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revision 1.176 by jmc, Fri Nov 7 04:34:19 2008 UTC revision 1.242 by heimbach, Thu Sep 20 23:12:47 2012 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
173  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
175      cpp_options=$1      cpp_options=$1
176      pkg=$2      pkg=$2
177      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
178      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
179      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
180      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"  
181  }  }
182    
183  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
184  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
185  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
186      cpp_options=$1      cpp_options=$1
187      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
188      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"  
189  }  }
190    
191  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 42  test_for_mpi_in_cpp_eeoptions() { Line 193  test_for_mpi_in_cpp_eeoptions() {
193  test_for_string_in_file() {  test_for_string_in_file() {
194      file=$1      file=$1
195      strng=$2      strng=$2
196      grep -i "$strng" $file > /dev/null 2>&1      grep "$strng" $file > /dev/null 2>&1
197      RETVAL=$?      RETVAL=$?
198      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
199          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
200          grep -i "$strng" $file          grep -i "$strng" $file
201          exit 99          exit 99
202      fi      fi
203      return 0      return 0
# Line 56  test_for_string_in_file() { Line 207  test_for_string_in_file() {
207  # the package list.  # the package list.
208  expand_pkg_groups() {  expand_pkg_groups() {
209      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
210      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
211          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
212          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
# Line 67  expand_pkg_groups() { Line 217  expand_pkg_groups() {
217              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
218                  matched=1                  matched=1
219                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
220                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
221                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
222              else              else
223                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
# Line 110  EOF Line 260  EOF
260              check_for_broken_Ff              check_for_broken_Ff
261          else          else
262              cat <<EOF 2>&1              cat <<EOF 2>&1
263  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
264    (fails the "cp" test) and this program cannot find a suitable    (fails the "cp" test) and this program cannot find a suitable
265    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
266    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
267    
268  EOF  EOF
# Line 137  EOF Line 287  EOF
287  .F.$tfs:  .F.$tfs:
288          $LN \$< \$@          $LN \$< \$@
289  EOF  EOF
290      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
291      RETVAL=$?      RETVAL=$?
292      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
293          if test "x$FS" = x ; then          if test "x$FS" = x ; then
# Line 145  EOF Line 295  EOF
295              FS90='fr9'              FS90='fr9'
296              check_for_broken_Ff              check_for_broken_Ff
297          else          else
298              cat <<EOF 2>&1              echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
299  ERROR: Your file system cannot distinguish between *.F and *.f files              echo "       see simple makefile: '$MAKEFILE' (left here)"
300    (fails the "make/ln" test) and this program cannot find a suitable              echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
301    replacement extension.  Please try a different build environment or              echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
302    contact the <MITgcm-support@mitgcm.org> list for help.              echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
303                echo ""
 EOF  
304              exit -1              exit -1
305              return              return
306          fi          fi
# Line 165  EOF Line 314  EOF
314      return      return
315  }  }
316    
   
317  look_for_makedepend()  {  look_for_makedepend()  {
318    
319      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
# Line 186  look_for_makedepend()  { Line 334  look_for_makedepend()  {
334      #    3) locally build and use the cyrus implementation      #    3) locally build and use the cyrus implementation
335      #    4) fall back to the buggy local xmakedpend script      #    4) fall back to the buggy local xmakedpend script
336      #      #
337        echo >> $LOGFILE
338        echo "running: look_for_makedepend()" >> $LOGFILE
339        if test "x${MAKEDEPEND}" != x ; then
340            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
341            RETVAL=$?
342            if test x"$RETVAL" = x0 ; then
343                build_cyrus_makedepend
344                RETVAL=$?
345                if test "x$RETVAL" != x0 ; then
346                    echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'"
347                    MAKEDEPEND=
348                fi
349            else
350                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
351                RETVAL=$?
352                if test "x$RETVAL" = x0 ; then
353                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
354                fi
355                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
356            fi
357        fi
358      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
359          which makedepend > /dev/null 2>&1          which makedepend > /dev/null 2>&1
360          RV0=$?          RV0=$?
# Line 194  look_for_makedepend()  { Line 363  look_for_makedepend()  {
363          cat <<EOF >> $MAKEFILE          cat <<EOF >> $MAKEFILE
364  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
365  #  #
366  #   Some "makedepend" implementations will die if they cannot  #   Some "makedepend" implementations will die if they cannot
367  #   find a Makefile -- so this file is here to gives them an  #   find a Makefile -- so this file is here to gives them an
368  #   empty one to find and parse.  #   empty one to find and parse.
369  EOF  EOF
370          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
# Line 204  EOF Line 373  EOF
373        stop        stop
374        end        end
375  EOF  EOF
376          makedepend genmake_tc.f > /dev/null 2>&1          makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
377          RV1=$?          RV1=$?
378          test -f $MAKEFILE  &&  rm -f $MAKEFILE          test -f $MAKEFILE  &&  rm -f $MAKEFILE
379          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
380          if test "x${RV0}${RV1}" = x00 ; then          if test "x${RV0}${RV1}" = x00 ; then
381              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
382                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
383          else          else
384              echo "    a system-default makedepend was not found."              echo "    system-default makedepend not found. Try to build cyrus-makedepend"
               
385              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
386              build_cyrus_makedepend              build_cyrus_makedepend
387              RETVAL=$?              RETVAL=$?
388              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" != x0 ; then
389                    echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend"
390                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
391                    echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392              fi              fi
             rm -f ./genmake_cy_md  
         fi  
     else  
         #  echo "MAKEDEPEND=${MAKEDEPEND}"  
         echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1  
         RETVAL=$?  
         if test x"$RETVAL" = x0 ; then  
             build_cyrus_makedepend  
393          fi          fi
394      fi      fi
395  }  }
396    
   
397  build_cyrus_makedepend()  {  build_cyrus_makedepend()  {
398        echo >> $LOGFILE
399        echo "running: build_cyrus_makedepend()" >> $LOGFILE
400      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
401      (      (
402          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
403              &&  ./configure > /dev/null 2>&1  \              &&  ./configure > /dev/null 2>&1  \
404              &&  make > /dev/null 2>&1              &&  $MAKE > /dev/null 2>&1
405          if test -x ./makedepend.exe ; then          if test -x ./makedepend.exe ; then
406              $LN ./makedepend.exe ./makedepend              $LN ./makedepend.exe ./makedepend
407          fi          fi
# Line 249  build_cyrus_makedepend()  { Line 413  build_cyrus_makedepend()  {
413      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
414      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
415          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
416            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
417          return 0          return 0
418      else      else
419          echo "WARNING: unable to build cyrus-imapd-makedepend"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
420          return 1          return 1
421      fi      fi
422  }  }
423    
   
424  build_embed_encode()  build_embed_encode()
425  {  {
426      printf "  building the embed-encode utility...  "      printf "  building the embed-encode utility...  "
427      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
428          if test ! -d "$ROOTDIR/tools/embed_encode" ; then          if test ! -d "$ROOTDIR/tools/embed_encode" ; then
429              echo              echo
430              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
431              echo              echo
432              EMBED_SRC=f              EMBED_SRC=f
433              return 1              return 1
434          fi          fi
435          clist="cc gcc c89 $CC"          clist="cc gcc c89 $CC"
436          for ic in $clist ; do          for ic in $clist ; do
437              comm="$ic -o encode_files encode_files.c"              comm="$ic -o encode_files encode_files.c"
438              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
439              RETVAL=$?              RETVAL=$?
440              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
441                  echo "OK"                  echo "OK"
                 DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
442                  return 0                  return 0
443              fi              fi
444          done          done
# Line 287  build_embed_encode() Line 450  build_embed_encode()
450          return 1          return 1
451      fi      fi
452      echo "OK"      echo "OK"
     DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
453  }  }
454    
455    #  look for possible C compilers
456  # Guess possible config options for this host  look_for_C_compilers() {
457  find_possible_configs()  {      echo >> $LOGFILE
458        echo "running: look_for_C_compilers()" >> $LOGFILE
459      tmp1=`uname`"_"`uname -m`      rm -f ./genmake_hello.c  ./genmake_hello
460      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat >> genmake_hello.c << EOF
     tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`  
     tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`  
     tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`  
     tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`  
     PLATFORM=$tmp3  
     echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32  
     OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`  
     echo "  The platform appears to be:  $PLATFORM"  
       
     echo "test" > test  
     ln -s ./test link  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         LN="ln -s"  
     else  
         echo "Error: \"ln -s\" does not appear to work on this system!"  
         echo "  For help, please contact <MITgcm-support@mitgcm.org>."  
         exit 1  
     fi  
     rm -f test link  
   
     if test "x$CPP" = x ; then  
         CPP="cpp -traditional -P"  
     fi  
   
     look_for_makedepend  
   
     #================================================================  
     #  look for possible C compilers  
     tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"  
     p_CC=  
     for c in $tmp ; do  
         rm -f ./genmake_hello.c  ./genmake_hello  
         cat >> genmake_hello.c << EOF  
461  #include <stdio.h>  #include <stdio.h>
462  int main(int argc, char **argv) {  int main(int argc, char **argv) {
463    printf("Hello!\n");    printf("Hello!\n");
464    return 0;    return 0;
465  }  }
466  EOF  EOF
467          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
468        p_CC=
469        for c in $tmp ; do
470            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
471            echo $COMM >> $LOGFILE
472            $COMM >> $LOGFILE 2>&1
473          RETVAL=$?          RETVAL=$?
474          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
475                echo " $c test successful" >> $LOGFILE
476              p_CC="$p_CC $c"              p_CC="$p_CC $c"
477          fi          fi
478      done      done
# Line 354  Error: No C compilers were found in your Line 488  Error: No C compilers were found in your
488  EOF  EOF
489          exit 1          exit 1
490      else      else
491          echo "  The possible C compilers found in your path are:"          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
         echo "   "$p_CC  
492          if test "x$CC" = x ; then          if test "x$CC" = x ; then
493              CC=`echo $p_CC | $AWK '{print $1}'`              CC=`echo $p_CC | $AWK '{print $1}'`
494              echo "  Setting C compiler to: "$CC              echo "  Setting C compiler to: "$CC
495          fi          fi
496      fi      fi
497        echo " --> set CC='$CC'" >> $LOGFILE
498    }
499    
500    # Guess possible config options for this host
501    find_possible_optfile()  {
502    
503        echo >> $LOGFILE
504        echo "running: find_possible_optfile()" >> $LOGFILE
505        tmp1=`uname`"_"`uname -m`
506        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
507        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
508        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
509        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
510        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
511        PLATFORM=$tmp3
512        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
513        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
514        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
515    
516      #================================================================      #================================================================
517      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
518      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"      echo "  look for possible FORTRAN compilers" >> $LOGFILE
519        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
520      p_FC=      p_FC=
521      for c in $tmp ; do      rm -f ./genmake_hello.f
522          rm -f ./hello.f ./hello      cat >> genmake_hello.f <<EOF
         cat >> hello.f <<EOF  
523        program hello        program hello
524        do i=1,3        do i=1,3
525          print *, 'hello world : ', i          print *, 'hello world : ', i
526        enddo        enddo
527        end        end
528  EOF  EOF
529          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
530            COMM="$f -o genmake_hello genmake_hello.f"
531            echo $COMM >> $LOGFILE
532            $COMM >> $LOGFILE 2>&1
533          RETVAL=$?          RETVAL=$?
534          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
535              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
536                p_FC="$p_FC $f"
537          fi          fi
538      done      done
539      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
540      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
541          cat 1>&2 <<EOF          cat 1>&2 <<EOF
542    
# Line 394  Error: No Fortran compilers were found i Line 549  Error: No Fortran compilers were found i
549  EOF  EOF
550          exit 1          exit 1
551      else      else
552          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
553      fi      fi
554    
555      #  Use the first of the compilers found in the current PATH      #  Use the first of the compilers found in the current PATH
# Line 404  EOF Line 558  EOF
558          for i in $p_FC ; do          for i in $p_FC ; do
559              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
560              if test -r $OPTFILE ; then              if test -r $OPTFILE ; then
561                  echo "  Setting OPTFILE to: "$OPTFILE                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
562                  break                  break
563              fi              fi
564          done          done
# Line 413  EOF Line 567  EOF
567      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
568          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
569          if test ! -r $OPTFILE ; then          if test ! -r $OPTFILE ; then
570               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
571          fi          fi
572      fi      fi
573  #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #   for i in $p_FC ; do  
 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
 #if test -r $p_OF ; then  
 #    OPTFILE=$p_OF  
 #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #    break  
 #fi  
 #   done  
574      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
575          cat 1>&2 <<EOF          cat 1>&2 <<EOF
576    
# Line 442  Error: No options file was found in:  $R Line 586  Error: No options file was found in:  $R
586  EOF  EOF
587          exit 1          exit 1
588      fi      fi
       
 #     # look for possible MPI libraries  
 #     mpi_libs=  
 #     mpi_fort=`which mpif77 2>/dev/null`  
 #     RETVAL=$?  
 #     if test "x${RETVAL}" = x0 ; then  
 #       cat >>test.f <<EOF  
 #       PROGRAM HELLO  
 #       DO 10, I=1,10  
 #       PRINT *,'Hello World'  
 #    10 CONTINUE  
 #       STOP  
 #       END  
 # EOF  
 #       eval "$mpi_fort -showme test.f > out"  
 #       RETVAL=$?  
 #       if test "x${RETVAL}" = x0 ; then  
 #           a=`cat out`  
 #           for i in $a ; do  
 #               case $i in  
 #                   -*)  
 #                       mpi_libs="$mpi_libs $i" ;;  
 #               esac  
 #           done  
 #           echo "The MPI libs appear to be:"  
 #           echo "  "$mpi_libs  
 #       fi  
 #       rm -f test.f out  
 #     fi  
   
589  }  }
590    
591  #  Parse the package dependency information  #  Parse the package dependency information
# Line 480  get_pdepend_list()  { Line 594  get_pdepend_list()  {
594      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
595      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
596      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
597          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
598          > ./.pd_tmp          > ./.pd_tmp
599        RETVAL=$?
600        if test ! "x${RETVAL}" = x0 ; then
601          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
602          exit 1
603        fi
604      . ./.pd_tmp      . ./.pd_tmp
605      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
     printf "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME  
       -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME  
           Use "NAME" as the adoptfile.  By default, the file at  
           "tools/adjoint_options/adjoint_default" will be used.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -cc NAME | --cc NAME | -cc=NAME | --cc=NAME  
           Use "NAME" as the C compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as gcc, c89, cc, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -ignoretime | -ignore_time | --ignoretime | --ignore_time  
           Ignore all the "wall clock" routines entirely.  This will  
           not in any way hurt the model results -- it simply means  
           that the code that checks how long the model spends in  
           various routines will give junk values.  
   
     -ts | --ts  
           Produce timing information per timestep  
     -papis | --papis  
           Produce summary MFlop/s (and IPC) with PAPI per timestep  
     -pcls | --pcls  
           Produce summary MFlop/s etc. with PCL per timestep  
     -foolad | --foolad  
           Fool the AD code generator  
     -papi | --papi  
           Performance analysis with PAPI  
     -pcl | --pcl  
           Performance analysis with PCL  
     -hpmt | --hpmt  
           Performance analysis with the HPM Toolkit  
   
     -gsl | --gsl  
           Use GSL to control floating point rounding and precision  
     -devel | --devel  
           Add additional warning and debugging flags for development  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from \$PATH/include, link to libraries  
           from \$PATH/lib and use binaries from \$PATH/bin.  
   
     -es | --es | -embed-source | --embed-source  
           Embed a tarball containing the full source code  
           (including the Makefile, etc.) used to build the  
           executable [off by default]  
   
     -bash NAME  
           Explicitly specify the Bourne or BASH shell to use  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/devel_HOWTO/  
   
 EOF  
   
     exit 1  
606  }  }
607    
608  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
# Line 642  get_fortran_c_namemangling()  { Line 610  get_fortran_c_namemangling()  {
610    
611      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
612      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
613          return 0          return 0
614      fi      fi
615        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
616    
617      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
618        
619      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
620  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
621  EOF  EOF
622      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
623        echo ' '$COMM >> $LOGFILE
624        $COMM >> $LOGFILE 2>&1
625      RETVAL=$?      RETVAL=$?
626      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
627          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
628          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
629    
630  WARNING: C test compile fails   WARNING: C test compile fails
631  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
632  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
633  EOF  EOF
634          return 1          return 1
635      fi      fi
# Line 666  EOF Line 637  EOF
637      RETVAL=$?      RETVAL=$?
638      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
639          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
640          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
641    
642  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
643  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
644  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
645  EOF  EOF
646          return 1          return 1
647      fi      fi
# Line 680  EOF Line 651  EOF
651        call tsub( string )        call tsub( string )
652        end        end
653  EOF  EOF
654      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
655        echo ' '$COMM >> $LOGFILE
656        $COMM >> $LOGFILE 2>&1
657      RETVAL=$?      RETVAL=$?
658      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
659          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
660          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
661    
662  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
663  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
664  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
665  EOF  EOF
666          return 1          return 1
667      fi      fi
# Line 696  EOF Line 669  EOF
669      RETVAL=$?      RETVAL=$?
670      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
671          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
672          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
673    
674  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
675  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
676  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
677  EOF  EOF
678          return 1          return 1
679      fi      fi
# Line 726  EOF Line 699  EOF
699    
700      #  cleanup the testing files      #  cleanup the testing files
701      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
702    
703        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
704    }
705    
706  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
707        echo >> $LOGFILE
708        echo "running: check_HAVE_CLOC()" >> $LOGFILE
709      get_fortran_c_namemangling      get_fortran_c_namemangling
710      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
711  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 747  void FC_NAMEMANGLE(cloc) ( double *curti Line 723  void FC_NAMEMANGLE(cloc) ( double *curti
723  }  }
724  EOF  EOF
725      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
726      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
727      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
728      RET_C=$?      RET_C=$?
729      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
730        program hello        program hello
# Line 759  EOF Line 735  EOF
735        end        end
736  EOF  EOF
737      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
738      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
739      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
740      RET_F=$?      RET_F=$?
741      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
742      RETVAL=$?      RETVAL=$?
743      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
744          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
745      fi      fi
746      rm -f genmake_tc*      rm -f genmake_tc*
747        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
748  }  }
749    
   
750  check_HAVE_SIGREG()  {  check_HAVE_SIGREG()  {
751      if test ! "x$HAVE_SIGREG" = x ; then      if test ! "x$HAVE_SIGREG" = x ; then
752          return          return
753      fi      fi
754        echo >> $LOGFILE
755        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
756      get_fortran_c_namemangling      get_fortran_c_namemangling
757      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
758  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 808  void FC_NAMEMANGLE(sigreg) (int * aip) Line 785  void FC_NAMEMANGLE(sigreg) (int * aip)
785  }  }
786  EOF  EOF
787      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
788      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
789      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
790      RET_C=$?      RET_C=$?
791      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
792        program hello        program hello
# Line 819  EOF Line 796  EOF
796        call sigreg(anint)        call sigreg(anint)
797        end        end
798  EOF  EOF
799      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SIGREG()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
800      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
801      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
802      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
803      RETVAL=$?      RETVAL=$?
804      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
805          HAVE_SIGREG=t          HAVE_SIGREG=t
         DEFINES="$DEFINES -DHAVE_SIGREG"  
806      fi      fi
807      rm -f genmake_tc*      rm -f genmake_tc*
808        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
809  }  }
810    
   
811  check_HAVE_SETRLSTK()  {  check_HAVE_SETRLSTK()  {
     if test "x$HAVE_SETRLSTK" = xt ; then  
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
         return  
     fi    
812      if test ! "x$HAVE_SETRLSTK" = x ; then      if test ! "x$HAVE_SETRLSTK" = x ; then
813          return          return
814      fi      fi
815        echo >> $LOGFILE
816        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
817      get_fortran_c_namemangling      get_fortran_c_namemangling
818      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
819  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 858  void FC_NAMEMANGLE(setrlstk) () Line 830  void FC_NAMEMANGLE(setrlstk) ()
830  }  }
831  EOF  EOF
832      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
833      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
834      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
835      RET_C=$?      RET_C=$?
836      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
837        program hello        program hello
# Line 867  EOF Line 839  EOF
839        call setrlstk()        call setrlstk()
840        end        end
841  EOF  EOF
842      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
843      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
844      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
845      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
846      RETVAL=$?      RETVAL=$?
847      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
848          HAVE_SETRLSTK=t          HAVE_SETRLSTK=t
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
849      fi      fi
850      rm -f genmake_tc*      rm -f genmake_tc*
851        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
852  }  }
853    
   
854  check_HAVE_STAT()  {  check_HAVE_STAT()  {
855        echo >> $LOGFILE
856        echo "running: check_HAVE_STAT()" >> $LOGFILE
857      get_fortran_c_namemangling      get_fortran_c_namemangling
858      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
859  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 904  void FC_NAMEMANGLE(tfsize) ( int *nbyte Line 875  void FC_NAMEMANGLE(tfsize) ( int *nbyte
875  }  }
876  EOF  EOF
877      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
878      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
879      $COMM >> genmake_tc.log 2>&1      $COMM >> genmake_tc.log 2>&1
880      RET_C=$?      RET_C=$?
881      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
# Line 914  EOF Line 885  EOF
885        print *," HELLO WORLD", nbyte        print *," HELLO WORLD", nbyte
886        end        end
887  EOF  EOF
888      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_STAT()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
889      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
890      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
891      $COMM >> genmake_tc.log 2>&1      $COMM >> genmake_tc.log 2>&1
892      RETVAL=$?      RETVAL=$?
893      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
894          HAVE_STAT=t          HAVE_STAT=t
         DEFINES="$DEFINES -DHAVE_STAT"  
895      fi      fi
896      rm -f genmake_tc*      rm -f genmake_tc*
897        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
898  }  }
899    
   
900  check_netcdf_libs()  {  check_netcdf_libs()  {
901      if test ! "x$SKIP_NETCDF_CHECK" = x ; then      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
902          return          return
903      fi      fi
904      echo >> genmake_warnings      echo >> $LOGFILE
905      echo "running: check_netcdf_libs()" >> genmake_warnings      echo "running: check_netcdf_libs()" >> $LOGFILE
906      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
907        program fgennc        program fgennc
908  #include "netcdf.inc"  #include "netcdf.inc"
# Line 952  EOF Line 920  EOF
920        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
921        end        end
922  EOF  EOF
923      echo "===  genmake_tnc.F  ===" > genmake_tnc.log      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
924      cat genmake_tnc.F >> genmake_tnc.log      cat genmake_tnc.F >> genmake_tnc.log
925      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log      echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
926      RET_CPP=f      RET_CPP=f
927      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
928      echo "$COMM" >> genmake_tnc.log      echo "$COMM" >> genmake_tnc.log
# Line 970  EOF Line 938  EOF
938      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
939          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
940      RET_COMPILE=$?      RET_COMPILE=$?
941      cat genmake_tnc.log >> genmake_warnings      cat genmake_tnc.log >> $LOGFILE
942    
943      #EH3  Remove test program execution for machines that either disallow      #EH3  Remove test program execution for machines that either disallow
944      #EH3  execution or cannot support it (eg. cross-compilers)      #EH3  execution or cannot support it (eg. cross-compilers)
# Line 981  EOF Line 949  EOF
949    
950      if test "x$RET_COMPILE" = x0 ; then      if test "x$RET_COMPILE" = x0 ; then
951          HAVE_NETCDF=t          HAVE_NETCDF=t
952            echo "check_netcdf: successful" >> $LOGFILE
953      else      else
954          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
955          echo "try again with added '-lnetcdf'" > genmake_tnc.log          echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
956          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
957          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
958          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
# Line 991  EOF Line 960  EOF
960              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
961              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
962          RET_COMPILE=$?          RET_COMPILE=$?
963          cat genmake_tnc.log >> genmake_warnings          echo >> $LOGFILE
964            cat genmake_tnc.log >> $LOGFILE
965          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
966              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
967              HAVE_NETCDF=t              HAVE_NETCDF=t
968                echo "check_netcdf: successful" >> $LOGFILE
969          else          else
970          # try again with "-lnetcdff" added to the libs          # try again with "-lnetcdff" added to the libs
971              echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log              echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
972              echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log              echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
973              echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log              echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
974              echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log              echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
# Line 1005  EOF Line 976  EOF
976                  &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \                  &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
977                  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1                  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
978              RET_COMPILE=$?              RET_COMPILE=$?
979              cat genmake_tnc.log >> genmake_warnings              echo >> $LOGFILE
980                cat genmake_tnc.log >> $LOGFILE
981              if test "x$RET_COMPILE" = x0 ; then              if test "x$RET_COMPILE" = x0 ; then
982                  LIBS="$LIBS -lnetcdff -lnetcdf"                  LIBS="$LIBS -lnetcdff -lnetcdf"
983                  HAVE_NETCDF=t                  HAVE_NETCDF=t
984                    echo "check_netcdf: successful" >> $LOGFILE
985              fi              fi
986          fi          fi
987      fi      fi
988      rm -f genmake_tnc*      rm -f genmake_tnc*
989        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
990  }  }
991    
992    check_lapack_libs()  {
993        if test ! "x$SKIP_LAPACK_CHECK" = x ; then
994            return
995        fi
996        echo >> $LOGFILE
997        echo "running: check_lapack_libs()" >> $LOGFILE
998        cat <<EOF > genmake_tla.F
999          program fgenla
1000          integer info
1001          integer ipiv( 2 )
1002          double precision ab( 4, 2 ), b( 2 )
1003          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1004          data b / 1., 1. /
1005          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1006          IF (info .NE. 0) write(*,*) 'Error:', info
1007          write(*,*) b
1008          end
1009    EOF
1010        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1011        cat genmake_tla.F >> genmake_tla.log
1012        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1013        RET_CPP=f
1014        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1015        echo "$COMM" >> genmake_tla.log
1016        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1017        if test "x$RET_CPP" = xf ; then
1018            echo "  WARNING: CPP failed to pre-process the lapack test." \
1019                >> genmake_tla.log
1020            echo "    Please check that \$INCLUDES is properly set." \
1021                >> genmake_tla.log
1022        fi
1023        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1024        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1025        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1026            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1027        RET_COMPILE=$?
1028        cat genmake_tla.log >> $LOGFILE
1029    
1030        # test program execution not always possible (see check_netcdf_libs)
1031        #
1032        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1033        #RETVAL=$?
1034        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1035    
1036        if test "x$RET_COMPILE" = x0 ; then
1037            HAVE_LAPACK=t
1038            echo "check_lapack: successful" >> $LOGFILE
1039        else
1040            # try again with "-llapack" added to the libs
1041            echo "==> try again with added '-llapack'" > genmake_tla.log
1042            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1043            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1044            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1045            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1046                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1047                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1048            RET_COMPILE=$?
1049            echo >> $LOGFILE
1050            cat genmake_tla.log >> $LOGFILE
1051            if test "x$RET_COMPILE" = x0 ; then
1052                LIBS="$LIBS -llapack"
1053                HAVE_LAPACK=t
1054                echo "check_lapack: successful" >> $LOGFILE
1055            else
1056            # try again with "-lf77blas -lcblas" added to the libs
1057                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1058                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1059                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1060                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1061                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1062                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1063                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1064                RET_COMPILE=$?
1065                echo >> $LOGFILE
1066                cat genmake_tla.log >> $LOGFILE
1067                if test "x$RET_COMPILE" = x0 ; then
1068                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1069                    HAVE_LAPACK=t
1070                    echo "check_lapack: successful" >> $LOGFILE
1071                else
1072                # try again with "-latlas" added to the libs
1073                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1074                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1075                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1076                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1077                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1078                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1079                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1080                    RET_COMPILE=$?
1081                    echo >> $LOGFILE
1082                    cat genmake_tla.log >> $LOGFILE
1083                    if test "x$RET_COMPILE" = x0 ; then
1084                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1085                        HAVE_LAPACK=t
1086                        echo "check_lapack: successful" >> $LOGFILE
1087                    fi
1088                fi
1089            fi
1090        fi
1091        rm -f genmake_tla*
1092        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1093    }
1094    
1095    
1096  ###############################################################################  ###############################################################################
# Line 1038  ENABLE= Line 1114  ENABLE=
1114  DISABLE=  DISABLE=
1115  # MAKEFILE=  # MAKEFILE=
1116  # MAKEDEPEND=  # MAKEDEPEND=
1117  PDEPEND=  PKG_DEPEND=
1118  DUMPSTATE=t  PKG_GROUPS=
1119  PDEFAULT=  DUMPSTATE=f
1120  OPTFILE=  OPTFILE=
1121  INCLUDES="-I. $INCLUDES"  INCLUDES="-I. $INCLUDES"
1122  FFLAGS=  FFLAGS=
1123  FOPTIM=  FOPTIM=
1124  FEXTRAFLAGS=  FEXTRAFLAGS=
1125    USE_EXTENDED_SRC=
1126    EXTENDED_SRC_FLAG=
1127    GET_FC_VERSION=
1128  CFLAGS=  CFLAGS=
1129  KFLAGS1=  KFLAGS1=
1130  KFLAGS2=  KFLAGS2=
# Line 1056  NOOPTFILES= Line 1135  NOOPTFILES=
1135  NOOPTFLAGS=  NOOPTFLAGS=
1136  MPI=  MPI=
1137  MPIPATH=  MPIPATH=
1138    OMP=
1139    OMPFLAG=
1140    USE_R4=
1141  TS=  TS=
1142  PAPIS=  PAPIS=
1143  PCLS=  PCLS=
# Line 1077  HAVE_STAT= Line 1159  HAVE_STAT=
1159  HAVE_NETCDF=  HAVE_NETCDF=
1160  HAVE_ETIME=  HAVE_ETIME=
1161  IGNORE_TIME=  IGNORE_TIME=
1162    HAVE_LAPACK=
1163    
1164  MODS=  MODS=
1165  TOOLSDIR=  TOOLSDIR=
# Line 1084  SOURCEDIRS= Line 1167  SOURCEDIRS=
1167  INCLUDEDIRS=  INCLUDEDIRS=
1168  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1169    
1170    #- local config file
1171    gm_local="genmake_local"
1172    
1173  G2ARGS=  G2ARGS=
1174  BASH=  BASH=
1175  PWD=`pwd`  PWD=`pwd`
# Line 1099  MACHINE=`uname -a` Line 1185  MACHINE=`uname -a`
1185  EXECUTABLE=  EXECUTABLE=
1186  EXEHOOK=  EXEHOOK=
1187  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1188  IEEE=  IEEE=
1189  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1190      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
# Line 1120  FTL_TAF_FLAGS= Line 1205  FTL_TAF_FLAGS=
1205  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1206  TAMC_EXTRA=  TAMC_EXTRA=
1207    
   
1208  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1209  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1210  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1211    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1212    
1213  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1214  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1215  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1216  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s6="TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1217  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="PWD THISHOST THISUSER THISDATE THISVER MACHINE"
1218  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s8="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK"
1219    
1220  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1221  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1222  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1223  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA"
1224    
1225  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1226  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1227    
1228  cat <<EOF  cat <<EOF
1229    
1230  GENMAKE :  GENMAKE :
1231    
1232  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1233  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1234    or for more detail see the Developer's HOWTO manual at:
1235    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1236    
1237  EOF  EOF
1238    
1239    LOGFILE="genmake.log"
1240    #- clean-up previous genmake logfiles:
1241    rm -f genmake_state genmake_*optfile $LOGFILE
1242    
1243  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 printf "  getting local config information:  "  
 if test -f $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1244    
1245  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1246  #parse_options  #parse_options
1247  ac_prev=  ac_prev=
1248  for ac_option in "$@" ; do  for ac_option in "$@" ; do
# Line 1185  for ac_option in "$@" ; do Line 1255  for ac_option in "$@" ; do
1255          ac_prev=          ac_prev=
1256          continue          continue
1257      fi      fi
1258        
1259      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1260        
1261      case $ac_option in      case $ac_option in
1262            
1263          -help | --help | -h | --h)          -help | --help | -h | --h)
1264              usage ;;              usage ;;
1265            
1266          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1267              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1268          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1269              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1270          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1271              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1272            
1273          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1274              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1275          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1276              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1277            
1278          -pdepend | --pdepend)          -pdepend | --pdepend)
1279              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1280          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1281              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1282            
1283          -pdefault | --pdefault)          -pgroups | --pgroups)
1284              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1285          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1286              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1287            
1288          -make | --make | -m | --m)          -make | --make | -m | --m)
1289              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1290          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1291              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1292            
1293          -bash | --bash)          -bash | --bash)
1294              ac_prev=BASH ;;              ac_prev=BASH ;;
1295          -bash=* | --bash=*)          -bash=* | --bash=*)
1296              BASH=$ac_optarg ;;              BASH=$ac_optarg ;;
1297            
1298          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1299              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1300          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
1301              MAKEDEPEND=$ac_optarg ;;              MAKEDEPEND=$ac_optarg ;;
1302            
1303          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -mf | --mf)
1304              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1305          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1306              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1307            
1308          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1309              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1310              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1311              echo              echo
1312              usage              usage
1313              ;;              ;;
1314            
1315          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1316              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1317          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1318              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1319            
1320          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1321              ac_prev=MODS ;;              ac_prev=MODS ;;
1322          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1323              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1324            
1325          -disable | --disable)          -disable | --disable)
1326              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1327          -disable=* | --disable=*)          -disable=* | --disable=*)
1328              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1329            
1330          -enable | --enable)          -enable | --enable)
1331              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1332          -enable=* | --enable=*)          -enable=* | --enable=*)
1333              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1334            
1335          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1336              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1337          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 1271  for ac_option in "$@" ; do Line 1341  for ac_option in "$@" ; do
1341  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1342  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1343  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1344            
1345          -cc | --cc)          -cc | --cc)
1346              ac_prev=CC ;;              ac_prev=CC ;;
1347          -cc=* | --cc=*)          -cc=* | --cc=*)
1348              CC=$ac_optarg ;;              CC=$ac_optarg ;;
1349            
1350          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1351              ac_prev=FC ;;              ac_prev=FC ;;
1352          -fc=* | --fc=*)          -fc=* | --fc=*)
1353              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1354            
1355          -fs | --fs)          -fs | --fs)
1356              ac_prev=FS ;;              ac_prev=FS ;;
1357          -fs=* | --fs=*)          -fs=* | --fs=*)
1358              FS=$ac_optarg ;;              FS=$ac_optarg ;;
1359            
1360          -fs90 | --fs90)          -fs90 | --fs90)
1361              ac_prev=FS90 ;;              ac_prev=FS90 ;;
1362          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1363              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
1364            
1365            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1366                USE_R4=true ;;
1367    
1368          -ieee | --ieee)          -ieee | --ieee)
1369              IEEE=true ;;              IEEE=true ;;
1370          -noieee | --noieee)          -noieee | --noieee)
1371              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1372            -devel | --devel)
1373                IEEE=true ; DEVEL=true ;;
1374            -gsl | --gsl)
1375                GSL=true ;;
1376    
1377          -ts | --ts)          -ts | --ts)
1378              TS=true ;;              TS=true ;;
# Line 1312  for ac_option in "$@" ; do Line 1389  for ac_option in "$@" ; do
1389          -hpmt | --hpmt)          -hpmt | --hpmt)
1390              HPMT=true ;;              HPMT=true ;;
1391    
         -gsl | --gsl)  
             GSL=true ;;  
   
         -devel | --devel)  
             DEVEL=true ;;  
   
1392          -mpi | --mpi)          -mpi | --mpi)
1393              MPI=true ;;              MPI=true ;;
1394          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1395              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1396              MPI=true ;;              MPI=true ;;
1397            
1398  #       -jam | --jam)          -omp | --omp)
1399  #           JAM=1 ;;              OMP=true ;;
1400  #       -nojam | --nojam)          -omp=* | --omp=*)
1401  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1402                        OMP=true ;;
1403    
1404          -ds | --ds)          -ds | --ds)
1405              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1406            
1407            -extra_flag | --extra_flag)
1408                ac_prev=FEXTRAFLAGS ;;
1409            -extra_flag=* | --extra_flag=*)
1410                FEXTRAFLAGS=$ac_optarg ;;
1411    
1412          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1413              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1414          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 1341  for ac_option in "$@" ; do Line 1418  for ac_option in "$@" ; do
1418              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1419          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1420              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1421            
1422          -ignoretime | -ignore_time | --ignoretime | --ignore_time)          -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1423              IGNORE_TIME="-DIGNORE_TIME" ;;              IGNORE_TIME="-DIGNORE_TIME" ;;
1424    
# Line 1352  for ac_option in "$@" ; do Line 1429  for ac_option in "$@" ; do
1429              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1430              usage              usage
1431              ;;              ;;
1432            
1433          *)          *)
1434              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1435              usage              usage
1436              ;;              ;;
1437            
1438      esac      esac
1439        
1440  done  done
1441    
1442    printf "  getting local config information:  "
1443    if test -f $gm_local ; then
1444        echo "using $gm_local"
1445        . $gm_local
1446    else
1447        echo "none found"
1448    fi
1449    
1450  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1451      echo      echo
1452      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1453      echo "  file.  This file format is no longer supported.  For directions on"      echo "  file.  This file format is no longer supported.  For directions on"
1454      echo "  how to setup and use the new \"genmake2\" script, please see:"      echo "  how to setup and use the new \"genmake2\" script, please see:"
1455      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1456      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1457      echo "WARNING: ignore \"./.genmakerc\" and continue."      echo "WARNING: ignore \"./.genmakerc\" and continue."
1458      echo      echo
1459  fi  fi
1460    
1461  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
# Line 1383  if test "x${ROOTDIR}" = x ; then Line 1467  if test "x${ROOTDIR}" = x ; then
1467          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1468              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1469                  ROOTDIR=$d                  ROOTDIR=$d
1470                  printf "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1471                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1472                  break                  break
1473              fi              fi
1474          done          done
# Line 1402  if test ! -d ${ROOTDIR} ; then Line 1486  if test ! -d ${ROOTDIR} ; then
1486  fi  fi
1487    
1488  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1489  if test -f "${ROOTDIR}/doc/tag-index" ; then  version_file="${ROOTDIR}/doc/tag-index"
1490      THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`  if test -f $version_file ; then
1491        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1492    #-  remove ./BUILD_INFO.h file if older than version_file
1493        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1494            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1495            rm -f ./BUILD_INFO.h
1496        fi
1497  fi  fi
1498    
1499  if test "x$MAKEFILE" = x ; then  if test "x$MAKEFILE" = x ; then
1500      MAKEFILE="Makefile"      MAKEFILE="Makefile"
1501  fi  fi
1502    
1503  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:"
1504  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1505      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1506          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1507          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1508          find_possible_configs          find_possible_optfile
1509      else      else
1510          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1511      fi      fi
# Line 1430  if test "x$OPTFILE" != xNONE ; then Line 1520  if test "x$OPTFILE" != xNONE ; then
1520              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1521              exit 1              exit 1
1522          fi          fi
1523          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1524              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1525          fi          fi
1526      else      else
# Line 1439  if test "x$OPTFILE" != xNONE ; then Line 1529  if test "x$OPTFILE" != xNONE ; then
1529      fi      fi
1530  fi  fi
1531    
1532  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1533  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1534      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
1535          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
# Line 1457  if test "x${AD_OPTFILE}" != xNONE ; then Line 1547  if test "x${AD_OPTFILE}" != xNONE ; then
1547              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1548              exit 1              exit 1
1549          fi          fi
1550          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1551              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1552          fi          fi
1553      else      else
# Line 1485  Error: no Fortran compiler: please speci Line 1575  Error: no Fortran compiler: please speci
1575  EOF  EOF
1576      exit 1      exit 1
1577  fi  fi
1578    if test "x$GET_FC_VERSION" != x ; then
1579      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1580      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1581      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1582      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1583      if test -s genmake_fc_vers1 ; then
1584        cat genmake_fc_vers1 >> $LOGFILE
1585      else
1586        cat genmake_fc_vers2 >> $LOGFILE
1587      fi
1588      echo "<-- compiler version ----" >> $LOGFILE
1589      rm -f genmake_fc_vers1 genmake_fc_vers2
1590    fi
1591    
1592  if test "x$CC" = x ; then  if test "x$CC" = x ; then
1593      CC=cc      look_for_C_compilers
 #     cat <<EOF 1>&2  
 # Error: no C compiler: please specify using one of the following:  
 #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"  
 #   2) the "-cc=XXX" command-line option  
 #   3) the "./genmake_local" file  
 # EOF  
 #     exit 1  
1594  fi  fi
1595    
1596  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1597      LINK=$FC      LINK=$FC
1598  fi  fi
# Line 1502  if test "x$MAKE" = x ; then Line 1600  if test "x$MAKE" = x ; then
1600      MAKE="make"      MAKE="make"
1601  fi  fi
1602  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1603      CPP=cpp      CPP="cpp -traditional -P"
1604  fi  fi
1605  #EH3 === UGLY ===  #EH3 === UGLY ===
1606  #  The following is an ugly little hack to check for $CPP in /lib/ and  #  The following is an ugly little hack to check for $CPP in /lib/ and
# Line 1529  EOF Line 1627  EOF
1627  else  else
1628      rm -f test_cpp      rm -f test_cpp
1629  fi  fi
1630    
1631  look_for_makedepend  look_for_makedepend
1632    
1633    #  Check that soft-link command is set and usable
1634  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1635      LN="ln -s"      LN="ln -s"
1636  fi  fi
# Line 1539  RETVAL=$? Line 1640  RETVAL=$?
1640  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1641      cat <<EOF 1>&2      cat <<EOF 1>&2
1642    
1643  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1644    command in the optfile.    command in the optfile.
1645    
1646  EOF  EOF
# Line 1557  check_for_broken_Ff Line 1658  check_for_broken_Ff
1658    
1659  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1660        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1661        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI"
1662    fi
1663    if test ! "x$OMP" = x ; then
1664          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1665          FFLAGS="$FFLAGS $OMPFLAG"
1666          F90FLAGS="$F90FLAGS $OMPFLAG"
1667          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1668    fi
1669    
1670    if test ! "x$USE_R4" = x ; then
1671          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1672          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1673  fi  fi
1674    
1675  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1676        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
1677        if test ! "x$FOOLAD" = x ; then        if test ! "x$FOOLAD" = x ; then
1678              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1679        else        else
1680              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1681        fi        fi
# Line 1599  if test ! "x$PAPI" = x ; then Line 1711  if test ! "x$PAPI" = x ; then
1711            echo "  Sticking with PAPI flop summary per timestep!"            echo "  Sticking with PAPI flop summary per timestep!"
1712        else        else
1713            echo "  Turning on performance analysis with PAPI"            echo "  Turning on performance analysis with PAPI"
1714            echo "  Please make sure PAPIINC, PAPILIB are defined"            echo "  Please make sure PAPIINC, PAPILIB are defined"
1715            DEFINES="$DEFINES -DUSE_PAPI"            DEFINES="$DEFINES -DUSE_PAPI"
1716            INCLUDES="$INCLUDES $PAPIINC"            INCLUDES="$INCLUDES $PAPIINC"
1717            LIBS="$LIBS $PAPILIB"            LIBS="$LIBS $PAPILIB"
# Line 1611  if test ! "x$PCL" = x ; then Line 1723  if test ! "x$PCL" = x ; then
1723            echo "  Sticking with PCL flop summary per timestep!"            echo "  Sticking with PCL flop summary per timestep!"
1724        else        else
1725            echo "  Turning on performance analysis with PCL"            echo "  Turning on performance analysis with PCL"
1726            echo "  Please make sure PCLINC, PCLLIB are defined"            echo "  Please make sure PCLINC, PCLLIB are defined"
1727            DEFINES="$DEFINES -DUSE_PCL"            DEFINES="$DEFINES -DUSE_PCL"
1728            INCLUDES="$INCLUDES $PCLINC"            INCLUDES="$INCLUDES $PCLINC"
1729            LIBS="$LIBS $PCLLIB"            LIBS="$LIBS $PCLLIB"
# Line 1621  if test ! "x$HPMT" = x ; then Line 1733  if test ! "x$HPMT" = x ; then
1733        if test ! "x$PAPI" = x ; then        if test ! "x$PAPI" = x ; then
1734            echo "  PAPI and the HPM Toolkit cannot co-exist!"            echo "  PAPI and the HPM Toolkit cannot co-exist!"
1735            echo "  Sticking with PAPI!"            echo "  Sticking with PAPI!"
1736        else if test ! "x$PCL" = x ; then        else
1737            if test ! "x$PCL" = x ; then
1738            echo "  PCL and the HPM Toolkit cannot co-exist!"            echo "  PCL and the HPM Toolkit cannot co-exist!"
1739            echo "  Sticking with PCL!"            echo "  Sticking with PCL!"
1740        else          else
1741            echo "  Turning on performance analysis with the HPM Toolkit"            echo "  Turning on performance analysis with the HPM Toolkit"
1742            echo "  Please make sure HPMTINC, HPMTLIB are defined"            echo "  Please make sure HPMTINC, HPMTLIB are defined"
1743            DEFINES="$DEFINES -DUSE_LIBHPM"            DEFINES="$DEFINES -DUSE_LIBHPM"
1744            INCLUDES="$INCLUDES $HPMTINC"            INCLUDES="$INCLUDES $HPMTINC"
1745            LIBS="$LIBS $HPMTLIB"            LIBS="$LIBS $HPMTLIB"
1746        fi          fi
1747        fi        fi
1748  fi  fi
1749  if test ! "x$GSL" = x ; then  if test ! "x$GSL" = x ; then
# Line 1640  if test ! "x$GSL" = x ; then Line 1753  if test ! "x$GSL" = x ; then
1753        INCLUDES="$INCLUDES $GSLINC"        INCLUDES="$INCLUDES $GSLINC"
1754        LIBS="$LIBS $GSLLIB"        LIBS="$LIBS $GSLLIB"
1755  fi  fi
1756    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1757    if test ! "x$USE_EXTENDED_SRC" = x ; then
1758          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1759          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1760    fi
1761    
1762  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1763  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
# Line 1706  rm -f genmake_tcomp* Line 1824  rm -f genmake_tcomp*
1824  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1825  check_HAVE_CLOC  check_HAVE_CLOC
1826  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1827        DEFINES="$DEFINES -DHAVE_CLOC"
1828      echo "yes"      echo "yes"
1829  else  else
1830      echo "no"      echo "no"
# Line 1720  rm -f genmake_t* Line 1839  rm -f genmake_t*
1839  printf "  Can we unlimit the stack size using $FC...  "  printf "  Can we unlimit the stack size using $FC...  "
1840  check_HAVE_SETRLSTK  check_HAVE_SETRLSTK
1841  if test "x$HAVE_SETRLSTK" = xt ; then  if test "x$HAVE_SETRLSTK" = xt ; then
1842        DEFINES="$DEFINES -DHAVE_SETRLSTK"
1843      echo "yes"      echo "yes"
1844  else  else
1845      echo "no"      echo "no"
# Line 1729  rm -f genmake_t* Line 1849  rm -f genmake_t*
1849  printf "  Can we register a signal handler using $FC...  "  printf "  Can we register a signal handler using $FC...  "
1850  check_HAVE_SIGREG  check_HAVE_SIGREG
1851  if test "x$HAVE_SIGREG" = xt ; then  if test "x$HAVE_SIGREG" = xt ; then
1852        DEFINES="$DEFINES -DHAVE_SIGREG"
1853      echo "yes"      echo "yes"
1854  else  else
1855      echo "no"      echo "no"
# Line 1738  rm -f genmake_t* Line 1859  rm -f genmake_t*
1859  printf "  Can we use stat() through C calls...  "  printf "  Can we use stat() through C calls...  "
1860  check_HAVE_STAT  check_HAVE_STAT
1861  if test "x$HAVE_STAT" != x ; then  if test "x$HAVE_STAT" != x ; then
1862        DEFINES="$DEFINES -DHAVE_STAT"
1863      echo "yes"      echo "yes"
1864  else  else
1865      echo "no"      echo "no"
# Line 1747  rm -f genmake_t* Line 1869  rm -f genmake_t*
1869  printf "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
1870  check_netcdf_libs  check_netcdf_libs
1871  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
1872        DEFINES="$DEFINES -DHAVE_NETCDF"
1873        echo "yes"
1874    else
1875        echo "no"
1876    fi
1877    
1878    printf "  Can we create LAPACK-enabled binaries...  "
1879    check_lapack_libs
1880    if test "x$HAVE_LAPACK" != x ; then
1881        DEFINES="$DEFINES -DHAVE_LAPACK"
1882      echo "yes"      echo "yes"
1883  else  else
1884      echo "no"      echo "no"
# Line 1758  if test "x$EMBED_SRC" = xt ; then Line 1890  if test "x$EMBED_SRC" = xt ; then
1890  fi  fi
1891  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
1892      ENABLE="$ENABLE embed_files"      ENABLE="$ENABLE embed_files"
1893    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
1894  fi  fi
1895    
   
1896  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1897  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1898  for d in $MODS ; do  for d in $MODS ; do
1899      if test ! -d $d ; then      if test ! -d $d ; then
1900          echo          echo
1901          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1902          exit 1          exit 1
1903      else      else
1904          printf " $d"          printf "$d "
1905          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1906          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1907      fi      fi
1908  done  done
1909  echo  echo
1910    
1911  if test "x${PLATFORM}" = x ; then  #if test "x${PLATFORM}" = x ; then
1912      PLATFORM=$p_PLATFORM  #    PLATFORM=$p_PLATFORM
1913  fi  #fi
1914    
1915  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1916      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
# Line 1818  ERROR: neither of the two default script Line 1950  ERROR: neither of the two default script
1950      ${TOOLSDIR}/set64bitConst.sh      ${TOOLSDIR}/set64bitConst.sh
1951      ${TOOLSDIR}/set64bitConst.csh      ${TOOLSDIR}/set64bitConst.csh
1952    
1953    are working so please check paths or specify (with \$S64) a    are working so please check paths or specify (with \$S64) a
1954    working version of this script.    working version of this script.
1955    
1956  EOF  EOF
# Line 1830  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD Line 1962  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD
1962    
1963  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1964    
1965    #  Set Standard Code Directories:
1966    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1967        STANDARDDIRS="eesupp model"
1968    fi
1969    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
1970    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
1971    ckM=$?
1972    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
1973    ckE=$?
1974    if test $ckM = 0 -a $ckE = 1 ; then
1975        STANDARDDIRS="$STANDARDDIRS eesupp"
1976    fi
1977    
1978  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
1979  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
1980  #  they appear as regular source code  #  they appear as regular source code
1981  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1982      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1983      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
1984        ) > make_eesupp.errors 2>&1
1985      RETVAL=$?      RETVAL=$?
1986      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1987          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 1850  fi Line 1996  fi
1996  for pdir in exch2 regrid ; do  for pdir in exch2 regrid ; do
1997      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1998          echo "  Making source files in pkg/${pdir} from templates"          echo "  Making source files in pkg/${pdir} from templates"
1999          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2000            ) > make_${pdir}.errors 2>&1
2001          RETVAL=$?          RETVAL=$?
2002          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
2003              rm -f make_${pdir}.errors              rm -f make_${pdir}.errors
# Line 1863  for pdir in exch2 regrid ; do Line 2010  for pdir in exch2 regrid ; do
2010  done  done
2011    
2012  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2013  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2014      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2015      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2016          PDEPEND=$tmp  fi
2017      else  if  test "x${PKG_DEPEND}" = x ; then
2018          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2019          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2020  else  else
2021      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2022          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2023          exit 1          exit 1
2024      fi      fi
2025        echo "  getting package dependency info from  $PKG_DEPEND"
2026    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2027        get_pdepend_list $PKG_DEPEND
2028  fi  fi
2029  echo "  getting package dependency info from  $PDEPEND"  
2030  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2031  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2032  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2033      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2034      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2035  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2036  if test ! "x${RETVAL}" = x0 ; then  fi
2037      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2038      exit 1          echo "Warning:  No package groups information was specified."
2039            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2040    else
2041        if test ! -r ${PKG_GROUPS} ; then
2042            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2043            exit 1
2044        fi
2045        echo "  getting package groups info from      $PKG_GROUPS"
2046  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
2047    
2048  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2049  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2050  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2051  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2052      for i in "." $MODS ; do      for i in "." $MODS ; do
2053          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2054                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2055                  break                  break
2056          fi          fi
2057      done      done
2058  fi  fi
2059  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2060      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2061  fi      if test "x${PKG_GROUPS}" = x ; then
2062  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2063      echo "    default packages file disabled"          exit 1
2064        fi
2065  else  else
2066      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2067          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2068            exit 1
2069      else      else
2070          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2071          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2072          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2073          RETVAL=$?          RETVAL=$?
2074          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2075              printf "Error: can't parse default package list "              printf "Error: can't parse package list "
2076              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2077              exit 1              exit 1
2078          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         RET=1  
         while test $RET = 1 ; do expand_pkg_groups; RET=$?; done  
         echo "    after group expansion packages are:  $PACKAGES"  
2079      fi      fi
2080  fi  fi
2081    for i in $pkg_list ; do
2082        PACKAGES="$PACKAGES $i"
2083    done
2084    echo     "    before group expansion packages are:$PACKAGES"
2085    if test "x${PKG_GROUPS}" != x ; then
2086        RET=1
2087        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2088        echo "    after group expansion packages are: $PACKAGES"
2089    fi
2090    
2091  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2092    echo "" > ./.tmp_pack
2093  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2094      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2095  done  done
# Line 1959  PACKAGES="$PACKAGES $ENABLE" Line 2117  PACKAGES="$PACKAGES $ENABLE"
2117  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2118      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2119      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2120          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2121          exit 1          exit 1
2122      fi      fi
2123      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2124  done  done
# Line 1969  for i in `grep -v "-" ./.tmp_pack | sort Line 2127  for i in `grep -v "-" ./.tmp_pack | sort
2127      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2128  done  done
2129  rm -f ./.tmp_pack  rm -f ./.tmp_pack
2130  echo "    packages are:  $PACKAGES"  echo "    packages are: $PACKAGES"
2131    
2132  #  Check for package MNC: if NetCDF is available, then build the MNC  #  Check for package MNC: if NetCDF is available, then build the MNC
2133  #  template files ; otherwise, delete mnc from the list of packages.  #  template files ; otherwise, delete mnc from the list of packages.
2134  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2135  RETVAL=$?  mnc_in=$?
2136  if test "x$RETVAL" = x0 ; then  if test "x$HAVE_NETCDF" != xt ; then
2137      if test "x$HAVE_NETCDF" != xt ; then      if test "x$mnc_in" = x0 ; then
2138          cat <<EOF          cat <<EOF
   
2139  *********************************************************************  *********************************************************************
2140  WARNING: the "mnc" package was enabled but tests failed to compile  WARNING: the "mnc" package was enabled but tests failed to compile
2141    NetCDF applications.  Please check that:    NetCDF applications.  Please check that:
2142    
2143    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2144    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2145         NetCDF library to link against.         NetCDF library to link against.
2146    
2147    Due to this failure, the "mnc" package is now DISABLED.    Due to this failure, the "mnc" package is now DISABLED.
2148  *********************************************************************  *********************************************************************
   
2149  EOF  EOF
2150          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2151          DISABLE="$DISABLE mnc"          DISABLE="$DISABLE mnc"
2152      else      else
2153          ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1      #  this prevent to add mnc (due to pdepend rules) if not available
2154          RETVAL=$?          DISABLE="$DISABLE mnc"
2155          if test "x${RETVAL}" = x0 ; then      fi
2156              rm -f make_mnc.errors  else
2157          else      # we have NetCDF, we try to build MNC template files
2158              echo "Error: problem encountered while building source files in pkg/mnc:"      ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2159              cat make_mnc.errors 1>&2      RETVAL=$?
2160        if test "x${RETVAL}" = x0 ; then
2161            rm -f make_mnc.errors
2162        else
2163            echo "Error: problem encountered while building source files in pkg/mnc:"
2164            cat make_mnc.errors 1>&2
2165            if test "x$mnc_in" = x0 ; then
2166              exit 1              exit 1
2167            else
2168                DISABLE="$DISABLE mnc"
2169          fi          fi
2170      fi      fi
2171  fi  fi
2172    
2173  #  Check for package PROFILES: if NetCDF is not available,  #  Check for package PROFILES: if NetCDF is not available,
2174  #  then delete profiles from the list of available packages.  #  then delete profiles from the list of available packages.
2175  echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1  if test "x$HAVE_NETCDF" != xt ; then
2176  RETVAL=$?      echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2177  if test "x$RETVAL" = x0 ; then      RETVAL=$?
2178      if test "x$HAVE_NETCDF" != xt ; then      if test "x$RETVAL" = x0 ; then
2179          cat <<EOF          cat <<EOF
   
2180  *********************************************************************  *********************************************************************
2181  WARNING: the "profiles" package was enabled but tests failed to  WARNING: the "profiles" package was enabled but tests failed to
2182    compile NetCDF applications.  Please check that:    compile NetCDF applications.  Please check that:
2183    
2184    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2185    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2186         NetCDF library to link against.         NetCDF library to link against.
2187    
2188    Due to this failure, the "profiles" package is now DISABLED.    Due to this failure, the "profiles" package is now DISABLED.
2189  *********************************************************************  *********************************************************************
   
2190  EOF  EOF
2191          PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2192          DISABLE="$DISABLE profiles"          DISABLE="$DISABLE profiles"
2193        else
2194        #  this prevent to add profiles (due to pdepend rules) if not available
2195            DISABLE="$DISABLE profiles"
2196      fi      fi
2197  fi  fi
2198    
2199  echo "  applying package dependency rules"  #  Check for package RADTRANS: if LAPACK is not available,
2200  ck=  #  then issue a warning that the direct radtrans solver is not available.
2201  while test "x$ck" != xtt ; do  if test "x$HAVE_LAPACK" != xt ; then
2202        echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1
2203        RETVAL=$?
2204        if test "x$RETVAL" = x0 ; then
2205            cat <<EOF
2206    *********************************************************************
2207    WARNING: the "radtrans" package was enabled but tests failed to
2208      compile LAPACK applications.  This means that the direct radtrans
2209      solver is not available and compilation will fail if it is enabled.
2210      If you want to use the direct solver, please check that:
2211    
2212      1) LAPACK is correctly installed for this compiler and
2213      2) the LIBS variable (within the "optfile") specifies the correct
2214         LAPACK library to link against.
2215    *********************************************************************
2216    EOF
2217        fi
2218    fi
2219    
2220    if  test "x${PKG_DEPEND}" != x ; then
2221      echo "  applying package dependency rules"
2222      ck=
2223      while test "x$ck" != xtt ; do
2224      i=0      i=0
2225      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2226      rtot=$nname      rtot=$nname
# Line 2049  while test "x$ck" != xtt ; do Line 2236  while test "x$ck" != xtt ; do
2236                  pin="t"                  pin="t"
2237              fi              fi
2238          done          done
2239            #  or in the current $STANDARDDIRS list?
2240            for p in $STANDARDDIRS ; do
2241                if test "x$p" = "x$pname" ; then pin="t" ; fi
2242            done
2243    
2244          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2245          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 2071  while test "x$ck" != xtt ; do Line 2262  while test "x$ck" != xtt ; do
2262    
2263          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2264          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2265              #echo "   " $pname ": need to add :" $dname              #echo "   " $pname ": need to add :" $dname
2266              in_dis="f"              in_dis="f"
2267              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2268                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 2092  while test "x$ck" != xtt ; do Line 2283  while test "x$ck" != xtt ; do
2283          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2284          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2285              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2286              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2287              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2288              exit 1              exit 1
2289          fi          fi
2290          i=`echo "$i + 1" | bc -l`          i=`echo "$i + 1" | bc -l`
2291          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2292      done      done
2293      ck=$ck"t"      ck=$ck"t"
2294  done    done
2295  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2296    fi
2297  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2298      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2299      if test -d $adr ; then      if test -d $adr ; then
# Line 2118  done Line 2310  done
2310    
2311  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2312  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2313  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2314  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2315  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2316  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2317  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 2136  for n in $names ; do Line 2328  for n in $names ; do
2328          done          done
2329          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2330              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2331              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2332          fi          fi
2333      fi      fi
2334  done  done
# Line 2147  for i in $PACKAGES ; do Line 2339  for i in $PACKAGES ; do
2339  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2340    
2341  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2342      case $i in      case $i in
2343          aim_v23)          aim_v23)
2344              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2345              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
2346              ;;              ;;
2347      esac      esac
# Line 2157  for i in $PACKAGES ; do Line 2349  for i in $PACKAGES ; do
2349    
2350  done  done
2351    
2352  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2353  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2354  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2355      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2356          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 2194  for i in $spaths ; do Line 2383  for i in $spaths ; do
2383      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2384          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2385          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2386          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2387          for n in $names ; do          for n in $names ; do
2388              test_for_package_in_cpp_options $CPP_OPTIONS $n              test_for_package_in_cpp_options $CPP_OPTIONS $n
2389          done          done
2390      fi      fi
2391      try="$i/CPP_EEOPTIONS.h"      try="$i/CPP_EEOPTIONS.h"
2392      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2393          echo "    found CPP_EEOPTIONS=\"$try\""          echo "    found CPP_EEOPTIONS=\"$try\""
2394          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2395  #**** not yet enabled ****  #**** not yet enabled ****
2396  #        test_for_mpi_in_cpp_eeoptions $try  #        test_for_mpi_in_cpp_eeoptions $try
2397  #**** not yet enabled ****  #**** not yet enabled ****
# Line 2220  if test -f ./adSrcFiles.tmp ; then Line 2409  if test -f ./adSrcFiles.tmp ; then
2409      rm -f ./adSrcFiles.tmp      rm -f ./adSrcFiles.tmp
2410  fi  fi
2411  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2412    touch adSrcFiles.tmp
2413  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2414      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2415      for j in $list_files ; do      for j in $list_files ; do
# Line 2252  if test ! "x$DIVA" = x ; then Line 2442  if test ! "x$DIVA" = x ; then
2442          fi          fi
2443          MPIINCLUDEDIR='$MPIHOME/include'          MPIINCLUDEDIR='$MPIHOME/include'
2444      fi      fi
2445        
2446      if test -r $MPIINCLUDEDIR/mpif.h ; then      if test -r $MPIINCLUDEDIR/mpif.h ; then
2447          for i in $MPI_HEADER_FILES; do          for i in $MPI_HEADER_FILES; do
2448              cp -p $MPIINCLUDEDIR/$i ./mpi_headers              cp -p $MPIINCLUDEDIR/$i ./mpi_headers
# Line 2287  if test ! -r ".links.tmp/foo" ; then Line 2477  if test ! -r ".links.tmp/foo" ; then
2477  fi  fi
2478  rm -f .links.tmp/foo  rm -f .links.tmp/foo
2479    
2480  if test "x$OPENAD" != x ; then  if test "x$OPENAD" != x ; then
2481      OAD_DONT_COMPILE="/dev/null"      OAD_DONT_COMPILE="/dev/null"
2482      OAD_DONT_TRANSFORM="/dev/null"      OAD_DONT_TRANSFORM="/dev/null"
2483      OAD_KEEP_ORIGINAL="/dev/null"      OAD_KEEP_ORIGINAL="/dev/null"
2484      OAD_CB2M_FILES="/dev/null"      OAD_CB2M_FILES="/dev/null"
2485        OADTOOLS="$TOOLSDIR/OAD_support"
2486        test -f "oadtempflile"  &&  \rm -f "oadtempflile"
2487    cat >> "oadtempflile" <<EOF
2488    $OADTOOLS
2489    EOF
2490      echo "  looking for dontCompile file:  "      echo "  looking for dontCompile file:  "
2491      for i in "." $MODS ; do      for i in "." $MODS ; do
2492          if test -r $i"/dontCompile" ; then          if test -r $i"/dontCompile" ; then
# Line 2340  for d in $alldirs ; do Line 2535  for d in $alldirs ; do
2535      deplist=      deplist=
2536      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2537      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2538      if test "x$OPENAD" != x ; then      if test "x$OPENAD" != x ; then
2539          sfiles=`( echo $sfiles | grep -v _cb2m\. )`          sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2540      fi      fi
2541      for sf in $sfiles ; do      for sf in $sfiles ; do
2542          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2543              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2544                  ignore_f=f                  ignore_f=f
2545                  case $d/$sf in                  case $d/$sf in
2546                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2547                          ignore_f=t                          ignore_f=t
2548                          ;;                          ;;
2549                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2550                          ignore_f=t                          ignore_f=t
2551                          ;;                          ;;
2552                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2553                          ignore_f=t                          ignore_f=t
2554                          ;;                          ;;
2555                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2556                          ignore_f=t                          ignore_f=t
2557                          ;;                          ;;
2558                    ./EMBEDDED_FILES.h)                    ./EMBEDDED_FILES.h)
2559                          ignore_f=t                          ignore_f=t
2560                          ;;                          ;;
2561                    *)                    *)
2562                          #  For the local directory *ONLY*,                          #  For the local directory *ONLY*,
2563                          #  ignore all soft-links                          #  ignore all soft-links
2564                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
# Line 2373  for d in $alldirs ; do Line 2568  for d in $alldirs ; do
2568                              deplist="$deplist $sf"                              deplist="$deplist $sf"
2569                          fi                          fi
2570                          ;;                          ;;
2571                  esac                  esac
2572                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2573                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2574                      case $extn in                      case $extn in
2575                        F)                        F)
2576                          echo    " \\"  >> F77srclist.tmp                          echo    " \\"  >> F77srclist.tmp
2577                          printf " $sf" >> F77srclist.tmp                          printf " $sf" >> F77srclist.tmp
2578                          if test "x$OPENAD" != x ; then                          if test "x$OPENAD" != x ; then
2579                              basename=${sf%%.F}                              basename=${sf%%.F}
2580                              isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`                              isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2581                              if test -z "$isAD" ; then                              if test -z "$isAD" ; then
2582                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2583                                  if test -z "$toBeIgnored" ; then                                  if test -z "$toBeIgnored" ; then
2584                                      echo    " \\"  >> nonADF77srclist.tmp                                      echo    " \\"  >> nonADF77srclist.tmp
2585                                      printf " $sf" >> nonADF77srclist.tmp                                      printf " $sf" >> nonADF77srclist.tmp
2586                                  else                                  else
2587                                      echo "    not to be compiled   :  $sf"                                      echo "    not to be compiled   :  $sf"
2588                                  fi                                  fi
2589                              else # file is initially listed as an AD file we want to exclude it                              else # file is initially listed as an AD file we want to exclude it
2590                                   # or we want to retain the untransformed version                                   # or we want to retain the untransformed version
2591                                  notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`                                  notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2592                                  untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`                                  untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2593                                  if test -n "$notToBeTransformed"; then                                  if test -n "$notToBeTransformed"; then
2594                                      echo "    not to be transformed:  $sf"                                      echo "    not to be transformed:  $sf"
2595                                  fi                                  fi
2596                                  if test -n "$untransformedVersionToBeKept" ; then                                  if test -n "$untransformedVersionToBeKept" ; then
2597                                      echo "    original to be kept  :  $sf"                                      echo "    original to be kept  :  $sf"
2598                                  fi                                      fi
2599                                  if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then                                  if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2600                                      echo    " \\"  >> nonADF77srclist.tmp                                      echo    " \\"  >> nonADF77srclist.tmp
2601                                      printf " $sf" >> nonADF77srclist.tmp                                      printf " $sf" >> nonADF77srclist.tmp
# Line 2420  for d in $alldirs ; do Line 2615  for d in $alldirs ; do
2615                          echo    " \\"  >> hsrclist.tmp                          echo    " \\"  >> hsrclist.tmp
2616                          printf " $sf" >> hsrclist.tmp                          printf " $sf" >> hsrclist.tmp
2617                          ;;                          ;;
2618                      flow)                      flow)
2619                          echo    " \\"  >> ad_flow_files.tmp                          echo    " \\"  >> ad_flow_files.tmp
2620                          printf " $sf" >> ad_flow_files.tmp                          printf " $sf" >> ad_flow_files.tmp
2621                          ;;                          ;;
# Line 2431  for d in $alldirs ; do Line 2626  for d in $alldirs ; do
2626      done      done
2627      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2628        if test "$d" != "." ; then        if test "$d" != "." ; then
2629          echo "" >> srclinks.tmp          echo "" >> srclinks.tmp
2630          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2631          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2632  # We need to make sure that the link isn't already there.  # We need to make sure that the link isn't already there.
# Line 2449  echo "" >> F90srclist.tmp Line 2644  echo "" >> F90srclist.tmp
2644  echo "" >> hsrclist.tmp  echo "" >> hsrclist.tmp
2645  echo "" >> ad_flow_files.tmp  echo "" >> ad_flow_files.tmp
2646    
2647    CMDLINE=$0
2648    for xx in "$@" ; do nw=`echo $xx | wc -w`
2649        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2650                            else CMDLINE="$CMDLINE '$xx'" ; fi
2651    done
2652    
2653  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2654      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2655  fi  fi
2656  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2657  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 2458  echo "#    $MACHINE" >> $MAKEFILE Line 2659  echo "#    $MACHINE" >> $MAKEFILE
2659  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2660  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2661  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2662  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2663  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2664  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2665    
# Line 2469  EXE_SVD=$EXECUTABLE"_svd" Line 2670  EXE_SVD=$EXECUTABLE"_svd"
2670  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2671  #  #
2672  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2673  #  #
2674  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2675  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2676  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 2480  cat >>$MAKEFILE <<EOF Line 2681  cat >>$MAKEFILE <<EOF
2681  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2682  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2683  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2684  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2685  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2686  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 2489  cat >>$MAKEFILE <<EOF Line 2688  cat >>$MAKEFILE <<EOF
2688  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2689    
2690  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2691  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2692  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2693  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2694  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2695  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2696  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2697    OADTOOLS    = ${OADTOOLS}
2698    
2699  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2700  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 2515  else Line 2715  else
2715      echo "EMBEDDED_FILES = " >>$MAKEFILE      echo "EMBEDDED_FILES = " >>$MAKEFILE
2716  fi  fi
2717    
 #  Note: figure out some way to add Hyades JAM libraries here  
2718  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2719  # Unix ln (link)  # Unix ln (link)
2720  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2721  # Dependency generator  # Dependency generator
2722  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2723  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 2555  NOOPTFILES = ${NOOPTFILES} Line 2752  NOOPTFILES = ${NOOPTFILES}
2752  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2753  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2754  LIBS = ${LIBS}  LIBS = ${LIBS}
2755  # Name of the Mekfile  # Name of the makefile
2756  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2757    # Name of the make program
2758    MAKE = ${MAKE}
2759    
2760  EOF  EOF
2761    
# Line 2571  rm -f F77srclist.tmp nonADF77srclist.tmp Line 2770  rm -f F77srclist.tmp nonADF77srclist.tmp
2770    
2771  echo >> $MAKEFILE  echo >> $MAKEFILE
2772    
2773  # add definitions for preprocessed sources  # add definitions for preprocessed sources
2774  # and note that not all systems allow case sensitive extensions  # and note that not all systems allow case sensitive extensions
2775  # hence the $FS and $FS90 here.  # hence the $FS and $FS90 here.
2776  # for fixed format f90 files we use ff90 or FF90 resp  # for fixed format f90 files we use ff90 or FF90 resp
2777  # but these are not expected to be the original source files  # but these are not expected to be the original source files
2778    
2779  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2780  echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE  echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2781  echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2782  echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE  echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2783  echo >> $MAKEFILE  echo >> $MAKEFILE
2784  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2785  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2786    
2787  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2788    
2789  all: \$(EXECUTABLE)  all: fwd_exe_target
2790    fwd_exe_target:
2791            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2792            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2793            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2794            @-rm -f ad_config.template
2795            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2796    
2797  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2798          @echo Creating \$@ ...          @echo Creating \$@ ...
2799          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2800    
2801  depend:  depend:
2802          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2803          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2804          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2805          -rm -f makedepend.out          -rm -f makedepend.out
2806    
# Line 2603  libmitgcmuv.a: \$(OBJFILES) Line 2810  libmitgcmuv.a: \$(OBJFILES)
2810          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
2811          ar d   libmitgcmuv.a main.o          ar d   libmitgcmuv.a main.o
2812    
2813    obj: \$(OBJFILES)
2814    
2815  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2816    
2817  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
# Line 2611  output.txt: \$(EXECUTABLE) Line 2820  output.txt: \$(EXECUTABLE)
2820          @printf 'running ... '          @printf 'running ... '
2821          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2822    
2823    # remove most of the files that "make" generates
2824  clean:  clean:
2825          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2826          -rm -rf *.o          -rm -rf *.o
2827          -rm -rf *.$FS *.flowdir          -rm -rf *.$FS *.flowdir
2828          -rm -rf *.f$FS90 *_mod.h *_mod.F90 *.FF90 *.mod-whirl ad_input*          -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2829          -rm -rf temp.sed reslice.dat  
2830    # remove most of the files that "make" and "make depend" generate
2831  Clean:  Clean:
2832          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2833          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2834          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2835          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log f90mkdepend.log *.bak          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2836          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log          -rm -f genmake_warnings genmake_errors make.log
2837    
2838    # remove also the executable, files that "genmake2" generates (except Makefile)
2839    #         and output from a run (plus log files from testreport)
2840  CLEAN:  CLEAN:
2841          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2842            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2843            -rm -f $LOGFILE genmake_state genmake_*optfile
2844            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2845          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2846          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2847          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2848          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime          -rm -f *.txt STD* *diagnostics.log datetime
2849          -rm -f *_MIT_CE_000.opt0000 costfunction*0000          -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2850          -rm -rf mnc_test_*          -rm -rf mnc_test_*
2851    
 #eh3 Makefile: makefile  
2852  makefile:  makefile:
2853          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
2854  cleanlinks:  cleanlinks:
# Line 2641  cleanlinks: Line 2857  cleanlinks:
2857  # Special targets (SPECIAL_FILES) which are created by make  # Special targets (SPECIAL_FILES) which are created by make
2858  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2859          @echo Creating \$@ ...          @echo Creating \$@ ...
2860          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2861  AD_CONFIG.h:  AD_CONFIG.h:
2862          @echo Creating \$@ ...          @echo Creating \$@ ...
2863          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
2864  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
2865          @echo Creating \$@ ...          @echo Creating \$@ ...
2866          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
# Line 2663  if test "x$EMBED_SRC" = xt ; then Line 2879  if test "x$EMBED_SRC" = xt ; then
2879    
2880  decode_files.o : EMBEDDED_FILES.h  decode_files.o : EMBEDDED_FILES.h
2881    
2882  ##  \$(F77_PP_SRC_FILES)  ##  \$(F77_PP_SRC_FILES)
2883  all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile  all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2884          @echo Creating \$@ ...          @echo Creating \$@ ...
2885          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
# Line 2682  cat >>$MAKEFILE <<EOF Line 2898  cat >>$MAKEFILE <<EOF
2898  # The normal chain of rules is (  .F - .$FS - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )
2899    
2900  ## This nullifies any default implicit rules concerning these two file types:  ## This nullifies any default implicit rules concerning these two file types:
2901  %.o : %.F  ## %.o : %.F
2902    
2903    # C preprocessing and replacing the _d in constants:
2904    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
2905    
2906  .F.$FS:  .F.$FS:
2907          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
2908  .$FS.o:  .$FS.o:
2909          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2910    .F.o:
2911            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2912  .F90.$FS90:  .F90.$FS90:
2913          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
2914  .FF90.f$FS90:  .FF90.f$FS90:
2915          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
2916  .$FS90.o:  .$FS90.o:
2917          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2918  .f$FS90.o:  .f$FS90.o:
# Line 2700  cat >>$MAKEFILE <<EOF Line 2921  cat >>$MAKEFILE <<EOF
2921  .c.o:  .c.o:
2922          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2923  .flow.flowdir:  .flow.flowdir:
2924          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
2925    
2926  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2927  .F.p:  .F.p:
2928          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
2929  .p.$FS:  .p.$FS:
2930          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2931    
# Line 2714  EOF Line 2935  EOF
2935  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2936  #===  for TAMC/TAF  ======================  #===  for TAMC/TAF  ======================
2937    
2938  if test "x$OPENAD" == x ; then  if test "x$OPENAD" = x ; then
2939    
2940  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2941    
# Line 2751  rm -f adSrcFiles.tmp Line 2972  rm -f adSrcFiles.tmp
2972  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2973    
2974  # ... AD ...  # ... AD ...
2975  adall: \$(EXE_AD)  adall: ad_exe_target
2976  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
2977  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
2978    
2979  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)  ad_exe_target:
2980          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @echo Update AD_CONFIG.h and make \$(EXE_AD)
2981            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2982            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2983            @-rm -f ad_config.template
2984            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
2985    
2986    ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
2987            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2988          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2989          -rm -f ad_config.template          @-rm -f ad_config.template
2990          @make \$(F77_PP_SRC_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
2991          @make \$(FLOFILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
2992          cat \$(FLOFILES) \$(AD_FILES) > ad_input_code.$FS          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
2993    
2994  ad_taf_output.$FS: ad_input_code.$FS  ad_taf_output.$FS: ad_input_code.$FS
2995          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
# Line 2773  adtafonly: Line 3001  adtafonly:
3001          ls -l ad_input_code_ad.$FS          ls -l ad_input_code_ad.$FS
3002          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3003    
3004  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)  \$(EXE_AD): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ad_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3005          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
3006    
3007  ad_tamc_output.$FS: ad_input_code.$FS  ad_tamc_output.$FS: ad_input_code.$FS
3008          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3009          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3010    
3011  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
3012          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3013    
3014  adonlyfwd:  adonlyfwd:
3015          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3016    
3017  adtrick:  adtrick:
3018          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3019    
3020    adobj: ad_taf_output.o \$(OBJFILES)
3021    
3022  # ... FTL ...  # ... FTL ...
3023  ftlall: ftl_taf  ftlall: ftl_exe_target
3024  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
3025  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
3026    
3027  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)  ftl_exe_target:
3028          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3029          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3030          -rm -f ftl_config.template          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3031          @make \$(F77_PP_SRC_FILES)          @-rm -f ad_config.template
3032          @make \$(AD_FLOW_FILES)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3033          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS  
3034    ftl_input_code.$FS: \$(AD_FILES)
3035            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3036            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3037            @-rm -f ad_config.template
3038            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3039            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3040            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3041    
3042  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_taf_output.$FS: ftl_input_code.$FS
3043          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
# Line 2812  ftltafonly: Line 3049  ftltafonly:
3049          ls -l ftl_input_code_ftl.$FS          ls -l ftl_input_code_ftl.$FS
3050          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3051    
3052  ftl_taf: ftl_taf_output.o \$(OBJFILES)  \$(EXE_FTL): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ftl_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3053          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
3054    
3055  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
3056          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3057          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3058    
3059  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3060          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
3061    
3062  # ... SVD ...  # ... SVD ...
3063  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
# Line 2843  svd_touch: Line 3079  svd_touch:
3079          touch ad_taf_output.$FS ftl_taf_output.$FS          touch ad_taf_output.$FS ftl_taf_output.$FS
3080          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3081          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3082          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3083          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3084          -rm -f ftl_config.template          @-rm -f ad_config.template
3085    
3086  EOF  EOF
3087    
3088  fi  fi
3089    
3090  #===  for OpenAD  ========================  #===  for OpenAD  ========================
3091    
3092  if test "x$OPENAD" != x ; then  if test "x$OPENAD" != x ; then
3093    
3094  # ============ begin OpenAD specific section ==============  # ============ begin OpenAD specific section ==============
3095    
3096  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3097    
3098  # all the source files linked from the various locations:  # all the source files linked from the various locations:
3099  ALL_LINKED_FILES= \  ALL_LINKED_FILES= \
3100  \$(F77_SRC_FILES) \  \$(F77_SRC_FILES) \
3101  \$(C_SRC_FILES) \  \$(C_SRC_FILES) \
# Line 2911  rm -f adSrcFiles.tmp Line 3147  rm -f adSrcFiles.tmp
3147    
3148  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3149    
3150  adAll: \$(EXE_AD)  adAll: \$(EXE_AD)
3151  .PHONY: adAll  .PHONY: adAll
3152    
3153  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
# Line 2920  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod. Line 3156  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.
3156    
3157  .PHONY: adDepend  .PHONY: adDepend
3158  adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)  adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3159          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3160          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3161          -rm -f makedepend.out          -rm -f makedepend.out
3162    
# Line 2929  w2f__types.F90 \ Line 3165  w2f__types.F90 \
3165  OAD_active.F90 \  OAD_active.F90 \
3166  OAD_cp.F90 \  OAD_cp.F90 \
3167  OAD_rev.F90 \  OAD_rev.F90 \
3168  OAD_tape.F90          OAD_tape.F90
3169    
3170  OPENAD_SUPPORT_C_SRC_FILES = \  OPENAD_SUPPORT_C_SRC_FILES = \
3171  iaddr.c \  iaddr.c \
# Line 2938  timeRatio.c Line 3174  timeRatio.c
3174  f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)  f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3175          cat \$^ > \$@          cat \$^ > \$@
3176    
3177  f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.canon.xb.x2w.w2f.rs.pp.f$FS90  f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3178          cat \$^ > \$@          cat \$^ > \$@
3179    
3180  f95_test.out: f95_test_mods.f90 f95_test.f90  f95_test.out: f95_test_mods.f90 f95_test.f90
3181          f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1          f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3182          f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1          f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3183    
3184  AD_OBJ_FILES=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) all_mods.xb.x2w.w2f.pp.o  ad_input_code.w2f.canon.xb.x2w.w2f.rs.pp.o \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)  CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3185    
3186    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3187    
3188  \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(AD_OBJ_FILES)  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
         @echo Creating \$@ ...  
         \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES) \$(LIBS)  
3189    
3190  # makefile debug rule  \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3191  openad: ad_input_code.w2f.canon.xb.x2w.w2f.rs.pp.f$FS90          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3192  .PHONY: openad  
3193    # create sources files modules from header files containing common blocks
3194    %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3195            \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3196    
3197  # create the module files  # create new header files with USE statements for the new modules made above
3198  %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk  %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3199          ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk          \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3200    
3201  # create the header files  # change the include directives of everybody to refer to  the new header files with the USE statements
3202  %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk  %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3203          ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)          \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
   
 # change everybody else to use the new module files:  
 %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash  
         ../OAD_support/cb2mUseModules.bash $< ${MPI}  
3204    
3205  # makefile debug rule  # makefile debug rule
3206  small_f: \$(CB2M_F90_PP_SRC_FILES)  small_f: \$(CB2M_F90_PP_SRC_FILES)
# Line 2978  ad_output.txt: \$(EXE_AD) Line 3213  ad_output.txt: \$(EXE_AD)
3213          @printf 'running ... '          @printf 'running ... '
3214          @./\$(EXE_AD) > \$@          @./\$(EXE_AD) > \$@
3215    
3216  CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
 ad_input_code.f$FS90: ../OAD_support/maxMinDefs.f \$(CB2M_AD_FILES)  
3217          cat \$^ > \$@          cat \$^ > \$@
3218    
 # strip all comments and blanks to reduce  
 # the file size in order to reduce perl's memory requirements  
 ad_input_code_sf.f$FS90 : ad_input_code.f$FS90  
         cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@  
   
 # mfef90 preprocessing  
 # expand statement functions  
 # expose mfef90 specific substring handling  
 # add the w2f__types module  
 ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90  
         ./mfef90 -r8 -z -F -N132 \$<  
         mv \$<.B \$(basename \$<).B  
         ./whirl2f -openad \$(basename \$<).B  
         cat w2f__types.f90 \$(basename \$<).w2f.f > \$@  
   
3219  # canonicalizer  # canonicalizer
3220  ad_input_code_sf.w2f.canon.f$FS90: ad_input_code_sf.w2f.f$FS90 canon.v1.py  ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3221          python canon.v1.py --r8 \$< > \$@          \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3222    
3223    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3224    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3225            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3226    
3227  # F -> WHIRL  # F -> WHIRL
3228  # note that the canonicalized version cuts off at col 72  ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3229  # doing this also for string constants which is ok as long          \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
 # as we are in fixed mode and cut of exactly there.  
 # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)  
 # characters respectively.  
 ad_input_code_sf.w2f.canon.B: ad_input_code_sf.w2f.canon.f$FS90 mfef90  
         ./mfef90 -r8 -z -F \$<  
         mv \$<.B \$@  
3230    
3231  # WHIRL -> XAIF  # WHIRL -> XAIF
3232  ad_input_code_sf.w2f.canon.xaif : ad_input_code_sf.w2f.canon.B whirl2xaif  ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3233          ./whirl2xaif -s -n --debug 1 -o \$@ \$<          \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3234    
3235  # XAIF -> XAIF'  # XAIF -> XAIF'
3236  ad_input_code_sf.w2f.canon.xb.xaif : ad_input_code_sf.w2f.canon.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd openad_adm  ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3237          ./openad_adm -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r          \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3238    
3239  # XAIF' -> WHIRL'  # XAIF' -> WHIRL'
3240  ad_input_code_sf.w2f.canon.xb.x2w.B : ad_input_code_sf.w2f.canon.xb.xaif xaif2whirl  ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3241          ./xaif2whirl --debug 1 --structured ad_input_code_sf.w2f.canon.B \$<          \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3242    
3243  # WHIRL' -> F'  # WHIRL' -> F'
3244  ad_input_code_sf.w2f.canon.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.canon.xb.x2w.B whirl2f whirl2f_be  ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3245          ./whirl2f -FLIST:ftn_file=\$@ -openad \$<          \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3246    
 # undo slice hiding  
3247  # insert template directives  # insert template directives
3248  ad_input_code_sf.w2f.canon.xb.x2w.w2f.rs.f$FS90: ad_input_code_sf.w2f.canon.xb.x2w.w2f.f$FS90 reslicer.py ../OAD_support/insertTemplateDir.bash  ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3249          python reslicer.py \$< > \$<.1          \${OADTOOLS}/insertTemplateDir.bash \$< \$@
         ../OAD_support/insertTemplateDir.bash \$<.1  \$@  
         rm \$<.1  
3250    
3251    PPEXTRAS=\$(wildcard \${OADTOOLS}/ad_template.*.F) \${OADTOOLS}/ad_inline.F
3252  # postprocess F'  # postprocess F'
3253  ad_input_code_sf.w2f.canon.xb.x2w.w2f.rs.pp.f$FS90: ad_input_code_sf.w2f.canon.xb.x2w.w2f.rs.f$FS90 multi-pp.pl ../OAD_support/ad_inline.f \$(wildcard ../OAD_support/ad_template.*.f)  postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3254          perl multi-pp.pl -inline=../OAD_support/ad_inline.f \$<          \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i \${OADTOOLS}/ad_inline.f \$<
3255          # the postprocessor still gets the name wrong          # the target is a placeholder to trigger a single execution of the rule
3256          cat \$<.pp | sed 's/RETURN//' > \$@          touch \$@
3257    # put this so make knows about the postprocessing output
3258  # extract all transformed modules  OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
 all_mods.xb.x2w.w2f.pp.f$FS90: ad_input_code_sf.w2f.canon.xb.x2w.w2f.rs.pp.f$FS90  
         cat \$< | sed -n '/MODULE /,/END MODULE/p' > \$@  
   
 # remove the transformed globals module from the  
 # transformed ad_input_code file  
 # and remove for now the duplicate variables  
 # and fix 2 data statements  
 ad_input_code.w2f.canon.xb.x2w.w2f.rs.pp.f$FS90: ad_input_code_sf.w2f.canon.xb.x2w.w2f.rs.pp.f$FS90  
         cat \$< | sed '/MODULE /,/END MODULE/d' | sed '/^      INTEGER(w2f__i4) DOLOOP_UB/d' > \$@  
3259    
3260  # setup some links  # link the XAIF schema files
3261  %.xsd:  %.xsd:
3262          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3263    
 mfef90:  
         \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .  
   
3264  # link the support files:  # link the support files:
3265  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3266          \$(LN) ../OAD_support/\$@ .          \$(LN) \${OADTOOLS}/\$@ .
   
 whirl2xaif xaif2whirl:  
         \$(LN) \${OPENADFORTTK}/bin/\$@ .  
   
 %.pl:  
         \$(LN) \${OPENADFORTTK}/bin/\$@ .  
3267    
3268  %.py:  AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag oadtempflile \$(PPEXTRAS:.F=.f)
         \$(LN) \${OPENADROOT}/OpenADFortTk/tools/canonicalize/\$@ .  
   
 whirl2f whirl2f_be:  
         \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .  
   
 openad_adm:  
         \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/test/t \$@  
3269    
3270  # ============ end OpenAD specific section ==============  # ============ end OpenAD specific section ==============
3271    
# Line 3120  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3310  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3310  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3311    
3312  # Create special header files  # Create special header files
3313  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3314  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3315      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3316  else  else
# Line 3134  else Line 3324  else
3324      fi      fi
3325  fi  fi
3326  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3327      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3328  fi  fi
3329    
   
3330  #  Write the "state" for future records  #  Write the "state" for future records
3331  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3332      printf "" > genmake_state      printf "" > genmake_state
3333      for i in $gm_state ; do      for i in $gm_state ; do
3334          t1="t2=\$$i"          t1="t2=\$$i"
3335          eval $t1          eval $t1
3336          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3337      done      done
3338  fi  fi

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