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revision 1.209 by jmc, Mon Nov 1 00:20:28 2010 UTC revision 1.244 by jmc, Wed Oct 10 22:24:59 2012 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
173  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
175      cpp_options=$1      cpp_options=$1
176      pkg=$2      pkg=$2
177      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
178      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
179      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
180      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"  
181  }  }
182    
183  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
184  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
185  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
186      cpp_options=$1      cpp_options=$1
187      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
188      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"  
189  }  }
190    
191  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 42  test_for_mpi_in_cpp_eeoptions() { Line 193  test_for_mpi_in_cpp_eeoptions() {
193  test_for_string_in_file() {  test_for_string_in_file() {
194      file=$1      file=$1
195      strng=$2      strng=$2
196      grep -i "$strng" $file > /dev/null 2>&1      grep "$strng" $file > /dev/null 2>&1
197      RETVAL=$?      RETVAL=$?
198      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
199          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
200          grep -i "$strng" $file          grep -i "$strng" $file
201          exit 99          exit 99
202      fi      fi
203      return 0      return 0
# Line 136  EOF Line 287  EOF
287  .F.$tfs:  .F.$tfs:
288          $LN \$< \$@          $LN \$< \$@
289  EOF  EOF
290      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
291      RETVAL=$?      RETVAL=$?
292      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
293          if test "x$FS" = x ; then          if test "x$FS" = x ; then
# Line 144  EOF Line 295  EOF
295              FS90='fr9'              FS90='fr9'
296              check_for_broken_Ff              check_for_broken_Ff
297          else          else
298              cat <<EOF 2>&1              echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
299  ERROR: Your file system cannot distinguish between *.F and *.f files              echo "       see simple makefile: '$MAKEFILE' (left here)"
300    (fails the "make/ln" test) and this program cannot find a suitable              echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
301    replacement extension.  Please try a different build environment or              echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
302    contact the <MITgcm-support@mitgcm.org> list for help.              echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
303                echo ""
 EOF  
304              exit -1              exit -1
305              return              return
306          fi          fi
# Line 164  EOF Line 314  EOF
314      return      return
315  }  }
316    
   
317  look_for_makedepend()  {  look_for_makedepend()  {
318    
319      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
# Line 185  look_for_makedepend()  { Line 334  look_for_makedepend()  {
334      #    3) locally build and use the cyrus implementation      #    3) locally build and use the cyrus implementation
335      #    4) fall back to the buggy local xmakedpend script      #    4) fall back to the buggy local xmakedpend script
336      #      #
337        echo >> $LOGFILE
338        echo "running: look_for_makedepend()" >> $LOGFILE
339        if test "x${MAKEDEPEND}" != x ; then
340            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
341            RETVAL=$?
342            if test x"$RETVAL" = x0 ; then
343                build_cyrus_makedepend
344                RETVAL=$?
345                if test "x$RETVAL" != x0 ; then
346                    echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'"
347                    MAKEDEPEND=
348                fi
349            else
350                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
351                RETVAL=$?
352                if test "x$RETVAL" = x0 ; then
353                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
354                fi
355                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
356            fi
357        fi
358      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
359          which makedepend > /dev/null 2>&1          which makedepend > /dev/null 2>&1
360          RV0=$?          RV0=$?
# Line 203  EOF Line 373  EOF
373        stop        stop
374        end        end
375  EOF  EOF
376          makedepend genmake_tc.f > /dev/null 2>&1          makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
377          RV1=$?          RV1=$?
378          test -f $MAKEFILE  &&  rm -f $MAKEFILE          test -f $MAKEFILE  &&  rm -f $MAKEFILE
379          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
380          if test "x${RV0}${RV1}" = x00 ; then          if test "x${RV0}${RV1}" = x00 ; then
381              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
382                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
383          else          else
384              echo "    a system-default makedepend was not found."              echo "    system-default makedepend not found. Try to build cyrus-makedepend"
   
385              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
386              build_cyrus_makedepend              build_cyrus_makedepend
387              RETVAL=$?              RETVAL=$?
388              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" != x0 ; then
389                    echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend"
390                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
391                    echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392              fi              fi
             rm -f ./genmake_cy_md  
         fi  
     else  
         #  echo "MAKEDEPEND=${MAKEDEPEND}"  
         echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1  
         RETVAL=$?  
         if test x"$RETVAL" = x0 ; then  
             build_cyrus_makedepend  
393          fi          fi
394      fi      fi
395  }  }
396    
   
397  build_cyrus_makedepend()  {  build_cyrus_makedepend()  {
398        echo >> $LOGFILE
399        echo "running: build_cyrus_makedepend()" >> $LOGFILE
400      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
401      (      (
402          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
403              &&  ./configure > /dev/null 2>&1  \              &&  ./configure > /dev/null 2>&1  \
404              &&  make > /dev/null 2>&1              &&  $MAKE > /dev/null 2>&1
405          if test -x ./makedepend.exe ; then          if test -x ./makedepend.exe ; then
406              $LN ./makedepend.exe ./makedepend              $LN ./makedepend.exe ./makedepend
407          fi          fi
# Line 248  build_cyrus_makedepend()  { Line 413  build_cyrus_makedepend()  {
413      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
414      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
415          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
416            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
417          return 0          return 0
418      else      else
419          echo "WARNING: unable to build cyrus-imapd-makedepend"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
420          return 1          return 1
421      fi      fi
422  }  }
423    
   
424  build_embed_encode()  build_embed_encode()
425  {  {
426      printf "  building the embed-encode utility...  "      printf "  building the embed-encode utility...  "
427      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
428          if test ! -d "$ROOTDIR/tools/embed_encode" ; then          if test ! -d "$ROOTDIR/tools/embed_encode" ; then
429              echo              echo
430              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
431              echo              echo
432              EMBED_SRC=f              EMBED_SRC=f
433              return 1              return 1
434          fi          fi
435          clist="cc gcc c89 $CC"          clist="cc gcc c89 $CC"
436          for ic in $clist ; do          for ic in $clist ; do
437              comm="$ic -o encode_files encode_files.c"              comm="$ic -o encode_files encode_files.c"
# Line 274  build_embed_encode() Line 439  build_embed_encode()
439              RETVAL=$?              RETVAL=$?
440              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
441                  echo "OK"                  echo "OK"
                 DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
442                  return 0                  return 0
443              fi              fi
444          done          done
# Line 286  build_embed_encode() Line 450  build_embed_encode()
450          return 1          return 1
451      fi      fi
452      echo "OK"      echo "OK"
     DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
453  }  }
454    
455    #  look for possible C compilers
456  # Guess possible config options for this host  look_for_C_compilers() {
457  find_possible_configs()  {      echo >> $LOGFILE
458        echo "running: look_for_C_compilers()" >> $LOGFILE
459      tmp1=`uname`"_"`uname -m`      rm -f ./genmake_hello.c  ./genmake_hello
460      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat >> genmake_hello.c << EOF
     tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`  
     tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`  
     tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`  
     tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`  
     PLATFORM=$tmp3  
     echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32  
     OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`  
     echo "  The platform appears to be:  $PLATFORM"  
   
     echo "test" > test  
     ln -s ./test link  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         LN="ln -s"  
     else  
         echo "Error: \"ln -s\" does not appear to work on this system!"  
         echo "  For help, please contact <MITgcm-support@mitgcm.org>."  
         exit 1  
     fi  
     rm -f test link  
   
     if test "x$CPP" = x ; then  
         CPP="cpp -traditional -P"  
     fi  
   
     look_for_makedepend  
   
     #================================================================  
     #  look for possible C compilers  
     tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"  
     p_CC=  
     for c in $tmp ; do  
         rm -f ./genmake_hello.c  ./genmake_hello  
         cat >> genmake_hello.c << EOF  
461  #include <stdio.h>  #include <stdio.h>
462  int main(int argc, char **argv) {  int main(int argc, char **argv) {
463    printf("Hello!\n");    printf("Hello!\n");
464    return 0;    return 0;
465  }  }
466  EOF  EOF
467          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
468        p_CC=
469        for c in $tmp ; do
470            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
471            echo $COMM >> $LOGFILE
472            $COMM >> $LOGFILE 2>&1
473          RETVAL=$?          RETVAL=$?
474          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
475                echo " $c test successful" >> $LOGFILE
476              p_CC="$p_CC $c"              p_CC="$p_CC $c"
477          fi          fi
478      done      done
# Line 353  Error: No C compilers were found in your Line 488  Error: No C compilers were found in your
488  EOF  EOF
489          exit 1          exit 1
490      else      else
491          echo "  The possible C compilers found in your path are:"          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
         echo "   "$p_CC  
492          if test "x$CC" = x ; then          if test "x$CC" = x ; then
493              CC=`echo $p_CC | $AWK '{print $1}'`              CC=`echo $p_CC | $AWK '{print $1}'`
494              echo "  Setting C compiler to: "$CC              echo "  Setting C compiler to: "$CC
495          fi          fi
496      fi      fi
497        echo " --> set CC='$CC'" >> $LOGFILE
498    }
499    
500    # Guess possible config options for this host
501    find_possible_optfile()  {
502    
503        echo >> $LOGFILE
504        echo "running: find_possible_optfile()" >> $LOGFILE
505        tmp1=`uname`"_"`uname -m`
506        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
507        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
508        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
509        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
510        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
511        PLATFORM=$tmp3
512        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
513        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
514        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
515    
516      #================================================================      #================================================================
517      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
518      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"      echo "  look for possible FORTRAN compilers" >> $LOGFILE
519        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
520      p_FC=      p_FC=
521      for c in $tmp ; do      rm -f ./genmake_hello.f
522          rm -f ./hello.f ./hello      cat >> genmake_hello.f <<EOF
         cat >> hello.f <<EOF  
523        program hello        program hello
524        do i=1,3        do i=1,3
525          print *, 'hello world : ', i          print *, 'hello world : ', i
526        enddo        enddo
527        end        end
528  EOF  EOF
529          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
530            COMM="$f -o genmake_hello genmake_hello.f"
531            echo $COMM >> $LOGFILE
532            $COMM >> $LOGFILE 2>&1
533          RETVAL=$?          RETVAL=$?
534          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
535              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
536                p_FC="$p_FC $f"
537          fi          fi
538      done      done
539      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
540      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
541          cat 1>&2 <<EOF          cat 1>&2 <<EOF
542    
# Line 393  Error: No Fortran compilers were found i Line 549  Error: No Fortran compilers were found i
549  EOF  EOF
550          exit 1          exit 1
551      else      else
552          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
553      fi      fi
554    
555      #  Use the first of the compilers found in the current PATH      #  Use the first of the compilers found in the current PATH
# Line 403  EOF Line 558  EOF
558          for i in $p_FC ; do          for i in $p_FC ; do
559              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
560              if test -r $OPTFILE ; then              if test -r $OPTFILE ; then
561                  echo "  Setting OPTFILE to: "$OPTFILE                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
562                  break                  break
563              fi              fi
564          done          done
# Line 412  EOF Line 567  EOF
567      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
568          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
569          if test ! -r $OPTFILE ; then          if test ! -r $OPTFILE ; then
570               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
571          fi          fi
572      fi      fi
573  #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #   for i in $p_FC ; do  
 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
 #if test -r $p_OF ; then  
 #    OPTFILE=$p_OF  
 #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #    break  
 #fi  
 #   done  
574      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
575          cat 1>&2 <<EOF          cat 1>&2 <<EOF
576    
# Line 441  Error: No options file was found in:  $R Line 586  Error: No options file was found in:  $R
586  EOF  EOF
587          exit 1          exit 1
588      fi      fi
   
 #     # look for possible MPI libraries  
 #     mpi_libs=  
 #     mpi_fort=`which mpif77 2>/dev/null`  
 #     RETVAL=$?  
 #     if test "x${RETVAL}" = x0 ; then  
 #       cat >>test.f <<EOF  
 #       PROGRAM HELLO  
 #       DO 10, I=1,10  
 #       PRINT *,'Hello World'  
 #    10 CONTINUE  
 #       STOP  
 #       END  
 # EOF  
 #       eval "$mpi_fort -showme test.f > out"  
 #       RETVAL=$?  
 #       if test "x${RETVAL}" = x0 ; then  
 #           a=`cat out`  
 #           for i in $a ; do  
 #               case $i in  
 #                   -*)  
 #                       mpi_libs="$mpi_libs $i" ;;  
 #               esac  
 #           done  
 #           echo "The MPI libs appear to be:"  
 #           echo "  "$mpi_libs  
 #       fi  
 #       rm -f test.f out  
 #     fi  
   
589  }  }
590    
591  #  Parse the package dependency information  #  Parse the package dependency information
# Line 488  get_pdepend_list()  { Line 603  get_pdepend_list()  {
603      fi      fi
604      . ./.pd_tmp      . ./.pd_tmp
605      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME  
       -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME  
           Use "NAME" as the adoptfile.  By default, the file at  
           "tools/adjoint_options/adjoint_default" will be used.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pgroups NAME | --pgroups NAME  
       -pgroups=NAME | --pgroups=NAME  
           Get the package groups information from "NAME".  
   
     -bash NAME  
           Explicitly specify the Bourne or BASH shell to use  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -cc NAME | --cc NAME | -cc=NAME | --cc=NAME  
           Use "NAME" as the C compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as gcc, c89, cc, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4  
           Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)  
           *only* works if CPP_EEOPTIONS.h allows this.  
   
     -ignoretime | -ignore_time | --ignoretime | --ignore_time  
           Ignore all the "wall clock" routines entirely.  This will  
           not in any way hurt the model results -- it simply means  
           that the code that checks how long the model spends in  
           various routines will give junk values.  
   
     -ts | --ts  
           Produce timing information per timestep  
     -papis | --papis  
           Produce summary MFlop/s (and IPC) with PAPI per timestep  
     -pcls | --pcls  
           Produce summary MFlop/s etc. with PCL per timestep  
     -foolad | --foolad  
           Fool the AD code generator  
     -papi | --papi  
           Performance analysis with PAPI  
     -pcl | --pcl  
           Performance analysis with PCL  
     -hpmt | --hpmt  
           Performance analysis with the HPM Toolkit  
   
     -gsl | --gsl  
           Use GSL to control floating point rounding and precision  
     -devel | --devel  
           Add additional warning and debugging flags for development  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from \$PATH/include, link to libraries  
           from \$PATH/lib and use binaries from \$PATH/bin.  
   
     -omp | --omp  
           Activate OpenMP code + use Compiler option OMPFLAG  
     -omp=OMPFLAG | --omp=OMPFLAG  
           Activate OpenMP code + use Compiler option OMPFLAG  
   
     -es | --es | -embed-source | --embed-source  
           Embed a tarball containing the full source code  
           (including the Makefile, etc.) used to build the  
           executable [off by default]  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/public/devel_HOWTO/  
   
 EOF  
   
     exit 1  
606  }  }
607    
608  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
# Line 654  get_fortran_c_namemangling()  { Line 610  get_fortran_c_namemangling()  {
610    
611      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
612      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
613          return 0          return 0
614      fi      fi
615        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
616    
617      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
618    
619      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
620  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
621  EOF  EOF
622      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
623        echo ' '$COMM >> $LOGFILE
624        $COMM >> $LOGFILE 2>&1
625      RETVAL=$?      RETVAL=$?
626      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
627          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
628          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
629    
630  WARNING: C test compile fails   WARNING: C test compile fails
631  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
632  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
633  EOF  EOF
634          return 1          return 1
635      fi      fi
# Line 678  EOF Line 637  EOF
637      RETVAL=$?      RETVAL=$?
638      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
639          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
640          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
641    
642  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
643  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
644  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
645  EOF  EOF
646          return 1          return 1
647      fi      fi
# Line 692  EOF Line 651  EOF
651        call tsub( string )        call tsub( string )
652        end        end
653  EOF  EOF
654      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
655        echo ' '$COMM >> $LOGFILE
656        $COMM >> $LOGFILE 2>&1
657      RETVAL=$?      RETVAL=$?
658      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
659          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
660          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
661    
662  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
663  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
664  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
665  EOF  EOF
666          return 1          return 1
667      fi      fi
# Line 708  EOF Line 669  EOF
669      RETVAL=$?      RETVAL=$?
670      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
671          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
672          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
673    
674  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
675  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
676  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
677  EOF  EOF
678          return 1          return 1
679      fi      fi
# Line 738  EOF Line 699  EOF
699    
700      #  cleanup the testing files      #  cleanup the testing files
701      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
702    
703        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
704    }
705    
706  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
707        echo >> $LOGFILE
708        echo "running: check_HAVE_CLOC()" >> $LOGFILE
709      get_fortran_c_namemangling      get_fortran_c_namemangling
710      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
711  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 759  void FC_NAMEMANGLE(cloc) ( double *curti Line 723  void FC_NAMEMANGLE(cloc) ( double *curti
723  }  }
724  EOF  EOF
725      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
726      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
727      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
728      RET_C=$?      RET_C=$?
729      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
730        program hello        program hello
# Line 771  EOF Line 735  EOF
735        end        end
736  EOF  EOF
737      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
738      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
739      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
740      RET_F=$?      RET_F=$?
741      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
742      RETVAL=$?      RETVAL=$?
743      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
744          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
745      fi      fi
746      rm -f genmake_tc*      rm -f genmake_tc*
747        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
748  }  }
749    
   
750  check_HAVE_SIGREG()  {  check_HAVE_SIGREG()  {
751      if test ! "x$HAVE_SIGREG" = x ; then      if test ! "x$HAVE_SIGREG" = x ; then
752          return          return
753      fi      fi
754        echo >> $LOGFILE
755        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
756      get_fortran_c_namemangling      get_fortran_c_namemangling
757      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
758  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 820  void FC_NAMEMANGLE(sigreg) (int * aip) Line 785  void FC_NAMEMANGLE(sigreg) (int * aip)
785  }  }
786  EOF  EOF
787      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
788      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
789      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
790      RET_C=$?      RET_C=$?
791      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
792        program hello        program hello
# Line 831  EOF Line 796  EOF
796        call sigreg(anint)        call sigreg(anint)
797        end        end
798  EOF  EOF
799      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SIGREG()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
800      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
801      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
802      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
803      RETVAL=$?      RETVAL=$?
804      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
805          HAVE_SIGREG=t          HAVE_SIGREG=t
         DEFINES="$DEFINES -DHAVE_SIGREG"  
806      fi      fi
807      rm -f genmake_tc*      rm -f genmake_tc*
808        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
809  }  }
810    
   
811  check_HAVE_SETRLSTK()  {  check_HAVE_SETRLSTK()  {
     if test "x$HAVE_SETRLSTK" = xt ; then  
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
         return  
     fi    
812      if test ! "x$HAVE_SETRLSTK" = x ; then      if test ! "x$HAVE_SETRLSTK" = x ; then
813          return          return
814      fi      fi
815        echo >> $LOGFILE
816        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
817      get_fortran_c_namemangling      get_fortran_c_namemangling
818      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
819  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 870  void FC_NAMEMANGLE(setrlstk) () Line 830  void FC_NAMEMANGLE(setrlstk) ()
830  }  }
831  EOF  EOF
832      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
833      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
834      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
835      RET_C=$?      RET_C=$?
836      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
837        program hello        program hello
# Line 879  EOF Line 839  EOF
839        call setrlstk()        call setrlstk()
840        end        end
841  EOF  EOF
842      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
843      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
844      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
845      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
846      RETVAL=$?      RETVAL=$?
847      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
848          HAVE_SETRLSTK=t          HAVE_SETRLSTK=t
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
849      fi      fi
850      rm -f genmake_tc*      rm -f genmake_tc*
851        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
852  }  }
853    
   
854  check_HAVE_STAT()  {  check_HAVE_STAT()  {
855        echo >> $LOGFILE
856        echo "running: check_HAVE_STAT()" >> $LOGFILE
857      get_fortran_c_namemangling      get_fortran_c_namemangling
858      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
859  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 916  void FC_NAMEMANGLE(tfsize) ( int *nbyte Line 875  void FC_NAMEMANGLE(tfsize) ( int *nbyte
875  }  }
876  EOF  EOF
877      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
878      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
879      $COMM >> genmake_tc.log 2>&1      $COMM >> genmake_tc.log 2>&1
880      RET_C=$?      RET_C=$?
881      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
# Line 926  EOF Line 885  EOF
885        print *," HELLO WORLD", nbyte        print *," HELLO WORLD", nbyte
886        end        end
887  EOF  EOF
888      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_STAT()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
889      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
890      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
891      $COMM >> genmake_tc.log 2>&1      $COMM >> genmake_tc.log 2>&1
892      RETVAL=$?      RETVAL=$?
893      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
894          HAVE_STAT=t          HAVE_STAT=t
         DEFINES="$DEFINES -DHAVE_STAT"  
895      fi      fi
896      rm -f genmake_tc*      rm -f genmake_tc*
897        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
898  }  }
899    
   
900  check_netcdf_libs()  {  check_netcdf_libs()  {
901      if test ! "x$SKIP_NETCDF_CHECK" = x ; then      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
902          return          return
903      fi      fi
904      echo >> genmake_warnings      echo >> $LOGFILE
905      echo "running: check_netcdf_libs()" >> genmake_warnings      echo "running: check_netcdf_libs()" >> $LOGFILE
906      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
907        program fgennc        program fgennc
908  #include "netcdf.inc"  #include "netcdf.inc"
# Line 964  EOF Line 920  EOF
920        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
921        end        end
922  EOF  EOF
923      echo "===  genmake_tnc.F  ===" > genmake_tnc.log      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
924      cat genmake_tnc.F >> genmake_tnc.log      cat genmake_tnc.F >> genmake_tnc.log
925      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log      echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
926      RET_CPP=f      RET_CPP=f
927      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
928      echo "$COMM" >> genmake_tnc.log      echo "$COMM" >> genmake_tnc.log
# Line 982  EOF Line 938  EOF
938      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
939          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
940      RET_COMPILE=$?      RET_COMPILE=$?
941      cat genmake_tnc.log >> genmake_warnings      cat genmake_tnc.log >> $LOGFILE
942    
943      #EH3  Remove test program execution for machines that either disallow      #EH3  Remove test program execution for machines that either disallow
944      #EH3  execution or cannot support it (eg. cross-compilers)      #EH3  execution or cannot support it (eg. cross-compilers)
# Line 993  EOF Line 949  EOF
949    
950      if test "x$RET_COMPILE" = x0 ; then      if test "x$RET_COMPILE" = x0 ; then
951          HAVE_NETCDF=t          HAVE_NETCDF=t
952            echo "check_netcdf: successful" >> $LOGFILE
953      else      else
954          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
955          echo "try again with added '-lnetcdf'" > genmake_tnc.log          echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
956          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
957          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
958          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
# Line 1003  EOF Line 960  EOF
960              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
961              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
962          RET_COMPILE=$?          RET_COMPILE=$?
963          cat genmake_tnc.log >> genmake_warnings          echo >> $LOGFILE
964            cat genmake_tnc.log >> $LOGFILE
965          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
966              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
967              HAVE_NETCDF=t              HAVE_NETCDF=t
968                echo "check_netcdf: successful" >> $LOGFILE
969          else          else
970          # try again with "-lnetcdff" added to the libs          # try again with "-lnetcdff" added to the libs
971              echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log              echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
972              echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log              echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
973              echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log              echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
974              echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log              echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
# Line 1017  EOF Line 976  EOF
976                  &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \                  &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
977                  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1                  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
978              RET_COMPILE=$?              RET_COMPILE=$?
979              cat genmake_tnc.log >> genmake_warnings              echo >> $LOGFILE
980                cat genmake_tnc.log >> $LOGFILE
981              if test "x$RET_COMPILE" = x0 ; then              if test "x$RET_COMPILE" = x0 ; then
982                  LIBS="$LIBS -lnetcdff -lnetcdf"                  LIBS="$LIBS -lnetcdff -lnetcdf"
983                  HAVE_NETCDF=t                  HAVE_NETCDF=t
984                    echo "check_netcdf: successful" >> $LOGFILE
985              fi              fi
986          fi          fi
987      fi      fi
988      rm -f genmake_tnc*      rm -f genmake_tnc*
989        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
990  }  }
991    
992    check_lapack_libs()  {
993        if test ! "x$SKIP_LAPACK_CHECK" = x ; then
994            return
995        fi
996        echo >> $LOGFILE
997        echo "running: check_lapack_libs()" >> $LOGFILE
998        cat <<EOF > genmake_tla.F
999          program fgenla
1000          integer info
1001          integer ipiv( 2 )
1002          double precision ab( 4, 2 ), b( 2 )
1003          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1004          data b / 1., 1. /
1005          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1006          IF (info .NE. 0) write(*,*) 'Error:', info
1007          write(*,*) b
1008          end
1009    EOF
1010        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1011        cat genmake_tla.F >> genmake_tla.log
1012        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1013        RET_CPP=f
1014        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1015        echo "$COMM" >> genmake_tla.log
1016        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1017        if test "x$RET_CPP" = xf ; then
1018            echo "  WARNING: CPP failed to pre-process the lapack test." \
1019                >> genmake_tla.log
1020            echo "    Please check that \$INCLUDES is properly set." \
1021                >> genmake_tla.log
1022        fi
1023        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1024        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1025        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1026            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1027        RET_COMPILE=$?
1028        cat genmake_tla.log >> $LOGFILE
1029    
1030        # test program execution not always possible (see check_netcdf_libs)
1031        #
1032        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1033        #RETVAL=$?
1034        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1035    
1036        if test "x$RET_COMPILE" = x0 ; then
1037            HAVE_LAPACK=t
1038            echo "check_lapack: successful" >> $LOGFILE
1039        else
1040            # try again with "-llapack" added to the libs
1041            echo "==> try again with added '-llapack'" > genmake_tla.log
1042            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1043            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1044            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1045            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1046                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1047                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1048            RET_COMPILE=$?
1049            echo >> $LOGFILE
1050            cat genmake_tla.log >> $LOGFILE
1051            if test "x$RET_COMPILE" = x0 ; then
1052                LIBS="$LIBS -llapack"
1053                HAVE_LAPACK=t
1054                echo "check_lapack: successful" >> $LOGFILE
1055            else
1056            # try again with "-lf77blas -lcblas" added to the libs
1057                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1058                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1059                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1060                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1061                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1062                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1063                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1064                RET_COMPILE=$?
1065                echo >> $LOGFILE
1066                cat genmake_tla.log >> $LOGFILE
1067                if test "x$RET_COMPILE" = x0 ; then
1068                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1069                    HAVE_LAPACK=t
1070                    echo "check_lapack: successful" >> $LOGFILE
1071                else
1072                # try again with "-latlas" added to the libs
1073                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1074                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1075                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1076                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1077                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1078                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1079                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1080                    RET_COMPILE=$?
1081                    echo >> $LOGFILE
1082                    cat genmake_tla.log >> $LOGFILE
1083                    if test "x$RET_COMPILE" = x0 ; then
1084                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1085                        HAVE_LAPACK=t
1086                        echo "check_lapack: successful" >> $LOGFILE
1087                    fi
1088                fi
1089            fi
1090        fi
1091        rm -f genmake_tla*
1092        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1093    }
1094    
1095    check_HAVE_FLUSH()  {
1096        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1097            return
1098        fi
1099        echo >> $LOGFILE
1100        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1101        cat <<EOF > genmake_tflsh.$FS
1102          program fgenflsh
1103          integer iounit
1104          character*9 fname
1105          iounit = 26
1106          fname = 'tmp.tflsh'
1107          open(iounit,FILE=fname,STATUS='unknown')
1108          write(iounit,*) 'genmake_tflsh: hello'
1109          call flush(iounit)
1110          close(iounit)
1111          end
1112    EOF
1113        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1114        cat genmake_tflsh.$FS >> genmake_tflsh.log
1115        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1116    
1117        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1118        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1119        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1120            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1121        RET_COMPILE=$?
1122    
1123        if test "x$RET_COMPILE" = x0 ; then
1124            HAVE_FLUSH=t
1125            #cat genmake_tflsh.log >> $LOGFILE
1126            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1127        else
1128            HAVE_FLUSH=f
1129            cat genmake_tflsh.log >> $LOGFILE
1130        fi
1131        rm -f genmake_tflsh*
1132        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1133    }
1134    
1135  ###############################################################################  ###############################################################################
1136  #   Sequential part of script starts here  #   Sequential part of script starts here
# Line 1052  DISABLE= Line 1155  DISABLE=
1155  # MAKEDEPEND=  # MAKEDEPEND=
1156  PKG_DEPEND=  PKG_DEPEND=
1157  PKG_GROUPS=  PKG_GROUPS=
1158  DUMPSTATE=t  DUMPSTATE=f
1159  OPTFILE=  OPTFILE=
1160  INCLUDES="-I. $INCLUDES"  INCLUDES="-I. $INCLUDES"
1161  FFLAGS=  FFLAGS=
# Line 1060  FOPTIM= Line 1163  FOPTIM=
1163  FEXTRAFLAGS=  FEXTRAFLAGS=
1164  USE_EXTENDED_SRC=  USE_EXTENDED_SRC=
1165  EXTENDED_SRC_FLAG=  EXTENDED_SRC_FLAG=
1166    GET_FC_VERSION=
1167  CFLAGS=  CFLAGS=
1168  KFLAGS1=  KFLAGS1=
1169  KFLAGS2=  KFLAGS2=
# Line 1094  HAVE_STAT= Line 1198  HAVE_STAT=
1198  HAVE_NETCDF=  HAVE_NETCDF=
1199  HAVE_ETIME=  HAVE_ETIME=
1200  IGNORE_TIME=  IGNORE_TIME=
1201    HAVE_LAPACK=
1202    HAVE_FLUSH=
1203    
1204  MODS=  MODS=
1205  TOOLSDIR=  TOOLSDIR=
# Line 1101  SOURCEDIRS= Line 1207  SOURCEDIRS=
1207  INCLUDEDIRS=  INCLUDEDIRS=
1208  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1209    
1210    #- local config file
1211    gm_local="genmake_local"
1212    
1213  G2ARGS=  G2ARGS=
1214  BASH=  BASH=
1215  PWD=`pwd`  PWD=`pwd`
# Line 1116  MACHINE=`uname -a` Line 1225  MACHINE=`uname -a`
1225  EXECUTABLE=  EXECUTABLE=
1226  EXEHOOK=  EXEHOOK=
1227  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1228  IEEE=  IEEE=
1229  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1230      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
# Line 1138  SVD_TAMC_FLAGS= Line 1246  SVD_TAMC_FLAGS=
1246  TAMC_EXTRA=  TAMC_EXTRA=
1247    
1248  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1249  gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS MAKEFILE MAKEDEPEND PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1250  gm_s2="FC IEEE USE_R4 TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1251    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1252    
1253  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1254  gm_s3="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1255  gm_s4="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1256  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1257  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1258  gm_s7="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1259    
1260  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1261  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1262  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1263  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA"
1264    
1265  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1266  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1267    
1268  cat <<EOF  cat <<EOF
1269    
1270  GENMAKE :  GENMAKE :
1271    
1272  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1273  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1274    or for more detail see the Developer's HOWTO manual at:
1275    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1276    
1277  EOF  EOF
1278    
1279  #- clean-up previous genmake logfiles:  LOGFILE="genmake.log"
1280  rm -f genmake_state genmake_*optfile genmake_warnings genmake_errors  #- clean-up previous genmake logfiles:
1281    rm -f genmake_state genmake_*optfile $LOGFILE
1282    
1283  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 printf "  getting local config information:  "  
 if test -f $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1284    
1285  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1286  #parse_options  #parse_options
# Line 1199  for ac_option in "$@" ; do Line 1299  for ac_option in "$@" ; do
1299      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1300    
1301      case $ac_option in      case $ac_option in
1302            
1303          -help | --help | -h | --h)          -help | --help | -h | --h)
1304              usage ;;              usage ;;
1305            
1306          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1307              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1308          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1309              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1310          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1311              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1312            
1313          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1314              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1315          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1316              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1317            
1318          -pdepend | --pdepend)          -pdepend | --pdepend)
1319              ac_prev=PKG_DEPEND ;;              ac_prev=PKG_DEPEND ;;
1320          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1321              PKG_DEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1322            
1323          -pgroups | --pgroups)          -pgroups | --pgroups)
1324              ac_prev=PKG_GROUPS ;;              ac_prev=PKG_GROUPS ;;
1325          -pgroups=* | --pgroups=*)          -pgroups=* | --pgroups=*)
1326              PKG_GROUPS=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1327            
1328          -make | --make | -m | --m)          -make | --make | -m | --m)
1329              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1330          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1331              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1332            
1333          -bash | --bash)          -bash | --bash)
1334              ac_prev=BASH ;;              ac_prev=BASH ;;
1335          -bash=* | --bash=*)          -bash=* | --bash=*)
1336              BASH=$ac_optarg ;;              BASH=$ac_optarg ;;
1337            
1338          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1339              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1340          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
1341              MAKEDEPEND=$ac_optarg ;;              MAKEDEPEND=$ac_optarg ;;
1342            
1343          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -mf | --mf)
1344              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1345          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1346              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1347            
1348          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1349              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1350              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1351              echo              echo
1352              usage              usage
1353              ;;              ;;
1354            
1355          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1356              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1357          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1358              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1359            
1360          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1361              ac_prev=MODS ;;              ac_prev=MODS ;;
1362          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1363              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1364            
1365          -disable | --disable)          -disable | --disable)
1366              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1367          -disable=* | --disable=*)          -disable=* | --disable=*)
1368              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1369            
1370          -enable | --enable)          -enable | --enable)
1371              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1372          -enable=* | --enable=*)          -enable=* | --enable=*)
1373              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1374            
1375          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1376              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1377          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 1281  for ac_option in "$@" ; do Line 1381  for ac_option in "$@" ; do
1381  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1382  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1383  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1384            
1385          -cc | --cc)          -cc | --cc)
1386              ac_prev=CC ;;              ac_prev=CC ;;
1387          -cc=* | --cc=*)          -cc=* | --cc=*)
1388              CC=$ac_optarg ;;              CC=$ac_optarg ;;
1389            
1390          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1391              ac_prev=FC ;;              ac_prev=FC ;;
1392          -fc=* | --fc=*)          -fc=* | --fc=*)
1393              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1394            
1395          -fs | --fs)          -fs | --fs)
1396              ac_prev=FS ;;              ac_prev=FS ;;
1397          -fs=* | --fs=*)          -fs=* | --fs=*)
1398              FS=$ac_optarg ;;              FS=$ac_optarg ;;
1399            
1400          -fs90 | --fs90)          -fs90 | --fs90)
1401              ac_prev=FS90 ;;              ac_prev=FS90 ;;
1402          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1403              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
           
         -ieee | --ieee)  
             IEEE=true ;;  
         -noieee | --noieee)  
             IEEE= ;;  
1404    
1405          -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )          -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1406              USE_R4=true ;;              USE_R4=true ;;
1407    
1408            -ieee | --ieee)
1409                IEEE=true ;;
1410            -noieee | --noieee)
1411                echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1412            -devel | --devel)
1413                IEEE=true ; DEVEL=true ;;
1414            -gsl | --gsl)
1415                GSL=true ;;
1416    
1417          -ts | --ts)          -ts | --ts)
1418              TS=true ;;              TS=true ;;
1419          -papis | --papis)          -papis | --papis)
# Line 1325  for ac_option in "$@" ; do Line 1429  for ac_option in "$@" ; do
1429          -hpmt | --hpmt)          -hpmt | --hpmt)
1430              HPMT=true ;;              HPMT=true ;;
1431    
         -gsl | --gsl)  
             GSL=true ;;  
   
         -devel | --devel)  
             DEVEL=true ;;  
   
1432          -mpi | --mpi)          -mpi | --mpi)
1433              MPI=true ;;              MPI=true ;;
1434          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1435              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1436              MPI=true ;;              MPI=true ;;
1437            
1438          -omp | --omp)          -omp | --omp)
1439              OMP=true ;;              OMP=true ;;
1440          -omp=* | --omp=*)          -omp=* | --omp=*)
1441              OMPFLAG=$ac_optarg              OMPFLAG=$ac_optarg
1442              OMP=true ;;              OMP=true ;;
1443            
1444          -ds | --ds)          -ds | --ds)
1445              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1446            
1447            -extra_flag | --extra_flag)
1448                ac_prev=FEXTRAFLAGS ;;
1449            -extra_flag=* | --extra_flag=*)
1450                FEXTRAFLAGS=$ac_optarg ;;
1451    
1452          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1453              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1454          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 1355  for ac_option in "$@" ; do Line 1458  for ac_option in "$@" ; do
1458              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1459          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1460              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1461            
1462          -ignoretime | -ignore_time | --ignoretime | --ignore_time)          -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1463              IGNORE_TIME="-DIGNORE_TIME" ;;              IGNORE_TIME="-DIGNORE_TIME" ;;
1464    
# Line 1366  for ac_option in "$@" ; do Line 1469  for ac_option in "$@" ; do
1469              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1470              usage              usage
1471              ;;              ;;
1472            
1473          *)          *)
1474              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1475              usage              usage
1476              ;;              ;;
1477            
1478      esac      esac
1479    
1480  done  done
1481    
1482    printf "  getting local config information:  "
1483    if test -f $gm_local ; then
1484        echo "using $gm_local"
1485        . $gm_local
1486    else
1487        echo "none found"
1488    fi
1489    
1490  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1491      echo      echo
1492      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1493      echo "  file.  This file format is no longer supported.  For directions on"      echo "  file.  This file format is no longer supported.  For directions on"
1494      echo "  how to setup and use the new \"genmake2\" script, please see:"      echo "  how to setup and use the new \"genmake2\" script, please see:"
1495      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1496      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1497      echo "WARNING: ignore \"./.genmakerc\" and continue."      echo "WARNING: ignore \"./.genmakerc\" and continue."
1498      echo      echo
# Line 1397  if test "x${ROOTDIR}" = x ; then Line 1507  if test "x${ROOTDIR}" = x ; then
1507          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1508              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1509                  ROOTDIR=$d                  ROOTDIR=$d
1510                  printf "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1511                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1512                  break                  break
1513              fi              fi
1514          done          done
# Line 1430  if test "x$MAKEFILE" = x ; then Line 1540  if test "x$MAKEFILE" = x ; then
1540      MAKEFILE="Makefile"      MAKEFILE="Makefile"
1541  fi  fi
1542    
1543  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:"
1544  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1545      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1546          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1547          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1548          find_possible_configs          find_possible_optfile
1549      else      else
1550          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1551      fi      fi
# Line 1450  if test "x$OPTFILE" != xNONE ; then Line 1560  if test "x$OPTFILE" != xNONE ; then
1560              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1561              exit 1              exit 1
1562          fi          fi
1563          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1564              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1565          fi          fi
1566      else      else
# Line 1459  if test "x$OPTFILE" != xNONE ; then Line 1569  if test "x$OPTFILE" != xNONE ; then
1569      fi      fi
1570  fi  fi
1571    
1572  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1573  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1574      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
1575          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
# Line 1477  if test "x${AD_OPTFILE}" != xNONE ; then Line 1587  if test "x${AD_OPTFILE}" != xNONE ; then
1587              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1588              exit 1              exit 1
1589          fi          fi
1590          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1591              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1592          fi          fi
1593      else      else
# Line 1505  Error: no Fortran compiler: please speci Line 1615  Error: no Fortran compiler: please speci
1615  EOF  EOF
1616      exit 1      exit 1
1617  fi  fi
1618    if test "x$GET_FC_VERSION" != x ; then
1619      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1620      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1621      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1622      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1623      if test -s genmake_fc_vers1 ; then
1624        cat genmake_fc_vers1 >> $LOGFILE
1625      else
1626        cat genmake_fc_vers2 >> $LOGFILE
1627      fi
1628      echo "<-- compiler version ----" >> $LOGFILE
1629      rm -f genmake_fc_vers1 genmake_fc_vers2
1630    fi
1631    
1632  if test "x$CC" = x ; then  if test "x$CC" = x ; then
1633      CC=cc      look_for_C_compilers
 #     cat <<EOF 1>&2  
 # Error: no C compiler: please specify using one of the following:  
 #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"  
 #   2) the "-cc=XXX" command-line option  
 #   3) the "./genmake_local" file  
 # EOF  
 #     exit 1  
1634  fi  fi
1635    
1636  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1637      LINK=$FC      LINK=$FC
1638  fi  fi
# Line 1522  if test "x$MAKE" = x ; then Line 1640  if test "x$MAKE" = x ; then
1640      MAKE="make"      MAKE="make"
1641  fi  fi
1642  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1643      CPP=cpp      CPP="cpp -traditional -P"
1644  fi  fi
1645  #EH3 === UGLY ===  #EH3 === UGLY ===
1646  #  The following is an ugly little hack to check for $CPP in /lib/ and  #  The following is an ugly little hack to check for $CPP in /lib/ and
# Line 1549  EOF Line 1667  EOF
1667  else  else
1668      rm -f test_cpp      rm -f test_cpp
1669  fi  fi
1670    
1671  look_for_makedepend  look_for_makedepend
1672    
1673    #  Check that soft-link command is set and usable
1674  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1675      LN="ln -s"      LN="ln -s"
1676  fi  fi
# Line 1559  RETVAL=$? Line 1680  RETVAL=$?
1680  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1681      cat <<EOF 1>&2      cat <<EOF 1>&2
1682    
1683  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1684    command in the optfile.    command in the optfile.
1685    
1686  EOF  EOF
# Line 1577  check_for_broken_Ff Line 1698  check_for_broken_Ff
1698    
1699  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1700        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1701        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI"
1702  fi  fi
1703  if test ! "x$OMP" = x ; then  if test ! "x$OMP" = x ; then
1704        echo "  Add OMPFLAG and turn on OpenMP cpp macros"        echo "  Add OMPFLAG and turn on OpenMP cpp macros"
# Line 1594  fi Line 1715  fi
1715  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1716        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
1717        if test ! "x$FOOLAD" = x ; then        if test ! "x$FOOLAD" = x ; then
1718              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1719        else        else
1720              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1721        fi        fi
# Line 1630  if test ! "x$PAPI" = x ; then Line 1751  if test ! "x$PAPI" = x ; then
1751            echo "  Sticking with PAPI flop summary per timestep!"            echo "  Sticking with PAPI flop summary per timestep!"
1752        else        else
1753            echo "  Turning on performance analysis with PAPI"            echo "  Turning on performance analysis with PAPI"
1754            echo "  Please make sure PAPIINC, PAPILIB are defined"            echo "  Please make sure PAPIINC, PAPILIB are defined"
1755            DEFINES="$DEFINES -DUSE_PAPI"            DEFINES="$DEFINES -DUSE_PAPI"
1756            INCLUDES="$INCLUDES $PAPIINC"            INCLUDES="$INCLUDES $PAPIINC"
1757            LIBS="$LIBS $PAPILIB"            LIBS="$LIBS $PAPILIB"
# Line 1642  if test ! "x$PCL" = x ; then Line 1763  if test ! "x$PCL" = x ; then
1763            echo "  Sticking with PCL flop summary per timestep!"            echo "  Sticking with PCL flop summary per timestep!"
1764        else        else
1765            echo "  Turning on performance analysis with PCL"            echo "  Turning on performance analysis with PCL"
1766            echo "  Please make sure PCLINC, PCLLIB are defined"            echo "  Please make sure PCLINC, PCLLIB are defined"
1767            DEFINES="$DEFINES -DUSE_PCL"            DEFINES="$DEFINES -DUSE_PCL"
1768            INCLUDES="$INCLUDES $PCLINC"            INCLUDES="$INCLUDES $PCLINC"
1769            LIBS="$LIBS $PCLLIB"            LIBS="$LIBS $PCLLIB"
# Line 1652  if test ! "x$HPMT" = x ; then Line 1773  if test ! "x$HPMT" = x ; then
1773        if test ! "x$PAPI" = x ; then        if test ! "x$PAPI" = x ; then
1774            echo "  PAPI and the HPM Toolkit cannot co-exist!"            echo "  PAPI and the HPM Toolkit cannot co-exist!"
1775            echo "  Sticking with PAPI!"            echo "  Sticking with PAPI!"
1776        else if test ! "x$PCL" = x ; then        else
1777            if test ! "x$PCL" = x ; then
1778            echo "  PCL and the HPM Toolkit cannot co-exist!"            echo "  PCL and the HPM Toolkit cannot co-exist!"
1779            echo "  Sticking with PCL!"            echo "  Sticking with PCL!"
1780        else          else
1781            echo "  Turning on performance analysis with the HPM Toolkit"            echo "  Turning on performance analysis with the HPM Toolkit"
1782            echo "  Please make sure HPMTINC, HPMTLIB are defined"            echo "  Please make sure HPMTINC, HPMTLIB are defined"
1783            DEFINES="$DEFINES -DUSE_LIBHPM"            DEFINES="$DEFINES -DUSE_LIBHPM"
1784            INCLUDES="$INCLUDES $HPMTINC"            INCLUDES="$INCLUDES $HPMTINC"
1785            LIBS="$LIBS $HPMTLIB"            LIBS="$LIBS $HPMTLIB"
1786        fi          fi
1787        fi        fi
1788  fi  fi
1789  if test ! "x$GSL" = x ; then  if test ! "x$GSL" = x ; then
# Line 1742  rm -f genmake_tcomp* Line 1864  rm -f genmake_tcomp*
1864  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1865  check_HAVE_CLOC  check_HAVE_CLOC
1866  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1867        DEFINES="$DEFINES -DHAVE_CLOC"
1868      echo "yes"      echo "yes"
1869  else  else
1870      echo "no"      echo "no"
# Line 1756  rm -f genmake_t* Line 1879  rm -f genmake_t*
1879  printf "  Can we unlimit the stack size using $FC...  "  printf "  Can we unlimit the stack size using $FC...  "
1880  check_HAVE_SETRLSTK  check_HAVE_SETRLSTK
1881  if test "x$HAVE_SETRLSTK" = xt ; then  if test "x$HAVE_SETRLSTK" = xt ; then
1882        DEFINES="$DEFINES -DHAVE_SETRLSTK"
1883      echo "yes"      echo "yes"
1884  else  else
1885      echo "no"      echo "no"
# Line 1765  rm -f genmake_t* Line 1889  rm -f genmake_t*
1889  printf "  Can we register a signal handler using $FC...  "  printf "  Can we register a signal handler using $FC...  "
1890  check_HAVE_SIGREG  check_HAVE_SIGREG
1891  if test "x$HAVE_SIGREG" = xt ; then  if test "x$HAVE_SIGREG" = xt ; then
1892        DEFINES="$DEFINES -DHAVE_SIGREG"
1893      echo "yes"      echo "yes"
1894  else  else
1895      echo "no"      echo "no"
# Line 1774  rm -f genmake_t* Line 1899  rm -f genmake_t*
1899  printf "  Can we use stat() through C calls...  "  printf "  Can we use stat() through C calls...  "
1900  check_HAVE_STAT  check_HAVE_STAT
1901  if test "x$HAVE_STAT" != x ; then  if test "x$HAVE_STAT" != x ; then
1902        DEFINES="$DEFINES -DHAVE_STAT"
1903      echo "yes"      echo "yes"
1904  else  else
1905      echo "no"      echo "no"
# Line 1783  rm -f genmake_t* Line 1909  rm -f genmake_t*
1909  printf "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
1910  check_netcdf_libs  check_netcdf_libs
1911  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
1912        DEFINES="$DEFINES -DHAVE_NETCDF"
1913        echo "yes"
1914    else
1915        echo "no"
1916    fi
1917    
1918    printf "  Can we create LAPACK-enabled binaries...  "
1919    check_lapack_libs
1920    if test "x$HAVE_LAPACK" != x ; then
1921        DEFINES="$DEFINES -DHAVE_LAPACK"
1922        echo "yes"
1923    else
1924        echo "no"
1925    fi
1926    
1927    printf "  Can we call FLUSH intrinsic subroutine...  "
1928    check_HAVE_FLUSH
1929    if test "x$HAVE_FLUSH" = xt ; then
1930        DEFINES="$DEFINES -DHAVE_FLUSH"
1931      echo "yes"      echo "yes"
1932  else  else
1933      echo "no"      echo "no"
1934  fi  fi
 DEFINES="$DEFINES $IGNORE_TIME"  
1935    
1936    DEFINES="$DEFINES $IGNORE_TIME"
1937  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
1938      build_embed_encode      build_embed_encode
1939  fi  fi
1940  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
1941      ENABLE="$ENABLE embed_files"      ENABLE="$ENABLE embed_files"
1942    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
1943  fi  fi
1944    
   
1945  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1946  printf "  Adding MODS directories: "  printf "  Adding MODS directories: "
1947  for d in $MODS ; do  for d in $MODS ; do
# Line 1812  for d in $MODS ; do Line 1957  for d in $MODS ; do
1957  done  done
1958  echo  echo
1959    
1960  if test "x${PLATFORM}" = x ; then  #if test "x${PLATFORM}" = x ; then
1961      PLATFORM=$p_PLATFORM  #    PLATFORM=$p_PLATFORM
1962  fi  #fi
1963    
1964  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1965      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
# Line 1972  else Line 2117  else
2117          exit 1          exit 1
2118      else      else
2119          echo "    using PKG_LIST=\"$PKG_LIST\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2120          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2121          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2122          RETVAL=$?          RETVAL=$?
2123          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
# Line 2022  for i in $PACKAGES ; do Line 2167  for i in $PACKAGES ; do
2167      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2168      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2169          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2170          exit 1          exit 1
2171      fi      fi
2172      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2173  done  done
# Line 2067  else Line 2212  else
2212          echo "Error: problem encountered while building source files in pkg/mnc:"          echo "Error: problem encountered while building source files in pkg/mnc:"
2213          cat make_mnc.errors 1>&2          cat make_mnc.errors 1>&2
2214          if test "x$mnc_in" = x0 ; then          if test "x$mnc_in" = x0 ; then
2215              exit 1              exit 1
2216          else          else
2217              DISABLE="$DISABLE mnc"              DISABLE="$DISABLE mnc"
2218          fi          fi
# Line 2100  EOF Line 2245  EOF
2245      fi      fi
2246  fi  fi
2247    
2248    #  Check for package RADTRANS: if LAPACK is not available,
2249    #  then issue a warning that the direct radtrans solver is not available.
2250    if test "x$HAVE_LAPACK" != xt ; then
2251        echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1
2252        RETVAL=$?
2253        if test "x$RETVAL" = x0 ; then
2254            cat <<EOF
2255    *********************************************************************
2256    WARNING: the "radtrans" package was enabled but tests failed to
2257      compile LAPACK applications.  This means that the direct radtrans
2258      solver is not available and compilation will fail if it is enabled.
2259      If you want to use the direct solver, please check that:
2260    
2261      1) LAPACK is correctly installed for this compiler and
2262      2) the LIBS variable (within the "optfile") specifies the correct
2263         LAPACK library to link against.
2264    *********************************************************************
2265    EOF
2266        fi
2267    fi
2268    
2269  if  test "x${PKG_DEPEND}" != x ; then  if  test "x${PKG_DEPEND}" != x ; then
2270    echo "  applying package dependency rules"    echo "  applying package dependency rules"
2271    ck=    ck=
# Line 2145  if  test "x${PKG_DEPEND}" != x ; then Line 2311  if  test "x${PKG_DEPEND}" != x ; then
2311    
2312          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2313          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2314              #echo "   " $pname ": need to add :" $dname              #echo "   " $pname ": need to add :" $dname
2315              in_dis="f"              in_dis="f"
2316              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2317                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 2170  if  test "x${PKG_DEPEND}" != x ; then Line 2336  if  test "x${PKG_DEPEND}" != x ; then
2336              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2337              exit 1              exit 1
2338          fi          fi
2339          i=`echo "$i + 1" | bc -l`          i=`echo "$i + 1" | bc -l`
2340          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2341      done      done
2342      ck=$ck"t"      ck=$ck"t"
# Line 2211  for n in $names ; do Line 2377  for n in $names ; do
2377          done          done
2378          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2379              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2380              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2381          fi          fi
2382      fi      fi
2383  done  done
# Line 2224  for i in $PACKAGES ; do Line 2390  for i in $PACKAGES ; do
2390  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2391      case $i in      case $i in
2392          aim_v23)          aim_v23)
2393              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2394              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
2395              ;;              ;;
2396      esac      esac
# Line 2266  for i in $spaths ; do Line 2432  for i in $spaths ; do
2432      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2433          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2434          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2435          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2436          for n in $names ; do          for n in $names ; do
2437              test_for_package_in_cpp_options $CPP_OPTIONS $n              test_for_package_in_cpp_options $CPP_OPTIONS $n
2438          done          done
2439      fi      fi
2440      try="$i/CPP_EEOPTIONS.h"      try="$i/CPP_EEOPTIONS.h"
2441      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2442          echo "    found CPP_EEOPTIONS=\"$try\""          echo "    found CPP_EEOPTIONS=\"$try\""
2443          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2444  #**** not yet enabled ****  #**** not yet enabled ****
2445  #        test_for_mpi_in_cpp_eeoptions $try  #        test_for_mpi_in_cpp_eeoptions $try
2446  #**** not yet enabled ****  #**** not yet enabled ****
# Line 2365  if test "x$OPENAD" != x ; then Line 2531  if test "x$OPENAD" != x ; then
2531      OAD_DONT_TRANSFORM="/dev/null"      OAD_DONT_TRANSFORM="/dev/null"
2532      OAD_KEEP_ORIGINAL="/dev/null"      OAD_KEEP_ORIGINAL="/dev/null"
2533      OAD_CB2M_FILES="/dev/null"      OAD_CB2M_FILES="/dev/null"
2534        OADTOOLS="$TOOLSDIR/OAD_support"
2535        test -f "oadtempflile"  &&  \rm -f "oadtempflile"
2536    cat >> "oadtempflile" <<EOF
2537    $OADTOOLS
2538    EOF
2539      echo "  looking for dontCompile file:  "      echo "  looking for dontCompile file:  "
2540      for i in "." $MODS ; do      for i in "." $MODS ; do
2541          if test -r $i"/dontCompile" ; then          if test -r $i"/dontCompile" ; then
# Line 2420  for d in $alldirs ; do Line 2591  for d in $alldirs ; do
2591          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2592              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2593                  ignore_f=f                  ignore_f=f
2594                  case $d/$sf in                  case $d/$sf in
2595                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2596                          ignore_f=t                          ignore_f=t
2597                          ;;                          ;;
2598                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2599                          ignore_f=t                          ignore_f=t
2600                          ;;                          ;;
2601                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2602                          ignore_f=t                          ignore_f=t
2603                          ;;                          ;;
2604                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2605                          ignore_f=t                          ignore_f=t
2606                          ;;                          ;;
2607                    ./EMBEDDED_FILES.h)                    ./EMBEDDED_FILES.h)
2608                          ignore_f=t                          ignore_f=t
2609                          ;;                          ;;
2610                    *)                    *)
2611                          #  For the local directory *ONLY*,                          #  For the local directory *ONLY*,
2612                          #  ignore all soft-links                          #  ignore all soft-links
2613                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
# Line 2446  for d in $alldirs ; do Line 2617  for d in $alldirs ; do
2617                              deplist="$deplist $sf"                              deplist="$deplist $sf"
2618                          fi                          fi
2619                          ;;                          ;;
2620                  esac                  esac
2621                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2622                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2623                      case $extn in                      case $extn in
# Line 2493  for d in $alldirs ; do Line 2664  for d in $alldirs ; do
2664                          echo    " \\"  >> hsrclist.tmp                          echo    " \\"  >> hsrclist.tmp
2665                          printf " $sf" >> hsrclist.tmp                          printf " $sf" >> hsrclist.tmp
2666                          ;;                          ;;
2667                      flow)                      flow)
2668                          echo    " \\"  >> ad_flow_files.tmp                          echo    " \\"  >> ad_flow_files.tmp
2669                          printf " $sf" >> ad_flow_files.tmp                          printf " $sf" >> ad_flow_files.tmp
2670                          ;;                          ;;
# Line 2504  for d in $alldirs ; do Line 2675  for d in $alldirs ; do
2675      done      done
2676      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2677        if test "$d" != "." ; then        if test "$d" != "." ; then
2678          echo "" >> srclinks.tmp          echo "" >> srclinks.tmp
2679          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2680          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2681  # We need to make sure that the link isn't already there.  # We need to make sure that the link isn't already there.
# Line 2525  echo "" >> ad_flow_files.tmp Line 2696  echo "" >> ad_flow_files.tmp
2696  CMDLINE=$0  CMDLINE=$0
2697  for xx in "$@" ; do nw=`echo $xx | wc -w`  for xx in "$@" ; do nw=`echo $xx | wc -w`
2698      if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"      if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2699                          else CMDLINE="$CMDLINE '$xx'" ; fi                          else CMDLINE="$CMDLINE '$xx'" ; fi
2700  done  done
2701    
2702  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
# Line 2559  cat >>$MAKEFILE <<EOF Line 2730  cat >>$MAKEFILE <<EOF
2730  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2731  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2732  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2733  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2734  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2735  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 2574  INCLUDEDIRS = ${INCLUDEDIRS} Line 2743  INCLUDEDIRS = ${INCLUDEDIRS}
2743  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2744  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2745  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2746    OADTOOLS    = ${OADTOOLS}
2747    
2748  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2749  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 2597  fi Line 2767  fi
2767  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2768  # Unix ln (link)  # Unix ln (link)
2769  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2770  # Dependency generator  # Dependency generator
2771  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2772  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 2633  NOOPTFILES = ${NOOPTFILES} Line 2801  NOOPTFILES = ${NOOPTFILES}
2801  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2802  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2803  LIBS = ${LIBS}  LIBS = ${LIBS}
2804  # Name of the Mekfile  # Name of the makefile
2805  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2806    # Name of the make program
2807    MAKE = ${MAKE}
2808    
2809  EOF  EOF
2810    
# Line 2658  echo >> $MAKEFILE Line 2828  echo >> $MAKEFILE
2828  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2829  echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE  echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2830  echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2831  echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE  echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2832  echo >> $MAKEFILE  echo >> $MAKEFILE
2833  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2834  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2835    
2836  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2837    
2838  all: \$(EXECUTABLE)  all: fwd_exe_target
2839    fwd_exe_target:
2840            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2841            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2842            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2843            @-rm -f ad_config.template
2844            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2845    
2846  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2847          @echo Creating \$@ ...          @echo Creating \$@ ...
2848          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2849    
2850  depend:  depend:
2851          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2852          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2853          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2854          -rm -f makedepend.out          -rm -f makedepend.out
2855    
# Line 2681  libmitgcmuv.a: \$(OBJFILES) Line 2859  libmitgcmuv.a: \$(OBJFILES)
2859          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
2860          ar d   libmitgcmuv.a main.o          ar d   libmitgcmuv.a main.o
2861    
2862    obj: \$(OBJFILES)
2863    
2864  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2865    
2866  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
# Line 2689  output.txt: \$(EXECUTABLE) Line 2869  output.txt: \$(EXECUTABLE)
2869          @printf 'running ... '          @printf 'running ... '
2870          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2871    
2872    # remove most of the files that "make" generates
2873  clean:  clean:
2874          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2875          -rm -rf *.o          -rm -rf *.o
2876          -rm -rf *.$FS *.flowdir          -rm -rf *.$FS *.flowdir
2877          -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*          -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2878    
2879    # remove most of the files that "make" and "make depend" generate
2880  Clean:  Clean:
2881          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2882          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2883          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2884          -rm -f make.log run.log f90mkdepend.log *.bak "$MAKEFILE.old"          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2885          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log          -rm -f genmake_warnings genmake_errors make.log
2886    
2887    # remove also the executable, files that "genmake2" generates (except Makefile)
2888    #         and output from a run (plus log files from testreport)
2889  CLEAN:  CLEAN:
2890          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2891          -rm -f genmake_state genmake_*optfile genmake_warnings genmake_errors          -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2892            -rm -f $LOGFILE genmake_state genmake_*optfile
2893            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2894          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2895          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2896          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2897          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime          -rm -f *.txt STD* *diagnostics.log datetime
2898          -rm -f *_MIT_CE_000.opt0000 costfunction*0000          -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2899          -rm -rf mnc_test_*          -rm -rf mnc_test_*
2900    
 #eh3 Makefile: makefile  
2901  makefile:  makefile:
2902          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
2903  cleanlinks:  cleanlinks:
# Line 2719  cleanlinks: Line 2906  cleanlinks:
2906  # Special targets (SPECIAL_FILES) which are created by make  # Special targets (SPECIAL_FILES) which are created by make
2907  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2908          @echo Creating \$@ ...          @echo Creating \$@ ...
2909          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2910  AD_CONFIG.h:  AD_CONFIG.h:
2911          @echo Creating \$@ ...          @echo Creating \$@ ...
2912          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
2913  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
2914          @echo Creating \$@ ...          @echo Creating \$@ ...
2915          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
# Line 2762  cat >>$MAKEFILE <<EOF Line 2949  cat >>$MAKEFILE <<EOF
2949  ## This nullifies any default implicit rules concerning these two file types:  ## This nullifies any default implicit rules concerning these two file types:
2950  ## %.o : %.F  ## %.o : %.F
2951    
2952    # C preprocessing and replacing the _d in constants:
2953    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
2954    
2955  .F.$FS:  .F.$FS:
2956          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
2957  .$FS.o:  .$FS.o:
2958          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2959    .F.o:
2960            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2961  .F90.$FS90:  .F90.$FS90:
2962          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
2963  .FF90.f$FS90:  .FF90.f$FS90:
2964          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
2965  .$FS90.o:  .$FS90.o:
2966          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2967  .f$FS90.o:  .f$FS90.o:
# Line 2778  cat >>$MAKEFILE <<EOF Line 2970  cat >>$MAKEFILE <<EOF
2970  .c.o:  .c.o:
2971          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2972  .flow.flowdir:  .flow.flowdir:
2973          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
2974    
2975  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2976  .F.p:  .F.p:
2977          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
2978  .p.$FS:  .p.$FS:
2979          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2980    
# Line 2829  rm -f adSrcFiles.tmp Line 3021  rm -f adSrcFiles.tmp
3021  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3022    
3023  # ... AD ...  # ... AD ...
3024  adall: \$(EXE_AD)  adall: ad_exe_target
3025  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
3026  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
3027    
3028  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)  ad_exe_target:
3029          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @echo Update AD_CONFIG.h and make \$(EXE_AD)
3030            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3031            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3032            @-rm -f ad_config.template
3033            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3034    
3035    ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3036            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3037          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3038          -rm -f ad_config.template          @-rm -f ad_config.template
3039          @make \$(F77_PP_SRC_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3040          @make \$(FLOFILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3041          cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3042    
3043  ad_taf_output.$FS: ad_input_code.$FS  ad_taf_output.$FS: ad_input_code.$FS
3044          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
# Line 2851  adtafonly: Line 3050  adtafonly:
3050          ls -l ad_input_code_ad.$FS          ls -l ad_input_code_ad.$FS
3051          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3052    
3053  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)  \$(EXE_AD): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ad_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3054          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
3055    
3056  ad_tamc_output.$FS: ad_input_code.$FS  ad_tamc_output.$FS: ad_input_code.$FS
# Line 2867  adonlyfwd: Line 3066  adonlyfwd:
3066  adtrick:  adtrick:
3067          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3068    
3069    adobj: ad_taf_output.o \$(OBJFILES)
3070    
3071  # ... FTL ...  # ... FTL ...
3072  ftlall: ftl_taf  ftlall: ftl_exe_target
3073  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
3074  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
3075    
3076  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)  ftl_exe_target:
3077          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3078          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3079          -rm -f ftl_config.template          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3080          @make \$(F77_PP_SRC_FILES)          @-rm -f ad_config.template
3081          @make \$(AD_FLOW_FILES)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3082          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS  
3083    ftl_input_code.$FS: \$(AD_FILES)
3084            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3085            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3086            @-rm -f ad_config.template
3087            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3088            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3089            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3090    
3091  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_taf_output.$FS: ftl_input_code.$FS
3092          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
# Line 2890  ftltafonly: Line 3098  ftltafonly:
3098          ls -l ftl_input_code_ftl.$FS          ls -l ftl_input_code_ftl.$FS
3099          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3100    
3101  ftl_taf: ftl_taf_output.o \$(OBJFILES)  \$(EXE_FTL): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ftl_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3102          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
3103    
3104  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
3105          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
# Line 2900  ftl_tamc_output.$FS: ftl_input_code.$FS Line 3108  ftl_tamc_output.$FS: ftl_input_code.$FS
3108  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3109          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
3110    
   
3111  # ... SVD ...  # ... SVD ...
3112  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
3113          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
# Line 2921  svd_touch: Line 3128  svd_touch:
3128          touch ad_taf_output.$FS ftl_taf_output.$FS          touch ad_taf_output.$FS ftl_taf_output.$FS
3129          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3130          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3131          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3132          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3133          -rm -f ftl_config.template          @-rm -f ad_config.template
3134    
3135  EOF  EOF
3136    
# Line 2998  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod. Line 3205  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.
3205    
3206  .PHONY: adDepend  .PHONY: adDepend
3207  adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)  adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3208          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3209          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3210          -rm -f makedepend.out          -rm -f makedepend.out
3211    
# Line 3023  f95_test.out: f95_test_mods.f90 f95_test Line 3230  f95_test.out: f95_test_mods.f90 f95_test
3230          f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1          f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3231          f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1          f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3232    
3233  # the file included below is created by the  CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
 # postProcessor and its inclusion sets the  
 # variable POSTPROCESSEDFILES  
 # used below. Because the file is made during  
 # make it won't be read until the second (recursive)  
 # invocation in the rule below  
 -include postProcess.make  
3234    
3235  AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)  AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3236    
3237  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3238    
3239  postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)  \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
 ifeq (\$(MAKELEVEL),0)  
         \$(MAKE) adAll  
 else  
         touch \$@  
 endif  
   
 \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)  
 ifeq (\$(MAKELEVEL),1)  
3240          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
 else  
         touch \$@  
 endif  
   
 # makefile debug rule  
 openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90  
 .PHONY: openad  
3241    
3242  # create the module files  # create sources files modules from header files containing common blocks
3243  %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk  %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3244          ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk          \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3245    
3246  # create the header files  # create new header files with USE statements for the new modules made above
3247  %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk  %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3248          ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)          \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3249    
3250  # change everybody else to use the new module files:  # change the include directives of everybody to refer to  the new header files with the USE statements
3251  %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash  %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3252          ../OAD_support/cb2mUseModules.bash $< ${MPI}          \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3253    
3254  # makefile debug rule  # makefile debug rule
3255  small_f: \$(CB2M_F90_PP_SRC_FILES)  small_f: \$(CB2M_F90_PP_SRC_FILES)
# Line 3076  ad_output.txt: \$(EXE_AD) Line 3262  ad_output.txt: \$(EXE_AD)
3262          @printf 'running ... '          @printf 'running ... '
3263          @./\$(EXE_AD) > \$@          @./\$(EXE_AD) > \$@
3264    
 CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)  
3265  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3266          cat \$^ > \$@          cat \$^ > \$@
3267    
 # strip all comments and blanks to reduce  
 # the file size in order to reduce perl's memory requirements  
 ad_input_code_sf.f$FS90 : ad_input_code.f$FS90  
         cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@  
   
 # mfef90 preprocessing  
 # expand statement functions  
 # expose mfef90 specific substring handling  
 # add the w2f__types module  
 ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90  
         ./mfef90 -r8 -z -F -N132 \$<  
         mv \$<.B \$(basename \$<).B  
         ./whirl2f -openad \$(basename \$<).B  
         cat w2f__types.f90 \$(basename \$<).w2f.f > \$@  
   
3268  # canonicalizer  # canonicalizer
3269  ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py  ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3270          ./preProcess.py --timing --r8 -H -S \$< -o \$@          \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3271    
3272    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3273    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3274            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3275    
3276  # F -> WHIRL  # F -> WHIRL
3277  # note that the canonicalized version cuts off at col 72  ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3278  # doing this also for string constants which is ok as long          \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
 # as we are in fixed mode and cut of exactly there.  
 # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)  
 # characters respectively.  
 ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90  
         ./mfef90 -r8 -z -F \$<  
         mv \$<.B \$@  
3279    
3280  # WHIRL -> XAIF  # WHIRL -> XAIF
3281  ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif  ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3282          ./whirl2xaif -s -n --debug 1 -o \$@ \$<          \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3283    
3284  # XAIF -> XAIF'  # XAIF -> XAIF'
3285  ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver  ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3286          ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r          \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3287    
3288  # XAIF' -> WHIRL'  # XAIF' -> WHIRL'
3289  ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl  ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3290          ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<          \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3291    
3292  # WHIRL' -> F'  # WHIRL' -> F'
3293  ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be  ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3294          ./whirl2f -FLIST:ftn_file=\$@ -openad \$<          \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3295    
3296  # insert template directives  # insert template directives
3297  ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash  ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3298          ../OAD_support/insertTemplateDir.bash \$< \$@          \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3299    
3300  PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F  PPEXTRAS=\$(wildcard \${OADTOOLS}/ad_template.*.F) \${OADTOOLS}/ad_inline.F
3301  # postprocess F'  # postprocess F'
3302  postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)  postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3303          # the target is a placeholder to signal execution of the rule          \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i \${OADTOOLS}/ad_inline.f \$<
3304            # the target is a placeholder to trigger a single execution of the rule
3305          touch \$@          touch \$@
3306          # this step also creates the file postProcess.make but we cannot  # put this so make knows about the postprocessing output
3307          # name it as the target or else make will try to remake it for  OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
         # the include directive above for any rule, e.g. make clean  
         ./postProcess.py --progress --timing --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<  
3308    
3309  # setup some links  # link the XAIF schema files
3310  %.xsd:  %.xsd:
3311          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3312    
 mfef90:  
         \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .  
   
3313  # link the support files:  # link the support files:
3314  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3315          \$(LN) ../OAD_support/\$@ .          \$(LN) \${OADTOOLS}/\$@ .
   
 whirl2xaif xaif2whirl:  
         \$(LN) \${OPENADFORTTK}/bin/\$@ .  
   
 preProcess.py postProcess.py:  
         \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .  
3316    
3317  whirl2f whirl2f_be:  AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag \$(PPEXTRAS:.F=.f)
         \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .  
   
 oadDriver:  
         \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@  
   
 AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)  
3318    
3319  # ============ end OpenAD specific section ==============  # ============ end OpenAD specific section ==============
3320    
# Line 3207  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3359  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3359  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3360    
3361  # Create special header files  # Create special header files
3362  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3363  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3364      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3365  else  else
# Line 3221  else Line 3373  else
3373      fi      fi
3374  fi  fi
3375  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3376      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3377  fi  fi
3378    
   
3379  #  Write the "state" for future records  #  Write the "state" for future records
3380  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3381      printf "" > genmake_state      printf "" > genmake_state
3382      for i in $gm_state ; do      for i in $gm_state ; do
3383          t1="t2=\$$i"          t1="t2=\$$i"
3384          eval $t1          eval $t1
3385          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3386      done      done
3387  fi  fi

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