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revision 1.109 by heimbach, Fri Oct 22 11:46:02 2004 UTC revision 1.247 by jahn, Wed Dec 26 17:20:01 2012 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
173  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
175      cpp_options=$1      cpp_options=$1
176      pkg=$2      pkg=$2
177      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
178      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
179      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
180      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
181  }  }
182    
183  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
184  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
185  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
186      cpp_options=$1      cpp_options=$1
187      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
188      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99  
189  }  }
190    
191  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 34  test_for_mpi_in_cpp_eeoptions() { Line 193  test_for_mpi_in_cpp_eeoptions() {
193  test_for_string_in_file() {  test_for_string_in_file() {
194      file=$1      file=$1
195      strng=$2      strng=$2
196      grep -i "$strng" $file > /dev/null 2>&1      grep "$strng" $file > /dev/null 2>&1
197      RETVAL=$?      RETVAL=$?
198      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
199          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
200          grep -i "$strng" $file          grep -i "$strng" $file
201          return 1          exit 99
202      fi      fi
203      return 0      return 0
204  }  }
# Line 48  test_for_string_in_file() { Line 207  test_for_string_in_file() {
207  # the package list.  # the package list.
208  expand_pkg_groups() {  expand_pkg_groups() {
209      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
210      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
211          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
212          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
# Line 59  expand_pkg_groups() { Line 217  expand_pkg_groups() {
217              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
218                  matched=1                  matched=1
219                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
220                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
221                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
222              else              else
223                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
# Line 102  EOF Line 260  EOF
260              check_for_broken_Ff              check_for_broken_Ff
261          else          else
262              cat <<EOF 2>&1              cat <<EOF 2>&1
263  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
264    (fails the "cp" test) and this program cannot find a suitable    (fails the "cp" test) and this program cannot find a suitable
265    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
266    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
267    
268  EOF  EOF
# Line 122  EOF Line 280  EOF
280        stop        stop
281        end        end
282  EOF  EOF
283      test -f Makefile  &&  mv -f Makefile Makefile.bak      test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
284      cat <<EOF >> Makefile      cat <<EOF >> $MAKEFILE
285  .SUFFIXES:  .SUFFIXES:
286  .SUFFIXES: .$tfs .F  .SUFFIXES: .$tfs .F
287  .F.$tfs:  .F.$tfs:
288          $LN \$< \$@          $LN \$< \$@
289  EOF  EOF
290      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
291      RETVAL=$?      RETVAL=$?
292      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
293          if test "x$FS" = x ; then          if test "x$FS" = x ; then
# Line 137  EOF Line 295  EOF
295              FS90='fr9'              FS90='fr9'
296              check_for_broken_Ff              check_for_broken_Ff
297          else          else
298              cat <<EOF 2>&1              echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
299  ERROR: Your file system cannot distinguish between *.F and *.f files              echo "       see simple makefile: '$MAKEFILE' (left here)"
300    (fails the "make/ln" test) and this program cannot find a suitable              echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
301    replacement extension.  Please try a different build environment or              echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
302    contact the <MITgcm-support@mitgcm.org> list for help.              echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
303                echo ""
 EOF  
304              exit -1              exit -1
305              return              return
306          fi          fi
307      fi      fi
308      rm -f genmake_hello.* Makefile      rm -f genmake_hello.* $MAKEFILE
309      test -f Makefile  &&  mv -f Makefile.bak Makefile      test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
310    
311      #  If we make it here, use the extensions      #  If we make it here, use the extensions
312      FS=$tfs      FS=$tfs
# Line 157  EOF Line 314  EOF
314      return      return
315  }  }
316    
   
317  look_for_makedepend()  {  look_for_makedepend()  {
318    
319      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
# Line 178  look_for_makedepend()  { Line 334  look_for_makedepend()  {
334      #    3) locally build and use the cyrus implementation      #    3) locally build and use the cyrus implementation
335      #    4) fall back to the buggy local xmakedpend script      #    4) fall back to the buggy local xmakedpend script
336      #      #
337        echo >> $LOGFILE
338        echo "running: look_for_makedepend()" >> $LOGFILE
339        if test "x${MAKEDEPEND}" != x ; then
340            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
341            RETVAL=$?
342            if test x"$RETVAL" = x0 ; then
343                build_cyrus_makedepend
344                RETVAL=$?
345                if test "x$RETVAL" != x0 ; then
346                    echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'"
347                    MAKEDEPEND=
348                fi
349            else
350                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
351                RETVAL=$?
352                if test "x$RETVAL" = x0 ; then
353                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
354                fi
355                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
356            fi
357        fi
358      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
359          which makedepend > /dev/null 2>&1          which makedepend > /dev/null 2>&1
360          RV0=$?          RV0=$?
361            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
362            #  echo 'MAKEFILE="'$MAKEFILE'"'
363            cat <<EOF >> $MAKEFILE
364    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
365    #
366    #   Some "makedepend" implementations will die if they cannot
367    #   find a Makefile -- so this file is here to gives them an
368    #   empty one to find and parse.
369    EOF
370          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
371        program test        program test
372        write(*,*) 'test'        write(*,*) 'test'
373        stop        stop
374        end        end
375  EOF  EOF
376          makedepend genmake_tc.f > /dev/null 2>&1          makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
377          RV1=$?          RV1=$?
378            test -f $MAKEFILE  &&  rm -f $MAKEFILE
379            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
380          if test "x${RV0}${RV1}" = x00 ; then          if test "x${RV0}${RV1}" = x00 ; then
381              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
382                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
383          else          else
384              echo "    a system-default makedepend was not found."              echo "    system-default makedepend not found. Try to build cyrus-makedepend"
               
385              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
386              build_cyrus_makedepend              build_cyrus_makedepend
387              RETVAL=$?              RETVAL=$?
388              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" != x0 ; then
389                    echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend"
390                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
391                    echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392              fi              fi
             rm -f ./genmake_cy_md  
         fi  
     else  
         #  echo "MAKEDEPEND=${MAKEDEPEND}"  
         echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1  
         RETVAL=$?  
         if test x"$RETVAL" = x0 ; then  
             build_cyrus_makedepend  
393          fi          fi
394      fi      fi
395  }  }
396    
   
397  build_cyrus_makedepend()  {  build_cyrus_makedepend()  {
398        echo >> $LOGFILE
399        echo "running: build_cyrus_makedepend()" >> $LOGFILE
400      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
401      (      (
402          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
403              &&  ./configure > /dev/null 2>&1  \              &&  ./configure > /dev/null 2>&1  \
404              &&  make > /dev/null 2>&1              &&  $MAKE > /dev/null 2>&1
405          if test -x ./makedepend.exe ; then          if test -x ./makedepend.exe ; then
406              $LN ./makedepend.exe ./makedepend              $LN ./makedepend.exe ./makedepend
407          fi          fi
# Line 230  build_cyrus_makedepend()  { Line 413  build_cyrus_makedepend()  {
413      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
414      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
415          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
416            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
417          return 0          return 0
418      else      else
419          echo "WARNING: unable to build cyrus-imapd-makedepend"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
420          return 1          return 1
421      fi      fi
422  }  }
423    
424  # Guess possible config options for this host  build_embed_encode()
425  find_possible_configs()  {  {
426        printf "  building the embed-encode utility...  "
427      tmp1=`uname`"_"`uname -m`      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
428      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`          if test ! -d "$ROOTDIR/tools/embed_encode" ; then
429      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`              echo
430      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
431      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`              echo
432      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`              EMBED_SRC=f
433      PLATFORM=$tmp3              return 1
434      echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32          fi
435      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`          clist="cc gcc c89 $CC"
436      echo "  The platform appears to be:  $PLATFORM"          for ic in $clist ; do
437                    comm="$ic -o encode_files encode_files.c"
438      echo "test" > test              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
439      ln -s ./test link              RETVAL=$?
440      RETVAL=$?              if test "x$RETVAL" = x0 ; then
441      if test "x${RETVAL}" = x0 ; then                  echo "OK"
442          LN="ln -s"                  return 0
443      else              fi
444          echo "Error: \"ln -s\" does not appear to work on this system!"          done
445          echo "  For help, please contact <MITgcm-support@mitgcm.org>."          echo
446          exit 1          echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
447      fi          echo "      so it has been disabled"
448      rm -f test link          echo
449            EMBED_SRC=f
450      if test "x$CPP" = x ; then          return 1
         CPP="cpp -traditional -P"  
451      fi      fi
452        echo "OK"
453    }
454    
455      look_for_makedepend  #  look for possible C compilers
456    look_for_C_compilers() {
457      #================================================================      echo >> $LOGFILE
458      #  look for possible C compilers      echo "running: look_for_C_compilers()" >> $LOGFILE
459      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"      rm -f ./genmake_hello.c  ./genmake_hello
460      p_CC=      cat >> genmake_hello.c << EOF
     for c in $tmp ; do  
         rm -f ./genmake_hello.c  ./genmake_hello  
         cat >> genmake_hello.c << EOF  
461  #include <stdio.h>  #include <stdio.h>
462  int main(int argc, char **argv) {  int main(int argc, char **argv) {
463    printf("Hello!\n");    printf("Hello!\n");
464    return 0;    return 0;
465  }  }
466  EOF  EOF
467          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
468        p_CC=
469        for c in $tmp ; do
470            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
471            echo $COMM >> $LOGFILE
472            $COMM >> $LOGFILE 2>&1
473          RETVAL=$?          RETVAL=$?
474          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
475                echo " $c test successful" >> $LOGFILE
476              p_CC="$p_CC $c"              p_CC="$p_CC $c"
477          fi          fi
478      done      done
# Line 300  Error: No C compilers were found in your Line 488  Error: No C compilers were found in your
488  EOF  EOF
489          exit 1          exit 1
490      else      else
491          echo "  The possible C compilers found in your path are:"          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
         echo "   "$p_CC  
492          if test "x$CC" = x ; then          if test "x$CC" = x ; then
493              CC=`echo $p_CC | $AWK '{print $1}'`              CC=`echo $p_CC | $AWK '{print $1}'`
494              echo "  Setting C compiler to: "$CC              echo "  Setting C compiler to: "$CC
495          fi          fi
496      fi      fi
497        echo " --> set CC='$CC'" >> $LOGFILE
498    }
499    
500    # Guess possible config options for this host
501    find_possible_optfile()  {
502    
503        echo >> $LOGFILE
504        echo "running: find_possible_optfile()" >> $LOGFILE
505        tmp1=`uname`"_"`uname -m`
506        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
507        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
508        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
509        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
510        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
511        PLATFORM=$tmp3
512        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
513        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
514        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
515    
516      #================================================================      #================================================================
517      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
518      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      echo "  look for possible FORTRAN compilers" >> $LOGFILE
519        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
520      p_FC=      p_FC=
521      for c in $tmp ; do      rm -f ./genmake_hello.f
522          rm -f ./hello.f ./hello      cat >> genmake_hello.f <<EOF
         cat >> hello.f <<EOF  
523        program hello        program hello
524        do i=1,3        do i=1,3
525          print *, 'hello world : ', i          print *, 'hello world : ', i
526        enddo        enddo
527        end        end
528  EOF  EOF
529          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
530            COMM="$f -o genmake_hello genmake_hello.f"
531            echo $COMM >> $LOGFILE
532            $COMM >> $LOGFILE 2>&1
533          RETVAL=$?          RETVAL=$?
534          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
535              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
536                p_FC="$p_FC $f"
537          fi          fi
538      done      done
539      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
540      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
541          cat 1>&2 <<EOF          cat 1>&2 <<EOF
542    
# Line 340  Error: No Fortran compilers were found i Line 549  Error: No Fortran compilers were found i
549  EOF  EOF
550          exit 1          exit 1
551      else      else
552          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
553          echo "   "$p_FC      fi
554          if test "x$FC" = x ; then  
555              FC=`echo $p_FC | $AWK '{print $1}'`      #  Use the first of the compilers found in the current PATH
556              echo "  Setting FORTRAN compiler to: "$FC      #  that has a correctly-named optfile
557          fi      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
558            for i in $p_FC ; do
559                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
560                if test -r $OPTFILE ; then
561                    echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
562                    break
563                fi
564            done
565      fi      fi
566    
567      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
568          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
569          if test ! -r $OPTFILE ; then          if test ! -r $OPTFILE ; then
570               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
571          fi          fi
572      fi      fi
573  #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #   for i in $p_FC ; do  
 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
 #if test -r $p_OF ; then  
 #    OPTFILE=$p_OF  
 #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #    break  
 #fi  
 #   done  
574      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
575          cat 1>&2 <<EOF          cat 1>&2 <<EOF
576    
# Line 380  Error: No options file was found in:  $R Line 586  Error: No options file was found in:  $R
586  EOF  EOF
587          exit 1          exit 1
588      fi      fi
       
 #     # look for possible MPI libraries  
 #     mpi_libs=  
 #     mpi_fort=`which mpif77 2>/dev/null`  
 #     RETVAL=$?  
 #     if test "x${RETVAL}" = x0 ; then  
 #       cat >>test.f <<EOF  
 #       PROGRAM HELLO  
 #       DO 10, I=1,10  
 #       PRINT *,'Hello World'  
 #    10 CONTINUE  
 #       STOP  
 #       END  
 # EOF  
 #       eval "$mpi_fort -showme test.f > out"  
 #       RETVAL=$?  
 #       if test "x${RETVAL}" = x0 ; then  
 #           a=`cat out`  
 #           for i in $a ; do  
 #               case $i in  
 #                   -*)  
 #                       mpi_libs="$mpi_libs $i" ;;  
 #               esac  
 #           done  
 #           echo "The MPI libs appear to be:"  
 #           echo "  "$mpi_libs  
 #       fi  
 #       rm -f test.f out  
 #     fi  
   
589  }  }
590    
591  #  Parse the package dependency information  #  Parse the package dependency information
# Line 418  get_pdepend_list()  { Line 594  get_pdepend_list()  {
594      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
595      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
596      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
597          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
598          > ./.pd_tmp          > ./.pd_tmp
599        RETVAL=$?
600        if test ! "x${RETVAL}" = x0 ; then
601          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
602          exit 1
603        fi
604      . ./.pd_tmp      . ./.pd_tmp
605      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
     printf "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME  
       -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME  
           Use "NAME" as the adoptfile.  By default, the file at  
           "tools/adjoint_options/adjoint_default" will be used.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -cc NAME | --cc NAME | -cc=NAME | --cc=NAME  
           Use "NAME" as the C compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as gcc, c89, cc, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from \$PATH/include, link to libraries  
           from \$PATH/lib and use binaries from \$PATH/bin.  
   
     -bash NAME  
           Explicitly specify the Bourne or BASH shell to use  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/devel_HOWTO/  
   
 EOF  
   
     exit 1  
606  }  }
607    
608  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
# Line 549  get_fortran_c_namemangling()  { Line 610  get_fortran_c_namemangling()  {
610    
611      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
612      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
613          return 0          return 0
614      fi      fi
615        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
616    
617      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
618        
619      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
620  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
621  EOF  EOF
622      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
623        echo ' '$COMM >> $LOGFILE
624        $COMM >> $LOGFILE 2>&1
625      RETVAL=$?      RETVAL=$?
626      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
627          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
628          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
629    
630  WARNING: C test compile fails   WARNING: C test compile fails
631  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
632  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
633  EOF  EOF
634          return 1          return 1
635      fi      fi
# Line 573  EOF Line 637  EOF
637      RETVAL=$?      RETVAL=$?
638      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
639          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
640          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
641    
642  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
643  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
644  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
645  EOF  EOF
646          return 1          return 1
647      fi      fi
648      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
649        subroutine tcall( string )        subroutine tcall( string )
650        character*(*) string        character*(*) string
651        call tsub( string )        call tsub( string )
652        end        end
653  EOF  EOF
654      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
655        echo ' '$COMM >> $LOGFILE
656        $COMM >> $LOGFILE 2>&1
657      RETVAL=$?      RETVAL=$?
658      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
659          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
660          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
661    
662  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
663  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
664  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
665  EOF  EOF
666          return 1          return 1
667      fi      fi
# Line 603  EOF Line 669  EOF
669      RETVAL=$?      RETVAL=$?
670      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
671          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
672          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
673    
674  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
675  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
676  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
677  EOF  EOF
678          return 1          return 1
679      fi      fi
# Line 633  EOF Line 699  EOF
699    
700      #  cleanup the testing files      #  cleanup the testing files
701      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
702    
703        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
704    }
705    
706  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
707        echo >> $LOGFILE
708        echo "running: check_HAVE_CLOC()" >> $LOGFILE
709      get_fortran_c_namemangling      get_fortran_c_namemangling
710      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
711  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 653  void FC_NAMEMANGLE(cloc) ( double *curti Line 722  void FC_NAMEMANGLE(cloc) ( double *curti
722   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
723  }  }
724  EOF  EOF
725      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
726        echo $COMM >> $LOGFILE
727        $COMM >> $LOGFILE 2>&1
728      RET_C=$?      RET_C=$?
729      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
730        program hello        program hello
731        Real*8 wtime        REAL*8 wtime
732        external cloc        external cloc
733        call cloc(wtime)        call cloc(wtime)
734        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
735        end program hello        end
736  EOF  EOF
737      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
738        echo $COMM >> $LOGFILE
739        $COMM >> $LOGFILE 2>&1
740      RET_F=$?      RET_F=$?
741      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
742      RETVAL=$?      RETVAL=$?
743      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
744          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
745      fi      fi
746      rm -f genmake_tc*      rm -f genmake_tc*
747        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
748  }  }
749    
750    check_HAVE_SIGREG()  {
751        if test ! "x$HAVE_SIGREG" = x ; then
752            return
753        fi
754        echo >> $LOGFILE
755        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
756        get_fortran_c_namemangling
757        cat <<EOF > genmake_tc_1.c
758    $FC_NAMEMANGLE
759    #include <stdlib.h>
760    #include <stdio.h>
761    #include <signal.h>
762    #include <errno.h>
763    #include <ucontext.h>
764    
765    int * ip;
766    
767    static void killhandler(
768        unsigned int sn, siginfo_t  si, struct ucontext *sc )
769    {
770        *ip = *ip + 1;
771        return;
772    }
773    
774    void FC_NAMEMANGLE(sigreg) (int * aip)
775    {
776        struct sigaction s;
777        ip = aip;
778        s.sa_flags = SA_SIGINFO;
779        s.sa_sigaction = (void *)killhandler;
780        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
781            printf("Sigaction returned error = %d\n", errno);
782            exit(0);
783        }
784        return;
785    }
786    EOF
787        COMM="$CC $CFLAGS -c genmake_tc_1.c"
788        echo $COMM >> $LOGFILE
789        $COMM >> $LOGFILE 2>&1
790        RET_C=$?
791        cat <<EOF > genmake_tc_2.$FS
792          program hello
793          integer anint
794          common /iv/ anint
795          external sigreg
796          call sigreg(anint)
797          end
798    EOF
799        cat genmake_tc_2.$FS >> $LOGFILE
800        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
801        echo $COMM >> $LOGFILE
802        $COMM >> $LOGFILE 2>&1
803        RETVAL=$?
804        if test "x$RETVAL" = x0 ; then
805            HAVE_SIGREG=t
806        fi
807        rm -f genmake_tc*
808        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
809    }
810    
811    check_HAVE_SETRLSTK()  {
812        if test ! "x$HAVE_SETRLSTK" = x ; then
813            return
814        fi
815        echo >> $LOGFILE
816        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
817        get_fortran_c_namemangling
818        cat <<EOF > genmake_tc_1.c
819    $FC_NAMEMANGLE
820    #include <sys/time.h>
821    #include <sys/resource.h>
822    #include <unistd.h>
823    void FC_NAMEMANGLE(setrlstk) ()
824    {
825        struct rlimit rls;
826        rls.rlim_cur = RLIM_INFINITY;
827        rls.rlim_max = RLIM_INFINITY;
828        setrlimit(RLIMIT_STACK, &rls);
829        return;
830    }
831    EOF
832        COMM="$CC $CFLAGS -c genmake_tc_1.c"
833        echo $COMM >> $LOGFILE
834        $COMM >> $LOGFILE 2>&1
835        RET_C=$?
836        cat <<EOF > genmake_tc_2.$FS
837          program hello
838          external setrlstk
839          call setrlstk()
840          end
841    EOF
842        cat genmake_tc_2.$FS >> $LOGFILE
843        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
844        echo $COMM >> $LOGFILE
845        $COMM >> $LOGFILE 2>&1
846        RETVAL=$?
847        if test "x$RETVAL" = x0 ; then
848            HAVE_SETRLSTK=t
849        fi
850        rm -f genmake_tc*
851        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
852    }
853    
854  check_HAVE_STAT()  {  check_HAVE_STAT()  {
855        echo >> $LOGFILE
856        echo "running: check_HAVE_STAT()" >> $LOGFILE
857      get_fortran_c_namemangling      get_fortran_c_namemangling
858      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
859  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 696  void FC_NAMEMANGLE(tfsize) ( int *nbyte Line 874  void FC_NAMEMANGLE(tfsize) ( int *nbyte
874          *nbyte = -1;          *nbyte = -1;
875  }  }
876  EOF  EOF
877      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
878        echo $COMM >> $LOGFILE
879        $COMM >> genmake_tc.log 2>&1
880      RET_C=$?      RET_C=$?
881      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
882        program hello        program hello
883        integer nbyte        integer nbyte
884        call tfsize(nbyte)        call tfsize(nbyte)
885        print *," HELLO WORLD", nbyte        print *," HELLO WORLD", nbyte
886        end program hello        end
887  EOF  EOF
888      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      cat genmake_tc_2.$FS >> $LOGFILE
889      RET_F=$?      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
890      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      echo $COMM >> $LOGFILE
891        $COMM >> genmake_tc.log 2>&1
892      RETVAL=$?      RETVAL=$?
893      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
894          HAVE_STAT=t          HAVE_STAT=t
         DEFINES="$DEFINES -DHAVE_STAT"  
895      fi      fi
896      rm -f genmake_tc*      rm -f genmake_tc*
897        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
898  }  }
899    
   
900  check_netcdf_libs()  {  check_netcdf_libs()  {
901      echo "" > genmake_tnc.log      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
902      cat <<EOF > genmake_tnc.for          return
903        fi
904        echo >> $LOGFILE
905        echo "running: check_netcdf_libs()" >> $LOGFILE
906        cat <<EOF > genmake_tnc.F
907        program fgennc        program fgennc
908  #include "netcdf.inc"  #include "netcdf.inc"
909    EOF
910       #if test ! "x$MPI" = x ; then
911       #    echo '#include "mpif.h"' >> genmake_tnc.F
912       #fi
913        cat <<EOF >> genmake_tnc.F
914        integer iret, ncid, xid        integer iret, ncid, xid
915        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
916        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
# Line 731  check_netcdf_libs()  { Line 920  check_netcdf_libs()  {
920        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
921        end        end
922  EOF  EOF
923      #echo "$CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f"      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
924      #echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.f"      cat genmake_tnc.F >> genmake_tnc.log
925      #echo "$LINK -o genmake_tnc.o $LIBS"      echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
926      $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \      RET_CPP=f
927          &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.f >> genmake_tnc.log 2>&1  \      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
928          &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1      echo "$COMM" >> genmake_tnc.log
929        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
930        if test "x$RET_CPP" = xf ; then
931            echo "  WARNING: CPP failed to pre-process the netcdf test." \
932                >> genmake_tnc.log
933            echo "    Please check that \$INCLUDES is properly set." \
934                >> genmake_tnc.log
935        fi
936        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
937        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
938        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
939            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
940      RET_COMPILE=$?      RET_COMPILE=$?
941        cat genmake_tnc.log >> $LOGFILE
942    
943      #EH3  Remove test program execution for machines that either disallow      #EH3  Remove test program execution for machines that either disallow
944      #EH3  execution or cannot support it (eg. cross-compilers)      #EH3  execution or cannot support it (eg. cross-compilers)
# Line 748  EOF Line 949  EOF
949    
950      if test "x$RET_COMPILE" = x0 ; then      if test "x$RET_COMPILE" = x0 ; then
951          HAVE_NETCDF=t          HAVE_NETCDF=t
952            echo "check_netcdf: successful" >> $LOGFILE
953      else      else
954          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
955          $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \          echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
956              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.f >> genmake_tnc.log 2>&1  \          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
957              &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
958            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
959            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
960                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
961                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
962          RET_COMPILE=$?          RET_COMPILE=$?
963            echo >> $LOGFILE
964            cat genmake_tnc.log >> $LOGFILE
965          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
966              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
967              HAVE_NETCDF=t              HAVE_NETCDF=t
968                echo "check_netcdf: successful" >> $LOGFILE
969          else          else
970              cat genmake_tnc.log >> genmake_warnings          # try again with "-lnetcdff" added to the libs
971                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
972                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
973                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
974                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
975                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
976                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
977                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
978                RET_COMPILE=$?
979                echo >> $LOGFILE
980                cat genmake_tnc.log >> $LOGFILE
981                if test "x$RET_COMPILE" = x0 ; then
982                    LIBS="$LIBS -lnetcdff -lnetcdf"
983                    HAVE_NETCDF=t
984                    echo "check_netcdf: successful" >> $LOGFILE
985                fi
986          fi          fi
987      fi      fi
988      rm -f genmake_tnc*      rm -f genmake_tnc*
989        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
990  }  }
991    
992    check_lapack_libs()  {
993        if test ! "x$SKIP_LAPACK_CHECK" = x ; then
994            return
995        fi
996        echo >> $LOGFILE
997        echo "running: check_lapack_libs()" >> $LOGFILE
998        cat <<EOF > genmake_tla.F
999          program fgenla
1000          integer info
1001          integer ipiv( 2 )
1002          double precision ab( 4, 2 ), b( 2 )
1003          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1004          data b / 1., 1. /
1005          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1006          IF (info .NE. 0) write(*,*) 'Error:', info
1007          write(*,*) b
1008          end
1009    EOF
1010        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1011        cat genmake_tla.F >> genmake_tla.log
1012        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1013        RET_CPP=f
1014        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1015        echo "$COMM" >> genmake_tla.log
1016        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1017        if test "x$RET_CPP" = xf ; then
1018            echo "  WARNING: CPP failed to pre-process the lapack test." \
1019                >> genmake_tla.log
1020            echo "    Please check that \$INCLUDES is properly set." \
1021                >> genmake_tla.log
1022        fi
1023        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1024        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1025        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1026            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1027        RET_COMPILE=$?
1028        cat genmake_tla.log >> $LOGFILE
1029    
1030        # test program execution not always possible (see check_netcdf_libs)
1031        #
1032        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1033        #RETVAL=$?
1034        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1035    
1036        if test "x$RET_COMPILE" = x0 ; then
1037            HAVE_LAPACK=t
1038            echo "check_lapack: successful" >> $LOGFILE
1039        else
1040            # try again with "-llapack" added to the libs
1041            echo "==> try again with added '-llapack'" > genmake_tla.log
1042            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1043            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1044            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1045            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1046                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1047                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1048            RET_COMPILE=$?
1049            echo >> $LOGFILE
1050            cat genmake_tla.log >> $LOGFILE
1051            if test "x$RET_COMPILE" = x0 ; then
1052                LIBS="$LIBS -llapack"
1053                HAVE_LAPACK=t
1054                echo "check_lapack: successful" >> $LOGFILE
1055            else
1056            # try again with "-lf77blas -lcblas" added to the libs
1057                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1058                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1059                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1060                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1061                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1062                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1063                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1064                RET_COMPILE=$?
1065                echo >> $LOGFILE
1066                cat genmake_tla.log >> $LOGFILE
1067                if test "x$RET_COMPILE" = x0 ; then
1068                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1069                    HAVE_LAPACK=t
1070                    echo "check_lapack: successful" >> $LOGFILE
1071                else
1072                # try again with "-latlas" added to the libs
1073                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1074                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1075                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1076                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1077                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1078                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1079                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1080                    RET_COMPILE=$?
1081                    echo >> $LOGFILE
1082                    cat genmake_tla.log >> $LOGFILE
1083                    if test "x$RET_COMPILE" = x0 ; then
1084                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1085                        HAVE_LAPACK=t
1086                        echo "check_lapack: successful" >> $LOGFILE
1087                    fi
1088                fi
1089            fi
1090        fi
1091        rm -f genmake_tla*
1092        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1093    }
1094    
1095    check_HAVE_FLUSH()  {
1096        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1097            return
1098        fi
1099        echo >> $LOGFILE
1100        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1101        cat <<EOF > genmake_tflsh.$FS
1102          program fgenflsh
1103          integer iounit
1104          character*9 fname
1105          iounit = 26
1106          fname = 'tmp.tflsh'
1107          open(iounit,FILE=fname,STATUS='unknown')
1108          write(iounit,*) 'genmake_tflsh: hello'
1109          call flush(iounit)
1110          close(iounit)
1111          end
1112    EOF
1113        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1114        cat genmake_tflsh.$FS >> genmake_tflsh.log
1115        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1116    
1117        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1118        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1119        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1120            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1121        RET_COMPILE=$?
1122    
1123        if test "x$RET_COMPILE" = x0 ; then
1124            HAVE_FLUSH=t
1125            #cat genmake_tflsh.log >> $LOGFILE
1126            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1127        else
1128            HAVE_FLUSH=f
1129            cat genmake_tflsh.log >> $LOGFILE
1130        fi
1131        rm -f genmake_tflsh*
1132        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1133    }
1134    
1135  ###############################################################################  ###############################################################################
1136  #   Sequential part of script starts here  #   Sequential part of script starts here
# Line 777  PLATFORM= Line 1143  PLATFORM=
1143  LN=  LN=
1144  S64=  S64=
1145  KPP=  KPP=
1146  FC=  #FC=
1147  #CC=gcc  #CC=gcc
1148  CPP=  #CPP=
1149  LINK=  LINK=
1150  DEFINES=  DEFINES=
1151  PACKAGES=  PACKAGES=
1152  ENABLE=  ENABLE=
1153  DISABLE=  DISABLE=
1154  MAKEFILE=  # MAKEFILE=
1155  #MAKEDEPEND=  # MAKEDEPEND=
1156  PDEPEND=  PKG_DEPEND=
1157  DUMPSTATE=t  PKG_GROUPS=
1158  PDEFAULT=  DUMPSTATE=f
1159  OPTFILE=  OPTFILE=
1160  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1161  FFLAGS=  FFLAGS=
1162  FOPTIM=  FOPTIM=
1163    FEXTRAFLAGS=
1164    USE_EXTENDED_SRC=
1165    EXTENDED_SRC_FLAG=
1166    GET_FC_VERSION=
1167  CFLAGS=  CFLAGS=
1168  KFLAGS1=  KFLAGS1=
1169  KFLAGS2=  KFLAGS2=
# Line 804  NOOPTFILES= Line 1174  NOOPTFILES=
1174  NOOPTFLAGS=  NOOPTFLAGS=
1175  MPI=  MPI=
1176  MPIPATH=  MPIPATH=
1177    OMP=
1178    OMPFLAG=
1179    USE_R4=
1180    TS=
1181    PAPIS=
1182    PCLS=
1183    FOOLAD=
1184    PAPI=
1185    PCL=
1186    HPMT=
1187    GSL=
1188    DEVEL=
1189    HAVE_TEST_L=
1190    
1191    # comment this line out to enable lapack test
1192    SKIP_LAPACK_CHECK=t
1193    
1194  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1195  HAVE_SYSTEM=  HAVE_SYSTEM=
1196  HAVE_FDATE=  HAVE_FDATE=
1197  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1198  HAVE_CLOC=  HAVE_CLOC=
1199    # HAVE_SETRLSTK=
1200  HAVE_STAT=  HAVE_STAT=
1201  HAVE_NETCDF=  HAVE_NETCDF=
1202  HAVE_ETIME=  HAVE_ETIME=
1203    IGNORE_TIME=
1204    HAVE_LAPACK=
1205    HAVE_FLUSH=
1206    
1207  MODS=  MODS=
1208  TOOLSDIR=  TOOLSDIR=
# Line 820  SOURCEDIRS= Line 1210  SOURCEDIRS=
1210  INCLUDEDIRS=  INCLUDEDIRS=
1211  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1212    
1213    #- local config file
1214    gm_local="genmake_local"
1215    
1216  G2ARGS=  G2ARGS=
1217  BASH=  BASH=
1218  PWD=`pwd`  PWD=`pwd`
1219  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1220  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1221    EMBED_SRC=
1222  THISHOST=`hostname`  THISHOST=`hostname`
1223  THISCWD=`pwd`  THISCWD=`pwd`
1224  THISDATE=`date`  THISDATE=`date`
# Line 834  MACHINE=`uname -a` Line 1228  MACHINE=`uname -a`
1228  EXECUTABLE=  EXECUTABLE=
1229  EXEHOOK=  EXEHOOK=
1230  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1231  IEEE=  IEEE=
1232  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1233      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
# Line 855  FTL_TAF_FLAGS= Line 1248  FTL_TAF_FLAGS=
1248  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1249  TAMC_EXTRA=  TAMC_EXTRA=
1250    
   
1251  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1252  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1253  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1254    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1255    
1256  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1257  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1258  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1259  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1260  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1261  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1262    
1263  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1264  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1265  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1266  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA"
1267    
1268  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1269  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1270    
1271  cat <<EOF  cat <<EOF
1272    
1273  GENMAKE :  GENMAKE :
1274    
1275  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1276  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1277    or for more detail see the Developer's HOWTO manual at:
1278    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1279    
1280  EOF  EOF
1281    
1282    LOGFILE="genmake.log"
1283    #- clean-up previous genmake logfiles:
1284    rm -f genmake_state genmake_*optfile $LOGFILE
1285    
1286  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
 printf "  getting local config information:  "  
 if test -f $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1287    
1288  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1289  #parse_options  #parse_options
1290  ac_prev=  ac_prev=
1291  for ac_option in "$@" ; do  for ac_option in "$@" ; do
# Line 926  for ac_option in "$@" ; do Line 1298  for ac_option in "$@" ; do
1298          ac_prev=          ac_prev=
1299          continue          continue
1300      fi      fi
1301        
1302      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1303        
1304      case $ac_option in      case $ac_option in
1305            
1306          -help | --help | -h | --h)          -help | --help | -h | --h)
1307              usage ;;              usage ;;
1308            
1309          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1310              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1311          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1312              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1313          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1314              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1315            
1316          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1317              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1318          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1319              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1320            
1321          -pdepend | --pdepend)          -pdepend | --pdepend)
1322              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1323          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1324              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1325            
1326          -pdefault | --pdefault)          -pgroups | --pgroups)
1327              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1328          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1329              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1330            
1331          -make | --make | -m | --m)          -make | --make | -m | --m)
1332              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1333          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1334              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1335            
1336          -bash | --bash)          -bash | --bash)
1337              ac_prev=BASH ;;              ac_prev=BASH ;;
1338          -bash=* | --bash=*)          -bash=* | --bash=*)
1339              BASH=$ac_optarg ;;              BASH=$ac_optarg ;;
1340            
1341          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1342              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1343          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
1344              MAKEDEPEND=$ac_optarg ;;              MAKEDEPEND=$ac_optarg ;;
1345            
1346          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -mf | --mf)
1347              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1348          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1349              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1350            
1351          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1352              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1353              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1354              echo              echo
1355              usage              usage
1356              ;;              ;;
1357            
1358          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1359              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1360          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1361              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1362            
1363          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1364              ac_prev=MODS ;;              ac_prev=MODS ;;
1365          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1366              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1367            
1368          -disable | --disable)          -disable | --disable)
1369              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1370          -disable=* | --disable=*)          -disable=* | --disable=*)
1371              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1372            
1373          -enable | --enable)          -enable | --enable)
1374              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1375          -enable=* | --enable=*)          -enable=* | --enable=*)
1376              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1377            
1378          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1379              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1380          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 1012  for ac_option in "$@" ; do Line 1384  for ac_option in "$@" ; do
1384  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1385  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1386  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1387            
1388          -cc | --cc)          -cc | --cc)
1389              ac_prev=CC ;;              ac_prev=CC ;;
1390          -cc=* | --cc=*)          -cc=* | --cc=*)
1391              CC=$ac_optarg ;;              CC=$ac_optarg ;;
1392            
1393          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1394              ac_prev=FC ;;              ac_prev=FC ;;
1395          -fc=* | --fc=*)          -fc=* | --fc=*)
1396              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1397            
1398          -fs | --fs)          -fs | --fs)
1399              ac_prev=FS ;;              ac_prev=FS ;;
1400          -fs=* | --fs=*)          -fs=* | --fs=*)
1401              FS=$ac_optarg ;;              FS=$ac_optarg ;;
1402            
1403          -fs90 | --fs90)          -fs90 | --fs90)
1404              ac_prev=FS90 ;;              ac_prev=FS90 ;;
1405          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1406              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
1407            
1408            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1409                USE_R4=true ;;
1410    
1411          -ieee | --ieee)          -ieee | --ieee)
1412              IEEE=true ;;              IEEE=true ;;
1413          -noieee | --noieee)          -noieee | --noieee)
1414              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1415            -devel | --devel)
1416                IEEE=true ; DEVEL=true ;;
1417            -gsl | --gsl)
1418                GSL=true ;;
1419    
1420            -ts | --ts)
1421                TS=true ;;
1422            -papis | --papis)
1423                PAPIS=true ;;
1424            -pcls | --pcls)
1425                PCLS=true ;;
1426            -foolad | --foolad)
1427                FOOLAD=true ;;
1428            -papi | --papi)
1429                PAPI=true ;;
1430            -pcl | --pcl)
1431                PCL=true ;;
1432            -hpmt | --hpmt)
1433                HPMT=true ;;
1434    
1435          -mpi | --mpi)          -mpi | --mpi)
1436              MPI=true ;;              MPI=true ;;
1437          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1438              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1439              MPI=true ;;              MPI=true ;;
1440            
1441  #       -jam | --jam)          -omp | --omp)
1442  #           JAM=1 ;;              OMP=true ;;
1443  #       -nojam | --nojam)          -omp=* | --omp=*)
1444  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1445                        OMP=true ;;
1446    
1447          -ds | --ds)          -ds | --ds)
1448              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1449            
1450            -extra_flag | --extra_flag)
1451                ac_prev=FEXTRAFLAGS ;;
1452            -extra_flag=* | --extra_flag=*)
1453                FEXTRAFLAGS=$ac_optarg ;;
1454    
1455          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1456              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1457          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 1062  for ac_option in "$@" ; do Line 1462  for ac_option in "$@" ; do
1462          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1463              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1464    
1465            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1466                IGNORE_TIME="-DIGNORE_TIME" ;;
1467    
1468            -es | --es | -embed-source | --embed-source)
1469                EMBED_SRC=t ;;
1470    
1471          -*)          -*)
1472              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1473              usage              usage
1474              ;;              ;;
1475            
1476          *)          *)
1477              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1478              usage              usage
1479              ;;              ;;
1480            
1481      esac      esac
1482        
1483  done  done
1484    
1485    printf "  getting local config information:  "
1486    if test -f $gm_local ; then
1487        echo "using $gm_local"
1488        . $gm_local
1489    else
1490        echo "none found"
1491    fi
1492    
1493  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1494      echo      echo
1495      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1496      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1497      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1498      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1499        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1500        echo "WARNING: ignore \"./.genmakerc\" and continue."
1501      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1502  fi  fi
1503    
1504  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
1505  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1506      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1507      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1508          ROOTDIR=".."          ROOTDIR=".."
1509      else      else
1510          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1511              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1512                  ROOTDIR=$d                  ROOTDIR=$d
1513                  printf "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1514                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1515                  break                  break
1516              fi              fi
1517          done          done
# Line 1116  if test ! -d ${ROOTDIR} ; then Line 1529  if test ! -d ${ROOTDIR} ; then
1529  fi  fi
1530    
1531  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1532  if test -f "${ROOTDIR}/doc/tag-index" ; then  version_file="${ROOTDIR}/doc/tag-index"
1533      THISVER=`grep checkpoint ${ROOTDIR}/doc/tag-index | head -1`  if test -f $version_file ; then
1534        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1535    #-  remove ./BUILD_INFO.h file if older than version_file
1536        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1537            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1538            rm -f ./BUILD_INFO.h
1539        fi
1540  fi  fi
1541    
1542  echo "  getting OPTFILE information:  "  if test "x$MAKEFILE" = x ; then
1543        MAKEFILE="Makefile"
1544    fi
1545    
1546    echo "  getting OPTFILE information:"
1547  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1548      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1549          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1550          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1551          find_possible_configs          find_possible_optfile
1552      else      else
1553          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1554      fi      fi
# Line 1140  if test "x$OPTFILE" != xNONE ; then Line 1563  if test "x$OPTFILE" != xNONE ; then
1563              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1564              exit 1              exit 1
1565          fi          fi
1566          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1567              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1568          fi          fi
1569      else      else
# Line 1149  if test "x$OPTFILE" != xNONE ; then Line 1572  if test "x$OPTFILE" != xNONE ; then
1572      fi      fi
1573  fi  fi
1574    
1575  #  Check for broken systems that cannot correctly distinguish *.F and *.f files  echo "  getting AD_OPTFILE information:"
 # check_for_broken_Ff  
   
 echo "  getting AD_OPTFILE information:  "  
1576  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1577      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
1578          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
# Line 1170  if test "x${AD_OPTFILE}" != xNONE ; then Line 1590  if test "x${AD_OPTFILE}" != xNONE ; then
1590              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1591              exit 1              exit 1
1592          fi          fi
1593          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1594              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1595          fi          fi
1596      else      else
# Line 1179  if test "x${AD_OPTFILE}" != xNONE ; then Line 1599  if test "x${AD_OPTFILE}" != xNONE ; then
1599      fi      fi
1600  fi  fi
1601    
1602    #====================================================================
1603    #  Set default values if not set by the optfile
1604    #
1605  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1606  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1607  if test ! "x$BASH" = x ; then  if test ! "x$BASH" = x ; then
# Line 1195  Error: no Fortran compiler: please speci Line 1618  Error: no Fortran compiler: please speci
1618  EOF  EOF
1619      exit 1      exit 1
1620  fi  fi
1621    if test "x$GET_FC_VERSION" != x ; then
1622      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1623      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1624      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1625      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1626      if test -s genmake_fc_vers1 ; then
1627        cat genmake_fc_vers1 >> $LOGFILE
1628      else
1629        cat genmake_fc_vers2 >> $LOGFILE
1630      fi
1631      echo "<-- compiler version ----" >> $LOGFILE
1632      rm -f genmake_fc_vers1 genmake_fc_vers2
1633    fi
1634    
1635  if test "x$CC" = x ; then  if test "x$CC" = x ; then
1636      CC=cc      look_for_C_compilers
 #     cat <<EOF 1>&2  
 # Error: no C compiler: please specify using one of the following:  
 #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"  
 #   2) the "-cc=XXX" command-line option  
 #   3) the "./genmake_local" file  
 # EOF  
 #     exit 1  
1637  fi  fi
1638    
1639  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1640      LINK=$FC      LINK=$FC
1641  fi  fi
# Line 1212  if test "x$MAKE" = x ; then Line 1643  if test "x$MAKE" = x ; then
1643      MAKE="make"      MAKE="make"
1644  fi  fi
1645  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1646      CPP=cpp      CPP="cpp -traditional -P"
1647  fi  fi
1648  #EH3 === UGLY ===  #EH3 === UGLY ===
1649  #  The following is an ugly little hack to check for $CPP in /lib/ and  #  The following is an ugly little hack to check for $CPP in /lib/ and
# Line 1239  EOF Line 1670  EOF
1670  else  else
1671      rm -f test_cpp      rm -f test_cpp
1672  fi  fi
1673    
1674  look_for_makedepend  look_for_makedepend
1675    
1676    #  Check that soft-link command is set and usable
1677  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1678      LN="ln -s"      LN="ln -s"
1679  fi  fi
# Line 1249  RETVAL=$? Line 1683  RETVAL=$?
1683  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1684      cat <<EOF 1>&2      cat <<EOF 1>&2
1685    
1686  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1687    command in the optfile.    command in the optfile.
1688    
1689  EOF  EOF
1690      exit 1      exit 1
1691  fi  fi
1692    test -L genmake_tlink > /dev/null 2>&1
1693    RETVAL=$?
1694    if test "x$RETVAL" = x0 ; then
1695        HAVE_TEST_L=t
1696    fi
1697  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1698    
1699  #  Check for broken *.F/*.f handling and fix if possible  #  Check for broken *.F/*.f handling and fix if possible
# Line 1262  check_for_broken_Ff Line 1701  check_for_broken_Ff
1701    
1702  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1703        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1704        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI"
1705    fi
1706    if test ! "x$OMP" = x ; then
1707          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1708          FFLAGS="$FFLAGS $OMPFLAG"
1709          F90FLAGS="$F90FLAGS $OMPFLAG"
1710          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1711    fi
1712    
1713    if test ! "x$USE_R4" = x ; then
1714          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1715          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1716    fi
1717    
1718    if test ! "x$TS" = x ; then
1719          echo "  Turning on timing per timestep"
1720          if test ! "x$FOOLAD" = x ; then
1721                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1722          else
1723                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1724          fi
1725          PACKAGES="$PACKAGES showflops"
1726    fi
1727    if test ! "x$PAPIS" = x ; then
1728          echo "  Turning on PAPI flop summary per timestep"
1729          echo "  Please make sure PAPIINC, PAPILIB are defined"
1730          if test ! "x$FOOLAD" = x ; then
1731                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1732          else
1733                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1734          fi
1735          INCLUDES="$INCLUDES $PAPIINC"
1736          LIBS="$LIBS $PAPILIB"
1737          PACKAGES="$PACKAGES showflops"
1738    fi
1739    if test ! "x$PCLS" = x ; then
1740          echo "  Turning on PCL counter summary per timestep"
1741          echo "  Please make sure PCLINC, PCLLIB are defined"
1742          if test ! "x$FOOLAD" = x ; then
1743                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1744          else
1745                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1746          fi
1747          INCLUDES="$INCLUDES $PCLINC"
1748          LIBS="$LIBS $PCLLIB"
1749          PACKAGES="$PACKAGES showflops"
1750    fi
1751    if test ! "x$PAPI" = x ; then
1752          if test ! "x$PAPIS" = x ; then
1753              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1754              echo "  Sticking with PAPI flop summary per timestep!"
1755          else
1756              echo "  Turning on performance analysis with PAPI"
1757              echo "  Please make sure PAPIINC, PAPILIB are defined"
1758              DEFINES="$DEFINES -DUSE_PAPI"
1759              INCLUDES="$INCLUDES $PAPIINC"
1760              LIBS="$LIBS $PAPILIB"
1761          fi
1762    fi
1763    if test ! "x$PCL" = x ; then
1764          if test ! "x$PCLS" = x ; then
1765              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1766              echo "  Sticking with PCL flop summary per timestep!"
1767          else
1768              echo "  Turning on performance analysis with PCL"
1769              echo "  Please make sure PCLINC, PCLLIB are defined"
1770              DEFINES="$DEFINES -DUSE_PCL"
1771              INCLUDES="$INCLUDES $PCLINC"
1772              LIBS="$LIBS $PCLLIB"
1773          fi
1774    fi
1775    if test ! "x$HPMT" = x ; then
1776          if test ! "x$PAPI" = x ; then
1777              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1778              echo "  Sticking with PAPI!"
1779          else
1780            if test ! "x$PCL" = x ; then
1781              echo "  PCL and the HPM Toolkit cannot co-exist!"
1782              echo "  Sticking with PCL!"
1783            else
1784              echo "  Turning on performance analysis with the HPM Toolkit"
1785              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1786              DEFINES="$DEFINES -DUSE_LIBHPM"
1787              INCLUDES="$INCLUDES $HPMTINC"
1788              LIBS="$LIBS $HPMTLIB"
1789            fi
1790          fi
1791    fi
1792    if test ! "x$GSL" = x ; then
1793          echo "  Turning on use of GSL to control floating point calculations"
1794          echo "  Please make sure GSLINC, GSLLIB are defined"
1795          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1796          INCLUDES="$INCLUDES $GSLINC"
1797          LIBS="$LIBS $GSLLIB"
1798    fi
1799    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1800    if test ! "x$USE_EXTENDED_SRC" = x ; then
1801          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1802          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1803  fi  fi
1804    
1805  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1806  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1807  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1808        program hello        program hello
1809        call system('echo hi')        call system('echo hi')
1810        end        end
1811  EOF  EOF
1812  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1813  RETVAL=$?  RETVAL=$?
1814  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1815      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 1285  fi Line 1822  fi
1822  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1823    
1824  printf "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1825  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1826        program hello        program hello
1827        CHARACTER(128) string        CHARACTER*(128) string
1828        string = ' '        string = ' '
1829        call fdate( string )        call fdate( string )
1830        print *, string        print *, string
1831        end        end
1832  EOF  EOF
1833  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1834  RETVAL=$?  RETVAL=$?
1835  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1836      HAVE_FDATE=t      HAVE_FDATE=t
# Line 1306  fi Line 1843  fi
1843  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1844    
1845  printf "  Do we have the etime() command using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1846  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1847        program hello        program hello
1848        REAL*4 ACTUAL, TARRAY(2)        REAL*4 ACTUAL, TARRAY(2)
1849        EXTERNAL ETIME        EXTERNAL ETIME
# Line 1315  cat > genmake_tcomp.f <<EOF Line 1852  cat > genmake_tcomp.f <<EOF
1852        print *, tarray        print *, tarray
1853        end        end
1854  EOF  EOF
1855  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1856  RETVAL=$?  RETVAL=$?
1857  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1858      HAVE_ETIME=t      HAVE_ETIME=t
# Line 1330  rm -f genmake_tcomp* Line 1867  rm -f genmake_tcomp*
1867  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1868  check_HAVE_CLOC  check_HAVE_CLOC
1869  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1870        DEFINES="$DEFINES -DHAVE_CLOC"
1871        echo "yes"
1872    else
1873        echo "no"
1874        if test "x$EMBED_SRC" = xt ; then
1875            echo "    WARNING: you requested file embedding but it has"
1876            echo "      been disabled since C code cannot be called"
1877            EMBED_SRC=
1878        fi
1879    fi
1880    rm -f genmake_t*
1881    
1882    printf "  Can we unlimit the stack size using $FC...  "
1883    check_HAVE_SETRLSTK
1884    if test "x$HAVE_SETRLSTK" = xt ; then
1885        DEFINES="$DEFINES -DHAVE_SETRLSTK"
1886        echo "yes"
1887    else
1888        echo "no"
1889    fi
1890    rm -f genmake_t*
1891    
1892    printf "  Can we register a signal handler using $FC...  "
1893    check_HAVE_SIGREG
1894    if test "x$HAVE_SIGREG" = xt ; then
1895        DEFINES="$DEFINES -DHAVE_SIGREG"
1896      echo "yes"      echo "yes"
1897  else  else
1898      echo "no"      echo "no"
# Line 1339  rm -f genmake_t* Line 1902  rm -f genmake_t*
1902  printf "  Can we use stat() through C calls...  "  printf "  Can we use stat() through C calls...  "
1903  check_HAVE_STAT  check_HAVE_STAT
1904  if test "x$HAVE_STAT" != x ; then  if test "x$HAVE_STAT" != x ; then
1905        DEFINES="$DEFINES -DHAVE_STAT"
1906      echo "yes"      echo "yes"
1907  else  else
1908      echo "no"      echo "no"
# Line 1348  rm -f genmake_t* Line 1912  rm -f genmake_t*
1912  printf "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
1913  check_netcdf_libs  check_netcdf_libs
1914  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
1915        DEFINES="$DEFINES -DHAVE_NETCDF"
1916        echo "yes"
1917    else
1918        echo "no"
1919    fi
1920    
1921    printf "  Can we create LAPACK-enabled binaries...  "
1922    check_lapack_libs
1923    if test "x$HAVE_LAPACK" != x ; then
1924        DEFINES="$DEFINES -DHAVE_LAPACK"
1925        echo "yes"
1926    else
1927        echo "no"
1928    fi
1929    
1930    printf "  Can we call FLUSH intrinsic subroutine...  "
1931    check_HAVE_FLUSH
1932    if test "x$HAVE_FLUSH" = xt ; then
1933        DEFINES="$DEFINES -DHAVE_FLUSH"
1934      echo "yes"      echo "yes"
1935  else  else
1936      echo "no"      echo "no"
1937  fi  fi
1938    
1939    DEFINES="$DEFINES $IGNORE_TIME"
1940    if test "x$EMBED_SRC" = xt ; then
1941        build_embed_encode
1942    fi
1943    if test "x$EMBED_SRC" = xt ; then
1944        ENABLE="$ENABLE embed_files"
1945    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
1946    fi
1947    
1948  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1949  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1950  for d in $MODS ; do  for d in $MODS ; do
1951      if test ! -d $d ; then      if test ! -d $d ; then
1952          echo          echo
1953          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1954          exit 1          exit 1
1955      else      else
1956          printf " $d"          printf "$d "
1957          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1958          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1959      fi      fi
1960  done  done
1961  echo  echo
1962    
1963  if test "x$MAKEFILE" = x ; then  #if test "x${PLATFORM}" = x ; then
1964      MAKEFILE="Makefile"  #    PLATFORM=$p_PLATFORM
1965  fi  #fi
 if test "x${PLATFORM}" = x ; then  
     PLATFORM=$p_PLATFORM  
 fi  
1966    
1967  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1968      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1969      if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then      if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1970          EXEDIR=../exe          EXEDIR=../exe
1971      else      else
# Line 1414  ERROR: neither of the two default script Line 2002  ERROR: neither of the two default script
2002      ${TOOLSDIR}/set64bitConst.sh      ${TOOLSDIR}/set64bitConst.sh
2003      ${TOOLSDIR}/set64bitConst.csh      ${TOOLSDIR}/set64bitConst.csh
2004    
2005    are working so please check paths or specify (with \$S64) a    are working so please check paths or specify (with \$S64) a
2006    working version of this script.    working version of this script.
2007    
2008  EOF  EOF
# Line 1426  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD Line 2014  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD
2014    
2015  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2016    
2017    #  Set Standard Code Directories:
2018    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2019        STANDARDDIRS="eesupp model"
2020    fi
2021    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2022    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2023    ckM=$?
2024    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2025    ckE=$?
2026    if test $ckM = 0 -a $ckE = 1 ; then
2027        STANDARDDIRS="$STANDARDDIRS eesupp"
2028    fi
2029    
2030  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2031  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2032  #  they appear as regular source code  #  they appear as regular source code
2033  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2034      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2035      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2036        ) > make_eesupp.errors 2>&1
2037      RETVAL=$?      RETVAL=$?
2038      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2039          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 1442  if test -r $ROOTDIR"/eesupp/src/Makefile Line 2044  if test -r $ROOTDIR"/eesupp/src/Makefile
2044      fi      fi
2045  fi  fi
2046    
2047  #same for exch2  #same for pkg/exch2 and pkg/regrid
2048  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
2049      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2050      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
2051      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2052      if test "x${RETVAL}" = x0 ; then          ) > make_${pdir}.errors 2>&1
2053          rm -f make_exch2.errors          RETVAL=$?
2054      else          if test "x${RETVAL}" = x0 ; then
2055          echo "Error: problem encountered while building source files in exch2:"              rm -f make_${pdir}.errors
2056          cat make_exch2.errors 1>&2          else
2057          exit 1              echo "Error: problem encountered while building source files in pkg/${pdir}:"
2058                cat make_${pdir}.errors 1>&2
2059                exit 1
2060            fi
2061      fi      fi
2062  fi  done
2063    
2064  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2065  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2066      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2067      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2068          PDEPEND=$tmp  fi
2069      else  if  test "x${PKG_DEPEND}" = x ; then
2070          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2071          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2072  else  else
2073      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2074          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2075          exit 1          exit 1
2076      fi      fi
2077        echo "  getting package dependency info from  $PKG_DEPEND"
2078    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2079        get_pdepend_list $PKG_DEPEND
2080  fi  fi
2081  echo "  getting package dependency info from  $PDEPEND"  
2082  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2083  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2084  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2085      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2086      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2087  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2088  if test ! "x${RETVAL}" = x0 ; then  fi
2089      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2090      exit 1          echo "Warning:  No package groups information was specified."
2091            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2092    else
2093        if test ! -r ${PKG_GROUPS} ; then
2094            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2095            exit 1
2096        fi
2097        echo "  getting package groups info from      $PKG_GROUPS"
2098  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
2099    
2100  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2101  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2102  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2103  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2104      for i in "." $MODS ; do      for i in "." $MODS ; do
2105          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2106                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2107                  break                  break
2108          fi          fi
2109      done      done
2110  fi  fi
2111  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2112      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2113  fi      if test "x${PKG_GROUPS}" = x ; then
2114  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2115      echo "    default packages file disabled"          exit 1
2116        fi
2117  else  else
2118      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2119          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2120            exit 1
2121      else      else
2122          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2123          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2124          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2125          RETVAL=$?          RETVAL=$?
2126          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2127              printf "Error: can't parse default package list "              printf "Error: can't parse package list "
2128              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2129              exit 1              exit 1
2130          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         RET=1  
         while test $RET = 1 ; do expand_pkg_groups; RET=$?; done  
         echo "    after group expansion packages are:  $PACKAGES"  
2131      fi      fi
2132  fi  fi
2133    for i in $pkg_list ; do
2134        PACKAGES="$PACKAGES $i"
2135    done
2136    echo     "    before group expansion packages are:$PACKAGES"
2137    if test "x${PKG_GROUPS}" != x ; then
2138        RET=1
2139        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2140        echo "    after group expansion packages are: $PACKAGES"
2141    fi
2142    
2143  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2144    echo "" > ./.tmp_pack
2145  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2146      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2147  done  done
# Line 1553  PACKAGES="$PACKAGES $ENABLE" Line 2169  PACKAGES="$PACKAGES $ENABLE"
2169  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2170      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2171      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2172          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2173          exit 1          exit 1
2174      fi      fi
2175      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2176  done  done
# Line 1563  for i in `grep -v "-" ./.tmp_pack | sort Line 2179  for i in `grep -v "-" ./.tmp_pack | sort
2179      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2180  done  done
2181  rm -f ./.tmp_pack  rm -f ./.tmp_pack
2182  echo "    packages are:  $PACKAGES"  echo "    packages are: $PACKAGES"
2183    
2184  #  Check availability of NetCDF and then either build the MNC template  #  Check for package MNC: if NetCDF is available, then build the MNC
2185  #  files or delete mnc from the list of available packages.  #  template files ; otherwise, delete mnc from the list of packages.
2186  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2187  RETVAL=$?  mnc_in=$?
2188  if test "x$RETVAL" = x0 ; then  if test "x$HAVE_NETCDF" != xt ; then
2189      if test "x$HAVE_NETCDF" != xt ; then      if test "x$mnc_in" = x0 ; then
2190          cat <<EOF          cat <<EOF
   
2191  *********************************************************************  *********************************************************************
2192  WARNING: the "mnc" package was enabled but tests failed to compile  WARNING: the "mnc" package was enabled but tests failed to compile
2193    NetCDF applications.  Please check that:    NetCDF applications.  Please check that:
2194    
2195    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2196    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2197         NetCDF library to link against.         NetCDF library to link against.
2198    
2199    Due to this failure, the "mnc" package is now DISABLED.    Due to this failure, the "mnc" package is now DISABLED.
2200  *********************************************************************  *********************************************************************
   
2201  EOF  EOF
2202          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2203          DISABLE="$DISABLE mnc"          DISABLE="$DISABLE mnc"
2204      else      else
2205          ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1      #  this prevent to add mnc (due to pdepend rules) if not available
2206          RETVAL=$?          DISABLE="$DISABLE mnc"
2207          if test "x${RETVAL}" = x0 ; then      fi
2208              rm -f make_mnc.errors  else
2209          else      # we have NetCDF, we try to build MNC template files
2210              echo "Error: problem encountered while building source files in pkg/mnc:"      ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2211              cat make_mnc.errors 1>&2      RETVAL=$?
2212        if test "x${RETVAL}" = x0 ; then
2213            rm -f make_mnc.errors
2214        else
2215            echo "Error: problem encountered while building source files in pkg/mnc:"
2216            cat make_mnc.errors 1>&2
2217            if test "x$mnc_in" = x0 ; then
2218              exit 1              exit 1
2219            else
2220                DISABLE="$DISABLE mnc"
2221          fi          fi
2222      fi      fi
2223  fi  fi
2224    
2225  echo "  applying package dependency rules"  #  Check for package PROFILES: if NetCDF is not available,
2226  ck=  #  then delete profiles from the list of available packages.
2227  while test "x$ck" != xtt ; do  if test "x$HAVE_NETCDF" != xt ; then
2228        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2229        RETVAL=$?
2230        if test "x$RETVAL" = x0 ; then
2231            cat <<EOF
2232    *********************************************************************
2233    WARNING: the "profiles" package was enabled but tests failed to
2234      compile NetCDF applications.  Please check that:
2235    
2236      1) NetCDF is correctly installed for this compiler and
2237      2) the LIBS variable (within the "optfile") specifies the correct
2238           NetCDF library to link against.
2239    
2240      Due to this failure, the "profiles" package is now DISABLED.
2241    *********************************************************************
2242    EOF
2243            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2244            DISABLE="$DISABLE profiles"
2245        else
2246        #  this prevent to add profiles (due to pdepend rules) if not available
2247            DISABLE="$DISABLE profiles"
2248        fi
2249    fi
2250    
2251    #  Check for package RADTRANS: if LAPACK is not available,
2252    #  then issue a warning that the direct radtrans solver is not available.
2253    if test "x$HAVE_LAPACK" != xt ; then
2254        echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1
2255        RETVAL=$?
2256        if test "x$RETVAL" = x0 ; then
2257            cat <<EOF
2258    *********************************************************************
2259    WARNING: the "radtrans" package was enabled but tests failed to
2260      compile LAPACK applications.  This means that the direct radtrans
2261      solver is not available and compilation will fail if it is enabled.
2262      If you want to use the direct solver, please check that:
2263    
2264      1) LAPACK is correctly installed for this compiler and
2265      2) the LIBS variable (within the "optfile") specifies the correct
2266         LAPACK library to link against.
2267    *********************************************************************
2268    EOF
2269        fi
2270    fi
2271    
2272    if  test "x${PKG_DEPEND}" != x ; then
2273      echo "  applying package dependency rules"
2274      ck=
2275      while test "x$ck" != xtt ; do
2276      i=0      i=0
2277      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2278      rtot=$nname      rtot=$nname
2279      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2280    
2281          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2282          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1618  while test "x$ck" != xtt ; do Line 2288  while test "x$ck" != xtt ; do
2288                  pin="t"                  pin="t"
2289              fi              fi
2290          done          done
2291            #  or in the current $STANDARDDIRS list?
2292            for p in $STANDARDDIRS ; do
2293                if test "x$p" = "x$pname" ; then pin="t" ; fi
2294            done
2295    
2296          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2297          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 1640  while test "x$ck" != xtt ; do Line 2314  while test "x$ck" != xtt ; do
2314    
2315          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2316          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2317                #echo "   " $pname ": need to add :" $dname
2318              in_dis="f"              in_dis="f"
2319              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2320                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1660  while test "x$ck" != xtt ; do Line 2335  while test "x$ck" != xtt ; do
2335          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2336          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2337              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2338              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2339              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2340              exit 1              exit 1
2341          fi          fi
2342          i=`echo "$i + 1" | bc -l`          i=`echo "$i + 1" | bc -l`
2343          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2344      done      done
2345      ck=$ck"t"      ck=$ck"t"
2346  done    done
2347  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2348    fi
2349  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2350      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2351      if test -d $adr ; then      if test -d $adr ; then
# Line 1686  done Line 2362  done
2362    
2363  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2364  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2365  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2366  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2367  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2368  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2369  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 1703  for n in $names ; do Line 2379  for n in $names ; do
2379              fi              fi
2380          done          done
2381          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2382              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2383              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2384          fi          fi
2385      fi      fi
2386  done  done
2387  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2388  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2389      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2390      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2391  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2392    
2393  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2394      case $i in      case $i in
2395          aim_v23)          aim_v23)
2396              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2397              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
2398              ;;              ;;
2399      esac      esac
# Line 1725  for i in $PACKAGES ; do Line 2401  for i in $PACKAGES ; do
2401    
2402  done  done
2403    
2404  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2405  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2406  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2407      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2408          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 1762  for i in $spaths ; do Line 2435  for i in $spaths ; do
2435      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2436          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2437          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2438          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2439          for n in $names ; do          for n in $names ; do
2440              test_for_package_in_cpp_options $CPP_OPTIONS $n              test_for_package_in_cpp_options $CPP_OPTIONS $n
2441          done          done
2442      fi      fi
2443      try="$i/CPP_EEOPTIONS.h"      try="$i/CPP_EEOPTIONS.h"
2444      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2445          echo "    found CPP_EEOPTIONS=\"$try\""          echo "    found CPP_EEOPTIONS=\"$try\""
2446          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2447  #**** not yet enabled ****  #**** not yet enabled ****
2448  #        test_for_mpi_in_cpp_eeoptions $try  #        test_for_mpi_in_cpp_eeoptions $try
2449  #**** not yet enabled ****  #**** not yet enabled ****
# Line 1784  fi Line 2457  fi
2457    
2458  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2459  #  compiler.  #  compiler.
2460  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2461      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2462  fi  fi
2463  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2464    touch adSrcFiles.tmp
2465  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2466      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2467      for j in $list_files ; do      for j in $list_files ; do
2468          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2469      done      done
2470  done  done
2471    if test ! "x"$FS = "x.f" ; then
2472        cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2473        mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2474    fi
2475    
2476  echo  echo
2477  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
# Line 1805  for i in $INCLUDEDIRS ; do Line 2482  for i in $INCLUDEDIRS ; do
2482      fi      fi
2483  done  done
2484    
2485    if test ! "x$DIVA" = x ; then
2486        echo "  Creating the pseudo-MPI include directory"
2487        INCLUDES="-I./mpi_headers $INCLUDES"
2488        rm -rf ./mpi_headers
2489        mkdir -p ./mpi_headers
2490    
2491        if test "x$MPIINCLUDEDIR" = x ; then
2492            if test "x$MPIHOME" = x ; then
2493                MPIHOME='/usr'
2494            fi
2495            MPIINCLUDEDIR='$MPIHOME/include'
2496        fi
2497    
2498        if test -r $MPIINCLUDEDIR/mpif.h ; then
2499            for i in $MPI_HEADER_FILES; do
2500                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2501            done
2502    
2503            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2504        else
2505            echo " We cannot create a copy of mpif.h!"
2506    #       exit -1
2507        fi
2508    fi
2509    
2510  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2511  rm -rf .links.tmp  rm -rf .links.tmp
2512  mkdir .links.tmp  mkdir .links.tmp
2513    touch .links.tmp/foo
2514    if test ! -r ".links.tmp/foo" ; then
2515        echo
2516        echo "ERROR : something is wrong with your directory permissions or"
2517        echo "   your user file-creation mask (\"umask\") since creating a"
2518        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2519        echo "   not working.  Please try setting your umask to something"
2520        echo "   sane such as:"
2521        echo
2522        echo "      umask 0002"
2523        echo
2524        echo "   and please verify that you have the proper permissions for"
2525        echo "   creating sub-directories and then reading files created"
2526        echo "   within them."
2527        echo
2528        exit 1
2529    fi
2530    rm -f .links.tmp/foo
2531    
2532    if test "x$OPENAD" != x ; then
2533        OAD_DONT_COMPILE="/dev/null"
2534        OAD_DONT_TRANSFORM="/dev/null"
2535        OAD_KEEP_ORIGINAL="/dev/null"
2536        OAD_CB2M_FILES="/dev/null"
2537        OADTOOLS="$TOOLSDIR/OAD_support"
2538        test -f "oadtempflile"  &&  \rm -f "oadtempflile"
2539    cat >> "oadtempflile" <<EOF
2540    $OADTOOLS
2541    EOF
2542        echo "  looking for dontCompile file:  "
2543        for i in "." $MODS ; do
2544            if test -r $i"/dontCompile" ; then
2545                OAD_DONT_COMPILE=$i"/dontCompile"
2546                echo "     found $OAD_DONT_COMPILE"
2547                break
2548            fi
2549        done
2550        echo "  looking for dontTransform file:  "
2551        for i in "." $MODS ; do
2552            if test -r $i"/dontTransform" ; then
2553                OAD_DONT_TRANSFORM=$i"/dontTransform"
2554                echo "     found $OAD_DONT_TRANSFORM"
2555                break
2556            fi
2557        done
2558        echo "  looking for keepOriginal file:  "
2559        for i in "." $MODS ; do
2560            if test -r $i"/keepOriginal" ; then
2561                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2562                echo "     found $OAD_KEEP_ORIGINAL"
2563                break
2564            fi
2565        done
2566        echo "  looking for cb2mFiles:  "
2567        for i in "." $MODS ; do
2568            if test -r $i"/cb2mFiles" ; then
2569                OAD_CB2M_FILES=$i"/cb2mFiles"
2570                echo "     found $OAD_CB2M_FILES"
2571                break
2572            fi
2573        done
2574        echo "   OpenAD exceptions:  "
2575    fi
2576    
2577  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2578  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2579  printf 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2580  printf 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2581  printf 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2582  printf 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2583  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2584    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2585  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2586  for d in $alldirs ; do  for d in $alldirs ; do
2587      deplist=      deplist=
2588      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2589      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2590        if test "x$OPENAD" != x ; then
2591            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2592        fi
2593      for sf in $sfiles ; do      for sf in $sfiles ; do
2594          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2595              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2596                  case $d/$sf in                  ignore_f=f
2597                    ./$PACKAGES_DOT_H)                  case $d/$sf in
2598                      ./$PACKAGES_DOT_H)
2599                            ignore_f=t
2600                            ;;
2601                      ./AD_CONFIG.h)
2602                            ignore_f=t
2603                          ;;                          ;;
2604                    ./AD_CONFIG.h)                    ./FC_NAMEMANGLE.h)
2605                            ignore_f=t
2606                          ;;                          ;;
2607                    ./FC_NAMEMANGLE.h)                    ./BUILD_INFO.h)
2608                            ignore_f=t
2609                          ;;                          ;;
2610                    ./BUILD_INFO.h)                    ./EMBEDDED_FILES.h)
2611                            ignore_f=t
2612                          ;;                          ;;
2613                    *)                    *)
2614                          touch .links.tmp/$sf                          #  For the local directory *ONLY*,
2615                          deplist="$deplist $sf"                          #  ignore all soft-links
2616                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2617                                ignore_f=t
2618                            else
2619                                touch .links.tmp/$sf
2620                                deplist="$deplist $sf"
2621                            fi
2622                          ;;                          ;;
2623                  esac                  esac
2624                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  if test "x$ignore_f" = xf ; then
2625                  case $extn in                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2626                      F)                      case $extn in
2627                          echo    " \\"  >> srclist.inc                        F)
2628                          printf " $sf" >> srclist.inc                          echo    " \\"  >> F77srclist.tmp
2629                            printf " $sf" >> F77srclist.tmp
2630                            if test "x$OPENAD" != x ; then
2631                                basename=${sf%%.F}
2632                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2633                                if test -z "$isAD" ; then
2634                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2635                                    if test -z "$toBeIgnored" ; then
2636                                        echo    " \\"  >> nonADF77srclist.tmp
2637                                        printf " $sf" >> nonADF77srclist.tmp
2638                                    else
2639                                        echo "    not to be compiled   :  $sf"
2640                                    fi
2641                                else # file is initially listed as an AD file we want to exclude it
2642                                     # or we want to retain the untransformed version
2643                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2644                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2645                                    if test -n "$notToBeTransformed"; then
2646                                        echo "    not to be transformed:  $sf"
2647                                    fi
2648                                    if test -n "$untransformedVersionToBeKept" ; then
2649                                        echo "    original to be kept  :  $sf"
2650                                    fi
2651                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2652                                        echo    " \\"  >> nonADF77srclist.tmp
2653                                        printf " $sf" >> nonADF77srclist.tmp
2654                                    fi
2655                                fi
2656                            fi
2657                          ;;                          ;;
2658                      F90)                      F90)
2659                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2660                          printf " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2661                          ;;                          ;;
2662                      c)                      c)
2663                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2664                          printf " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2665                          ;;                          ;;
2666                      h)                      h)
2667                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2668                          printf " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2669                          ;;                          ;;
2670                      flow)                      flow)
2671                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.tmp
2672                          printf " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.tmp
2673                          ;;                          ;;
2674                  esac                     esac
2675                    fi
2676              fi              fi
2677          fi          fi
2678      done      done
2679      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2680          if test "$d" != "." ; then
2681          echo "" >> srclinks.tmp          echo "" >> srclinks.tmp
2682          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2683          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2684          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2685    # This may happen when make thinks that a header file has to be "remade"
2686    # because a module it depends on has changed.  In this case we do nothing.
2687            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2688          fi
2689      fi      fi
2690  done  done
2691  rm -rf .links.tmp  rm -rf .links.tmp
2692  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2693  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2694  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2695  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2696  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2697    echo "" >> ad_flow_files.tmp
2698    
2699    CMDLINE=$0
2700    for xx in "$@" ; do nw=`echo $xx | wc -w`
2701        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2702                            else CMDLINE="$CMDLINE '$xx'" ; fi
2703    done
2704    
2705  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2706      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2707  fi  fi
2708  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2709  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 1886  echo "#    $MACHINE" >> $MAKEFILE Line 2711  echo "#    $MACHINE" >> $MAKEFILE
2711  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2712  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2713  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2714  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2715  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2716  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2717    
# Line 1897  EXE_SVD=$EXECUTABLE"_svd" Line 2722  EXE_SVD=$EXECUTABLE"_svd"
2722  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2723  #  #
2724  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2725  #  #
2726  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2727  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2728  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 1908  cat >>$MAKEFILE <<EOF Line 2733  cat >>$MAKEFILE <<EOF
2733  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2734  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2735  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2736  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2737  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2738  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 1917  cat >>$MAKEFILE <<EOF Line 2740  cat >>$MAKEFILE <<EOF
2740  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2741    
2742  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2743  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2744  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2745  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2746  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2747  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2748  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2749    OADTOOLS    = ${OADTOOLS}
2750    
2751  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2752  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 1935  DISABLED_PACKAGES = ${DISABLED_PACKAGES} Line 2759  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2759    
2760  # These files are created by Makefile  # These files are created by Makefile
2761  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2762  EOF  EOF
2763    
2764  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2765        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2766    else
2767        echo "EMBEDDED_FILES = " >>$MAKEFILE
2768    fi
2769    
2770    # extract default cpp search path so we can pass it to makedepend
2771    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2772    
2773  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2774  # Unix ln (link)  # Unix ln (link)
2775  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2776  # Dependency generator  # Dependency generator
2777  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2778  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 1962  LINK = ${LINK} ${LDADD} Line 2790  LINK = ${LINK} ${LDADD}
2790  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2791  # Includes for CPP  # Includes for CPP
2792  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2793    # default CPP includes for makedepend
2794    CPPINCLUDES = ${CPPINCLUDES}
2795  # Flags for KPP  # Flags for KPP
2796  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2797  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2798  # Optim./debug for FC  # Optim./debug for FC
2799  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2800  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2801  # Optim./debug for FC  # Optim./debug for FC
2802  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2803  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2804    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2805  # Flags for CC  # Flags for CC
2806  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2807  # Files that should not be optimized  # Files that should not be optimized
# Line 1978  NOOPTFILES = ${NOOPTFILES} Line 2809  NOOPTFILES = ${NOOPTFILES}
2809  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2810  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2811  LIBS = ${LIBS}  LIBS = ${LIBS}
2812  # Name of the Mekfile  # Name of the makefile
2813  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2814    # Name of the make program
2815    MAKE = ${MAKE}
2816    
2817  EOF  EOF
2818    
2819  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2820  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2821  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2822  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2823  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2824    cat ad_flow_files.tmp   >> $MAKEFILE
2825    
2826    rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2827    
2828  echo >> $MAKEFILE  echo >> $MAKEFILE
2829  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  
2830  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE  # add definitions for preprocessed sources
2831  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  # and note that not all systems allow case sensitive extensions
2832    # hence the $FS and $FS90 here.
2833    # for fixed format f90 files we use ff90 or FF90 resp
2834    # but these are not expected to be the original source files
2835    
2836    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2837    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2838    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2839    echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2840  echo >> $MAKEFILE  echo >> $MAKEFILE
2841  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2842  echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
 rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
 rm -f ad_flow_files.inc  
2843    
2844  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2845    
2846  all: \$(EXECUTABLE)  all: fwd_exe_target
2847  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  fwd_exe_target:
2848            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2849            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2850            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2851            @-rm -f ad_config.template
2852            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2853    
2854    \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2855          @echo Creating \$@ ...          @echo Creating \$@ ...
2856          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2857    
2858  depend:  depend:
2859          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2860          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2861          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2862          -rm -f makedepend.out          -rm -f makedepend.out
2863    
2864  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  lib: libmitgcmuv.a
2865    
2866  small_f: \$(F77FILES) \$(F90FILES)  libmitgcmuv.a: \$(OBJFILES)
2867            ar rcv libmitgcmuv.a \$(OBJFILES)
2868            ar d   libmitgcmuv.a main.o
2869    
2870    obj: \$(OBJFILES)
2871    
2872    links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2873    
2874    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2875    
2876  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2877          @printf 'running ... '          @printf 'running ... '
2878          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2879    
2880    # remove most of the files that "make" generates
2881  clean:  clean:
2882          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2883            -rm -rf *.o
2884            -rm -rf *.$FS *.flowdir
2885            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2886    
2887    # remove most of the files that "make" and "make depend" generate
2888  Clean:  Clean:
2889          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2890          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2891          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2892          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2893            -rm -f genmake_warnings genmake_errors make.log
2894    
2895    # remove also the executable, files that "genmake2" generates (except Makefile)
2896    #         and output from a run (plus log files from testreport)
2897  CLEAN:  CLEAN:
2898          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2899            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2900            -rm -f $LOGFILE genmake_state genmake_*optfile
2901            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2902          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2903          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2904          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2905          -rm -f \$(EXECUTABLE) output.txt STD*          -rm -f *.txt STD* *diagnostics.log datetime
2906            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2907            -rm -rf mnc_test_*
2908    
 #eh3 Makefile: makefile  
2909  makefile:  makefile:
2910          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
2911  cleanlinks:  cleanlinks:
2912          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2913    
2914  # Special targets (SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2915  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2916          @echo Creating \$@ ...          @echo Creating \$@ ...
2917          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2918  AD_CONFIG.h:  AD_CONFIG.h:
2919          @echo Creating \$@ ...          @echo Creating \$@ ...
2920          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
2921  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
2922          @echo Creating \$@ ...          @echo Creating \$@ ...
2923          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
# Line 2058  test ! "x$THISUSER" = x && echo "      -echo Line 2931  test ! "x$THISUSER" = x && echo "      -echo
2931  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2932  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2933    
2934    if test "x$EMBED_SRC" = xt ; then
2935        cat >>$MAKEFILE <<EOF
2936    
2937    decode_files.o : EMBEDDED_FILES.h
2938    
2939    ##  \$(F77_PP_SRC_FILES)
2940    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2941            @echo Creating \$@ ...
2942            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2943            -rm -f all_fF.tar.gz
2944            -gzip all_fF.tar
2945    
2946    EMBEDDED_FILES.h : all_fF.tar.gz
2947            @echo Creating \$@ ...
2948            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2949    
2950    EOF
2951    fi
2952    
2953  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2954    
2955  # The normal chain of rules is (  .F - .$FS - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )
# Line 2065  cat >>$MAKEFILE <<EOF Line 2957  cat >>$MAKEFILE <<EOF
2957  ## This nullifies any default implicit rules concerning these two file types:  ## This nullifies any default implicit rules concerning these two file types:
2958  ## %.o : %.F  ## %.o : %.F
2959    
2960    # C preprocessing and replacing the _d in constants:
2961    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
2962    
2963  .F.$FS:  .F.$FS:
2964          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
2965  .$FS.o:  .$FS.o:
2966          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2967    .F.o:
2968            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2969  .F90.$FS90:  .F90.$FS90:
2970          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
2971    .FF90.f$FS90:
2972            \$(CPPCMD)  > \$@
2973  .$FS90.o:  .$FS90.o:
2974          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2975    .f$FS90.o:
2976            cp \$< \$(basename  \$<).f90
2977            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2978  .c.o:  .c.o:
2979          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2980    .flow.flowdir:
2981            \$(CPPCMD) > \$@
2982    
2983  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2984  .F.p:  .F.p:
2985          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
2986  .p.$FS:  .p.$FS:
2987          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2988    
2989    EOF
2990    
2991  #=========================================  #=========================================
2992  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2993    #===  for TAMC/TAF  ======================
2994    
2995    if test "x$OPENAD" = x ; then
2996    
2997    cat >>$MAKEFILE <<EOF
2998    
2999  TAMC           = ${TAMC}  TAMC           = ${TAMC}
3000  TAF            = ${TAF}  TAF            = ${TAF}
# Line 2098  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 3009  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
3009  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
3010  for i in $ad_vars ; do  for i in $ad_vars ; do
3011      name=$i      name=$i
3012      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
3013      eval $t1      eval $t1
3014      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
3015      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
3016  done  done
3017    
3018  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
3019  echo >> $MAKEFILE  echo >> $MAKEFILE
3020  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
3021  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
3022  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3023      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
3024      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
3025  done  done
3026  echo >> $MAKEFILE  echo >> $MAKEFILE
3027  rm -f ad_files  rm -f adSrcFiles.tmp
3028    
3029  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3030    
3031  # ... AD ...  # ... AD ...
3032  adall: ad_taf  adall: ad_exe_target
3033  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
3034  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
3035    
3036    ad_exe_target:
3037            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3038            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3039            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3040            @-rm -f ad_config.template
3041            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3042    
3043  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3044          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3045          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3046          -rm -f ad_config.template          @-rm -f ad_config.template
3047          @make \$(F77FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3048          @make \$(AD_FLOW_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3049          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3050    
3051  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
3052          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3053          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
3054            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3055    
3056  adtafonly:  adtafonly:
3057          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3058          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
3059            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3060  ad_taf: ad_taf_output.o \$(OBJFILES)  
3061          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)  \$(EXE_AD): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ad_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3062            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
3063  ad_tamc_output.f: ad_input_code.f  
3064          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f  ad_tamc_output.$FS: ad_input_code.$FS
3065          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3066            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3067    
3068  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
3069          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3070    
3071  adonlyfwd:  adonlyfwd:
3072          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3073    
3074  adtrick:  adtrick:
3075          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3076    
3077  # ... FTL ...  adobj: ad_taf_output.o \$(OBJFILES)
 ftlall: ftl_taf  
 ftltaf: ftl_taf_output.f  
 ftltamc: ftl_tamc_output.f  
   
 ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  
         @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template  
         cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h  
         -rm -f ftl_config.template  
         @make \$(F77FILES)  
         @make \$(AD_FLOW_FILES)  
         cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f  
   
 ftl_taf_output.f: ftl_input_code.f  
         \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f  
         cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f  
3078    
3079  ftltafonly:  # ... FTL ...
3080          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f  ftlall: ftl_exe_target
3081          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
3082    ftltamc: ftl_tamc_output.$FS
3083    
3084    ftl_exe_target:
3085            @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3086            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3087            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3088            @-rm -f ad_config.template
3089            \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3090    
3091  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_input_code.$FS: \$(AD_FILES)
3092          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3093            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3094            @-rm -f ad_config.template
3095            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3096            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3097            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3098    
3099    ftl_taf_output.$FS: ftl_input_code.$FS
3100            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3101            ls -l ftl_input_code_ftl.$FS
3102            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3103    
3104  ftl_tamc_output.f: ftl_input_code.f  ftltafonly:
3105          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3106          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          ls -l ftl_input_code_ftl.$FS
3107            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3108    
3109    \$(EXE_FTL): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ftl_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3110            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
3111    
3112    ftl_tamc_output.$FS: ftl_input_code.$FS
3113            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3114            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3115    
3116  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3117          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
3118    
3119  # ... SVD ...  # ... SVD ...
3120  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
3121          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
3122          @echo "--->>> Do make svdall afterwards to compile. <<<---"          @echo "--->>> Do make svdall afterwards to compile. <<<---"
3123  svdall: svd_touch svd_taf  svdall: svd_touch svd_taf
# Line 2203  svd_touch: Line 3133  svd_touch:
3133          @echo "--->>> Only COMPILE svd code! <<<---"          @echo "--->>> Only COMPILE svd code! <<<---"
3134          @echo "--->>> Assumes you previously <<<---"          @echo "--->>> Assumes you previously <<<---"
3135          @echo "--->>> did make svdtaf        <<<---"          @echo "--->>> did make svdtaf        <<<---"
3136          touch ad_taf_output.f ftl_taf_output.f          touch ad_taf_output.$FS ftl_taf_output.$FS
3137          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.f          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3138          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.f          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3139          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3140          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3141          -rm -f ftl_config.template          @-rm -f ad_config.template
3142    
3143  #=========================================  EOF
3144    
3145    fi
3146    
3147    #===  for OpenAD  ========================
3148    
3149    if test "x$OPENAD" != x ; then
3150    
3151    # ============ begin OpenAD specific section ==============
3152    
3153    cat >>$MAKEFILE <<EOF
3154    
3155    # all the source files linked from the various locations:
3156    ALL_LINKED_FILES= \
3157    \$(F77_SRC_FILES) \
3158    \$(C_SRC_FILES) \
3159    \$(H_SRC_FILES) \
3160    \$(F90_SRC_FILES) \
3161    \$(SPECIAL_FILES)
3162    
3163    ifndef OPENADROOT
3164      \$(error "Error:  environment variable OPENADROOT not defined!")
3165    endif
3166    
3167    ifndef XAIFSCHEMAROOT
3168      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
3169    endif
3170    
3171    ifndef XAIFBOOSTERROOT
3172      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
3173    endif
3174    
3175    EOF
3176    
3177    echo "  Add the source list for common block to module conversion "
3178    echo >> $MAKEFILE
3179    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3180    for i in `cat ${OAD_CB2M_FILES}` ; do
3181      echo    " \\" >> $MAKEFILE
3182      printf " $i" >> $MAKEFILE
3183    done
3184    echo >> $MAKEFILE
3185    
3186    echo "  Add the source list for AD code generation"
3187    echo >> $MAKEFILE
3188    printf "AD_FILES = " >> $MAKEFILE
3189    for i in `cat ${OAD_CB2M_FILES}` ; do
3190      echo    " \\" >> $MAKEFILE
3191      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3192    done
3193    AD_FILES=`cat adSrcFiles.tmp`
3194    for i in $AD_FILES ; do
3195      basename=${i%%.f}
3196      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3197      if test -z "$toBeIgnored" ; then
3198        echo    " \\" >> $MAKEFILE
3199        printf " $i" >> $MAKEFILE
3200      fi
3201    done
3202    echo >> $MAKEFILE
3203    rm -f adSrcFiles.tmp
3204    
3205    cat >>$MAKEFILE <<EOF
3206    
3207    adAll: \$(EXE_AD)
3208    .PHONY: adAll
3209    
3210    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3211    
3212    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3213    
3214    .PHONY: adDepend
3215    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3216            \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3217            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3218            -rm -f makedepend.out
3219    
3220    OPENAD_SUPPORT_F90_SRC_FILES = \
3221    w2f__types.F90 \
3222    OAD_active.F90 \
3223    OAD_cp.F90 \
3224    OAD_rev.F90 \
3225    OAD_tape.F90
3226    
3227    OPENAD_SUPPORT_C_SRC_FILES = \
3228    iaddr.c \
3229    timeRatio.c
3230    
3231    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3232            cat \$^ > \$@
3233    
3234    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3235            cat \$^ > \$@
3236    
3237    f95_test.out: f95_test_mods.f90 f95_test.f90
3238            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3239            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3240    
3241    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3242    
3243    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3244    
3245    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3246    
3247    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3248            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3249    
3250    # create sources files modules from header files containing common blocks
3251    %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3252            \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3253    
3254    # create new header files with USE statements for the new modules made above
3255    %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3256            \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3257    
3258    # change the include directives of everybody to refer to  the new header files with the USE statements
3259    %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3260            \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3261    
3262    # makefile debug rule
3263    small_f: \$(CB2M_F90_PP_SRC_FILES)
3264    .PHONY: small_f
3265    
3266    ad_output.txt: \$(EXE_AD)
3267            @printf 'linking data files ... '
3268            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3269            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3270            @printf 'running ... '
3271            @./\$(EXE_AD) > \$@
3272    
3273    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3274            cat \$^ > \$@
3275    
3276    # canonicalizer
3277    ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3278            \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3279    
3280    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3281    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3282            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3283    
3284    # F -> WHIRL
3285    ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3286            \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
3287    
3288    # WHIRL -> XAIF
3289    ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3290            \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3291    
3292    # XAIF -> XAIF'
3293    ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3294            \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3295    
3296    # XAIF' -> WHIRL'
3297    ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3298            \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3299    
3300    # WHIRL' -> F'
3301    ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3302            \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3303    
3304    # insert template directives
3305    ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3306            \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3307    
3308    PPEXTRAS=\$(wildcard \${OADTOOLS}/ad_template.*.F) \${OADTOOLS}/ad_inline.F
3309    # postprocess F'
3310    postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3311            \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i \${OADTOOLS}/ad_inline.f \$<
3312            # the target is a placeholder to trigger a single execution of the rule
3313            touch \$@
3314    # put this so make knows about the postprocessing output
3315    OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
3316    
3317    # link the XAIF schema files
3318    %.xsd:
3319            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3320    
3321    # link the support files:
3322    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3323            \$(LN) \${OADTOOLS}/\$@ .
3324    
3325    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag \$(PPEXTRAS:.F=.f)
3326    
3327    # ============ end OpenAD specific section ==============
3328    
3329  EOF  EOF
3330    
3331    fi
3332    
3333    #=========================================
3334    
3335  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3336      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3337  fi  fi
# Line 2249  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3367  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3367  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3368    
3369  # Create special header files  # Create special header files
3370  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3371  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3372      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3373  else  else
# Line 2263  else Line 3381  else
3381      fi      fi
3382  fi  fi
3383  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3384      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3385  fi  fi
3386    
   
3387  #  Write the "state" for future records  #  Write the "state" for future records
3388  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3389      printf "" > genmake_state      printf "" > genmake_state
3390      for i in $gm_state ; do      for i in $gm_state ; do
3391          t1="t2=\$$i"          t1="t2=\$$i"
3392          eval $t1          eval $t1
3393          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3394      done      done
3395  fi  fi

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