake_tcomp.$FS <<EOF
1849          program hello
1850          REAL*4 ACTUAL, TARRAY(2)
1851          EXTERNAL ETIME
1852          REAL*4 ETIME
1853          actual = etime( tarray )
1854          print *, tarray
1855          end
1856    EOF
1857    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1858    RETVAL=$?
1859    if test "x$RETVAL" = x0 ; then
1860        HAVE_ETIME=t
1861        DEFINES="$DEFINES -DHAVE_ETIME"
1862        echo "yes"
1863    else
1864        HAVE_ETIME=
1865        echo "no"
1866    fi
1867    rm -f genmake_tcomp*
1868    
1869    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1870  check_HAVE_CLOC  check_HAVE_CLOC
1871  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1872        DEFINES="$DEFINES -DHAVE_CLOC"
1873        echo "yes"
1874    else
1875        echo "no"
1876        if test "x$EMBED_SRC" = xt ; then
1877            echo "    WARNING: you requested file embedding but it has"
1878            echo "      been disabled since C code cannot be called"
1879            EMBED_SRC=
1880        fi
1881    fi
1882    rm -f genmake_t*
1883    
1884    printf "  Can we unlimit the stack size using $FC...  "
1885    check_HAVE_SETRLSTK
1886    if test "x$HAVE_SETRLSTK" = xt ; then
1887        DEFINES="$DEFINES -DHAVE_SETRLSTK"
1888        echo "yes"
1889    else
1890        echo "no"
1891    fi
1892    rm -f genmake_t*
1893    
1894    printf "  Can we register a signal handler using $FC...  "
1895    check_HAVE_SIGREG
1896    if test "x$HAVE_SIGREG" = xt ; then
1897        DEFINES="$DEFINES -DHAVE_SIGREG"
1898      echo "yes"      echo "yes"
1899  else  else
1900      echo "no"      echo "no"
1901  fi  fi
1902  rm -f genmake_t*  rm -f genmake_t*
1903    
1904  echo -n "  Can we create NetCDF-enabled binaries...  "  printf "  Can we use stat() through C calls...  "
1905    check_HAVE_STAT
1906    if test "x$HAVE_STAT" != x ; then
1907        DEFINES="$DEFINES -DHAVE_STAT"
1908        echo "yes"
1909    else
1910        echo "no"
1911    fi
1912    rm -f genmake_t*
1913    
1914    printf "  Can we create NetCDF-enabled binaries...  "
1915  check_netcdf_libs  check_netcdf_libs
1916  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
1917        DEFINES="$DEFINES -DHAVE_NETCDF"
1918        echo "yes"
1919    else
1920        echo "no"
1921    fi
1922    
1923    printf "  Can we create LAPACK-enabled binaries...  "
1924    check_lapack_libs
1925    if test "x$HAVE_LAPACK" != x ; then
1926        DEFINES="$DEFINES -DHAVE_LAPACK"
1927        echo "yes"
1928    else
1929        echo "no"
1930    fi
1931    
1932    printf "  Can we call FLUSH intrinsic subroutine...  "
1933    check_HAVE_FLUSH
1934    if test "x$HAVE_FLUSH" = xt ; then
1935        DEFINES="$DEFINES -DHAVE_FLUSH"
1936      echo "yes"      echo "yes"
1937  else  else
1938      echo "no"      echo "no"
1939  fi  fi
1940    
1941    DEFINES="$DEFINES $IGNORE_TIME"
1942    if test "x$EMBED_SRC" = xt ; then
1943        build_embed_encode
1944    fi
1945    if test "x$EMBED_SRC" = xt ; then
1946        ENABLE="$ENABLE embed_files"
1947    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
1948    fi
1949    
1950  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1951  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1952  for d in $MODS ; do  for d in $MODS ; do
1953      if test ! -d $d ; then      if test ! -d $d ; then
1954          echo          echo
1955          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1956          exit 1          exit 1
1957      else      else
1958          echo -n " $d"          printf "$d "
1959          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1960          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1961      fi      fi
1962  done  done
1963  echo  echo
1964    
1965  if test "x$MAKEFILE" = x ; then  #if test "x${PLATFORM}" = x ; then
1966      MAKEFILE="Makefile"  #    PLATFORM=$p_PLATFORM
1967  fi  #fi
 if test "x${PLATFORM}" = x ; then  
     PLATFORM=$p_PLATFORM  
 fi  
1968    
1969  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1970      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1971        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1972          EXEDIR=../exe          EXEDIR=../exe
1973      else      else
1974          EXEDIR=.          EXEDIR=.
# Line 1073  if test ! -d ${TOOLSDIR} ; then Line 1987  if test ! -d ${TOOLSDIR} ; then
1987      exit 1      exit 1
1988  fi  fi
1989  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1990      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1991        RETVAL=$?
1992        if test "x${RETVAL}" = x0 ; then
1993            S64='$(TOOLSDIR)/set64bitConst.sh'
1994        else
1995            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1996            RETVAL=$?
1997            if test "x${RETVAL}" = x0 ; then
1998                S64='$(TOOLSDIR)/set64bitConst.csh'
1999            else
2000                cat <<EOF
2001    
2002    ERROR: neither of the two default scripts:
2003    
2004        ${TOOLSDIR}/set64bitConst.sh
2005        ${TOOLSDIR}/set64bitConst.csh
2006    
2007      are working so please check paths or specify (with \$S64) a
2008      working version of this script.
2009    
2010    EOF
2011                exit 1
2012            fi
2013        fi
2014  fi  fi
2015  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
2016    
2017  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2018    
2019    #  Set Standard Code Directories:
2020    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2021        STANDARDDIRS="eesupp model"
2022    fi
2023    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2024    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2025    ckM=$?
2026    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2027    ckE=$?
2028    if test $ckM = 0 -a $ckE = 1 ; then
2029        STANDARDDIRS="$STANDARDDIRS eesupp"
2030    fi
2031    
2032  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2033  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2034  #  they appear as regular source code  #  they appear as regular source code
2035  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2036      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2037      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2038        ) > make_eesupp.errors 2>&1
2039      RETVAL=$?      RETVAL=$?
2040      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2041          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 1095  if test -r $ROOTDIR"/eesupp/src/Makefile Line 2046  if test -r $ROOTDIR"/eesupp/src/Makefile
2046      fi      fi
2047  fi  fi
2048    
2049  #same for exch2  #same for pkg/exch2 and pkg/regrid
2050  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
2051      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2052      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
2053      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2054      if test "x${RETVAL}" = x0 ; then          ) > make_${pdir}.errors 2>&1
2055          rm -f make_exch2.errors          RETVAL=$?
2056      else          if test "x${RETVAL}" = x0 ; then
2057          echo "Error: problem encountered while building source files in exch2:"              rm -f make_${pdir}.errors
2058          cat make_exch2.errors 1>&2          else
2059          exit 1              echo "Error: problem encountered while building source files in pkg/${pdir}:"
2060                cat make_${pdir}.errors 1>&2
2061                exit 1
2062            fi
2063      fi      fi
2064  fi  done
2065    
2066  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2067  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2068      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2069      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2070          PDEPEND=$tmp  fi
2071      else  if  test "x${PKG_DEPEND}" = x ; then
2072          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2073          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2074  else  else
2075      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2076          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2077          exit 1          exit 1
2078      fi      fi
2079        echo "  getting package dependency info from  $PKG_DEPEND"
2080    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2081        get_pdepend_list $PKG_DEPEND
2082  fi  fi
2083  echo "  getting package dependency info from  $PDEPEND"  
2084  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2085  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2086  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2087      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2088      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2089  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2090  if test ! "x${RETVAL}" = x0 ; then  fi
2091      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2092      exit 1          echo "Warning:  No package groups information was specified."
2093            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2094    else
2095        if test ! -r ${PKG_GROUPS} ; then
2096            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2097            exit 1
2098        fi
2099        echo "  getting package groups info from      $PKG_GROUPS"
2100  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
2101    
2102  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2103  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2104  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2105  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2106      for i in "." $MODS ; do      for i in "." $MODS ; do
2107          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2108                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2109                  break                  break
2110          fi          fi
2111      done      done
2112  fi  fi
2113  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2114      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2115  fi      if test "x${PKG_GROUPS}" = x ; then
2116  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2117      echo "    default packages file disabled"          exit 1
2118        fi
2119  else  else
2120      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2121          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2122            exit 1
2123      else      else
2124          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2125          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2126          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2127          RETVAL=$?          RETVAL=$?
2128          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2129              echo -n "Error: can't parse default package list "              printf "Error: can't parse package list "
2130              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2131              exit 1              exit 1
2132          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         expand_pkg_groups  
         echo "    after group expansion packages are:  $PACKAGES"  
2133      fi      fi
2134  fi  fi
2135    for i in $pkg_list ; do
2136        PACKAGES="$PACKAGES $i"
2137    done
2138    echo     "    before group expansion packages are:$PACKAGES"
2139    if test "x${PKG_GROUPS}" != x ; then
2140        RET=1
2141        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2142        echo "    after group expansion packages are: $PACKAGES"
2143    fi
2144    
2145  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2146    echo "" > ./.tmp_pack
2147    for i in $PACKAGES ; do
2148        echo $i >> ./.tmp_pack
2149    done
2150    for i in `grep  "-" ./.tmp_pack` ; do
2151        j=`echo $i | sed 's/[-]//'`
2152        DISABLE="$DISABLE $j"
2153    done
2154  pack=  pack=
2155  for p in $PACKAGES ; do  for p in $PACKAGES ; do
2156      addit="t"      addit="t"
# Line 1194  PACKAGES="$pack" Line 2167  PACKAGES="$pack"
2167  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2168  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
2169  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2170    # Test if each explicitly referenced package exists
2171  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2172      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
2173          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""      if test ! -d "$ROOTDIR/pkg/$j" ; then
2174            echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2175          exit 1          exit 1
2176      fi      fi
2177      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2178  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
2179  PACKAGES=  PACKAGES=
2180  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
2181      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2182  done  done
2183  echo "    packages are:  $PACKAGES"  rm -f ./.tmp_pack
2184    echo "    packages are: $PACKAGES"
2185    
2186    #  Check for package MNC: if NetCDF is available, then build the MNC
2187    #  template files ; otherwise, delete mnc from the list of packages.
2188    echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2189    mnc_in=$?
2190    if test "x$HAVE_NETCDF" != xt ; then
2191        if test "x$mnc_in" = x0 ; then
2192            cat <<EOF
2193    *********************************************************************
2194    WARNING: the "mnc" package was enabled but tests failed to compile
2195      NetCDF applications.  Please check that:
2196    
2197      1) NetCDF is correctly installed for this compiler and
2198      2) the LIBS variable (within the "optfile") specifies the correct
2199           NetCDF library to link against.
2200    
2201      Due to this failure, the "mnc" package is now DISABLED.
2202    *********************************************************************
2203    EOF
2204            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2205            DISABLE="$DISABLE mnc"
2206        else
2207        #  this prevent to add mnc (due to pdepend rules) if not available
2208            DISABLE="$DISABLE mnc"
2209        fi
2210    else
2211        # we have NetCDF, we try to build MNC template files
2212        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2213        RETVAL=$?
2214        if test "x${RETVAL}" = x0 ; then
2215            rm -f make_mnc.errors
2216        else
2217            echo "Error: problem encountered while building source files in pkg/mnc:"
2218            cat make_mnc.errors 1>&2
2219            if test "x$mnc_in" = x0 ; then
2220                exit 1
2221            else
2222                DISABLE="$DISABLE mnc"
2223            fi
2224        fi
2225    fi
2226    
2227    #  Check for package PROFILES: if NetCDF is not available,
2228    #  then delete profiles from the list of available packages.
2229    if test "x$HAVE_NETCDF" != xt ; then
2230        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2231        RETVAL=$?
2232        if test "x$RETVAL" = x0 ; then
2233            cat <<EOF
2234    *********************************************************************
2235    WARNING: the "profiles" package was enabled but tests failed to
2236      compile NetCDF applications.  Please check that:
2237    
2238      1) NetCDF is correctly installed for this compiler and
2239      2) the LIBS variable (within the "optfile") specifies the correct
2240           NetCDF library to link against.
2241    
2242      Due to this failure, the "profiles" package is now DISABLED.
2243    *********************************************************************
2244    EOF
2245            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2246            DISABLE="$DISABLE profiles"
2247        else
2248        #  this prevent to add profiles (due to pdepend rules) if not available
2249            DISABLE="$DISABLE profiles"
2250        fi
2251    fi
2252    
2253    #  Check for package RADTRANS: if LAPACK is not available,
2254    #  then issue a warning that the direct radtrans solver is not available.
2255    if test "x$HAVE_LAPACK" != xt ; then
2256        echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1
2257        RETVAL=$?
2258        if test "x$RETVAL" = x0 ; then
2259            cat <<EOF
2260    *********************************************************************
2261    WARNING: the "radtrans" package was enabled but tests failed to
2262      compile LAPACK applications.  This means that the direct radtrans
2263      solver is not available and compilation will fail if it is enabled.
2264      If you want to use the direct solver, please check that:
2265    
2266  echo "  applying package dependency rules"    1) LAPACK is correctly installed for this compiler and
2267  ck=    2) the LIBS variable (within the "optfile") specifies the correct
2268  while test "x$ck" != xtt ; do       LAPACK library to link against.
2269    *********************************************************************
2270    EOF
2271        fi
2272    fi
2273    
2274    if  test "x${PKG_DEPEND}" != x ; then
2275      echo "  applying package dependency rules"
2276      ck=
2277      while test "x$ck" != xtt ; do
2278      i=0      i=0
2279      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2280      rtot=$nname      rtot=$nname
2281      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2282    
2283          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2284          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1227  while test "x$ck" != xtt ; do Line 2290  while test "x$ck" != xtt ; do
2290                  pin="t"                  pin="t"
2291              fi              fi
2292          done          done
2293            #  or in the current $STANDARDDIRS list?
2294            for p in $STANDARDDIRS ; do
2295                if test "x$p" = "x$pname" ; then pin="t" ; fi
2296            done
2297    
2298          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2299          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 1249  while test "x$ck" != xtt ; do Line 2316  while test "x$ck" != xtt ; do
2316    
2317          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2318          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2319                #echo "   " $pname ": need to add :" $dname
2320              in_dis="f"              in_dis="f"
2321              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2322                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1269  while test "x$ck" != xtt ; do Line 2337  while test "x$ck" != xtt ; do
2337          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2338          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2339              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2340              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2341              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2342              exit 1              exit 1
2343          fi          fi
2344          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2345            #i=$(( $i + 1 ))
2346      done      done
2347      ck=$ck"t"      ck=$ck"t"
2348  done    done
2349  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2350    fi
2351  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2352      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2353      if test -d $adr ; then      if test -d $adr ; then
# Line 1292  for i in $PACKAGES ; do Line 2362  for i in $PACKAGES ; do
2362      fi      fi
2363  done  done
2364    
 #  Build MNC templates and check for ability to build and use NetCDF  
 echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  
 RETVAL=$?  
 if test "x$RETVAL" = x0 ; then  
     ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         rm -f make_mnc.errors  
     else  
         echo "Error: problem encountered while building source files in pkg/mnc:"  
         cat make_mnc.errors 1>&2  
         exit 1  
     fi  
     if test "x$HAVE_NETCDF" != xt ; then  
         cat <<EOF  
   
 WARNING: the "mnc" package has been enabled but tests failed to  
   compile and/or execute NetCDF applications.  Please check that:  
   
   1) NetCDF is installed for your compiler and  
   2) the LIBS variable (within the 'optfile") specifies the correct  
        NetCDF library to link against.  
     
 EOF  
     fi  
 fi  
   
2365  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2366  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2367  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2368  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2369  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2370  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2371  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 1338  for n in $names ; do Line 2381  for n in $names ; do
2381              fi              fi
2382          done          done
2383          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2384              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2385              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2386          fi          fi
2387      fi      fi
2388  done  done
2389  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2390  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2391      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2392      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2393  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2394    
2395  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2396      case $i in      case $i in
2397          aim_v23)          aim_v23)
2398              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2399              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
2400              ;;              ;;
2401      esac      esac
# Line 1360  for i in $PACKAGES ; do Line 2403  for i in $PACKAGES ; do
2403    
2404  done  done
2405    
2406  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2407  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2408  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2409      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2410          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 1397  for i in $spaths ; do Line 2437  for i in $spaths ; do
2437      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2438          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2439          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2440          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2441          for n in $names ; do          for n in $names ; do
2442              test_for_package_in_cpp_options $CPP_OPTIONS $n              test_for_package_in_cpp_options $CPP_OPTIONS $n
2443          done          done
2444      fi      fi
2445      try="$i/CPP_EEOPTIONS.h"      try="$i/CPP_EEOPTIONS.h"
2446      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2447          echo "    found CPP_EEOPTIONS=\"$try\""          echo "    found CPP_EEOPTIONS=\"$try\""
2448          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2449  #**** not yet enabled ****  #**** not yet enabled ****
2450  #        test_for_mpi_in_cpp_eeoptions $try  #        test_for_mpi_in_cpp_eeoptions $try
2451  #**** not yet enabled ****  #**** not yet enabled ****
# Line 1419  fi Line 2459  fi
2459    
2460  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2461  #  compiler.  #  compiler.
2462  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2463      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2464  fi  fi
2465  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2466    touch adSrcFiles.tmp
2467  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2468      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2469      for j in $list_files ; do      for j in $list_files ; do
2470          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2471      done      done
2472  done  done
2473    if test ! "x"$FS = "x.f" ; then
2474        cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2475        mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2476    fi
2477    
2478  echo  echo
2479  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2480  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2481  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2482      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2483          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2484      fi      fi
2485  done  done
2486    
2487    if test ! "x$DIVA" = x ; then
2488        echo "  Creating the pseudo-MPI include directory"
2489        INCLUDES="-I./mpi_headers $INCLUDES"
2490        rm -rf ./mpi_headers
2491        mkdir -p ./mpi_headers
2492    
2493        if test "x$MPIINCLUDEDIR" = x ; then
2494            if test "x$MPIHOME" = x ; then
2495                MPIHOME='/usr'
2496            fi
2497            MPIINCLUDEDIR='$MPIHOME/include'
2498        fi
2499    
2500        if test -r $MPIINCLUDEDIR/mpif.h ; then
2501            for i in $MPI_HEADER_FILES; do
2502                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2503            done
2504    
2505            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2506        else
2507            echo " We cannot create a copy of mpif.h!"
2508    #       exit -1
2509        fi
2510    fi
2511    
2512  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2513  rm -rf .links.tmp  rm -rf .links.tmp
2514  mkdir .links.tmp  mkdir .links.tmp
2515    touch .links.tmp/foo
2516    if test ! -r ".links.tmp/foo" ; then
2517        echo
2518        echo "ERROR : something is wrong with your directory permissions or"
2519        echo "   your user file-creation mask (\"umask\") since creating a"
2520        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2521        echo "   not working.  Please try setting your umask to something"
2522        echo "   sane such as:"
2523        echo
2524        echo "      umask 0002"
2525        echo
2526        echo "   and please verify that you have the proper permissions for"
2527        echo "   creating sub-directories and then reading files created"
2528        echo "   within them."
2529        echo
2530        exit 1
2531    fi
2532    rm -f .links.tmp/foo
2533    
2534    if test "x$OPENAD" != x ; then
2535        OAD_DONT_COMPILE="/dev/null"
2536        OAD_DONT_TRANSFORM="/dev/null"
2537        OAD_KEEP_ORIGINAL="/dev/null"
2538        OAD_CB2M_FILES="/dev/null"
2539        OADTOOLS="$TOOLSDIR/OAD_support"
2540        test -f "oadtempflile"  &&  \rm -f "oadtempflile"
2541    cat >> "oadtempflile" <<EOF
2542    $OADTOOLS
2543    EOF
2544        echo "  looking for dontCompile file:  "
2545        for i in "." $MODS ; do
2546            if test -r $i"/dontCompile" ; then
2547                OAD_DONT_COMPILE=$i"/dontCompile"
2548                echo "     found $OAD_DONT_COMPILE"
2549                break
2550            fi
2551        done
2552        echo "  looking for dontTransform file:  "
2553        for i in "." $MODS ; do
2554            if test -r $i"/dontTransform" ; then
2555                OAD_DONT_TRANSFORM=$i"/dontTransform"
2556                echo "     found $OAD_DONT_TRANSFORM"
2557                break
2558            fi
2559        done
2560        echo "  looking for keepOriginal file:  "
2561        for i in "." $MODS ; do
2562            if test -r $i"/keepOriginal" ; then
2563                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2564                echo "     found $OAD_KEEP_ORIGINAL"
2565                break
2566            fi
2567        done
2568        echo "  looking for cb2mFiles:  "
2569        for i in "." $MODS ; do
2570            if test -r $i"/cb2mFiles" ; then
2571                OAD_CB2M_FILES=$i"/cb2mFiles"
2572                echo "     found $OAD_CB2M_FILES"
2573                break
2574            fi
2575        done
2576        echo "   OpenAD exceptions:  "
2577    fi
2578    
2579  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2580  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2581  echo -n 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2582  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2583  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2584  echo -n 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2585  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2586    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2587  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2588  for d in $alldirs ; do  for d in $alldirs ; do
2589      deplist=      deplist=
2590      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2591      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2592        if test "x$OPENAD" != x ; then
2593            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2594        fi
2595      for sf in $sfiles ; do      for sf in $sfiles ; do
2596          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2597              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2598                  case $d/$sf in                  ignore_f=f
2599                    ./$PACKAGES_DOT_H)                  case $d/$sf in
2600                      ./$PACKAGES_DOT_H)
2601                            ignore_f=t
2602                            ;;
2603                      ./AD_CONFIG.h)
2604                            ignore_f=t
2605                          ;;                          ;;
2606                    ./AD_CONFIG.h)                    ./FC_NAMEMANGLE.h)
2607                            ignore_f=t
2608                          ;;                          ;;
2609                    ./FC_NAMEMANGLE.h)                    ./BUILD_INFO.h)
2610                            ignore_f=t
2611                          ;;                          ;;
2612                    *)                    ./EMBEDDED_FILES.h)
2613                          touch .links.tmp/$sf                          ignore_f=t
                         deplist="$deplist $sf"  
2614                          ;;                          ;;
2615                  esac                    *)
2616                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                          #  For the local directory *ONLY*,
2617                  case $extn in                          #  ignore all soft-links
2618                      F)                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2619                          echo    " \\"  >> srclist.inc                              ignore_f=t
2620                          echo -n " $sf" >> srclist.inc                          else
2621                                touch .links.tmp/$sf
2622                                deplist="$deplist $sf"
2623                            fi
2624                            ;;
2625                    esac
2626                    if test "x$ignore_f" = xf ; then
2627                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2628                        case $extn in
2629                          F)
2630                            echo    " \\"  >> F77srclist.tmp
2631                            printf " $sf" >> F77srclist.tmp
2632                            if test "x$OPENAD" != x ; then
2633                                basename=${sf%%.F}
2634                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2635                                if test -z "$isAD" ; then
2636                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2637                                    if test -z "$toBeIgnored" ; then
2638                                        echo    " \\"  >> nonADF77srclist.tmp
2639                                        printf " $sf" >> nonADF77srclist.tmp
2640                                    else
2641                                        echo "    not to be compiled   :  $sf"
2642                                    fi
2643                                else # file is initially listed as an AD file we want to exclude it
2644                                     # or we want to retain the untransformed version
2645                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2646                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2647                                    if test -n "$notToBeTransformed"; then
2648                                        echo "    not to be transformed:  $sf"
2649                                    fi
2650                                    if test -n "$untransformedVersionToBeKept" ; then
2651                                        echo "    original to be kept  :  $sf"
2652                                    fi
2653                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2654                                        echo    " \\"  >> nonADF77srclist.tmp
2655                                        printf " $sf" >> nonADF77srclist.tmp
2656                                    fi
2657                                fi
2658                            fi
2659                          ;;                          ;;
2660                      F90)                      F90)
2661                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2662                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2663                          ;;                          ;;
2664                      c)                      c)
2665                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2666                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2667                          ;;                          ;;
2668                      h)                      h)
2669                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2670                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2671                          ;;                          ;;
2672                      flow)                      flow)
2673                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.tmp
2674                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.tmp
2675                          ;;                          ;;
2676                  esac                     esac
2677                    fi
2678              fi              fi
2679          fi          fi
2680      done      done
2681      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2682          if test "$d" != "." ; then
2683          echo "" >> srclinks.tmp          echo "" >> srclinks.tmp
2684          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2685          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2686          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2687    # This may happen when make thinks that a header file has to be "remade"
2688    # because a module it depends on has changed.  In this case we do nothing.
2689            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2690          fi
2691      fi      fi
2692  done  done
2693  rm -rf .links.tmp  rm -rf .links.tmp
2694  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2695  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2696  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2697  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2698  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2699    echo "" >> ad_flow_files.tmp
2700    
2701    CMDLINE=$0
2702    for xx in "$@" ; do nw=`echo $xx | wc -w`
2703        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2704                            else CMDLINE="$CMDLINE '$xx'" ; fi
2705    done
2706    
2707  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2708      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2709  fi  fi
2710  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2711  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 1521  echo "#    $MACHINE" >> $MAKEFILE Line 2713  echo "#    $MACHINE" >> $MAKEFILE
2713  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2714  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2715  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2716  echo "#    $0 $@" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2717  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2718  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2719    
2720  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2721  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
# Line 1532  EXE_SVD=$EXECUTABLE"_svd" Line 2724  EXE_SVD=$EXECUTABLE"_svd"
2724  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2725  #  #
2726  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2727  #  #
2728  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2729  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2730  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 1543  cat >>$MAKEFILE <<EOF Line 2735  cat >>$MAKEFILE <<EOF
2735  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2736  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2737  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2738  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2739  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2740  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 1552  cat >>$MAKEFILE <<EOF Line 2742  cat >>$MAKEFILE <<EOF
2742  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2743    
2744  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2745  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2746  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2747  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2748  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2749  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2750  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2751    OADTOOLS    = ${OADTOOLS}
2752    
2753  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2754  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 1569  ENABLED_PACKAGES = ${ENABLED_PACKAGES} Line 2760  ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2760  DISABLED_PACKAGES = ${DISABLED_PACKAGES}  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2761    
2762  # These files are created by Makefile  # These files are created by Makefile
2763  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2764  EOF  EOF
2765    
2766  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2767        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2768    else
2769        echo "EMBEDDED_FILES = " >>$MAKEFILE
2770    fi
2771    
2772    # extract default cpp search path so we can pass it to makedepend
2773    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2774    
2775  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2776  # Unix ln (link)  # Unix ln (link)
2777  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2778  # Dependency generator  # Dependency generator
2779  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2780  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 1588  KPP = ${KPP} Line 2783  KPP = ${KPP}
2783  FC = ${FC}  FC = ${FC}
2784  # Fortran compiler  # Fortran compiler
2785  F90C = ${F90C}  F90C = ${F90C}
2786    # C compiler
2787    CC = ${CC}
2788  # Link editor  # Link editor
2789  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2790    
2791  # Defines for CPP  # Defines for CPP
2792  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2793  # Includes for CPP  # Includes for CPP
2794  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2795    # default CPP includes for makedepend
2796    CPPINCLUDES = ${CPPINCLUDES}
2797  # Flags for KPP  # Flags for KPP
2798  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2799  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2800  # Optim./debug for FC  # Optim./debug for FC
2801  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2802  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2803  # Optim./debug for FC  # Optim./debug for FC
2804  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2805  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2806    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2807  # Flags for CC  # Flags for CC
2808  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2809  # Files that should not be optimized  # Files that should not be optimized
2810  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2811  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2812  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2813  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2814  # Name of the Mekfile  # Name of the makefile
2815  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2816    # Name of the make program
2817    MAKE = ${MAKE}
2818    
2819  EOF  EOF
2820    
2821  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2822  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2823  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2824  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2825  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2826  echo               >> $MAKEFILE  cat ad_flow_files.tmp   >> $MAKEFILE
2827  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  
2828  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
 echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2829    
2830  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  echo >> $MAKEFILE
2831  rm -f ad_flow_files.inc  
2832    # add definitions for preprocessed sources
2833    # and note that not all systems allow case sensitive extensions
2834    # hence the $FS and $FS90 here.
2835    # for fixed format f90 files we use ff90 or FF90 resp
2836    # but these are not expected to be the original source files
2837    
2838    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2839    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2840    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2841    echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2842    echo >> $MAKEFILE
2843    echo '.SUFFIXES:' >> $MAKEFILE
2844    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2845    
2846  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2847    
2848  .SUFFIXES:  all: fwd_exe_target
2849  .SUFFIXES: .o .f .p .F .c .F90 .f90  fwd_exe_target:
2850            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2851            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2852            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2853            @-rm -f ad_config.template
2854            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2855    
2856  all: \$(EXECUTABLE)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
 \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  
2857          @echo Creating \$@ ...          @echo Creating \$@ ...
2858          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2859    
2860  depend:  depend:
2861          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2862          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2863          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2864            -rm -f makedepend.out
2865    
2866    lib: libmitgcmuv.a
2867    
2868    libmitgcmuv.a: \$(OBJFILES)
2869            ar rcv libmitgcmuv.a \$(OBJFILES)
2870            ar d   libmitgcmuv.a main.o
2871    
2872    obj: \$(OBJFILES)
2873    
2874  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2875    
2876  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2877    
2878  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2879          @printf 'running ... '          @printf 'running ... '
2880          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2881    
2882    # remove most of the files that "make" generates
2883  clean:  clean:
2884          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2885            -rm -rf *.o
2886            -rm -rf *.$FS *.flowdir
2887            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2888    
2889    # remove most of the files that "make" and "make depend" generate
2890  Clean:  Clean:
2891          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2892          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2893          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2894          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2895            -rm -f genmake_warnings genmake_errors make.log
2896    
2897    # remove also the executable, files that "genmake2" generates (except Makefile)
2898    #         and output from a run (plus log files from testreport)
2899  CLEAN:  CLEAN:
2900          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2901            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2902            -rm -f $LOGFILE genmake_state genmake_*optfile
2903            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2904          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2905          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2906          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2907          -rm -f \$(EXECUTABLE) output.txt          -rm -f *.txt STD* *diagnostics.log datetime
2908            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2909            -rm -rf mnc_test_*
2910    
 #eh3 Makefile: makefile  
2911  makefile:  makefile:
2912          $THIS_SCRIPT $@          $THIS_SCRIPT $G2ARGS
2913  cleanlinks:  cleanlinks:
2914          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2915    
2916  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2917  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2918          @echo Creating \$@ ...          @echo Creating \$@ ...
2919          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2920  AD_CONFIG.h:  AD_CONFIG.h:
2921          @echo Creating \$@ ...          @echo Creating \$@ ...
2922          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
2923  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
2924          @echo Creating \$@ ...          @echo Creating \$@ ...
2925          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
2926    
2927  # The normal chain of rules is (  .F - .f - .o  )  BUILD_INFO.h:
2928  .F.f:          @echo Creating \$@ ...
2929          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@  EOF
2930  .f.o:  
2931    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2932    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2933    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2934    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2935    
2936    if test "x$EMBED_SRC" = xt ; then
2937        cat >>$MAKEFILE <<EOF
2938    
2939    decode_files.o : EMBEDDED_FILES.h
2940    
2941    ##  \$(F77_PP_SRC_FILES)
2942    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2943            @echo Creating \$@ ...
2944            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2945            -rm -f all_fF.tar.gz
2946            -gzip all_fF.tar
2947    
2948    EMBEDDED_FILES.h : all_fF.tar.gz
2949            @echo Creating \$@ ...
2950            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2951    
2952    EOF
2953    fi
2954    
2955    cat >>$MAKEFILE <<EOF
2956    
2957    # The normal chain of rules is (  .F - .$FS - .o  )
2958    
2959    ## This nullifies any default implicit rules concerning these two file types:
2960    ## %.o : %.F
2961    
2962    # C preprocessing and replacing the _d in constants:
2963    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
2964    
2965    .F.$FS:
2966            \$(CPPCMD)  > \$@
2967    .$FS.o:
2968          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2969  .F90.f90:  .F.o:
2970          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2971  .f90.o:  .F90.$FS90:
2972            \$(CPPCMD)  > \$@
2973    .FF90.f$FS90:
2974            \$(CPPCMD)  > \$@
2975    .$FS90.o:
2976          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2977    .f$FS90.o:
2978            cp \$< \$(basename  \$<).f90
2979            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2980  .c.o:  .c.o:
2981          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2982    .flow.flowdir:
2983            \$(CPPCMD) > \$@
2984    
2985  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2986  .F.p:  .F.p:
2987          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
2988  .p.f:  .p.$FS:
2989          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2990    
2991    EOF
2992    
2993  #=========================================  #=========================================
2994  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2995    #===  for TAMC/TAF  ======================
2996    
2997    if test "x$OPENAD" = x ; then
2998    
2999    cat >>$MAKEFILE <<EOF
3000    
3001  TAMC           = ${TAMC}  TAMC           = ${TAMC}
3002  TAF            = ${TAF}  TAF            = ${TAF}
# Line 1716  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 3011  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
3011  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
3012  for i in $ad_vars ; do  for i in $ad_vars ; do
3013      name=$i      name=$i
3014      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
3015      eval $t1      eval $t1
3016      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
3017      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
3018  done  done
3019    
3020  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
3021  echo >> $MAKEFILE  echo >> $MAKEFILE
3022  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
3023  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
3024  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3025      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
3026      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
3027  done  done
3028  echo >> $MAKEFILE  echo >> $MAKEFILE
3029  rm -f ad_files  rm -f adSrcFiles.tmp
3030    
3031  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3032    
3033  # ... AD ...  # ... AD ...
3034  adall: ad_taf  adall: ad_exe_target
3035  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
3036  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
3037    
3038    ad_exe_target:
3039            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3040            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3041            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3042            @-rm -f ad_config.template
3043            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3044    
3045  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3046          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3047          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3048          -rm -f ad_config.template          @-rm -f ad_config.template
3049          @make \$(F77FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3050          @make \$(AD_FLOW_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3051          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3052    
3053  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
3054          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3055          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
3056            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3057    
3058  adtafonly:  adtafonly:
3059          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3060          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
3061            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3062    
3063    \$(EXE_AD): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ad_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3064            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
3065    
3066    ad_tamc_output.$FS: ad_input_code.$FS
3067            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3068            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3069    
3070  ad_taf: ad_taf_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
3071          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3072    
3073  ad_tamc_output.f: ad_input_code.f  adonlyfwd:
3074          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
         cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f  
3075    
3076  ad_tamc: ad_tamc_output.o \$(OBJFILES)  adtrick:
3077          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3078    
3079    adobj: ad_taf_output.o \$(OBJFILES)
3080    
3081  # ... FTL ...  # ... FTL ...
3082  ftlall: ftl_taf  ftlall: ftl_exe_target
3083  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
3084  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
3085    
3086  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_exe_target:
3087          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3088          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3089          -rm -f ftl_config.template          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3090          @make \$(F77FILES)          @-rm -f ad_config.template
3091          @make \$(AD_FLOW_FILES)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
         cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f  
   
 ftl_taf_output.f: ftl_input_code.f  
         \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f  
         cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f  
3092    
3093  ftltafonly:  ftl_input_code.$FS: \$(AD_FILES)
3094          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3095          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3096            @-rm -f ad_config.template
3097  ftl_taf: ftl_taf_output.o \$(OBJFILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3098          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3099            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3100    
3101    ftl_taf_output.$FS: ftl_input_code.$FS
3102            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3103            ls -l ftl_input_code_ftl.$FS
3104            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3105    
3106  ftl_tamc_output.f: ftl_input_code.f  ftltafonly:
3107          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3108          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          ls -l ftl_input_code_ftl.$FS
3109            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3110    
3111    \$(EXE_FTL): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ftl_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3112            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
3113    
3114    ftl_tamc_output.$FS: ftl_input_code.$FS
3115            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3116            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3117    
3118  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3119          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
3120    
3121  # ... SVD ...  # ... SVD ...
3122  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
3123  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
3124            @echo "--->>> Do make svdall afterwards to compile. <<<---"
3125    svdall: svd_touch svd_taf
3126    
3127  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
3128          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
3129    
3130            @echo "--->>> Only COMPILE svd code! <<<---"
3131            @echo "--->>> Assumes you previously <<<---"
3132            @echo "--->>> did make svdtaf        <<<---"
3133    
3134    svd_touch:
3135            @echo "--->>> Only COMPILE svd code! <<<---"
3136            @echo "--->>> Assumes you previously <<<---"
3137            @echo "--->>> did make svdtaf        <<<---"
3138            touch ad_taf_output.$FS ftl_taf_output.$FS
3139            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3140            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3141            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3142            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3143            @-rm -f ad_config.template
3144    
3145  #=========================================  EOF
3146    
3147    fi
3148    
3149    #===  for OpenAD  ========================
3150    
3151    if test "x$OPENAD" != x ; then
3152    
3153    # ============ begin OpenAD specific section ==============
3154    
3155    cat >>$MAKEFILE <<EOF
3156    
3157    # all the source files linked from the various locations:
3158    ALL_LINKED_FILES= \
3159    \$(F77_SRC_FILES) \
3160    \$(C_SRC_FILES) \
3161    \$(H_SRC_FILES) \
3162    \$(F90_SRC_FILES) \
3163    \$(SPECIAL_FILES)
3164    
3165    ifndef OPENADROOT
3166      \$(error "Error:  environment variable OPENADROOT not defined!")
3167    endif
3168    
3169    ifndef XAIFSCHEMAROOT
3170      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
3171    endif
3172    
3173    ifndef XAIFBOOSTERROOT
3174      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
3175    endif
3176    
3177    EOF
3178    
3179    echo "  Add the source list for common block to module conversion "
3180    echo >> $MAKEFILE
3181    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3182    for i in `cat ${OAD_CB2M_FILES}` ; do
3183      echo    " \\" >> $MAKEFILE
3184      printf " $i" >> $MAKEFILE
3185    done
3186    echo >> $MAKEFILE
3187    
3188    echo "  Add the source list for AD code generation"
3189    echo >> $MAKEFILE
3190    printf "AD_FILES = " >> $MAKEFILE
3191    for i in `cat ${OAD_CB2M_FILES}` ; do
3192      echo    " \\" >> $MAKEFILE
3193      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3194    done
3195    AD_FILES=`cat adSrcFiles.tmp`
3196    for i in $AD_FILES ; do
3197      basename=${i%%.f}
3198      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3199      if test -z "$toBeIgnored" ; then
3200        echo    " \\" >> $MAKEFILE
3201        printf " $i" >> $MAKEFILE
3202      fi
3203    done
3204    echo >> $MAKEFILE
3205    rm -f adSrcFiles.tmp
3206    
3207    cat >>$MAKEFILE <<EOF
3208    
3209    adAll: \$(EXE_AD)
3210    .PHONY: adAll
3211    
3212    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3213    
3214    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3215    
3216    .PHONY: adDepend
3217    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3218            \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3219            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3220            -rm -f makedepend.out
3221    
3222    OPENAD_SUPPORT_F90_SRC_FILES = \
3223    w2f__types.F90 \
3224    OAD_active.F90 \
3225    OAD_cp.F90 \
3226    OAD_rev.F90 \
3227    OAD_tape.F90 \
3228    revolve.F90
3229    
3230    OPENAD_SUPPORT_C_SRC_FILES = \
3231    iaddr.c \
3232    timeRatio.c
3233    
3234    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3235            cat \$^ > \$@
3236    
3237    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3238            cat \$^ > \$@
3239    
3240    f95_test.out: f95_test_mods.f90 f95_test.f90
3241            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3242            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3243    
3244    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3245    
3246    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3247    
3248    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3249    
3250    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3251            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3252    
3253    # create sources files modules from header files containing common blocks
3254    %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3255            \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3256    
3257    # create new header files with USE statements for the new modules made above
3258    %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3259            \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3260    
3261    # change the include directives of everybody to refer to  the new header files with the USE statements
3262    %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3263            \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3264    
3265    # makefile debug rule
3266    small_f: \$(CB2M_F90_PP_SRC_FILES)
3267    .PHONY: small_f
3268    
3269    ad_output.txt: \$(EXE_AD)
3270            @printf 'linking data files ... '
3271            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3272            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3273            @printf 'running ... '
3274            @./\$(EXE_AD) > \$@
3275    
3276    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3277            cat \$^ > \$@
3278    
3279    # canonicalizer
3280    ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3281            \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3282    
3283    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3284    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3285            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3286    
3287    # F -> WHIRL
3288    ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3289            \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
3290    
3291    # WHIRL -> XAIF
3292    ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3293            \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3294    
3295    # XAIF -> XAIF'
3296    ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3297            \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3298    
3299    # XAIF' -> WHIRL'
3300    ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3301            \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3302    
3303    # WHIRL' -> F'
3304    ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3305            \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3306    
3307    # insert template directives
3308    ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3309            \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3310    
3311    PPEXTRAS=\$(wildcard \${OADTOOLS}/ad_template.*.F) \${OADTOOLS}/ad_inline.F
3312    # postprocess F'
3313    postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3314            \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i \${OADTOOLS}/ad_inline.f \$<
3315            # the target is a placeholder to trigger a single execution of the rule
3316            touch \$@
3317    # put this so make knows about the postprocessing output
3318    OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
3319    
3320    # link the XAIF schema files
3321    %.xsd:
3322            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3323    
3324    # link the support files:
3325    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3326            \$(LN) \${OADTOOLS}/\$@ .
3327    
3328    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag \$(PPEXTRAS:.F=.f)
3329    
3330    # ============ end OpenAD specific section ==============
3331    
3332  EOF  EOF
3333    
3334    fi
3335    
3336    #=========================================
3337    
3338  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3339      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3340  fi  fi
# Line 1822  for i in $KPPFILES ; do Line 3346  for i in $KPPFILES ; do
3346      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3347          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3348      fi      fi
3349      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3350  done  done
3351    
3352  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1832  for i in $NOOPTFILES ; do Line 3356  for i in $NOOPTFILES ; do
3356      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3357          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3358      fi      fi
3359      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3360      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3361  done  done
3362    
# Line 1846  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3370  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3370  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3371    
3372  # Create special header files  # Create special header files
3373  $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3374  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3375      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3376  else  else
# Line 1860  else Line 3384  else
3384      fi      fi
3385  fi  fi
3386  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3387      $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3388  fi  fi
3389    
   
3390  #  Write the "state" for future records  #  Write the "state" for future records
3391  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3392      echo -n "" > genmake_state      printf "" > genmake_state
3393      for i in $gm_state ; do      for i in $gm_state ; do
3394          t1="t2=\$$i"          t1="t2=\$$i"
3395          eval $t1          eval $t1
3396          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3397      done      done
3398  fi  fi

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