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revision 1.32 by edhill, Wed Nov 12 22:05:47 2003 UTC revision 1.242 by heimbach, Thu Sep 20 23:12:47 2012 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
173  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
175      cpp_options=$1      cpp_options=$1
176      pkg=$2      pkg=$2
177      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
178      RETVAL=$?      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
179      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
180          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
181          exit 99  }
182      fi  
183      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1  # Search for particular CPP #cmds associated with MPI
184      RETVAL=$?  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
185      if test "x${RETVAL}" = x0 ; then  test_for_mpi_in_cpp_eeoptions() {
186          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"      cpp_options=$1
187          exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
188      fi      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
189      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1  }
190    
191    # Search for particular string in a file. Return 1 if detected, 0 if not
192    # usage: test_for_string_in_file file string
193    test_for_string_in_file() {
194        file=$1
195        strng=$2
196        grep "$strng" $file > /dev/null 2>&1
197      RETVAL=$?      RETVAL=$?
198      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
199          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
200            grep -i "$strng" $file
201          exit 99          exit 99
202      fi      fi
203      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
204  }  }
205    
206  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
207  # the package list.  # the package list.
208  expand_pkg_groups() {  expand_pkg_groups() {
209      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
210      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
211          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
212          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
# Line 54  expand_pkg_groups() { Line 217  expand_pkg_groups() {
217              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
218                  matched=1                  matched=1
219                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
220                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
221                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
222              else              else
223                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
# Line 62  expand_pkg_groups() { Line 225  expand_pkg_groups() {
225          done          done
226          PACKAGES=$new_packages          PACKAGES=$new_packages
227          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
228            return $matched
229      else      else
230          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
231      fi      fi
232  }  }
233    
234  # Guess possible config options for this host  #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
235  find_possible_configs()  {  #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
236    check_for_broken_Ff()  {
237        #  Do we have defaults for $FS and/or $FS90 ?
238        tfs=f
239        tfs9=f90
240        if test "x$FS" != x ; then
241            tfs="$FS"
242        fi
243        if test "x$FS90" != x ; then
244            tfs9="$FS90"
245        fi
246    
247      tmp1=`uname`"_"`uname -m`      #  First check the ability to create a *.F/.f pair.
248      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat <<EOF >> genmake_hello.F
249      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`        program hello
250      PLATFORM=`echo $tmp3 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`        write(*,*) 'hi'
251      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`        stop
252      echo "  The platform appears to be:  $PLATFORM"        end
253  #     if test "x$OFLIST" = x ; then  EOF
254  #       echo "  No pre-defined options files were found matching this platform"      cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
       
     echo "test" > test  
     ln -s ./test link  
255      RETVAL=$?      RETVAL=$?
256      if test "x${RETVAL}" = x0 ; then      if test "x$RETVAL" != x0 ; then
257          LN="ln -s"          if test "x$FS" = x ; then
258                FS='for'
259                FS90='fr9'
260                check_for_broken_Ff
261            else
262                cat <<EOF 2>&1
263    ERROR: Your file system cannot distinguish between *.F and *.f files
264      (fails the "cp" test) and this program cannot find a suitable
265      replacement extension.  Please try a different build environment or
266      contact the <MITgcm-support@mitgcm.org> list for help.
267    
268    EOF
269                exit -1
270            fi
271            return
272        fi
273        rm -f genmake_hello.*
274    
275        #  Check the ability of ${MAKE} and ${LN} to use the current set
276        #  of extensions.
277        cat <<EOF >> genmake_hello.F
278          program hello
279          write(*,*) 'hi'
280          stop
281          end
282    EOF
283        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
284        cat <<EOF >> $MAKEFILE
285    .SUFFIXES:
286    .SUFFIXES: .$tfs .F
287    .F.$tfs:
288            $LN \$< \$@
289    EOF
290        $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
291        RETVAL=$?
292        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
293            if test "x$FS" = x ; then
294                FS='for'
295                FS90='fr9'
296                check_for_broken_Ff
297            else
298                echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
299                echo "       see simple makefile: '$MAKEFILE' (left here)"
300                echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
301                echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
302                echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
303                echo ""
304                exit -1
305                return
306            fi
307        fi
308        rm -f genmake_hello.* $MAKEFILE
309        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
310    
311        #  If we make it here, use the extensions
312        FS=$tfs
313        FS90=$tfs9
314        return
315    }
316    
317    look_for_makedepend()  {
318    
319        #  The "original" makedepend is part of the Imake system that is
320        #  most often distributed with XFree86 or with an XFree86 source
321        #  package.  As a result, many machines (eg. generic Linux) do not
322        #  have a system-default "makedepend" available.  For those
323        #  systems, we have two fall-back options:
324        #
325        #    1) a makedepend implementation shipped with the cyrus-imapd
326        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
327        #
328        #    2) a known-buggy xmakedpend shell script
329        #
330        #  So the choices are, in order:
331        #
332        #    1) use the user-specified program
333        #    2) use a system-wide default
334        #    3) locally build and use the cyrus implementation
335        #    4) fall back to the buggy local xmakedpend script
336        #
337        echo >> $LOGFILE
338        echo "running: look_for_makedepend()" >> $LOGFILE
339        if test "x${MAKEDEPEND}" != x ; then
340            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
341            RETVAL=$?
342            if test x"$RETVAL" = x0 ; then
343                build_cyrus_makedepend
344                RETVAL=$?
345                if test "x$RETVAL" != x0 ; then
346                    echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'"
347                    MAKEDEPEND=
348                fi
349            else
350                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
351                RETVAL=$?
352                if test "x$RETVAL" = x0 ; then
353                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
354                fi
355                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
356            fi
357        fi
358        if test "x${MAKEDEPEND}" = x ; then
359            which makedepend > /dev/null 2>&1
360            RV0=$?
361            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
362            #  echo 'MAKEFILE="'$MAKEFILE'"'
363            cat <<EOF >> $MAKEFILE
364    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
365    #
366    #   Some "makedepend" implementations will die if they cannot
367    #   find a Makefile -- so this file is here to gives them an
368    #   empty one to find and parse.
369    EOF
370            cat <<EOF >> genmake_tc.f
371          program test
372          write(*,*) 'test'
373          stop
374          end
375    EOF
376            makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
377            RV1=$?
378            test -f $MAKEFILE  &&  rm -f $MAKEFILE
379            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
380            if test "x${RV0}${RV1}" = x00 ; then
381                MAKEDEPEND=makedepend
382                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
383            else
384                echo "    system-default makedepend not found. Try to build cyrus-makedepend"
385                #  Try to build the cyrus implementation
386                build_cyrus_makedepend
387                RETVAL=$?
388                if test "x$RETVAL" != x0 ; then
389                    echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend"
390                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
391                    echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392                fi
393            fi
394        fi
395    }
396    
397    build_cyrus_makedepend()  {
398        echo >> $LOGFILE
399        echo "running: build_cyrus_makedepend()" >> $LOGFILE
400        rm -f ./genmake_cy_md
401        (
402            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
403                &&  ./configure > /dev/null 2>&1  \
404                &&  $MAKE > /dev/null 2>&1
405            if test -x ./makedepend.exe ; then
406                $LN ./makedepend.exe ./makedepend
407            fi
408            ./makedepend ifparser.c > /dev/null 2>&1  \
409                &&  echo "true"
410        ) > ./genmake_cy_md
411        grep true ./genmake_cy_md > /dev/null 2>&1
412        RETVAL=$?
413        rm -f ./genmake_cy_md
414        if test "x$RETVAL" = x0 ; then
415            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
416            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
417            return 0
418      else      else
419          echo "Error: \"ln -s\" does not appear to work on this system!"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
420          echo "  For help, please contact <MITgcm-support@mitgcm.org>."          return 1
         exit 1  
421      fi      fi
422      rm -f test link  }
423    
424      if test "x$CPP" = x ; then  build_embed_encode()
425          CPP="cpp -traditional -P"  {
426        printf "  building the embed-encode utility...  "
427        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
428            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
429                echo
430                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
431                echo
432                EMBED_SRC=f
433                return 1
434            fi
435            clist="cc gcc c89 $CC"
436            for ic in $clist ; do
437                comm="$ic -o encode_files encode_files.c"
438                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
439                RETVAL=$?
440                if test "x$RETVAL" = x0 ; then
441                    echo "OK"
442                    return 0
443                fi
444            done
445            echo
446            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
447            echo "      so it has been disabled"
448            echo
449            EMBED_SRC=f
450            return 1
451      fi      fi
452        echo "OK"
453    }
454    
455      # look for possible fortran compilers  #  look for possible C compilers
456      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"  look_for_C_compilers() {
457      p_FC=      echo >> $LOGFILE
458        echo "running: look_for_C_compilers()" >> $LOGFILE
459        rm -f ./genmake_hello.c  ./genmake_hello
460        cat >> genmake_hello.c << EOF
461    #include <stdio.h>
462    int main(int argc, char **argv) {
463      printf("Hello!\n");
464      return 0;
465    }
466    EOF
467        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
468        p_CC=
469      for c in $tmp ; do      for c in $tmp ; do
470          rm -f ./hello.f ./hello          COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
471          cat >> hello.f <<EOF          echo $COMM >> $LOGFILE
472            $COMM >> $LOGFILE 2>&1
473            RETVAL=$?
474            if test "x${RETVAL}" = x0 ; then
475                echo " $c test successful" >> $LOGFILE
476                p_CC="$p_CC $c"
477            fi
478        done
479        rm -f ./genmake_hello.c ./genmake_hello
480        if test "x${p_CC}" = x ; then
481            cat 1>&2 <<EOF
482    
483    Error: No C compilers were found in your path.  Please specify one using:
484    
485        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
486        2) the CC or MITGCM_CC environment variables.
487    
488    EOF
489            exit 1
490        else
491            echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
492            if test "x$CC" = x ; then
493                CC=`echo $p_CC | $AWK '{print $1}'`
494                echo "  Setting C compiler to: "$CC
495            fi
496        fi
497        echo " --> set CC='$CC'" >> $LOGFILE
498    }
499    
500    # Guess possible config options for this host
501    find_possible_optfile()  {
502    
503        echo >> $LOGFILE
504        echo "running: find_possible_optfile()" >> $LOGFILE
505        tmp1=`uname`"_"`uname -m`
506        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
507        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
508        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
509        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
510        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
511        PLATFORM=$tmp3
512        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
513        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
514        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
515    
516        #================================================================
517        #  look for possible FORTRAN compilers
518        echo "  look for possible FORTRAN compilers" >> $LOGFILE
519        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
520        p_FC=
521        rm -f ./genmake_hello.f
522        cat >> genmake_hello.f <<EOF
523        program hello        program hello
524        do i=1,3        do i=1,3
525          print *, 'hello world : ', i          print *, 'hello world : ', i
526        enddo        enddo
527        end        end
528  EOF  EOF
529          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
530            COMM="$f -o genmake_hello genmake_hello.f"
531            echo $COMM >> $LOGFILE
532            $COMM >> $LOGFILE 2>&1
533          RETVAL=$?          RETVAL=$?
534          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
535              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
536                p_FC="$p_FC $f"
537          fi          fi
538      done      done
539      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
540      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
541          cat 1>&2 <<EOF          cat 1>&2 <<EOF
542    
# Line 130  Error: No Fortran compilers were found i Line 544  Error: No Fortran compilers were found i
544    
545      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
546      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
547      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
548    
549  EOF  EOF
550          exit 1          exit 1
551      else      else
552          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
         if test "x$FC" = x ; then  
             FC=`echo $p_FC | $AWK '{print $1}'`  
         fi  
553      fi      fi
554    
555      for i in $p_FC ; do      #  Use the first of the compilers found in the current PATH
556          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i      #  that has a correctly-named optfile
557          if test -r $p_OF ; then      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
558              OPTFILE=$p_OF          for i in $p_FC ; do
559              echo "  The options file:  $p_OF"              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
560              echo "    appears to match so we'll use it."              if test -r $OPTFILE ; then
561              break                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
562                    break
563                fi
564            done
565        fi
566    
567        if test "x$OPTFILE" = x ; then
568            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
569            if test ! -r $OPTFILE ; then
570                 echo "  I looked for the file "$OPTFILE" but did not find it"
571          fi          fi
572      done      fi
573    
574      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
575          cat 1>&2 <<EOF          cat 1>&2 <<EOF
576    
# Line 166  Error: No options file was found in:  $R Line 586  Error: No options file was found in:  $R
586  EOF  EOF
587          exit 1          exit 1
588      fi      fi
       
 #     # look for possible MPI libraries  
 #     mpi_libs=  
 #     mpi_fort=`which mpif77 2>/dev/null`  
 #     RETVAL=$?  
 #     if test "x${RETVAL}" = x0 ; then  
 #       cat >>test.f <<EOF  
 #       PROGRAM HELLO  
 #       DO 10, I=1,10  
 #       PRINT *,'Hello World'  
 #    10 CONTINUE  
 #       STOP  
 #       END  
 # EOF  
 #       eval "$mpi_fort -showme test.f > out"  
 #       RETVAL=$?  
 #       if test "x${RETVAL}" = x0 ; then  
 #           a=`cat out`  
 #           for i in $a ; do  
 #               case $i in  
 #                   -*)  
 #                       mpi_libs="$mpi_libs $i" ;;  
 #               esac  
 #           done  
 #           echo "The MPI libs appear to be:"  
 #           echo "  "$mpi_libs  
 #       fi  
 #       rm -f test.f out  
 #     fi  
   
589  }  }
590    
591  #  Parse the package dependency information  #  Parse the package dependency information
# Line 204  get_pdepend_list()  { Line 594  get_pdepend_list()  {
594      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
595      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
596      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
597          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
598          > ./.pd_tmp          > ./.pd_tmp
599      source ./.pd_tmp      RETVAL=$?
600        if test ! "x${RETVAL}" = x0 ; then
601          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
602          exit 1
603        fi
604        . ./.pd_tmp
605      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
     echo -n "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
     echo  
     echo "Usage: "$0" [OPTIONS]"  
     echo "  where [OPTIONS] can be:"  
     echo  
     echo "    -help | --help | -h | --h"  
     echo "    -nooptfile | --nooptfile"  
     echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"  
     echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
     echo "    -pdepend NAME | --pdepend NAME"  
     echo "      -pdepend=NAME | --pdepend=NAME"  
     echo "    -pdefault NAME | --pdefault NAME"  
     echo "      -pdefault=NAME | --pdefault=NAME"  
     echo "    -make NAME | -m NAME"  
     echo "      --make=NAME | -m=NAME"  
     echo "    -makefile NAME | -mf NAME"  
     echo "      --makefile=NAME | -mf=NAME"  
     echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"  
     echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"  
     echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"  
     echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"  
     echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"  
     echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"  
     echo "    -disable NAME | --disable NAME"  
     echo "      -disable=NAME | --disable=NAME"  
     echo "    -enable NAME | --enable NAME"  
     echo "      -enable=NAME | --enable=NAME"  
     echo "    -standarddirs NAME | --standarddirs NAME"  
     echo "      -standarddirs=NAME | --standarddirs=NAME"  
     echo "    -noopt NAME | --noopt NAME"  
     echo "      -noopt=NAME | --noopt=NAME"  
 #    echo "    -cpp NAME | --cpp NAME"  
 #    echo "      -cpp=NAME | --cpp=NAME"  
     echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"  
     echo "      -fc=NAME | --fc=NAME"  
     echo "    -[no]ieee | --[no]ieee"  
     echo "    -[no]mpi | --[no]mpi"  
     echo "    -[no]jam | --[no]jam"  
     echo  
     echo "  and NAME is a string such as:"  
     echo  
     echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"  
     echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"  
     echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"  
     echo  
     echo "  which, depending upon your shell, may need to be single-quoted"  
     echo "  if it contains spaces, dashes, or other special characters."  
     exit 1  
606  }  }
607    
608  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
609  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
610    
611        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
612        if test ! "x$FC_NAMEMANGLE" = x ; then
613            return 0
614        fi
615        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
616    
617      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
618        
619      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
620  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
621  EOF  EOF
622      $MAKE genmake_test.o > genmake_test.log 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
623        echo ' '$COMM >> $LOGFILE
624        $COMM >> $LOGFILE 2>&1
625      RETVAL=$?      RETVAL=$?
626      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
         cat genmake_test.log >> genmake_errors  
627          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
628          echo          cat <<EOF>> $LOGFILE
629          echo "WARNING: C test compile fails -- please see \"genmake_errors\""  
630          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"   WARNING: C test compile fails
631          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
632     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
633    EOF
634          return 1          return 1
635      fi      fi
636      c_tcall=`nm genmake_test.o | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
637      RETVAL=$?      RETVAL=$?
638      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
639          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
640          echo          cat <<EOF>> $LOGFILE
641          echo "WARNING: The \"nm\" command failed."  
642          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"   WARNING: The "nm" command failed.
643          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
644     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
645    EOF
646          return 1          return 1
647      fi      fi
648      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
649        subroutine tcall( string )        subroutine tcall( string )
650        character*(*) string        character*(*) string
651        call tsub( string )        call tsub( string )
652        end        end
653  EOF  EOF
654      $FC $FFLAGS $DEFINES -c genmake_tcomp.f > genmake_tcomp.log 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
655        echo ' '$COMM >> $LOGFILE
656        $COMM >> $LOGFILE 2>&1
657      RETVAL=$?      RETVAL=$?
658      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
         cat genmake_tcomp.log >> genmake_errors  
659          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
660          echo          cat <<EOF>> $LOGFILE
661          echo "WARNING: FORTRAN test compile fails -- please see \"genmake_errors\""  
662          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
663          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
664     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
665    EOF
666          return 1          return 1
667      fi      fi
668      f_tcall=`nm genmake_tcomp.o | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
669      RETVAL=$?      RETVAL=$?
670      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
671          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
672          echo          cat <<EOF>> $LOGFILE
673          echo "WARNING: The \"nm\" command failed."  
674          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"   WARNING: The "nm" command failed.
675          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
676     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
677    EOF
678          return 1          return 1
679      fi      fi
680    
# Line 341  EOF Line 699  EOF
699    
700      #  cleanup the testing files      #  cleanup the testing files
701      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
702    
703        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
704    }
705    
706    check_HAVE_CLOC()  {
707        echo >> $LOGFILE
708        echo "running: check_HAVE_CLOC()" >> $LOGFILE
709        get_fortran_c_namemangling
710        cat <<EOF > genmake_tc_1.c
711    $FC_NAMEMANGLE
712    #include <stdio.h>
713    #include <stdlib.h>
714    #include <unistd.h>
715    #include <assert.h>
716    #include <sys/time.h>
717    void FC_NAMEMANGLE(cloc) ( double *curtim )
718    {
719     struct timeval tv1;
720     gettimeofday(&tv1 , (void *)NULL );
721     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
722     *curtim = *curtim/1.E6;
723    }
724    EOF
725        COMM="$CC $CFLAGS -c genmake_tc_1.c"
726        echo $COMM >> $LOGFILE
727        $COMM >> $LOGFILE 2>&1
728        RET_C=$?
729        cat <<EOF > genmake_tc_2.$FS
730          program hello
731          REAL*8 wtime
732          external cloc
733          call cloc(wtime)
734          print *," HELLO WORLD", wtime
735          end
736    EOF
737        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
738        echo $COMM >> $LOGFILE
739        $COMM >> $LOGFILE 2>&1
740        RET_F=$?
741        test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
742        RETVAL=$?
743        if test "x$RETVAL" = x0 ; then
744            HAVE_CLOC=t
745        fi
746        rm -f genmake_tc*
747        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
748    }
749    
750    check_HAVE_SIGREG()  {
751        if test ! "x$HAVE_SIGREG" = x ; then
752            return
753        fi
754        echo >> $LOGFILE
755        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
756        get_fortran_c_namemangling
757        cat <<EOF > genmake_tc_1.c
758    $FC_NAMEMANGLE
759    #include <stdlib.h>
760    #include <stdio.h>
761    #include <signal.h>
762    #include <errno.h>
763    #include <ucontext.h>
764    
765    int * ip;
766    
767    static void killhandler(
768        unsigned int sn, siginfo_t  si, struct ucontext *sc )
769    {
770        *ip = *ip + 1;
771        return;
772    }
773    
774    void FC_NAMEMANGLE(sigreg) (int * aip)
775    {
776        struct sigaction s;
777        ip = aip;
778        s.sa_flags = SA_SIGINFO;
779        s.sa_sigaction = (void *)killhandler;
780        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
781            printf("Sigaction returned error = %d\n", errno);
782            exit(0);
783        }
784        return;
785    }
786    EOF
787        COMM="$CC $CFLAGS -c genmake_tc_1.c"
788        echo $COMM >> $LOGFILE
789        $COMM >> $LOGFILE 2>&1
790        RET_C=$?
791        cat <<EOF > genmake_tc_2.$FS
792          program hello
793          integer anint
794          common /iv/ anint
795          external sigreg
796          call sigreg(anint)
797          end
798    EOF
799        cat genmake_tc_2.$FS >> $LOGFILE
800        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
801        echo $COMM >> $LOGFILE
802        $COMM >> $LOGFILE 2>&1
803        RETVAL=$?
804        if test "x$RETVAL" = x0 ; then
805            HAVE_SIGREG=t
806        fi
807        rm -f genmake_tc*
808        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
809  }  }
810    
811    check_HAVE_SETRLSTK()  {
812        if test ! "x$HAVE_SETRLSTK" = x ; then
813            return
814        fi
815        echo >> $LOGFILE
816        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
817        get_fortran_c_namemangling
818        cat <<EOF > genmake_tc_1.c
819    $FC_NAMEMANGLE
820    #include <sys/time.h>
821    #include <sys/resource.h>
822    #include <unistd.h>
823    void FC_NAMEMANGLE(setrlstk) ()
824    {
825        struct rlimit rls;
826        rls.rlim_cur = RLIM_INFINITY;
827        rls.rlim_max = RLIM_INFINITY;
828        setrlimit(RLIMIT_STACK, &rls);
829        return;
830    }
831    EOF
832        COMM="$CC $CFLAGS -c genmake_tc_1.c"
833        echo $COMM >> $LOGFILE
834        $COMM >> $LOGFILE 2>&1
835        RET_C=$?
836        cat <<EOF > genmake_tc_2.$FS
837          program hello
838          external setrlstk
839          call setrlstk()
840          end
841    EOF
842        cat genmake_tc_2.$FS >> $LOGFILE
843        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
844        echo $COMM >> $LOGFILE
845        $COMM >> $LOGFILE 2>&1
846        RETVAL=$?
847        if test "x$RETVAL" = x0 ; then
848            HAVE_SETRLSTK=t
849        fi
850        rm -f genmake_tc*
851        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
852    }
853    
854    check_HAVE_STAT()  {
855        echo >> $LOGFILE
856        echo "running: check_HAVE_STAT()" >> $LOGFILE
857        get_fortran_c_namemangling
858        cat <<EOF > genmake_tc_1.c
859    $FC_NAMEMANGLE
860    #include <stdio.h>
861    #include <stdlib.h>
862    #include <unistd.h>
863    #include <sys/stat.h>
864    #include <sys/types.h>
865    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
866    {
867        char name[512];
868        struct stat astat;
869    
870        name[0] = 'a'; name[1] = '\0';
871        if (! stat(name, &astat))
872            *nbyte = (int)(astat.st_size);
873        else
874            *nbyte = -1;
875    }
876    EOF
877        COMM="$CC $CFLAGS -c genmake_tc_1.c"
878        echo $COMM >> $LOGFILE
879        $COMM >> genmake_tc.log 2>&1
880        RET_C=$?
881        cat <<EOF > genmake_tc_2.$FS
882          program hello
883          integer nbyte
884          call tfsize(nbyte)
885          print *," HELLO WORLD", nbyte
886          end
887    EOF
888        cat genmake_tc_2.$FS >> $LOGFILE
889        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
890        echo $COMM >> $LOGFILE
891        $COMM >> genmake_tc.log 2>&1
892        RETVAL=$?
893        if test "x$RETVAL" = x0 ; then
894            HAVE_STAT=t
895        fi
896        rm -f genmake_tc*
897        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
898    }
899    
900    check_netcdf_libs()  {
901        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
902            return
903        fi
904        echo >> $LOGFILE
905        echo "running: check_netcdf_libs()" >> $LOGFILE
906        cat <<EOF > genmake_tnc.F
907          program fgennc
908    #include "netcdf.inc"
909    EOF
910        if test ! "x$MPI" = x ; then
911            echo '#include "mpif.h"' >> genmake_tnc.F
912        fi
913        cat <<EOF >> genmake_tnc.F
914          integer iret, ncid, xid
915          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
916          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
917          iret = nf_def_dim(ncid, 'X', 11, xid)
918          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
919          iret = nf_close(ncid)
920          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
921          end
922    EOF
923        echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
924        cat genmake_tnc.F >> genmake_tnc.log
925        echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
926        RET_CPP=f
927        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
928        echo "$COMM" >> genmake_tnc.log
929        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
930        if test "x$RET_CPP" = xf ; then
931            echo "  WARNING: CPP failed to pre-process the netcdf test." \
932                >> genmake_tnc.log
933            echo "    Please check that \$INCLUDES is properly set." \
934                >> genmake_tnc.log
935        fi
936        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
937        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
938        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
939            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
940        RET_COMPILE=$?
941        cat genmake_tnc.log >> $LOGFILE
942    
943        #EH3  Remove test program execution for machines that either disallow
944        #EH3  execution or cannot support it (eg. cross-compilers)
945        #EH3
946        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
947        #EH3 RETVAL=$?
948        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
949    
950        if test "x$RET_COMPILE" = x0 ; then
951            HAVE_NETCDF=t
952            echo "check_netcdf: successful" >> $LOGFILE
953        else
954            # try again with "-lnetcdf" added to the libs
955            echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
956            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
957            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
958            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
959            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
960                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
961                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
962            RET_COMPILE=$?
963            echo >> $LOGFILE
964            cat genmake_tnc.log >> $LOGFILE
965            if test "x$RET_COMPILE" = x0 ; then
966                LIBS="$LIBS -lnetcdf"
967                HAVE_NETCDF=t
968                echo "check_netcdf: successful" >> $LOGFILE
969            else
970            # try again with "-lnetcdff" added to the libs
971                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
972                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
973                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
974                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
975                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
976                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
977                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
978                RET_COMPILE=$?
979                echo >> $LOGFILE
980                cat genmake_tnc.log >> $LOGFILE
981                if test "x$RET_COMPILE" = x0 ; then
982                    LIBS="$LIBS -lnetcdff -lnetcdf"
983                    HAVE_NETCDF=t
984                    echo "check_netcdf: successful" >> $LOGFILE
985                fi
986            fi
987        fi
988        rm -f genmake_tnc*
989        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
990    }
991    
992    check_lapack_libs()  {
993        if test ! "x$SKIP_LAPACK_CHECK" = x ; then
994            return
995        fi
996        echo >> $LOGFILE
997        echo "running: check_lapack_libs()" >> $LOGFILE
998        cat <<EOF > genmake_tla.F
999          program fgenla
1000          integer info
1001          integer ipiv( 2 )
1002          double precision ab( 4, 2 ), b( 2 )
1003          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1004          data b / 1., 1. /
1005          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1006          IF (info .NE. 0) write(*,*) 'Error:', info
1007          write(*,*) b
1008          end
1009    EOF
1010        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1011        cat genmake_tla.F >> genmake_tla.log
1012        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1013        RET_CPP=f
1014        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1015        echo "$COMM" >> genmake_tla.log
1016        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1017        if test "x$RET_CPP" = xf ; then
1018            echo "  WARNING: CPP failed to pre-process the lapack test." \
1019                >> genmake_tla.log
1020            echo "    Please check that \$INCLUDES is properly set." \
1021                >> genmake_tla.log
1022        fi
1023        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1024        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1025        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1026            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1027        RET_COMPILE=$?
1028        cat genmake_tla.log >> $LOGFILE
1029    
1030        # test program execution not always possible (see check_netcdf_libs)
1031        #
1032        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1033        #RETVAL=$?
1034        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1035    
1036        if test "x$RET_COMPILE" = x0 ; then
1037            HAVE_LAPACK=t
1038            echo "check_lapack: successful" >> $LOGFILE
1039        else
1040            # try again with "-llapack" added to the libs
1041            echo "==> try again with added '-llapack'" > genmake_tla.log
1042            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1043            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1044            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1045            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1046                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1047                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1048            RET_COMPILE=$?
1049            echo >> $LOGFILE
1050            cat genmake_tla.log >> $LOGFILE
1051            if test "x$RET_COMPILE" = x0 ; then
1052                LIBS="$LIBS -llapack"
1053                HAVE_LAPACK=t
1054                echo "check_lapack: successful" >> $LOGFILE
1055            else
1056            # try again with "-lf77blas -lcblas" added to the libs
1057                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1058                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1059                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1060                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1061                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1062                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1063                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1064                RET_COMPILE=$?
1065                echo >> $LOGFILE
1066                cat genmake_tla.log >> $LOGFILE
1067                if test "x$RET_COMPILE" = x0 ; then
1068                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1069                    HAVE_LAPACK=t
1070                    echo "check_lapack: successful" >> $LOGFILE
1071                else
1072                # try again with "-latlas" added to the libs
1073                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1074                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1075                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1076                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1077                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1078                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1079                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1080                    RET_COMPILE=$?
1081                    echo >> $LOGFILE
1082                    cat genmake_tla.log >> $LOGFILE
1083                    if test "x$RET_COMPILE" = x0 ; then
1084                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1085                        HAVE_LAPACK=t
1086                        echo "check_lapack: successful" >> $LOGFILE
1087                    fi
1088                fi
1089            fi
1090        fi
1091        rm -f genmake_tla*
1092        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1093    }
1094    
1095    
1096    ###############################################################################
1097    #   Sequential part of script starts here
1098    ###############################################################################
1099    
1100  #  Set defaults here  #  Set defaults here
1101  COMMANDL="$0 $@"  COMMANDL="$0 $@"
1102    
# Line 350  PLATFORM= Line 1104  PLATFORM=
1104  LN=  LN=
1105  S64=  S64=
1106  KPP=  KPP=
1107  FC=  #FC=
1108    #CC=gcc
1109    #CPP=
1110  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
1111  DEFINES=  DEFINES=
1112  PACKAGES=  PACKAGES=
1113  ENABLE=  ENABLE=
1114  DISABLE=  DISABLE=
1115  MAKEFILE=  # MAKEFILE=
1116  MAKEDEPEND=  # MAKEDEPEND=
1117  PDEPEND=  PKG_DEPEND=
1118  DUMPSTATE=t  PKG_GROUPS=
1119  PDEFAULT=  DUMPSTATE=f
1120  OPTFILE=  OPTFILE=
1121  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1122  FFLAGS=  FFLAGS=
1123  FOPTIM=  FOPTIM=
1124    FEXTRAFLAGS=
1125    USE_EXTENDED_SRC=
1126    EXTENDED_SRC_FLAG=
1127    GET_FC_VERSION=
1128  CFLAGS=  CFLAGS=
1129  KFLAGS1=  KFLAGS1=
1130  KFLAGS2=  KFLAGS2=
1131    #LDADD=
1132  LIBS=  LIBS=
1133  KPPFILES=  KPPFILES=
1134  NOOPTFILES=  NOOPTFILES=
1135  NOOPTFLAGS=  NOOPTFLAGS=
1136    MPI=
1137    MPIPATH=
1138    OMP=
1139    OMPFLAG=
1140    USE_R4=
1141    TS=
1142    PAPIS=
1143    PCLS=
1144    FOOLAD=
1145    PAPI=
1146    PCL=
1147    HPMT=
1148    GSL=
1149    DEVEL=
1150    HAVE_TEST_L=
1151    
1152  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1153  HAVE_SYSTEM=  HAVE_SYSTEM=
1154  HAVE_FDATE=  HAVE_FDATE=
1155  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1156    HAVE_CLOC=
1157    # HAVE_SETRLSTK=
1158    HAVE_STAT=
1159    HAVE_NETCDF=
1160    HAVE_ETIME=
1161    IGNORE_TIME=
1162    HAVE_LAPACK=
1163    
1164  MODS=  MODS=
1165  TOOLSDIR=  TOOLSDIR=
1166  SOURCEDIRS=  SOURCEDIRS=
1167  INCLUDEDIRS=  INCLUDEDIRS=
1168  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
1169    
1170    #- local config file
1171    gm_local="genmake_local"
1172    
1173    G2ARGS=
1174    BASH=
1175  PWD=`pwd`  PWD=`pwd`
1176  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1177  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1178  THISHOSTNAME=`hostname`  EMBED_SRC=
1179    THISHOST=`hostname`
1180  THISCWD=`pwd`  THISCWD=`pwd`
1181  THISDATE=`date`  THISDATE=`date`
1182    THISUSER=`echo $USER`
1183    THISVER=
1184  MACHINE=`uname -a`  MACHINE=`uname -a`
1185  EXECUTABLE=  EXECUTABLE=
1186  EXEHOOK=  EXEHOOK=
1187  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1188  IEEE=  IEEE=
1189  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1190      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1191  fi  fi
1192    FS=
1193    FS90=
1194    
1195  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1196  AD_OPTFILE=  AD_OPTFILE=
# Line 414  FTL_TAF_FLAGS= Line 1205  FTL_TAF_FLAGS=
1205  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1206  TAMC_EXTRA=  TAMC_EXTRA=
1207    
   
1208  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1209  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1210  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1211    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1212    
1213  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1214  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1215  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1216  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s6="TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1217  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="PWD THISHOST THISUSER THISDATE THISVER MACHINE"
1218  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s8="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK"
1219    
1220  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1221  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1222  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1223  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA"
1224    
1225  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1226  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1227    
1228    cat <<EOF
1229    
1230    GENMAKE :
1231    
1232    A program for GENerating MAKEfiles for the MITgcm project.
1233       For a quick list of options, use "genmake2 -h"
1234    or for more detail see the Developer's HOWTO manual at:
1235       http://mitgcm.org/public/docs.html
1236    
1237    EOF
1238    
1239    LOGFILE="genmake.log"
1240    #- clean-up previous genmake logfiles:
1241    rm -f genmake_state genmake_*optfile $LOGFILE
1242    
 echo  
1243  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         source $i/$gm_local  
         break  
     fi  
 done  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
     echo "using $gm_local"  
     source $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1244    
1245  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1246  #parse_options  #parse_options
1247  ac_prev=  ac_prev=
1248  for ac_option ; do  for ac_option in "$@" ; do
1249    
1250        G2ARGS="$G2ARGS \"$ac_option\""
1251    
1252      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1253      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 474  for ac_option ; do Line 1255  for ac_option ; do
1255          ac_prev=          ac_prev=
1256          continue          continue
1257      fi      fi
1258        
1259      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1260        
1261      case $ac_option in      case $ac_option in
1262            
1263          -help | --help | -h | --h)          -help | --help | -h | --h)
1264              usage ;;              usage ;;
1265            
1266          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1267              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1268          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1269              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1270          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1271              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1272            
1273          -adoptfile | --adoptfile | -ad | --ad)          -adoptfile | --adoptfile | -adof | --adof)
1274              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1275          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1276              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1277            
1278          -pdepend | --pdepend)          -pdepend | --pdepend)
1279              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1280          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1281              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1282            
1283          -pdefault | --pdefault)          -pgroups | --pgroups)
1284              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1285          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1286              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1287            
1288          -make | --make | -m | --m)          -make | --make | -m | --m)
1289              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1290          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1291              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1292            
1293          -makefile | --makefile | -ma | --ma)          -bash | --bash)
1294                ac_prev=BASH ;;
1295            -bash=* | --bash=*)
1296                BASH=$ac_optarg ;;
1297    
1298            -makedepend | --makedepend | -md | --md)
1299                ac_prev=MAKEDEPEND ;;
1300            -makedepend=* | --makedepend=* | -md=* | --md=*)
1301                MAKEDEPEND=$ac_optarg ;;
1302    
1303            -makefile | --makefile | -mf | --mf)
1304              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1305          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1306              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1307            
1308          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1309              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
1310          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
1311              PLATFORM=$ac_optarg ;;              echo
1312                        usage
1313                ;;
1314    
1315          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1316              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1317          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1318              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1319            
1320          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1321              ac_prev=MODS ;;              ac_prev=MODS ;;
1322          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1323              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1324            
1325          -disable | --disable)          -disable | --disable)
1326              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1327          -disable=* | --disable=*)          -disable=* | --disable=*)
1328              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1329            
1330          -enable | --enable)          -enable | --enable)
1331              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1332          -enable=* | --enable=*)          -enable=* | --enable=*)
1333              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1334            
1335          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1336              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1337          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
1338              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
1339    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
1340  #           -cpp | --cpp)  #           -cpp | --cpp)
1341  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1342  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1343  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1344                
1345            -cc | --cc)
1346                ac_prev=CC ;;
1347            -cc=* | --cc=*)
1348                CC=$ac_optarg ;;
1349    
1350          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1351              ac_prev=FC ;;              ac_prev=FC ;;
1352          -fc=* | --fc=*)          -fc=* | --fc=*)
1353              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1354            
1355            -fs | --fs)
1356                ac_prev=FS ;;
1357            -fs=* | --fs=*)
1358                FS=$ac_optarg ;;
1359    
1360            -fs90 | --fs90)
1361                ac_prev=FS90 ;;
1362            -fs90=* | --fs90=*)
1363                FS90=$ac_optarg ;;
1364    
1365            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1366                USE_R4=true ;;
1367    
1368          -ieee | --ieee)          -ieee | --ieee)
1369              IEEE=true ;;              IEEE=true ;;
1370          -noieee | --noieee)          -noieee | --noieee)
1371              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1372                    -devel | --devel)
1373                IEEE=true ; DEVEL=true ;;
1374            -gsl | --gsl)
1375                GSL=true ;;
1376    
1377            -ts | --ts)
1378                TS=true ;;
1379            -papis | --papis)
1380                PAPIS=true ;;
1381            -pcls | --pcls)
1382                PCLS=true ;;
1383            -foolad | --foolad)
1384                FOOLAD=true ;;
1385            -papi | --papi)
1386                PAPI=true ;;
1387            -pcl | --pcl)
1388                PCL=true ;;
1389            -hpmt | --hpmt)
1390                HPMT=true ;;
1391    
1392          -mpi | --mpi)          -mpi | --mpi)
1393              MPI=true ;;              MPI=true ;;
1394          -nompi | --nompi)          -mpi=* | --mpi=*)
1395              MPI= ;;              MPIPATH=$ac_optarg
1396                        MPI=true ;;
1397          -jam | --jam)  
1398              JAM=1 ;;          -omp | --omp)
1399          -nojam | --nojam)              OMP=true ;;
1400              JAM=0 ;;          -omp=* | --omp=*)
1401                        OMPFLAG=$ac_optarg
1402                OMP=true ;;
1403    
1404          -ds | --ds)          -ds | --ds)
1405              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1406            
1407            -extra_flag | --extra_flag)
1408                ac_prev=FEXTRAFLAGS ;;
1409            -extra_flag=* | --extra_flag=*)
1410                FEXTRAFLAGS=$ac_optarg ;;
1411    
1412          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1413              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1414          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 587  for ac_option ; do Line 1419  for ac_option ; do
1419          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1420              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1421    
1422            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1423                IGNORE_TIME="-DIGNORE_TIME" ;;
1424    
1425            -es | --es | -embed-source | --embed-source)
1426                EMBED_SRC=t ;;
1427    
1428          -*)          -*)
1429              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1430              usage              usage
1431              ;;              ;;
1432            
1433          *)          *)
1434              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1435              usage              usage
1436              ;;              ;;
1437            
1438      esac      esac
1439        
1440  done  done
1441    
1442    printf "  getting local config information:  "
1443    if test -f $gm_local ; then
1444        echo "using $gm_local"
1445        . $gm_local
1446    else
1447        echo "none found"
1448    fi
1449    
1450  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1451      echo      echo
1452      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1453      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1454      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1455      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1456        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1457        echo "WARNING: ignore \"./.genmakerc\" and continue."
1458      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1459  fi  fi
1460    
1461    #  Find the MITgcm ${ROOTDIR}
1462  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1463      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1464        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1465          ROOTDIR=".."          ROOTDIR=".."
1466      else      else
1467          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1468              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1469                  ROOTDIR=$d                  ROOTDIR=$d
1470                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1471                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1472                  break                  break
1473              fi              fi
1474          done          done
# Line 638  if test ! -d ${ROOTDIR} ; then Line 1485  if test ! -d ${ROOTDIR} ; then
1485      exit 1      exit 1
1486  fi  fi
1487    
1488  echo "  getting OPTFILE information:  "  #  Find the MITgcm ${THISVER}
1489    version_file="${ROOTDIR}/doc/tag-index"
1490    if test -f $version_file ; then
1491        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1492    #-  remove ./BUILD_INFO.h file if older than version_file
1493        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1494            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1495            rm -f ./BUILD_INFO.h
1496        fi
1497    fi
1498    
1499    if test "x$MAKEFILE" = x ; then
1500        MAKEFILE="Makefile"
1501    fi
1502    
1503    echo "  getting OPTFILE information:"
1504  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1505      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1506          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1507          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1508          find_possible_configs          find_possible_optfile
1509      else      else
1510          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1511      fi      fi
# Line 651  fi Line 1513  fi
1513  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
1514      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1515          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
1516          source "$OPTFILE"          . "$OPTFILE"
1517          RETVAL=$?          RETVAL=$?
1518          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1519              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1520              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1521              exit 1              exit 1
1522          fi          fi
1523          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1524              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1525          fi          fi
1526      else      else
# Line 667  if test "x$OPTFILE" != xNONE ; then Line 1529  if test "x$OPTFILE" != xNONE ; then
1529      fi      fi
1530  fi  fi
1531    
1532  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1533  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1534      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
1535          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
# Line 678  fi Line 1540  fi
1540  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
1541      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1542          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1543          source "$AD_OPTFILE"          . "$AD_OPTFILE"
1544          RETVAL=$?          RETVAL=$?
1545          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1546              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1547              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1548              exit 1              exit 1
1549          fi          fi
1550          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1551              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1552          fi          fi
1553      else      else
# Line 694  if test "x${AD_OPTFILE}" != xNONE ; then Line 1556  if test "x${AD_OPTFILE}" != xNONE ; then
1556      fi      fi
1557  fi  fi
1558    
1559  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  #====================================================================
1560  #  and abort!  #  Set default values if not set by the optfile
1561    #
1562    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1563    #  either set defaults or complain and abort!
1564    if test ! "x$BASH" = x ; then
1565        # add a trailing space so that it works within the Makefile syntax (see below)
1566        BASH="$BASH "
1567    fi
1568  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1569      cat <<EOF 1>&2      cat <<EOF 1>&2
1570    
# Line 706  Error: no Fortran compiler: please speci Line 1575  Error: no Fortran compiler: please speci
1575  EOF  EOF
1576      exit 1      exit 1
1577  fi  fi
1578    if test "x$GET_FC_VERSION" != x ; then
1579      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1580      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1581      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1582      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1583      if test -s genmake_fc_vers1 ; then
1584        cat genmake_fc_vers1 >> $LOGFILE
1585      else
1586        cat genmake_fc_vers2 >> $LOGFILE
1587      fi
1588      echo "<-- compiler version ----" >> $LOGFILE
1589      rm -f genmake_fc_vers1 genmake_fc_vers2
1590    fi
1591    
1592    if test "x$CC" = x ; then
1593        look_for_C_compilers
1594    fi
1595    
1596  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1597      LINK=$FC      LINK=$FC
1598  fi  fi
1599    if test "x$MAKE" = x ; then
1600        MAKE="make"
1601    fi
1602  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1603      CPP="cpp"      CPP="cpp -traditional -P"
1604  fi  fi
1605    #EH3 === UGLY ===
1606    #  The following is an ugly little hack to check for $CPP in /lib/ and
1607    #  it should eventually be replaced with a more general function that
1608    #  searches a combo of the user's path and a list of "usual suspects"
1609    #  to find the correct location for binaries such as $CPP.
1610    for i in " " "/lib/" ; do
1611        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1612    done
1613    #EH3 === UGLY ===
1614  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1615  RETVAL=$?  RETVAL=$?
1616  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 728  EOF Line 1627  EOF
1627  else  else
1628      rm -f test_cpp      rm -f test_cpp
1629  fi  fi
1630  if test "x$MAKEDEPEND" = x ; then  
1631      MAKEDEPEND=makedepend  look_for_makedepend
1632    
1633    #  Check that soft-link command is set and usable
1634    if test "x$LN" = x ; then
1635        LN="ln -s"
1636    fi
1637    echo "test" > genmake_test_ln
1638    $LN genmake_test_ln genmake_tlink
1639    RETVAL=$?
1640    if test "x$RETVAL" != x0 ; then
1641        cat <<EOF 1>&2
1642    
1643    Error: The command "$LN" failed -- please specify a working soft-link
1644      command in the optfile.
1645    
1646    EOF
1647        exit 1
1648    fi
1649    test -L genmake_tlink > /dev/null 2>&1
1650    RETVAL=$?
1651    if test "x$RETVAL" = x0 ; then
1652        HAVE_TEST_L=t
1653  fi  fi
1654    rm -f genmake_test_ln genmake_tlink
1655    
1656    #  Check for broken *.F/*.f handling and fix if possible
1657    check_for_broken_Ff
1658    
1659    if test ! "x$MPI" = x ; then
1660          echo "  Turning on MPI cpp macros"
1661          DEFINES="$DEFINES -DALLOW_USE_MPI"
1662    fi
1663    if test ! "x$OMP" = x ; then
1664          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1665          FFLAGS="$FFLAGS $OMPFLAG"
1666          F90FLAGS="$F90FLAGS $OMPFLAG"
1667          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1668    fi
1669    
1670    if test ! "x$USE_R4" = x ; then
1671          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1672          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1673    fi
1674    
1675    if test ! "x$TS" = x ; then
1676          echo "  Turning on timing per timestep"
1677          if test ! "x$FOOLAD" = x ; then
1678                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1679          else
1680                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1681          fi
1682          PACKAGES="$PACKAGES showflops"
1683    fi
1684    if test ! "x$PAPIS" = x ; then
1685          echo "  Turning on PAPI flop summary per timestep"
1686          echo "  Please make sure PAPIINC, PAPILIB are defined"
1687          if test ! "x$FOOLAD" = x ; then
1688                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1689          else
1690                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1691          fi
1692          INCLUDES="$INCLUDES $PAPIINC"
1693          LIBS="$LIBS $PAPILIB"
1694          PACKAGES="$PACKAGES showflops"
1695    fi
1696    if test ! "x$PCLS" = x ; then
1697          echo "  Turning on PCL counter summary per timestep"
1698          echo "  Please make sure PCLINC, PCLLIB are defined"
1699          if test ! "x$FOOLAD" = x ; then
1700                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1701          else
1702                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1703          fi
1704          INCLUDES="$INCLUDES $PCLINC"
1705          LIBS="$LIBS $PCLLIB"
1706          PACKAGES="$PACKAGES showflops"
1707    fi
1708    if test ! "x$PAPI" = x ; then
1709          if test ! "x$PAPIS" = x ; then
1710              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1711              echo "  Sticking with PAPI flop summary per timestep!"
1712          else
1713              echo "  Turning on performance analysis with PAPI"
1714              echo "  Please make sure PAPIINC, PAPILIB are defined"
1715              DEFINES="$DEFINES -DUSE_PAPI"
1716              INCLUDES="$INCLUDES $PAPIINC"
1717              LIBS="$LIBS $PAPILIB"
1718          fi
1719    fi
1720    if test ! "x$PCL" = x ; then
1721          if test ! "x$PCLS" = x ; then
1722              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1723              echo "  Sticking with PCL flop summary per timestep!"
1724          else
1725              echo "  Turning on performance analysis with PCL"
1726              echo "  Please make sure PCLINC, PCLLIB are defined"
1727              DEFINES="$DEFINES -DUSE_PCL"
1728              INCLUDES="$INCLUDES $PCLINC"
1729              LIBS="$LIBS $PCLLIB"
1730          fi
1731    fi
1732    if test ! "x$HPMT" = x ; then
1733          if test ! "x$PAPI" = x ; then
1734              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1735              echo "  Sticking with PAPI!"
1736          else
1737            if test ! "x$PCL" = x ; then
1738              echo "  PCL and the HPM Toolkit cannot co-exist!"
1739              echo "  Sticking with PCL!"
1740            else
1741              echo "  Turning on performance analysis with the HPM Toolkit"
1742              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1743              DEFINES="$DEFINES -DUSE_LIBHPM"
1744              INCLUDES="$INCLUDES $HPMTINC"
1745              LIBS="$LIBS $HPMTLIB"
1746            fi
1747          fi
1748    fi
1749    if test ! "x$GSL" = x ; then
1750          echo "  Turning on use of GSL to control floating point calculations"
1751          echo "  Please make sure GSLINC, GSLLIB are defined"
1752          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1753          INCLUDES="$INCLUDES $GSLINC"
1754          LIBS="$LIBS $GSLLIB"
1755    fi
1756    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1757    if test ! "x$USE_EXTENDED_SRC" = x ; then
1758          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1759          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1760    fi
1761    
1762  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1763  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1764  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1765        program hello        program hello
1766        call system('echo hi')        call system('echo hi')
1767        end        end
1768  EOF  EOF
1769  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1770  RETVAL=$?  RETVAL=$?
1771  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1772      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 752  else Line 1778  else
1778  fi  fi
1779  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1780    
1781  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1782  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1783        program hello        program hello
1784        CHARACTER(128) string        CHARACTER*(128) string
1785        string = ' '        string = ' '
1786        call fdate( string )        call fdate( string )
1787        print *, string        print *, string
1788        end        end
1789  EOF  EOF
1790  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1791  RETVAL=$?  RETVAL=$?
1792  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1793      HAVE_FDATE=t      HAVE_FDATE=t
# Line 773  else Line 1799  else
1799  fi  fi
1800  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1801    
1802  echo "  The name mangling convention for $FC is...  "  printf "  Do we have the etime() command using $FC...  "
1803  #FC_NAMEMANGLE="#define FC_NAMEMANGLE(X) X ## _"  cat > genmake_tcomp.$FS <<EOF
1804  if test "x$FC_NAMEMANGLE" = x ; then        program hello
1805      get_fortran_c_namemangling        REAL*4 ACTUAL, TARRAY(2)
1806  fi        EXTERNAL ETIME
1807  echo "    '$FC_NAMEMANGLE'"        REAL*4 ETIME
1808  echo "$FC_NAMEMANGLE" > FC_NAMEMANGLE.h.template        actual = etime( tarray )
1809  cmp FC_NAMEMANGLE.h FC_NAMEMANGLE.h.template > /dev/null 2>&1        print *, tarray
1810          end
1811    EOF
1812    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1813  RETVAL=$?  RETVAL=$?
1814  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" = x0 ; then
1815      mv -f FC_NAMEMANGLE.h.template FC_NAMEMANGLE.h      HAVE_ETIME=t
1816        DEFINES="$DEFINES -DHAVE_ETIME"
1817        echo "yes"
1818    else
1819        HAVE_ETIME=
1820        echo "no"
1821    fi
1822    rm -f genmake_tcomp*
1823    
1824    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1825    check_HAVE_CLOC
1826    if test "x$HAVE_CLOC" != x ; then
1827        DEFINES="$DEFINES -DHAVE_CLOC"
1828        echo "yes"
1829    else
1830        echo "no"
1831        if test "x$EMBED_SRC" = xt ; then
1832            echo "    WARNING: you requested file embedding but it has"
1833            echo "      been disabled since C code cannot be called"
1834            EMBED_SRC=
1835        fi
1836    fi
1837    rm -f genmake_t*
1838    
1839    printf "  Can we unlimit the stack size using $FC...  "
1840    check_HAVE_SETRLSTK
1841    if test "x$HAVE_SETRLSTK" = xt ; then
1842        DEFINES="$DEFINES -DHAVE_SETRLSTK"
1843        echo "yes"
1844    else
1845        echo "no"
1846  fi  fi
1847    rm -f genmake_t*
1848    
1849    printf "  Can we register a signal handler using $FC...  "
1850    check_HAVE_SIGREG
1851    if test "x$HAVE_SIGREG" = xt ; then
1852        DEFINES="$DEFINES -DHAVE_SIGREG"
1853        echo "yes"
1854    else
1855        echo "no"
1856    fi
1857    rm -f genmake_t*
1858    
1859    printf "  Can we use stat() through C calls...  "
1860    check_HAVE_STAT
1861    if test "x$HAVE_STAT" != x ; then
1862        DEFINES="$DEFINES -DHAVE_STAT"
1863        echo "yes"
1864    else
1865        echo "no"
1866    fi
1867    rm -f genmake_t*
1868    
1869    printf "  Can we create NetCDF-enabled binaries...  "
1870    check_netcdf_libs
1871    if test "x$HAVE_NETCDF" != x ; then
1872        DEFINES="$DEFINES -DHAVE_NETCDF"
1873        echo "yes"
1874    else
1875        echo "no"
1876    fi
1877    
1878    printf "  Can we create LAPACK-enabled binaries...  "
1879    check_lapack_libs
1880    if test "x$HAVE_LAPACK" != x ; then
1881        DEFINES="$DEFINES -DHAVE_LAPACK"
1882        echo "yes"
1883    else
1884        echo "no"
1885    fi
1886    DEFINES="$DEFINES $IGNORE_TIME"
1887    
1888    if test "x$EMBED_SRC" = xt ; then
1889        build_embed_encode
1890    fi
1891    if test "x$EMBED_SRC" = xt ; then
1892        ENABLE="$ENABLE embed_files"
1893    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
1894    fi
1895    
1896  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1897  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1898  for d in $MODS ; do  for d in $MODS ; do
1899      if test ! -d $d ; then      if test ! -d $d ; then
1900          echo          echo
1901          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1902          exit 1          exit 1
1903      else      else
1904          echo -n " $d"          printf "$d "
1905          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1906          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1907      fi      fi
1908  done  done
1909  echo  echo
1910    
1911  if test "x$MAKEFILE" = x ; then  #if test "x${PLATFORM}" = x ; then
1912      MAKEFILE="Makefile"  #    PLATFORM=$p_PLATFORM
1913  fi  #fi
 if test "x${PLATFORM}" = x ; then  
     PLATFORM=$p_PLATFORM  
 fi  
1914    
1915  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1916      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1917        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1918          EXEDIR=../exe          EXEDIR=../exe
1919      else      else
1920          EXEDIR=.          EXEDIR=.
# Line 825  if test "x${TOOLSDIR}" = x ; then Line 1929  if test "x${TOOLSDIR}" = x ; then
1929      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1930  fi  fi
1931  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1932      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1933      exit 1      exit 1
1934  fi  fi
1935  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1936      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1937        RETVAL=$?
1938        if test "x${RETVAL}" = x0 ; then
1939            S64='$(TOOLSDIR)/set64bitConst.sh'
1940        else
1941            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1942            RETVAL=$?
1943            if test "x${RETVAL}" = x0 ; then
1944                S64='$(TOOLSDIR)/set64bitConst.csh'
1945            else
1946                cat <<EOF
1947    
1948    ERROR: neither of the two default scripts:
1949    
1950        ${TOOLSDIR}/set64bitConst.sh
1951        ${TOOLSDIR}/set64bitConst.csh
1952    
1953      are working so please check paths or specify (with \$S64) a
1954      working version of this script.
1955    
1956    EOF
1957                exit 1
1958            fi
1959        fi
1960  fi  fi
1961    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1962    
1963  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1964    
1965    #  Set Standard Code Directories:
1966    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1967        STANDARDDIRS="eesupp model"
1968    fi
1969    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
1970    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
1971    ckM=$?
1972    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
1973    ckE=$?
1974    if test $ckM = 0 -a $ckE = 1 ; then
1975        STANDARDDIRS="$STANDARDDIRS eesupp"
1976    fi
1977    
1978  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
1979  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
1980  #  they appear as regular source code  #  they appear as regular source code
1981  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1982      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1983      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
1984        ) > make_eesupp.errors 2>&1
1985      RETVAL=$?      RETVAL=$?
1986      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1987          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1988      else      else
1989          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1990          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1991          exit 1          exit 1
1992      fi      fi
1993  fi  fi
1994    
1995    #same for pkg/exch2 and pkg/regrid
1996    for pdir in exch2 regrid ; do
1997        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1998            echo "  Making source files in pkg/${pdir} from templates"
1999            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2000            ) > make_${pdir}.errors 2>&1
2001            RETVAL=$?
2002            if test "x${RETVAL}" = x0 ; then
2003                rm -f make_${pdir}.errors
2004            else
2005                echo "Error: problem encountered while building source files in pkg/${pdir}:"
2006                cat make_${pdir}.errors 1>&2
2007                exit 1
2008            fi
2009        fi
2010    done
2011    
2012  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2013  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2014      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2015      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2016          PDEPEND=$tmp  fi
2017      else  if  test "x${PKG_DEPEND}" = x ; then
2018          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2019          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2020  else  else
2021      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2022          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2023          exit 1          exit 1
2024      fi      fi
2025        echo "  getting package dependency info from  $PKG_DEPEND"
2026    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2027        get_pdepend_list $PKG_DEPEND
2028  fi  fi
2029  echo "  getting package dependency info from  $PDEPEND"  
2030  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2031  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2032  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2033      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2034      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2035  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2036  if test ! "x${RETVAL}" = x0 ; then  fi
2037      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2038      exit 1          echo "Warning:  No package groups information was specified."
2039            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2040    else
2041        if test ! -r ${PKG_GROUPS} ; then
2042            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2043            exit 1
2044        fi
2045        echo "  getting package groups info from      $PKG_GROUPS"
2046  fi  fi
 source ./.pd_tmp  
 rm -f ./.pd_tmp  
2047    
2048  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2049  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2050  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2051  echo  -n "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2052      for i in "." $MODS ; do      for i in "." $MODS ; do
2053          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2054                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2055                  break                  break
2056          fi          fi
2057      done      done
2058  fi  fi
2059  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2060      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2061  fi      if test "x${PKG_GROUPS}" = x ; then
2062  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2063      echo "default packages file disabled"          exit 1
2064        fi
2065  else  else
2066      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2067          echo ""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2068          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          exit 1
2069      else      else
2070          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2071          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2072          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2073          RETVAL=$?          RETVAL=$?
2074          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2075              echo -n "Error: can't parse default package list "              printf "Error: can't parse package list "
2076              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2077              exit 1              exit 1
2078          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         expand_pkg_groups  
         echo "    after group expansion packages are:  $PACKAGES"  
2079      fi      fi
2080  fi  fi
2081    for i in $pkg_list ; do
2082        PACKAGES="$PACKAGES $i"
2083    done
2084    echo     "    before group expansion packages are:$PACKAGES"
2085    if test "x${PKG_GROUPS}" != x ; then
2086        RET=1
2087        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2088        echo "    after group expansion packages are: $PACKAGES"
2089    fi
2090    
2091  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2092    echo "" > ./.tmp_pack
2093    for i in $PACKAGES ; do
2094        echo $i >> ./.tmp_pack
2095    done
2096    for i in `grep  "-" ./.tmp_pack` ; do
2097        j=`echo $i | sed 's/[-]//'`
2098        DISABLE="$DISABLE $j"
2099    done
2100  pack=  pack=
2101  for p in $PACKAGES ; do  for p in $PACKAGES ; do
2102      addit="t"      addit="t"
# Line 936  PACKAGES="$pack" Line 2113  PACKAGES="$pack"
2113  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2114  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
2115  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2116    # Test if each explicitly referenced package exists
2117  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2118      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
2119          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""      if test ! -d "$ROOTDIR/pkg/$j" ; then
2120            echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2121          exit 1          exit 1
2122      fi      fi
2123      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2124  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
2125  PACKAGES=  PACKAGES=
2126  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
2127      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2128  done  done
2129  echo "    packages are:  $PACKAGES"  rm -f ./.tmp_pack
2130    echo "    packages are: $PACKAGES"
2131    
2132    #  Check for package MNC: if NetCDF is available, then build the MNC
2133    #  template files ; otherwise, delete mnc from the list of packages.
2134    echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2135    mnc_in=$?
2136    if test "x$HAVE_NETCDF" != xt ; then
2137        if test "x$mnc_in" = x0 ; then
2138            cat <<EOF
2139    *********************************************************************
2140    WARNING: the "mnc" package was enabled but tests failed to compile
2141      NetCDF applications.  Please check that:
2142    
2143      1) NetCDF is correctly installed for this compiler and
2144      2) the LIBS variable (within the "optfile") specifies the correct
2145           NetCDF library to link against.
2146    
2147      Due to this failure, the "mnc" package is now DISABLED.
2148    *********************************************************************
2149    EOF
2150            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2151            DISABLE="$DISABLE mnc"
2152        else
2153        #  this prevent to add mnc (due to pdepend rules) if not available
2154            DISABLE="$DISABLE mnc"
2155        fi
2156    else
2157        # we have NetCDF, we try to build MNC template files
2158        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2159        RETVAL=$?
2160        if test "x${RETVAL}" = x0 ; then
2161            rm -f make_mnc.errors
2162        else
2163            echo "Error: problem encountered while building source files in pkg/mnc:"
2164            cat make_mnc.errors 1>&2
2165            if test "x$mnc_in" = x0 ; then
2166                exit 1
2167            else
2168                DISABLE="$DISABLE mnc"
2169            fi
2170        fi
2171    fi
2172    
2173    #  Check for package PROFILES: if NetCDF is not available,
2174    #  then delete profiles from the list of available packages.
2175    if test "x$HAVE_NETCDF" != xt ; then
2176        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2177        RETVAL=$?
2178        if test "x$RETVAL" = x0 ; then
2179            cat <<EOF
2180    *********************************************************************
2181    WARNING: the "profiles" package was enabled but tests failed to
2182      compile NetCDF applications.  Please check that:
2183    
2184      1) NetCDF is correctly installed for this compiler and
2185      2) the LIBS variable (within the "optfile") specifies the correct
2186           NetCDF library to link against.
2187    
2188      Due to this failure, the "profiles" package is now DISABLED.
2189    *********************************************************************
2190    EOF
2191            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2192            DISABLE="$DISABLE profiles"
2193        else
2194        #  this prevent to add profiles (due to pdepend rules) if not available
2195            DISABLE="$DISABLE profiles"
2196        fi
2197    fi
2198    
2199    #  Check for package RADTRANS: if LAPACK is not available,
2200    #  then issue a warning that the direct radtrans solver is not available.
2201    if test "x$HAVE_LAPACK" != xt ; then
2202        echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1
2203        RETVAL=$?
2204        if test "x$RETVAL" = x0 ; then
2205            cat <<EOF
2206    *********************************************************************
2207    WARNING: the "radtrans" package was enabled but tests failed to
2208      compile LAPACK applications.  This means that the direct radtrans
2209      solver is not available and compilation will fail if it is enabled.
2210      If you want to use the direct solver, please check that:
2211    
2212      1) LAPACK is correctly installed for this compiler and
2213      2) the LIBS variable (within the "optfile") specifies the correct
2214         LAPACK library to link against.
2215    *********************************************************************
2216    EOF
2217        fi
2218    fi
2219    
2220  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2221  ck=    echo "  applying package dependency rules"
2222  while test "x$ck" != xtt ; do    ck=
2223      while test "x$ck" != xtt ; do
2224      i=0      i=0
2225      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2226      rtot=$nname      rtot=$nname
2227      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2228    
2229          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2230          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 969  while test "x$ck" != xtt ; do Line 2236  while test "x$ck" != xtt ; do
2236                  pin="t"                  pin="t"
2237              fi              fi
2238          done          done
2239            #  or in the current $STANDARDDIRS list?
2240            for p in $STANDARDDIRS ; do
2241                if test "x$p" = "x$pname" ; then pin="t" ; fi
2242            done
2243    
2244          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2245          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 991  while test "x$ck" != xtt ; do Line 2262  while test "x$ck" != xtt ; do
2262    
2263          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2264          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2265                #echo "   " $pname ": need to add :" $dname
2266              in_dis="f"              in_dis="f"
2267              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2268                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1011  while test "x$ck" != xtt ; do Line 2283  while test "x$ck" != xtt ; do
2283          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2284          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2285              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2286              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2287              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2288              exit 1              exit 1
2289          fi          fi
2290          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2291            #i=$(( $i + 1 ))
2292      done      done
2293      ck=$ck"t"      ck=$ck"t"
2294  done    done
2295  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2296    fi
2297  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2298      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2299      if test -d $adr ; then      if test -d $adr ; then
# Line 1034  for i in $PACKAGES ; do Line 2308  for i in $PACKAGES ; do
2308      fi      fi
2309  done  done
2310    
   
2311  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2312  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2313  cat <<EOF >$PACKAGES_DOT_H".tmp"  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2314  C=== GENMAKE v2 ===  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
   
 C  Packages disabled by genmake:  
 EOF  
 #  The following UGLY HACK sets multiple "#undef"s and it needs to go  
 #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  
2315  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2316  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2317  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2318  all_pack=  all_pack=
2319    DISABLED_PACKAGES=
2320  for n in $names ; do  for n in $names ; do
2321      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2322          has_pack="f"          has_pack="f"
# Line 1065  for n in $names ; do Line 2327  for n in $names ; do
2327              fi              fi
2328          done          done
2329          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2330              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2331              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2332          fi          fi
2333      fi      fi
2334  done  done
2335  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2336  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2337      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2338      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2339  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2340    
2341  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2342      case $i in      case $i in
2343          aim_v23)          aim_v23)
2344              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2345              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
2346              ;;              ;;
2347      esac      esac
2348  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2349    
2350  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
2351    
2352  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2353  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2354  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" != x ; then
2355      STANDARDDIRS="eesupp model"      for d in $STANDARDDIRS ; do
2356            adr="$ROOTDIR/$d/src"
2357            if test ! -d $adr ; then
2358                echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2359                echo "  is correct and that you correctly specified the STANDARDDIRS option"
2360                exit 1
2361            else
2362                SOURCEDIRS="$SOURCEDIRS $adr"
2363            fi
2364            adr="$ROOTDIR/$d/inc"
2365            if test ! -d $adr ; then
2366                echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2367                echo "  is correct and that you correctly specified the STANDARDDIRS option"
2368                exit 1
2369            else
2370                INCLUDEDIRS="$INCLUDEDIRS $adr"
2371            fi
2372        done
2373  fi  fi
 for d in $STANDARDDIRS ; do  
     adr="$ROOTDIR/$d/src"  
     if test ! -d $adr ; then  
         echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""  
         echo "  is correct and that you correctly specified the STANDARDDIRS option"  
         exit 1  
     else  
         SOURCEDIRS="$SOURCEDIRS $adr"  
     fi  
     adr="$ROOTDIR/$d/inc"  
     if test ! -d $adr ; then  
         echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""  
         echo "  is correct and that you correctly specified the STANDARDDIRS option"  
         exit 1  
     else  
         INCLUDEDIRS="$INCLUDEDIRS $adr"  
     fi  
 done  
2374    
2375  echo "  Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2376  echo "    of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
2377  CPP_OPTIONS=  CPP_OPTIONS=
2378    CPP_EEOPTIONS=
2379  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
2380    names=`ls -1 "$ROOTDIR/pkg"`
2381  for i in $spaths ; do  for i in $spaths ; do
2382      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
2383      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
2384          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2385          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2386          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2387            for n in $names ; do
2388                test_for_package_in_cpp_options $CPP_OPTIONS $n
2389            done
2390        fi
2391        try="$i/CPP_EEOPTIONS.h"
2392        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2393            echo "    found CPP_EEOPTIONS=\"$try\""
2394            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2395    #**** not yet enabled ****
2396    #        test_for_mpi_in_cpp_eeoptions $try
2397    #**** not yet enabled ****
2398            CPP_EEOPTIONS="$try"
2399      fi      fi
2400  done  done
2401  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
2402      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2403      exit 1      exit 1
2404  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
2405    
2406  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2407  #  compiler.  #  compiler.
2408  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2409      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2410  fi  fi
2411  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2412    touch adSrcFiles.tmp
2413  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2414      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2415      for j in $list_files ; do      for j in $list_files ; do
2416          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2417      done      done
2418  done  done
2419    if test ! "x"$FS = "x.f" ; then
2420  cat <<EOF > adjoint_sed      cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2421  s/call adopen(/call adopen ( mythid,\\      mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2422       \&           /g  fi
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
2423    
2424  echo  echo
2425  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2426  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2427  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2428      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2429          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2430      fi      fi
2431  done  done
2432    
2433    if test ! "x$DIVA" = x ; then
2434        echo "  Creating the pseudo-MPI include directory"
2435        INCLUDES="-I./mpi_headers $INCLUDES"
2436        rm -rf ./mpi_headers
2437        mkdir -p ./mpi_headers
2438    
2439        if test "x$MPIINCLUDEDIR" = x ; then
2440            if test "x$MPIHOME" = x ; then
2441                MPIHOME='/usr'
2442            fi
2443            MPIINCLUDEDIR='$MPIHOME/include'
2444        fi
2445    
2446        if test -r $MPIINCLUDEDIR/mpif.h ; then
2447            for i in $MPI_HEADER_FILES; do
2448                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2449            done
2450    
2451            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2452        else
2453            echo " We cannot create a copy of mpif.h!"
2454    #       exit -1
2455        fi
2456    fi
2457    
2458  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2459  rm -rf .links.tmp  rm -rf .links.tmp
2460  mkdir .links.tmp  mkdir .links.tmp
2461    touch .links.tmp/foo
2462    if test ! -r ".links.tmp/foo" ; then
2463        echo
2464        echo "ERROR : something is wrong with your directory permissions or"
2465        echo "   your user file-creation mask (\"umask\") since creating a"
2466        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2467        echo "   not working.  Please try setting your umask to something"
2468        echo "   sane such as:"
2469        echo
2470        echo "      umask 0002"
2471        echo
2472        echo "   and please verify that you have the proper permissions for"
2473        echo "   creating sub-directories and then reading files created"
2474        echo "   within them."
2475        echo
2476        exit 1
2477    fi
2478    rm -f .links.tmp/foo
2479    
2480    if test "x$OPENAD" != x ; then
2481        OAD_DONT_COMPILE="/dev/null"
2482        OAD_DONT_TRANSFORM="/dev/null"
2483        OAD_KEEP_ORIGINAL="/dev/null"
2484        OAD_CB2M_FILES="/dev/null"
2485        OADTOOLS="$TOOLSDIR/OAD_support"
2486        test -f "oadtempflile"  &&  \rm -f "oadtempflile"
2487    cat >> "oadtempflile" <<EOF
2488    $OADTOOLS
2489    EOF
2490        echo "  looking for dontCompile file:  "
2491        for i in "." $MODS ; do
2492            if test -r $i"/dontCompile" ; then
2493                OAD_DONT_COMPILE=$i"/dontCompile"
2494                echo "     found $OAD_DONT_COMPILE"
2495                break
2496            fi
2497        done
2498        echo "  looking for dontTransform file:  "
2499        for i in "." $MODS ; do
2500            if test -r $i"/dontTransform" ; then
2501                OAD_DONT_TRANSFORM=$i"/dontTransform"
2502                echo "     found $OAD_DONT_TRANSFORM"
2503                break
2504            fi
2505        done
2506        echo "  looking for keepOriginal file:  "
2507        for i in "." $MODS ; do
2508            if test -r $i"/keepOriginal" ; then
2509                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2510                echo "     found $OAD_KEEP_ORIGINAL"
2511                break
2512            fi
2513        done
2514        echo "  looking for cb2mFiles:  "
2515        for i in "." $MODS ; do
2516            if test -r $i"/cb2mFiles" ; then
2517                OAD_CB2M_FILES=$i"/cb2mFiles"
2518                echo "     found $OAD_CB2M_FILES"
2519                break
2520            fi
2521        done
2522        echo "   OpenAD exceptions:  "
2523    fi
2524    
2525  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2526  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2527  echo -n 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2528  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2529  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2530  echo -n 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2531  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2532    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2533  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2534  for d in $alldirs ; do  for d in $alldirs ; do
2535      deplist=      deplist=
2536      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2537      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2538        if test "x$OPENAD" != x ; then
2539            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2540        fi
2541      for sf in $sfiles ; do      for sf in $sfiles ; do
2542          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2543              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2544                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  ignore_f=f
2545                  touch .links.tmp/$sf                  case $d/$sf in
2546                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2547                  case $extn in                          ignore_f=t
2548                      F)                          ;;
2549                          echo    " \\"  >> srclist.inc                    ./AD_CONFIG.h)
2550                          echo -n " $sf" >> srclist.inc                          ignore_f=t
2551                            ;;
2552                      ./FC_NAMEMANGLE.h)
2553                            ignore_f=t
2554                            ;;
2555                      ./BUILD_INFO.h)
2556                            ignore_f=t
2557                            ;;
2558                      ./EMBEDDED_FILES.h)
2559                            ignore_f=t
2560                            ;;
2561                      *)
2562                            #  For the local directory *ONLY*,
2563                            #  ignore all soft-links
2564                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2565                                ignore_f=t
2566                            else
2567                                touch .links.tmp/$sf
2568                                deplist="$deplist $sf"
2569                            fi
2570                            ;;
2571                    esac
2572                    if test "x$ignore_f" = xf ; then
2573                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2574                        case $extn in
2575                          F)
2576                            echo    " \\"  >> F77srclist.tmp
2577                            printf " $sf" >> F77srclist.tmp
2578                            if test "x$OPENAD" != x ; then
2579                                basename=${sf%%.F}
2580                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2581                                if test -z "$isAD" ; then
2582                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2583                                    if test -z "$toBeIgnored" ; then
2584                                        echo    " \\"  >> nonADF77srclist.tmp
2585                                        printf " $sf" >> nonADF77srclist.tmp
2586                                    else
2587                                        echo "    not to be compiled   :  $sf"
2588                                    fi
2589                                else # file is initially listed as an AD file we want to exclude it
2590                                     # or we want to retain the untransformed version
2591                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2592                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2593                                    if test -n "$notToBeTransformed"; then
2594                                        echo "    not to be transformed:  $sf"
2595                                    fi
2596                                    if test -n "$untransformedVersionToBeKept" ; then
2597                                        echo "    original to be kept  :  $sf"
2598                                    fi
2599                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2600                                        echo    " \\"  >> nonADF77srclist.tmp
2601                                        printf " $sf" >> nonADF77srclist.tmp
2602                                    fi
2603                                fi
2604                            fi
2605                          ;;                          ;;
2606                      F90)                      F90)
2607                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2608                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2609                          ;;                          ;;
2610                      c)                      c)
2611                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2612                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2613                          ;;                          ;;
2614                      h)                      h)
2615                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2616                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2617                          ;;                          ;;
2618                      flow)                      flow)
2619                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.tmp
2620                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.tmp
2621                          ;;                          ;;
2622                  esac                     esac
2623                    fi
2624              fi              fi
2625          fi          fi
2626      done      done
2627      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2628          if test "$d" != "." ; then
2629          echo "" >> srclinks.tmp          echo "" >> srclinks.tmp
2630          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2631          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2632          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2633    # This may happen when make thinks that a header file has to be "remade"
2634    # because a module it depends on has changed.  In this case we do nothing.
2635            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2636          fi
2637      fi      fi
2638  done  done
2639  rm -rf .links.tmp  rm -rf .links.tmp
2640  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2641  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2642  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2643  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2644  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2645    echo "" >> ad_flow_files.tmp
2646    
2647    CMDLINE=$0
2648    for xx in "$@" ; do nw=`echo $xx | wc -w`
2649        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2650                            else CMDLINE="$CMDLINE '$xx'" ; fi
2651    done
2652    
2653  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2654      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2655  fi  fi
2656  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2657  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 1261  echo "#    $MACHINE" >> $MAKEFILE Line 2659  echo "#    $MACHINE" >> $MAKEFILE
2659  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2660  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2661  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2662  echo "#    $0 $@" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2663  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2664  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2665    
2666  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2667  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
2668  EXE_SVD=$EXECUTABLE"_svd"  EXE_SVD=$EXECUTABLE"_svd"
2669    
2670  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2671  #  #
2672    # OPTFILE="$OPTFILE"
2673    #
2674  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2675  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2676  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 1281  cat >>$MAKEFILE <<EOF Line 2681  cat >>$MAKEFILE <<EOF
2681  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2682  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2683  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2684  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2685  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2686  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 1290  cat >>$MAKEFILE <<EOF Line 2688  cat >>$MAKEFILE <<EOF
2688  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2689    
2690  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2691  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2692  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2693  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2694  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2695  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2696  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2697    OADTOOLS    = ${OADTOOLS}
2698    
2699  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2700  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 1303  EXE_AD      = ${EXE_AD} Line 2702  EXE_AD      = ${EXE_AD}
2702  EXE_FTL     = ${EXE_FTL}  EXE_FTL     = ${EXE_FTL}
2703  EXE_SVD     = ${EXE_SVD}  EXE_SVD     = ${EXE_SVD}
2704    
2705    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2706    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2707    
2708    # These files are created by Makefile
2709    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2710  EOF  EOF
2711    
2712  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2713        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2714    else
2715        echo "EMBEDDED_FILES = " >>$MAKEFILE
2716    fi
2717    
2718  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2719  # Unix ln (link)  # Unix ln (link)
2720  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2721  # Dependency generator  # Dependency generator
2722  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2723  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 1320  KPP = ${KPP} Line 2726  KPP = ${KPP}
2726  FC = ${FC}  FC = ${FC}
2727  # Fortran compiler  # Fortran compiler
2728  F90C = ${F90C}  F90C = ${F90C}
2729    # C compiler
2730    CC = ${CC}
2731  # Link editor  # Link editor
2732  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2733    
2734  # Defines for CPP  # Defines for CPP
2735  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1331  INCLUDES = ${INCLUDES} Line 2739  INCLUDES = ${INCLUDES}
2739  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2740  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2741  # Optim./debug for FC  # Optim./debug for FC
2742  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2743  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2744  # Optim./debug for FC  # Optim./debug for FC
2745  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2746  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2747    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2748  # Flags for CC  # Flags for CC
2749  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2750  # Files that should not be optimized  # Files that should not be optimized
2751  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2752  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2753  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2754  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2755  # Name of the Mekfile  # Name of the makefile
2756  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2757    # Name of the make program
2758    MAKE = ${MAKE}
2759    
2760  EOF  EOF
2761    
2762  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2763  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2764  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2765  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2766  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2767  echo               >> $MAKEFILE  cat ad_flow_files.tmp   >> $MAKEFILE
2768  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  
2769  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2770  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2771    echo >> $MAKEFILE
2772    
2773  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  # add definitions for preprocessed sources
2774  rm -f ad_flow_files.inc  # and note that not all systems allow case sensitive extensions
2775    # hence the $FS and $FS90 here.
2776    # for fixed format f90 files we use ff90 or FF90 resp
2777    # but these are not expected to be the original source files
2778    
2779    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2780    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2781    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2782    echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2783    echo >> $MAKEFILE
2784    echo '.SUFFIXES:' >> $MAKEFILE
2785    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2786    
2787  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2788    
2789  .SUFFIXES:  all: fwd_exe_target
2790  .SUFFIXES: .o .f .p .F .c .F90 .f90  fwd_exe_target:
2791            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2792            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2793            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2794            @-rm -f ad_config.template
2795            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2796    
2797  all: \$(EXECUTABLE)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2798  \$(EXECUTABLE): \$(OBJFILES)          @echo Creating \$@ ...
2799          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2800    
2801  depend:  depend:
2802          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2803          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2804          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2805            -rm -f makedepend.out
2806    
2807    lib: libmitgcmuv.a
2808    
2809  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  libmitgcmuv.a: \$(OBJFILES)
2810            ar rcv libmitgcmuv.a \$(OBJFILES)
2811            ar d   libmitgcmuv.a main.o
2812    
2813  small_f: \$(F77FILES) \$(F90FILES)  obj: \$(OBJFILES)
2814    
2815    links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2816    
2817    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2818    
2819  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2820          @printf 'running ... '          @printf 'running ... '
2821          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2822    
2823    # remove most of the files that "make" generates
2824  clean:  clean:
2825          -cat AD_CONFIG.template > AD_CONFIG.h          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2826          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.o
2827            -rm -rf *.$FS *.flowdir
2828            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2829    
2830    # remove most of the files that "make" and "make depend" generate
2831  Clean:  Clean:
2832          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2833          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2834          -rm -f Makefile.bak genmake_state genmake_*optfile make.log          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2835            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2836            -rm -f genmake_warnings genmake_errors make.log
2837    
2838    # remove also the executable, files that "genmake2" generates (except Makefile)
2839    #         and output from a run (plus log files from testreport)
2840  CLEAN:  CLEAN:
2841          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2842            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2843            -rm -f $LOGFILE genmake_state genmake_*optfile
2844            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2845          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2846          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2847          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2848          -rm -f \$(EXECUTABLE) output.txt          -rm -f *.txt STD* *diagnostics.log datetime
2849            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2850            -rm -rf mnc_test_*
2851    
 #eh3 Makefile: makefile  
2852  makefile:  makefile:
2853          ${0} $@          $THIS_SCRIPT $G2ARGS
2854  cleanlinks:  cleanlinks:
2855          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2856    
2857  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are created by make
2858  .F.f:  ${PACKAGES_DOT_H}:
2859          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          @echo Creating \$@ ...
2860  .f.o:          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2861    AD_CONFIG.h:
2862            @echo Creating \$@ ...
2863            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
2864    FC_NAMEMANGLE.h:
2865            @echo Creating \$@ ...
2866            echo "$FC_NAMEMANGLE" > \$@
2867    
2868    BUILD_INFO.h:
2869            @echo Creating \$@ ...
2870    EOF
2871    
2872    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2873    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2874    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2875    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2876    
2877    if test "x$EMBED_SRC" = xt ; then
2878        cat >>$MAKEFILE <<EOF
2879    
2880    decode_files.o : EMBEDDED_FILES.h
2881    
2882    ##  \$(F77_PP_SRC_FILES)
2883    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2884            @echo Creating \$@ ...
2885            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2886            -rm -f all_fF.tar.gz
2887            -gzip all_fF.tar
2888    
2889    EMBEDDED_FILES.h : all_fF.tar.gz
2890            @echo Creating \$@ ...
2891            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2892    
2893    EOF
2894    fi
2895    
2896    cat >>$MAKEFILE <<EOF
2897    
2898    # The normal chain of rules is (  .F - .$FS - .o  )
2899    
2900    ## This nullifies any default implicit rules concerning these two file types:
2901    ## %.o : %.F
2902    
2903    # C preprocessing and replacing the _d in constants:
2904    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
2905    
2906    .F.$FS:
2907            \$(CPPCMD)  > \$@
2908    .$FS.o:
2909            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2910    .F.o:
2911          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2912  .F90.f90:  .F90.$FS90:
2913          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
2914  .f90.o:  .FF90.f$FS90:
2915            \$(CPPCMD)  > \$@
2916    .$FS90.o:
2917          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2918    .f$FS90.o:
2919            cp \$< \$(basename  \$<).f90
2920            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2921  .c.o:  .c.o:
2922          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2923    .flow.flowdir:
2924            \$(CPPCMD) > \$@
2925    
2926  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2927  .F.p:  .F.p:
2928          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
2929  .p.f:  .p.$FS:
2930          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2931    
2932    EOF
2933    
2934  #=========================================  #=========================================
2935  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2936    #===  for TAMC/TAF  ======================
2937    
2938    if test "x$OPENAD" = x ; then
2939    
2940    cat >>$MAKEFILE <<EOF
2941    
2942  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2943  TAF            = ${TAF}  TAF            = ${TAF}
# Line 1436  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2952  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2952  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2953  for i in $ad_vars ; do  for i in $ad_vars ; do
2954      name=$i      name=$i
2955      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2956      eval $t1      eval $t1
2957      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2958      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2959  done  done
2960    
2961  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2962  echo >> $MAKEFILE  echo >> $MAKEFILE
2963  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2964  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2965  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2966      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2967      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2968  done  done
2969  echo >> $MAKEFILE  echo >> $MAKEFILE
2970  rm -f ad_files  rm -f adSrcFiles.tmp
2971    
2972  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2973    
2974  # ... AD ...  # ... AD ...
2975  adall: ad_taf  adall: ad_exe_target
2976  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
2977  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2978    
2979    ad_exe_target:
2980            @echo Update AD_CONFIG.h and make \$(EXE_AD)
2981            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2982            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2983            @-rm -f ad_config.template
2984            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
2985    
2986  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
2987            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2988          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2989          @make \$(F77FILES)          @-rm -f ad_config.template
2990          @make \$(AD_FLOW_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
2991          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
2992            cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
2993  ad_taf_output.f: ad_input_code.f  
2994          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
2995          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2996            ls -l ad_input_code_ad.$FS
2997  ad_taf: ad_taf_output.o \$(OBJFILES)          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2998          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)  
2999    adtafonly:
3000  ad_tamc_output.f: ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3001          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          ls -l ad_input_code_ad.$FS
3002          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3003    
3004    \$(EXE_AD): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ad_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3005            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
3006    
3007    ad_tamc_output.$FS: ad_input_code.$FS
3008            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3009            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3010    
3011  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
3012          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3013    
3014    adonlyfwd:
3015            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3016    
3017    adtrick:
3018            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3019    
3020    adobj: ad_taf_output.o \$(OBJFILES)
3021    
3022  # ... FTL ...  # ... FTL ...
3023  ftlall: ftl_taf  ftlall: ftl_exe_target
3024  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
3025  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
3026    
3027  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_exe_target:
3028          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3029          @make \$(F77FILES)          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3030          @make \$(AD_FLOW_FILES)          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3031          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          @-rm -f ad_config.template
3032            \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
 ftl_taf_output.f: ftl_input_code.f  
         \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f  
         cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_taf_output.f  
   
 ftl_taf: ftl_taf_output.o \$(OBJFILES)  
         \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)  
   
 ftl_tamc_output.f: ftl_input_code.f  
         \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f  
         cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_tamc_output.f  
3033    
3034  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_input_code.$FS: \$(AD_FILES)
3035          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3036            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3037            @-rm -f ad_config.template
3038            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3039            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3040            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3041    
3042    ftl_taf_output.$FS: ftl_input_code.$FS
3043            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3044            ls -l ftl_input_code_ftl.$FS
3045            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3046    
3047    ftltafonly:
3048            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3049            ls -l ftl_input_code_ftl.$FS
3050            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3051    
3052    \$(EXE_FTL): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ftl_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3053            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
3054    
3055    ftl_tamc_output.$FS: ftl_input_code.$FS
3056            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3057            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3058    
3059    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3060            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
3061    
3062  # ... SVD ...  # ... SVD ...
3063  svd: svd_taf  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
3064  svd_taf_f: svd_taf_output.f          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
3065            @echo "--->>> Do make svdall afterwards to compile. <<<---"
3066    svdall: svd_touch svd_taf
3067    
3068    svd_taf: \$(OBJFILES)
3069            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
3070    
3071            @echo "--->>> Only COMPILE svd code! <<<---"
3072            @echo "--->>> Assumes you previously <<<---"
3073            @echo "--->>> did make svdtaf        <<<---"
3074    
3075    svd_touch:
3076            @echo "--->>> Only COMPILE svd code! <<<---"
3077            @echo "--->>> Assumes you previously <<<---"
3078            @echo "--->>> did make svdtaf        <<<---"
3079            touch ad_taf_output.$FS ftl_taf_output.$FS
3080            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3081            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3082            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3083            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3084            @-rm -f ad_config.template
3085    
3086  svd_input_code.f: \$(SRCFILES)  EOF
         cmp svd_config.template AD_CONFIG.h || cat svd_config.template > AD_CONFIG.h  
         @make \$(F77FILES)  
         @make \$(AD_FLOW_FILES)  
         cat \$(AD_FLOW_FILES) \$(AD_FILES) > svd_input_code.f  
   
 svd_taf_output.f: svd_input_code.f  
         \$(TAF) \$(SVD_TAF_FLAGS) \$(TAF_EXTRA) svd_input_code.f  
         cat svd_input_code_ad.f | sed -f adjoint_sed > svd_taf_output.f  
3087    
3088  svd_taf: svd_taf_output.o \$(OBJFILES)  fi
         \$(LINK) -o ${EXE_SVD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) svd_taf_output.o \$(LIBS)  
3089    
3090    #===  for OpenAD  ========================
3091    
3092  #=========================================  if test "x$OPENAD" != x ; then
3093    
3094    # ============ begin OpenAD specific section ==============
3095    
3096    cat >>$MAKEFILE <<EOF
3097    
3098    # all the source files linked from the various locations:
3099    ALL_LINKED_FILES= \
3100    \$(F77_SRC_FILES) \
3101    \$(C_SRC_FILES) \
3102    \$(H_SRC_FILES) \
3103    \$(F90_SRC_FILES) \
3104    \$(SPECIAL_FILES)
3105    
3106    ifndef OPENADROOT
3107      \$(error "Error:  environment variable OPENADROOT not defined!")
3108    endif
3109    
3110    ifndef XAIFSCHEMAROOT
3111      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
3112    endif
3113    
3114    ifndef XAIFBOOSTERROOT
3115      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
3116    endif
3117    
3118    EOF
3119    
3120    echo "  Add the source list for common block to module conversion "
3121    echo >> $MAKEFILE
3122    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3123    for i in `cat ${OAD_CB2M_FILES}` ; do
3124      echo    " \\" >> $MAKEFILE
3125      printf " $i" >> $MAKEFILE
3126    done
3127    echo >> $MAKEFILE
3128    
3129    echo "  Add the source list for AD code generation"
3130    echo >> $MAKEFILE
3131    printf "AD_FILES = " >> $MAKEFILE
3132    for i in `cat ${OAD_CB2M_FILES}` ; do
3133      echo    " \\" >> $MAKEFILE
3134      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3135    done
3136    AD_FILES=`cat adSrcFiles.tmp`
3137    for i in $AD_FILES ; do
3138      basename=${i%%.f}
3139      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3140      if test -z "$toBeIgnored" ; then
3141        echo    " \\" >> $MAKEFILE
3142        printf " $i" >> $MAKEFILE
3143      fi
3144    done
3145    echo >> $MAKEFILE
3146    rm -f adSrcFiles.tmp
3147    
3148    cat >>$MAKEFILE <<EOF
3149    
3150    adAll: \$(EXE_AD)
3151    .PHONY: adAll
3152    
3153    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3154    
3155    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3156    
3157    .PHONY: adDepend
3158    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3159            \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3160            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3161            -rm -f makedepend.out
3162    
3163    OPENAD_SUPPORT_F90_SRC_FILES = \
3164    w2f__types.F90 \
3165    OAD_active.F90 \
3166    OAD_cp.F90 \
3167    OAD_rev.F90 \
3168    OAD_tape.F90
3169    
3170    OPENAD_SUPPORT_C_SRC_FILES = \
3171    iaddr.c \
3172    timeRatio.c
3173    
3174    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3175            cat \$^ > \$@
3176    
3177    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3178            cat \$^ > \$@
3179    
3180    f95_test.out: f95_test_mods.f90 f95_test.f90
3181            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3182            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3183    
3184    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3185    
3186    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3187    
3188    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3189    
3190    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3191            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3192    
3193    # create sources files modules from header files containing common blocks
3194    %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3195            \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3196    
3197    # create new header files with USE statements for the new modules made above
3198    %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3199            \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3200    
3201    # change the include directives of everybody to refer to  the new header files with the USE statements
3202    %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3203            \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3204    
3205    # makefile debug rule
3206    small_f: \$(CB2M_F90_PP_SRC_FILES)
3207    .PHONY: small_f
3208    
3209    ad_output.txt: \$(EXE_AD)
3210            @printf 'linking data files ... '
3211            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3212            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3213            @printf 'running ... '
3214            @./\$(EXE_AD) > \$@
3215    
3216    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3217            cat \$^ > \$@
3218    
3219    # canonicalizer
3220    ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3221            \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3222    
3223    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3224    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3225            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3226    
3227    # F -> WHIRL
3228    ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3229            \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
3230    
3231    # WHIRL -> XAIF
3232    ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3233            \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3234    
3235    # XAIF -> XAIF'
3236    ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3237            \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3238    
3239    # XAIF' -> WHIRL'
3240    ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3241            \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3242    
3243    # WHIRL' -> F'
3244    ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3245            \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3246    
3247    # insert template directives
3248    ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3249            \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3250    
3251    PPEXTRAS=\$(wildcard \${OADTOOLS}/ad_template.*.F) \${OADTOOLS}/ad_inline.F
3252    # postprocess F'
3253    postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3254            \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i \${OADTOOLS}/ad_inline.f \$<
3255            # the target is a placeholder to trigger a single execution of the rule
3256            touch \$@
3257    # put this so make knows about the postprocessing output
3258    OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
3259    
3260    # link the XAIF schema files
3261    %.xsd:
3262            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3263    
3264    # link the support files:
3265    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3266            \$(LN) \${OADTOOLS}/\$@ .
3267    
3268    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag oadtempflile \$(PPEXTRAS:.F=.f)
3269    
3270    # ============ end OpenAD specific section ==============
3271    
3272  EOF  EOF
3273    
3274    fi
3275    
3276    #=========================================
3277    
3278  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3279      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3280  fi  fi
# Line 1540  for i in $KPPFILES ; do Line 3286  for i in $KPPFILES ; do
3286      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3287          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3288      fi      fi
3289      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3290  done  done
3291    
3292  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1550  for i in $NOOPTFILES ; do Line 3296  for i in $NOOPTFILES ; do
3296      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3297          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3298      fi      fi
3299      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3300      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3301  done  done
3302    
# Line 1563  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3309  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3309    
3310  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3311    
3312  #  Write the "template" files for the adjoint builds  # Create special header files
3313  cat >AD_CONFIG.template <<EOF  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3314  C  WARNING: This file is automatically generated by genmake2 and  if test ! -f $PACKAGES_DOT_H ; then
3315  C    used by the Makefile rules.  Please DO NOT EDIT this file      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3316  C    unless you are CERTAIN that you know what you are doing.  else
3317        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
3318  #undef ALLOW_ADJOINT_RUN      RETVAL=$?
3319  #undef ALLOW_TANGENTLINEAR_RUN      if test "x$RETVAL" = x0 ; then
3320  #undef ALLOW_ECCO_OPTIMIZATION          rm -f $PACKAGES_DOT_H".tmp"
3321  EOF      else
3322  cat >ad_config.template <<EOF          mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
3323  C  WARNING: This file is automatically generated by genmake2 and          mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3324  C    used by the Makefile rules.  Please DO NOT EDIT this file      fi
3325  C    unless you are CERTAIN that you know what you are doing.  fi
3326    if test ! -f AD_CONFIG.h ; then
3327  #define ALLOW_ADJOINT_RUN      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3328  #undef ALLOW_TANGENTLINEAR_RUN  fi
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >ftl_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file