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revision 1.23 by edhill, Fri Oct 24 05:52:05 2003 UTC revision 1.257 by jmc, Sun Aug 11 05:01:47 2013 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
173  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
175      cpp_options=$1      cpp_options=$1
176      pkg=$2      pkg=$2
177      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
178      RETVAL=$?      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
179      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
180          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
181          exit 99  }
182      fi  
183      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1  # Search for particular CPP #cmds associated with MPI
184      RETVAL=$?  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
185      if test "x${RETVAL}" = x0 ; then  test_for_mpi_in_cpp_eeoptions() {
186          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"      cpp_options=$1
187          exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
188      fi      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
189      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1  }
190    
191    # Search for particular string in a file. Return 1 if detected, 0 if not
192    # usage: test_for_string_in_file file string
193    test_for_string_in_file() {
194        file=$1
195        strng=$2
196        grep "$strng" $file > /dev/null 2>&1
197      RETVAL=$?      RETVAL=$?
198      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
199          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
200            grep -i "$strng" $file
201          exit 99          exit 99
202      fi      fi
203      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
204  }  }
205    
206  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
207  # the package list.  # the package list.
208  expand_pkg_groups() {  expand_pkg_groups() {
209      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
210      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
211          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
212          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
# Line 54  expand_pkg_groups() { Line 217  expand_pkg_groups() {
217              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
218                  matched=1                  matched=1
219                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
220                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
221                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
222              else              else
223                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
# Line 62  expand_pkg_groups() { Line 225  expand_pkg_groups() {
225          done          done
226          PACKAGES=$new_packages          PACKAGES=$new_packages
227          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
228            return $matched
229      else      else
230          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
231      fi      fi
232  }  }
233    
234  # Guess possible config options for this host  #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
235  find_possible_configs()  {  #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
236    check_for_broken_Ff()  {
237        #  Do we have defaults for $FS and/or $FS90 ?
238        tfs=f
239        tfs9=f90
240        if test "x$FS" != x ; then
241            tfs="$FS"
242        fi
243        if test "x$FS90" != x ; then
244            tfs9="$FS90"
245        fi
246    
247      tmp1=`uname`"_"`uname -m`      #  First check the ability to create a *.F/.f pair.
248      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat <<EOF >> genmake_hello.F
249      PLATFORM=`echo $tmp2 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`        program hello
250      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`        write(*,*) 'hi'
251      echo "  The platform appears to be:  $PLATFORM"        stop
252  #     if test "x$OFLIST" = x ; then        end
253  #       echo "  No pre-defined options files were found matching this platform"  EOF
254  #       echo "  but examples for other platforms can be found in:"      cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
       
     echo "test" > test  
     ln -s ./test link  
255      RETVAL=$?      RETVAL=$?
256      if test "x${RETVAL}" = x0 ; then      if test "x$RETVAL" != x0 ; then
257          LN="ln -s"          if test "x$FS" = x ; then
258                FS='for'
259                FS90='fr9'
260                check_for_broken_Ff
261            else
262                cat <<EOF 2>&1
263    ERROR: Your file system cannot distinguish between *.F and *.f files
264      (fails the "cp" test) and this program cannot find a suitable
265      replacement extension.  Please try a different build environment or
266      contact the <MITgcm-support@mitgcm.org> list for help.
267    
268    EOF
269                exit -1
270            fi
271            return
272        fi
273        rm -f genmake_hello.*
274    
275        #  Check the ability of ${MAKE} and ${LN} to use the current set
276        #  of extensions.
277        cat <<EOF >> genmake_hello.F
278          program hello
279          write(*,*) 'hi'
280          stop
281          end
282    EOF
283        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
284        cat <<EOF >> $MAKEFILE
285    .SUFFIXES:
286    .SUFFIXES: .$tfs .F
287    .F.$tfs:
288            $LN \$< \$@
289    EOF
290        $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
291        RETVAL=$?
292        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
293            if test "x$FS" = x ; then
294                FS='for'
295                FS90='fr9'
296                check_for_broken_Ff
297            else
298                echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
299                echo "       see simple makefile: '$MAKEFILE' (left here)"
300                echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
301                echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
302                echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
303                echo ""
304                exit -1
305                return
306            fi
307        fi
308        rm -f genmake_hello.* $MAKEFILE
309        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
310    
311        #  If we make it here, use the extensions
312        FS=$tfs
313        FS90=$tfs9
314        return
315    }
316    
317    look_for_makedepend()  {
318    
319        #  The "original" makedepend is part of the Imake system that is
320        #  most often distributed with XFree86 or with an XFree86 source
321        #  package.  As a result, many machines (eg. generic Linux) do not
322        #  have a system-default "makedepend" available.  For those
323        #  systems, we have two fall-back options:
324        #
325        #    1) a makedepend implementation shipped with the cyrus-imapd
326        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
327        #    2) a local tools/xmakedepend shell script
328        #
329        #  So the choices are, in order:
330        #    1) use the user-specified program
331        #    2) use the local xmakedepend script (get all dependencies, but slower)
332        #    3) use a system-wide default
333        #    4) locally build and use the cyrus makedepend
334        #             (faster, but can miss some dependencies)
335        #
336        echo >> $LOGFILE
337        echo "running: look_for_makedepend()" >> $LOGFILE
338        if test "x${MAKEDEPEND}" != x ; then
339            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
340            RETVAL=$?
341            if test x"$RETVAL" = x0 ; then
342                build_cyrus_makedepend
343                RETVAL=$?
344                if test "x$RETVAL" != x0 ; then
345                    echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
346                    MAKEDEPEND=
347                fi
348            else
349                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
350                RETVAL=$?
351                if test "x$RETVAL" = x0 ; then
352                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
353                fi
354                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
355            fi
356        fi
357        if test "x${MAKEDEPEND}" = x ; then
358            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
359            #  echo 'MAKEFILE="'$MAKEFILE'"'
360            cat <<EOF >> $MAKEFILE
361    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
362    #
363    #   Some "makedepend" implementations will die if they cannot
364    #   find a Makefile -- so this file is here to gives them an
365    #   empty one to find and parse.
366    EOF
367            cat <<EOF >> genmake_tc.f
368          program test
369          write(*,*) 'test'
370          stop
371          end
372    EOF
373            $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
374            RV1=$?
375            which makedepend > /dev/null 2>&1
376            RV2=$?
377            if test "x${RV2}" = x0 ; then
378                makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
379                RV3=$? ; loc_msg='not working.'
380            else RV3=$RV2 ; loc_msg='not found.'
381            fi
382            test -f $MAKEFILE  &&  rm -f $MAKEFILE
383            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
384            echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
385            if test "x${RV1}" = x0 ; then
386                MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
387                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
388            elif test "x${RV3}" = x0 ; then
389                echo "    local tools/xmakedepend not working. Use system-default makedepend"
390                MAKEDEPEND=makedepend
391                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392            else
393                echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
394                echo -n "    Try to build cyrus-makedepend ..."
395                #  Try to build the cyrus implementation
396                build_cyrus_makedepend
397                RETVAL=$?
398                if test "x$RETVAL" = x0 ; then
399                    echo "  Works"
400                else
401                    echo "  Fails" ; echo "" >> $LOGFILE
402                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
403                    echo ""
404                    exit -1
405                    return
406                fi
407            fi
408        fi
409    }
410    
411    build_cyrus_makedepend()  {
412        echo >> $LOGFILE
413        echo "running: build_cyrus_makedepend()" >> $LOGFILE
414        rm -f ./genmake_cy_md
415        (
416            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
417                &&  ./configure > /dev/null 2>&1  \
418                &&  $MAKE > /dev/null 2>&1
419            if test -x ./makedepend.exe ; then
420                $LN ./makedepend.exe ./makedepend
421            fi
422            ./makedepend ifparser.c > /dev/null 2>&1  \
423                &&  echo "true"
424        ) > ./genmake_cy_md
425        grep true ./genmake_cy_md > /dev/null 2>&1
426        RETVAL=$?
427        rm -f ./genmake_cy_md
428        if test "x$RETVAL" = x0 ; then
429            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
430            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
431            return 0
432      else      else
433          echo "Error: \"ln -s\" does not appear to work on this system!"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
434          echo "  For help, please contact <MITgcm-support@mitgcm.org>."          return 1
         exit 1  
435      fi      fi
436      rm -f test link  }
437    
438      if test "x$CPP" = x ; then  build_embed_encode()
439          CPP="cpp -traditional -P"  {
440        printf "  building the embed-encode utility...  "
441        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
442            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
443                echo
444                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
445                echo
446                EMBED_SRC=f
447                return 1
448            fi
449            clist="cc gcc c89 $CC"
450            for ic in $clist ; do
451                comm="$ic -o encode_files encode_files.c"
452                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
453                RETVAL=$?
454                if test "x$RETVAL" = x0 ; then
455                    echo "OK"
456                    return 0
457                fi
458            done
459            echo
460            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
461            echo "      so it has been disabled"
462            echo
463            EMBED_SRC=f
464            return 1
465      fi      fi
466        echo "OK"
467    }
468    
469      # look for possible fortran compilers  #  look for possible C compilers
470      tmp="$MITGCM_FC $FC g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"  look_for_C_compilers() {
471      p_FC=      echo >> $LOGFILE
472        echo "running: look_for_C_compilers()" >> $LOGFILE
473        rm -f ./genmake_hello.c  ./genmake_hello
474        cat >> genmake_hello.c << EOF
475    #include <stdio.h>
476    int main(int argc, char **argv) {
477      printf("Hello!\n");
478      return 0;
479    }
480    EOF
481        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
482        p_CC=
483      for c in $tmp ; do      for c in $tmp ; do
484          rm -f ./hello.f ./hello          COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
485          cat >> hello.f <<EOF          echo $COMM >> $LOGFILE
486            $COMM >> $LOGFILE 2>&1
487            RETVAL=$?
488            if test "x${RETVAL}" = x0 ; then
489                echo " $c test successful" >> $LOGFILE
490                p_CC="$p_CC $c"
491            fi
492        done
493        rm -f ./genmake_hello.c ./genmake_hello
494        if test "x${p_CC}" = x ; then
495            cat 1>&2 <<EOF
496    
497    Error: No C compilers were found in your path.  Please specify one using:
498    
499        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
500        2) the CC or MITGCM_CC environment variables.
501    
502    EOF
503            exit 1
504        else
505            echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
506            if test "x$CC" = x ; then
507                CC=`echo $p_CC | $AWK '{print $1}'`
508                echo "  Setting C compiler to: "$CC
509            fi
510        fi
511        echo " --> set CC='$CC'" >> $LOGFILE
512    }
513    
514    # Guess possible config options for this host
515    find_possible_optfile()  {
516    
517        echo >> $LOGFILE
518        echo "running: find_possible_optfile()" >> $LOGFILE
519        tmp1=`uname`"_"`uname -m`
520        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
521        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
522        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
523        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
524        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
525        PLATFORM=$tmp3
526        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
527        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
528        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
529    
530        #================================================================
531        #  look for possible FORTRAN compilers
532        echo "  look for possible FORTRAN compilers" >> $LOGFILE
533        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
534        p_FC=
535        rm -f ./genmake_hello.f
536        cat >> genmake_hello.f <<EOF
537        program hello        program hello
538        do i=1,3        do i=1,3
539          print *, 'hello world : ', i          print *, 'hello world : ', i
540        enddo        enddo
541        end        end
542  EOF  EOF
543          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
544            COMM="$f -o genmake_hello genmake_hello.f"
545            echo $COMM >> $LOGFILE
546            $COMM >> $LOGFILE 2>&1
547          RETVAL=$?          RETVAL=$?
548          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
549              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
550                p_FC="$p_FC $f"
551          fi          fi
552      done      done
553      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
554      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
555          cat 1>&2 <<EOF          cat 1>&2 <<EOF
556    
# Line 129  Error: No Fortran compilers were found i Line 558  Error: No Fortran compilers were found i
558    
559      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
560      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
561      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
562    
563  EOF  EOF
564          exit 1          exit 1
565      else      else
566          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
         if test "x$FC" = x ; then  
             FC=`echo $p_FC | $AWK '{print $1}'`  
         fi  
567      fi      fi
568    
569      for i in $p_FC ; do      #  Use the first of the compilers found in the current PATH
570          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i      #  that has a correctly-named optfile
571          if test -r $p_OF ; then      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
572              OPTFILE=$p_OF          for i in $p_FC ; do
573              echo "  The options file:  $p_OF"              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
574              echo "    appears to match so we'll use it."              if test -r $OPTFILE ; then
575              break                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
576                    break
577                fi
578            done
579        fi
580    
581        if test "x$OPTFILE" = x ; then
582            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
583            if test ! -r $OPTFILE ; then
584                 echo "  I looked for the file "$OPTFILE" but did not find it"
585          fi          fi
586      done      fi
587    
588      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
589          cat 1>&2 <<EOF          cat 1>&2 <<EOF
590    
# Line 165  Error: No options file was found in:  $R Line 600  Error: No options file was found in:  $R
600  EOF  EOF
601          exit 1          exit 1
602      fi      fi
603        }
 #     # look for possible MPI libraries  
 #     mpi_libs=  
 #     mpi_fort=`which mpif77 2>/dev/null`  
 #     RETVAL=$?  
 #     if test "x${RETVAL}" = x0 ; then  
 #       cat >>test.f <<EOF  
 #       PROGRAM HELLO  
 #       DO 10, I=1,10  
 #       PRINT *,'Hello World'  
 #    10 CONTINUE  
 #       STOP  
 #       END  
 # EOF  
 #       eval "$mpi_fort -showme test.f > out"  
 #       RETVAL=$?  
 #       if test "x${RETVAL}" = x0 ; then  
 #           a=`cat out`  
 #           for i in $a ; do  
 #               case $i in  
 #                   -*)  
 #                       mpi_libs="$mpi_libs $i" ;;  
 #               esac  
 #           done  
 #           echo "The MPI libs appear to be:"  
 #           echo "  "$mpi_libs  
 #       fi  
 #       rm -f test.f out  
 #     fi  
604    
605    #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
606    #  checking for additional included headers (in case of chain of included header)
607    mpi_headers_do_local_copy() {
608    
609        dBug=0
610        rm -rf ./mpi_headers
611        if test -d $MPIINCLUDEDIR ; then
612    
613            #----- check for additional headers (chain of included headers)
614            echo -n '  Check MPI headers ... '
615            listIni=$MPI_HEADER_FILES
616            echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
617            outp=$?
618            #- always check mpif.h (the only mpi-header included in standard MITgcm code)
619            if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
620            if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
621    
622            doCheck=1 ; list2copy='' ; list2check=$listIni
623            while test $doCheck = 1 ; do
624              newList=''
625              for i in $list2check ; do
626                if test -f $MPIINCLUDEDIR/$i ; then
627                  newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
628                    sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
629                  if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
630                  for j in $newInc ; do
631                    echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
632                    outp=$?
633                    if test $outp != 0 ; then
634                      if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
635                      newList="$newList $j"
636                    fi
637                  done
638                  if test $dBug = 1 ; then echo "" ; fi
639                fi
640              done
641              if test "x$newList" = x ; then doCheck=0
642              else list2check=$newList ; list2copy="$list2copy $newList"
643              fi
644            done
645            list2copy="$MPI_HEADER_FILES $list2copy"
646            if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
647    
648            #----- create local mpi_headers dir if we have files to copy
649            mkListInc=`echo $list2copy | wc -w`
650            if test $mkListInc != 0 ; then
651              echo 'create local "./mpi_headers" dir'
652              mkdir -p ./mpi_headers
653              INCLUDES="-I./mpi_headers $INCLUDES"
654              mkListInc=1
655            fi
656            if test "x$LOCAL_MPI_HEADERS" != x ; then mkListInc=0 ; fi
657    
658            #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
659            for i in $list2copy ; do
660              if test -f $MPIINCLUDEDIR/$i ; then
661                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
662                if test $i = 'mpif.h' ; then
663                    perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
664                fi
665                if test $mkListInc = 2 ; then
666                    LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
667                fi
668                if test $mkListInc = 1 ; then
669                    LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=2
670                fi
671              fi
672            done
673        else
674            echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a directory"
675            echo "WARNING: => skip checking for MPI headers (no ./mpi_headers dir)"
676    #       exit -1
677        fi
678  }  }
679    
680  #  Parse the package dependency information  #  Parse the package dependency information
# Line 203  get_pdepend_list()  { Line 683  get_pdepend_list()  {
683      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
684      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
685      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
686          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
687          > ./.pd_tmp          > ./.pd_tmp
688      source ./.pd_tmp      RETVAL=$?
689        if test ! "x${RETVAL}" = x0 ; then
690          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
691          exit 1
692        fi
693        . ./.pd_tmp
694      rm -f ./.pd_tmp      rm -f ./.pd_tmp
695    }
696    
697    #  Build a CPP macro to automate calling C routines from FORTRAN
698    get_fortran_c_namemangling()  {
699    
700        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
701        if test ! "x$FC_NAMEMANGLE" = x ; then
702            return 0
703        fi
704        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
705    
706        default_nm="#define FC_NAMEMANGLE(X) X ## _"
707    
708        cat > genmake_test.c <<EOF
709    void tcall( char * string ) { tsub( string ); }
710    EOF
711        COMM="$CC $CFLAGS -c genmake_test.c"
712        echo ' '$COMM >> $LOGFILE
713        $COMM >> $LOGFILE 2>&1
714        RETVAL=$?
715        if test "x$RETVAL" != x0 ; then
716            FC_NAMEMANGLE=$default_nm
717            cat <<EOF>> $LOGFILE
718    
719      echo -n "PNAME = "${}   WARNING: C test compile fails
720     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
721     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
722    EOF
723            return 1
724        fi
725        c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
726        RETVAL=$?
727        if test "x$RETVAL" != x0 ; then
728            FC_NAMEMANGLE=$default_nm
729            cat <<EOF>> $LOGFILE
730    
731     WARNING: The "nm" command failed.
732     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
733     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
734    EOF
735            return 1
736        fi
737        cat > genmake_tcomp.$FS <<EOF
738          subroutine tcall( string )
739          character*(*) string
740          call tsub( string )
741          end
742    EOF
743        COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
744        echo ' '$COMM >> $LOGFILE
745        $COMM >> $LOGFILE 2>&1
746        RETVAL=$?
747        if test "x$RETVAL" != x0 ; then
748            FC_NAMEMANGLE=$default_nm
749            cat <<EOF>> $LOGFILE
750    
751     WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
752     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
753     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
754    EOF
755            return 1
756        fi
757        f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
758        RETVAL=$?
759        if test "x$RETVAL" != x0 ; then
760            FC_NAMEMANGLE=$default_nm
761            cat <<EOF>> $LOGFILE
762    
763     WARNING: The "nm" command failed.
764     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
765     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
766    EOF
767            return 1
768        fi
769    
770        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
771        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
772        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
773        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
774    
775        nmangle="X"
776        if test "x$c_a" != "x$f_a" ; then
777            comm="echo x$f_a | sed -e 's|x$c_a||'"
778            a=`eval $comm`
779            nmangle="$a ## $nmangle"
780        fi
781        if test "x$c_b" != "x$f_b" ; then
782            comm="echo x$f_b | sed -e 's|x$c_b||'"
783            b=`eval $comm`
784            nmangle="$nmangle ## $b"
785        fi
786    
787        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
788    
789        #  cleanup the testing files
790        rm -f genmake_tcomp.* genmake_test.*
791    
792        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
793  }  }
794    
795    check_HAVE_CLOC()  {
796        echo >> $LOGFILE
797        echo "running: check_HAVE_CLOC()" >> $LOGFILE
798        get_fortran_c_namemangling
799        cat <<EOF > genmake_tc_1.c
800    $FC_NAMEMANGLE
801    #include <stdio.h>
802    #include <stdlib.h>
803    #include <unistd.h>
804    #include <assert.h>
805    #include <sys/time.h>
806    void FC_NAMEMANGLE(cloc) ( double *curtim )
807    {
808     struct timeval tv1;
809     gettimeofday(&tv1 , (void *)NULL );
810     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
811     *curtim = *curtim/1.E6;
812    }
813    EOF
814        COMM="$CC $CFLAGS -c genmake_tc_1.c"
815        echo $COMM >> $LOGFILE
816        $COMM >> $LOGFILE 2>&1
817        RET_C=$?
818        cat <<EOF > genmake_tc_2.$FS
819          program hello
820          REAL*8 wtime
821          external cloc
822          call cloc(wtime)
823          print *," HELLO WORLD", wtime
824          end
825    EOF
826        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
827        echo $COMM >> $LOGFILE
828        $COMM >> $LOGFILE 2>&1
829        RET_F=$?
830        test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
831        RETVAL=$?
832        if test "x$RETVAL" = x0 ; then
833            HAVE_CLOC=t
834        fi
835        rm -f genmake_tc*
836        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
837    }
838    
839  #  Explain usage  check_HAVE_SIGREG()  {
840  usage()  {      if test ! "x$HAVE_SIGREG" = x ; then
841      echo          return
842      echo "Usage: "$0" [OPTIONS]"      fi
843      echo "  where [OPTIONS] can be:"      echo >> $LOGFILE
844      echo      echo "running: check_HAVE_SIGREG()" >> $LOGFILE
845      echo "    -help | --help | -h | --h"      get_fortran_c_namemangling
846      echo "    -nooptfile | --nooptfile"      cat <<EOF > genmake_tc_1.c
847      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"  $FC_NAMEMANGLE
848      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  #include <stdlib.h>
849      echo "    -pdepend NAME | --pdepend NAME"  #include <stdio.h>
850      echo "      -pdepend=NAME | --pdepend=NAME"  #include <signal.h>
851      echo "    -pdefault NAME | --pdefault NAME"  #include <errno.h>
852      echo "      -pdefault=NAME | --pdefault=NAME"  #include <ucontext.h>
853      echo "    -make NAME | -m NAME"  
854      echo "      --make=NAME | -m=NAME"  int * ip;
855      echo "    -makefile NAME | -mf NAME"  
856      echo "      --makefile=NAME | -mf=NAME"  static void killhandler(
857      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"      unsigned int sn, siginfo_t  si, struct ucontext *sc )
858      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"  {
859      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"      *ip = *ip + 1;
860      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"      return;
861      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"  }
862      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"  
863      echo "    -disable NAME | --disable NAME"  void FC_NAMEMANGLE(sigreg) (int * aip)
864      echo "      -disable=NAME | --disable=NAME"  {
865      echo "    -enable NAME | --enable NAME"      struct sigaction s;
866      echo "      -enable=NAME | --enable=NAME"      ip = aip;
867      echo "    -standarddirs NAME | --standarddirs NAME"      s.sa_flags = SA_SIGINFO;
868      echo "      -standarddirs=NAME | --standarddirs=NAME"      s.sa_sigaction = (void *)killhandler;
869      echo "    -noopt NAME | --noopt NAME"      if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
870      echo "      -noopt=NAME | --noopt=NAME"          printf("Sigaction returned error = %d\n", errno);
871  #    echo "    -cpp NAME | --cpp NAME"          exit(0);
872  #    echo "      -cpp=NAME | --cpp=NAME"      }
873      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"      return;
874      echo "      -fc=NAME | --fc=NAME"  }
875      echo "    -[no]ieee | --[no]ieee"  EOF
876      echo "    -[no]mpi | --[no]mpi"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
877      echo "    -[no]jam | --[no]jam"      echo $COMM >> $LOGFILE
878      echo      $COMM >> $LOGFILE 2>&1
879      echo "  and NAME is a string such as:"      RET_C=$?
880      echo      cat <<EOF > genmake_tc_2.$FS
881      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"        program hello
882      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"        integer anint
883      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"        common /iv/ anint
884      echo        external sigreg
885      echo "  which, depending upon your shell, may need to be single-quoted"        call sigreg(anint)
886      echo "  if it contains spaces, dashes, or other special characters."        end
887      exit 1  EOF
888        cat genmake_tc_2.$FS >> $LOGFILE
889        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
890        echo $COMM >> $LOGFILE
891        $COMM >> $LOGFILE 2>&1
892        RETVAL=$?
893        if test "x$RETVAL" = x0 ; then
894            HAVE_SIGREG=t
895        fi
896        rm -f genmake_tc*
897        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
898    }
899    
900    check_HAVE_SETRLSTK()  {
901        if test ! "x$HAVE_SETRLSTK" = x ; then
902            return
903        fi
904        echo >> $LOGFILE
905        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
906        get_fortran_c_namemangling
907        cat <<EOF > genmake_tc_1.c
908    $FC_NAMEMANGLE
909    #include <sys/time.h>
910    #include <sys/resource.h>
911    #include <unistd.h>
912    void FC_NAMEMANGLE(setrlstk) ()
913    {
914        struct rlimit rls;
915        rls.rlim_cur = RLIM_INFINITY;
916        rls.rlim_max = RLIM_INFINITY;
917        setrlimit(RLIMIT_STACK, &rls);
918        return;
919    }
920    EOF
921        COMM="$CC $CFLAGS -c genmake_tc_1.c"
922        echo $COMM >> $LOGFILE
923        $COMM >> $LOGFILE 2>&1
924        RET_C=$?
925        cat <<EOF > genmake_tc_2.$FS
926          program hello
927          external setrlstk
928          call setrlstk()
929          end
930    EOF
931        cat genmake_tc_2.$FS >> $LOGFILE
932        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
933        echo $COMM >> $LOGFILE
934        $COMM >> $LOGFILE 2>&1
935        RETVAL=$?
936        if test "x$RETVAL" = x0 ; then
937            HAVE_SETRLSTK=t
938        fi
939        rm -f genmake_tc*
940        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
941  }  }
942    
943  #eh3 # This is the generic configuration.  check_HAVE_STAT()  {
944  #eh3 set LN         = ( 'ln -s' )      echo >> $LOGFILE
945  #eh3 set CPP        = ( '/lib/cpp -P' )      echo "running: check_HAVE_STAT()" >> $LOGFILE
946  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      get_fortran_c_namemangling
947  #eh3 set KPP        = (  )      cat <<EOF > genmake_tc_1.c
948  #eh3 set FC         = ( 'f77' )  $FC_NAMEMANGLE
949  #eh3 set LINK       = $FC  #include <stdio.h>
950  #eh3 set MAKEDEPEND = ( 'makedepend' )  #include <stdlib.h>
951  #eh3 set INCLUDES   = ( -I. )  #include <unistd.h>
952  #eh3 set FFLAGS     = (  )  #include <sys/stat.h>
953  #eh3 set FOPTIM     = (  )  #include <sys/types.h>
954  #eh3 set CFLAGS     = (  )  void FC_NAMEMANGLE(tfsize) ( int *nbyte )
955  #eh3 set KFLAGS1    = (  )  {
956  #eh3 set KFLAGS2    = (  )      char name[512];
957  #eh3 set LIBS       = (  )      struct stat astat;
958  #eh3 set KPPFILES   = (  )  
959  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )      name[0] = 'a'; name[1] = '\0';
960  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )      if (! stat(name, &astat))
961            *nbyte = (int)(astat.st_size);
962        else
963            *nbyte = -1;
964    }
965    EOF
966        COMM="$CC $CFLAGS -c genmake_tc_1.c"
967        echo $COMM >> $LOGFILE
968        $COMM >> genmake_tc.log 2>&1
969        RET_C=$?
970        cat <<EOF > genmake_tc_2.$FS
971          program hello
972          integer nbyte
973          call tfsize(nbyte)
974          print *," HELLO WORLD", nbyte
975          end
976    EOF
977        cat genmake_tc_2.$FS >> $LOGFILE
978        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
979        echo $COMM >> $LOGFILE
980        $COMM >> genmake_tc.log 2>&1
981        RETVAL=$?
982        if test "x$RETVAL" = x0 ; then
983            HAVE_STAT=t
984        fi
985        rm -f genmake_tc*
986        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
987    }
988    
989    check_netcdf_libs()  {
990        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
991            return
992        fi
993        echo >> $LOGFILE
994        echo "running: check_netcdf_libs()" >> $LOGFILE
995        cat <<EOF > genmake_tnc.F
996          program fgennc
997    #include "netcdf.inc"
998    EOF
999       #if test ! "x$MPI" = x ; then
1000       #    echo '#include "mpif.h"' >> genmake_tnc.F
1001       #fi
1002        cat <<EOF >> genmake_tnc.F
1003          integer iret, ncid, xid
1004          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
1005          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1006          iret = nf_def_dim(ncid, 'X', 11, xid)
1007          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1008          iret = nf_close(ncid)
1009          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1010          end
1011    EOF
1012        echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
1013        cat genmake_tnc.F >> genmake_tnc.log
1014        echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
1015        RET_CPP=f
1016        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
1017        echo "$COMM" >> genmake_tnc.log
1018        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
1019        if test "x$RET_CPP" = xf ; then
1020            echo "  WARNING: CPP failed to pre-process the netcdf test." \
1021                >> genmake_tnc.log
1022            echo "    Please check that \$INCLUDES is properly set." \
1023                >> genmake_tnc.log
1024        fi
1025        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
1026        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
1027        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1028            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
1029        RET_COMPILE=$?
1030        cat genmake_tnc.log >> $LOGFILE
1031    
1032        #EH3  Remove test program execution for machines that either disallow
1033        #EH3  execution or cannot support it (eg. cross-compilers)
1034        #EH3
1035        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
1036        #EH3 RETVAL=$?
1037        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1038    
1039        if test "x$RET_COMPILE" = x0 ; then
1040            HAVE_NETCDF=t
1041            echo "check_netcdf: successful" >> $LOGFILE
1042        else
1043            # try again with "-lnetcdf" added to the libs
1044            echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1045            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1046            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1047            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1048            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1049                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1050                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1051            RET_COMPILE=$?
1052            echo >> $LOGFILE
1053            cat genmake_tnc.log >> $LOGFILE
1054            if test "x$RET_COMPILE" = x0 ; then
1055                LIBS="$LIBS -lnetcdf"
1056                HAVE_NETCDF=t
1057                echo "check_netcdf: successful" >> $LOGFILE
1058            else
1059            # try again with "-lnetcdff" added to the libs
1060                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1061                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1062                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1063                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1064                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1065                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1066                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1067                RET_COMPILE=$?
1068                echo >> $LOGFILE
1069                cat genmake_tnc.log >> $LOGFILE
1070                if test "x$RET_COMPILE" = x0 ; then
1071                    LIBS="$LIBS -lnetcdff -lnetcdf"
1072                    HAVE_NETCDF=t
1073                    echo "check_netcdf: successful" >> $LOGFILE
1074                fi
1075            fi
1076        fi
1077        rm -f genmake_tnc*
1078        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1079    }
1080    
1081    check_lapack_libs()  {
1082        if test ! "x$SKIP_LAPACK_CHECK" = x ; then
1083            return
1084        fi
1085        echo >> $LOGFILE
1086        echo "running: check_lapack_libs()" >> $LOGFILE
1087        cat <<EOF > genmake_tla.F
1088          program fgenla
1089          integer info
1090          integer ipiv( 2 )
1091          double precision ab( 4, 2 ), b( 2 )
1092          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1093          data b / 1., 1. /
1094          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1095          IF (info .NE. 0) write(*,*) 'Error:', info
1096          write(*,*) b
1097          end
1098    EOF
1099        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1100        cat genmake_tla.F >> genmake_tla.log
1101        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1102        RET_CPP=f
1103        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1104        echo "$COMM" >> genmake_tla.log
1105        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1106        if test "x$RET_CPP" = xf ; then
1107            echo "  WARNING: CPP failed to pre-process the lapack test." \
1108                >> genmake_tla.log
1109            echo "    Please check that \$INCLUDES is properly set." \
1110                >> genmake_tla.log
1111        fi
1112        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1113        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1114        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1115            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1116        RET_COMPILE=$?
1117        cat genmake_tla.log >> $LOGFILE
1118    
1119        # test program execution not always possible (see check_netcdf_libs)
1120        #
1121        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1122        #RETVAL=$?
1123        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1124    
1125        if test "x$RET_COMPILE" = x0 ; then
1126            HAVE_LAPACK=t
1127            echo "check_lapack: successful" >> $LOGFILE
1128        else
1129            # try again with "-llapack" added to the libs
1130            echo "==> try again with added '-llapack'" > genmake_tla.log
1131            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1132            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1133            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1134            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1135                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1136                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1137            RET_COMPILE=$?
1138            echo >> $LOGFILE
1139            cat genmake_tla.log >> $LOGFILE
1140            if test "x$RET_COMPILE" = x0 ; then
1141                LIBS="$LIBS -llapack"
1142                HAVE_LAPACK=t
1143                echo "check_lapack: successful" >> $LOGFILE
1144            else
1145            # try again with "-lf77blas -lcblas" added to the libs
1146                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1147                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1148                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1149                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1150                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1151                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1152                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1153                RET_COMPILE=$?
1154                echo >> $LOGFILE
1155                cat genmake_tla.log >> $LOGFILE
1156                if test "x$RET_COMPILE" = x0 ; then
1157                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1158                    HAVE_LAPACK=t
1159                    echo "check_lapack: successful" >> $LOGFILE
1160                else
1161                # try again with "-latlas" added to the libs
1162                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1163                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1164                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1165                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1166                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1167                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1168                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1169                    RET_COMPILE=$?
1170                    echo >> $LOGFILE
1171                    cat genmake_tla.log >> $LOGFILE
1172                    if test "x$RET_COMPILE" = x0 ; then
1173                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1174                        HAVE_LAPACK=t
1175                        echo "check_lapack: successful" >> $LOGFILE
1176                    fi
1177                fi
1178            fi
1179        fi
1180        rm -f genmake_tla*
1181        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1182    }
1183    
1184    check_HAVE_FLUSH()  {
1185        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1186            return
1187        fi
1188        echo >> $LOGFILE
1189        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1190        cat <<EOF > genmake_tflsh.$FS
1191          program fgenflsh
1192          integer iounit
1193          character*9 fname
1194          iounit = 26
1195          fname = 'tmp.tflsh'
1196          open(iounit,FILE=fname,STATUS='unknown')
1197          write(iounit,*) 'genmake_tflsh: hello'
1198          call flush(iounit)
1199          close(iounit)
1200          end
1201    EOF
1202        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1203        cat genmake_tflsh.$FS >> genmake_tflsh.log
1204        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1205    
1206        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1207        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1208        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1209            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1210        RET_COMPILE=$?
1211    
1212        if test "x$RET_COMPILE" = x0 ; then
1213            HAVE_FLUSH=t
1214            #cat genmake_tflsh.log >> $LOGFILE
1215            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1216        else
1217            HAVE_FLUSH=f
1218            cat genmake_tflsh.log >> $LOGFILE
1219        fi
1220        rm -f genmake_tflsh*
1221        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1222    }
1223    
1224    ###############################################################################
1225    #   Sequential part of script starts here
1226    ###############################################################################
1227    
1228  #  Set defaults here  #  Set defaults here
1229  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 289  PLATFORM= Line 1232  PLATFORM=
1232  LN=  LN=
1233  S64=  S64=
1234  KPP=  KPP=
1235  FC=  #FC=
1236    #CC=gcc
1237    #CPP=
1238  LINK=  LINK=
1239  DEFINES="-DWORDLENGTH=4"  DEFINES=
1240  PACKAGES=  PACKAGES=
1241  ENABLE=  ENABLE=
1242  DISABLE=  DISABLE=
1243  MAKEFILE=  # MAKEFILE=
1244  MAKEDEPEND=  # MAKEDEPEND=
1245  PDEPEND=  PKG_DEPEND=
1246  DUMPSTATE=t  PKG_GROUPS=
1247  PDEFAULT=  DUMPSTATE=f
1248  OPTFILE=  OPTFILE=
1249  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1250  FFLAGS=  FFLAGS=
1251  FOPTIM=  FOPTIM=
1252    FEXTRAFLAGS=
1253    USE_EXTENDED_SRC=
1254    EXTENDED_SRC_FLAG=
1255    GET_FC_VERSION=
1256  CFLAGS=  CFLAGS=
1257  KFLAGS1=  KFLAGS1=
1258  KFLAGS2=  KFLAGS2=
1259    #LDADD=
1260  LIBS=  LIBS=
1261  KPPFILES=  KPPFILES=
1262  NOOPTFILES=  NOOPTFILES=
1263  NOOPTFLAGS=  NOOPTFLAGS=
1264    MPI=
1265    MPIPATH=
1266    OMP=
1267    OMPFLAG=
1268    USE_R4=
1269    TS=
1270    PAPIS=
1271    PCLS=
1272    FOOLAD=
1273    PAPI=
1274    PCL=
1275    HPMT=
1276    GSL=
1277    DEVEL=
1278    HAVE_TEST_L=
1279    
1280    # comment this line out to enable lapack test
1281    SKIP_LAPACK_CHECK=t
1282    
1283    # DEFINES checked by test compilation or command-line
1284    HAVE_SYSTEM=
1285    HAVE_FDATE=
1286    FC_NAMEMANGLE=
1287    HAVE_CLOC=
1288    # HAVE_SETRLSTK=
1289    HAVE_STAT=
1290    HAVE_NETCDF=
1291    HAVE_ETIME=
1292    IGNORE_TIME=
1293    HAVE_LAPACK=
1294    HAVE_FLUSH=
1295    
1296  MODS=  MODS=
1297  TOOLSDIR=  TOOLSDIR=
1298  SOURCEDIRS=  SOURCEDIRS=
1299  INCLUDEDIRS=  INCLUDEDIRS=
1300  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
1301    
1302    #- local config file
1303    gm_local="genmake_local"
1304    
1305    G2ARGS=
1306    BASH=
1307  PWD=`pwd`  PWD=`pwd`
1308  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1309  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1310  THISHOSTNAME=`hostname`  EMBED_SRC=
1311    THISHOST=`hostname`
1312  THISCWD=`pwd`  THISCWD=`pwd`
1313  THISDATE=`date`  THISDATE=`date`
1314    THISUSER=`echo $USER`
1315    THISVER=
1316  MACHINE=`uname -a`  MACHINE=`uname -a`
1317  EXECUTABLE=  EXECUTABLE=
1318  EXEHOOK=  EXEHOOK=
1319  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1320  IEEE=  IEEE=
1321  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1322      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1323  fi  fi
1324    FS=
1325    FS90=
1326    
1327  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1328  AD_OPTFILE=  AD_OPTFILE=
# Line 347  FTL_TAF_FLAGS= Line 1337  FTL_TAF_FLAGS=
1337  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1338  TAMC_EXTRA=  TAMC_EXTRA=
1339    
1340    DIVA=
1341    MPIINCLUDEDIR=
1342    MPI_HEADER_FILES=
1343    LOCAL_MPI_HEADERS=
1344    
1345  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1346  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1347  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1348    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1349    
1350  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1351  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1352  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1353  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1354  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1355    gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1356    
1357  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1358  gm_s7="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1359  gm_s8="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1360  gm_s9="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1361    
1362  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8 $gm_s9"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1363    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1364    
1365    cat <<EOF
1366    
1367    GENMAKE :
1368    
1369    A program for GENerating MAKEfiles for the MITgcm project.
1370       For a quick list of options, use "genmake2 -h"
1371    or for more detail see the Developer's HOWTO manual at:
1372       http://mitgcm.org/public/docs.html
1373    
1374    EOF
1375    
1376    LOGFILE="genmake.log"
1377    #- clean-up previous genmake logfiles:
1378    rm -f genmake_state genmake_*optfile $LOGFILE
1379    
 echo  
1380  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         source $i/$gm_local  
         break  
     fi  
 done  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
     echo "using $gm_local"  
     source $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1381    
1382  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1383  #parse_options  #parse_options
1384  ac_prev=  ac_prev=
1385  for ac_option ; do  for ac_option in "$@" ; do
1386    
1387        G2ARGS="$G2ARGS \"$ac_option\""
1388    
1389      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1390      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 405  for ac_option ; do Line 1392  for ac_option ; do
1392          ac_prev=          ac_prev=
1393          continue          continue
1394      fi      fi
1395        
1396      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1397        
1398      case $ac_option in      case $ac_option in
1399            
1400          -help | --help | -h | --h)          -help | --help | -h | --h)
1401              usage ;;              usage ;;
1402            
1403          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1404              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1405          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1406              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1407          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1408              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1409            
1410          -adoptfile | --adoptfile | -ad | --ad)          -adoptfile | --adoptfile | -adof | --adof)
1411              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1412          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1413              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1414            
1415          -pdepend | --pdepend)          -pdepend | --pdepend)
1416              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1417          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1418              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1419            
1420          -pdefault | --pdefault)          -pgroups | --pgroups)
1421              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1422          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1423              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1424            
1425          -make | --make | -m | --m)          -make | --make | -m | --m)
1426              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1427          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1428              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1429            
1430          -makefile | --makefile | -ma | --ma)          -bash | --bash)
1431                ac_prev=BASH ;;
1432            -bash=* | --bash=*)
1433                BASH=$ac_optarg ;;
1434    
1435            -makedepend | --makedepend | -md | --md)
1436                ac_prev=MAKEDEPEND ;;
1437            -makedepend=* | --makedepend=* | -md=* | --md=*)
1438                MAKEDEPEND=$ac_optarg ;;
1439    
1440            -makefile | --makefile | -mf | --mf)
1441              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1442          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1443              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1444            
1445          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1446              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
1447          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
1448              PLATFORM=$ac_optarg ;;              echo
1449                        usage
1450                ;;
1451    
1452          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1453              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1454          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1455              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1456            
1457          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1458              ac_prev=MODS ;;              ac_prev=MODS ;;
1459          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1460              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1461            
1462          -disable | --disable)          -disable | --disable)
1463              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1464          -disable=* | --disable=*)          -disable=* | --disable=*)
1465              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1466            
1467          -enable | --enable)          -enable | --enable)
1468              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1469          -enable=* | --enable=*)          -enable=* | --enable=*)
1470              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1471            
1472          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1473              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1474          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
1475              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
1476    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
1477  #           -cpp | --cpp)  #           -cpp | --cpp)
1478  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1479  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1480  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1481                
1482            -cc | --cc)
1483                ac_prev=CC ;;
1484            -cc=* | --cc=*)
1485                CC=$ac_optarg ;;
1486    
1487          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1488              ac_prev=FC ;;              ac_prev=FC ;;
1489          -fc=* | --fc=*)          -fc=* | --fc=*)
1490              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1491            
1492            -fs | --fs)
1493                ac_prev=FS ;;
1494            -fs=* | --fs=*)
1495                FS=$ac_optarg ;;
1496    
1497            -fs90 | --fs90)
1498                ac_prev=FS90 ;;
1499            -fs90=* | --fs90=*)
1500                FS90=$ac_optarg ;;
1501    
1502            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1503                USE_R4=true ;;
1504    
1505          -ieee | --ieee)          -ieee | --ieee)
1506              IEEE=true ;;              IEEE=true ;;
1507          -noieee | --noieee)          -noieee | --noieee)
1508              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1509                    -devel | --devel)
1510                IEEE=true ; DEVEL=true ;;
1511            -gsl | --gsl)
1512                GSL=true ;;
1513    
1514            -ts | --ts)
1515                TS=true ;;
1516            -papis | --papis)
1517                PAPIS=true ;;
1518            -pcls | --pcls)
1519                PCLS=true ;;
1520            -foolad | --foolad)
1521                FOOLAD=true ;;
1522            -papi | --papi)
1523                PAPI=true ;;
1524            -pcl | --pcl)
1525                PCL=true ;;
1526            -hpmt | --hpmt)
1527                HPMT=true ;;
1528    
1529          -mpi | --mpi)          -mpi | --mpi)
1530              MPI=true ;;              MPI=true ;;
1531          -nompi | --nompi)          -mpi=* | --mpi=*)
1532              MPI= ;;              MPIPATH=$ac_optarg
1533                        MPI=true ;;
1534          -jam | --jam)  
1535              JAM=1 ;;          -omp | --omp)
1536          -nojam | --nojam)              OMP=true ;;
1537              JAM=0 ;;          -omp=* | --omp=*)
1538                        OMPFLAG=$ac_optarg
1539                OMP=true ;;
1540    
1541          -ds | --ds)          -ds | --ds)
1542              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1543            
1544            -extra_flag | --extra_flag)
1545                ac_prev=FEXTRAFLAGS ;;
1546            -extra_flag=* | --extra_flag=*)
1547                FEXTRAFLAGS=$ac_optarg ;;
1548    
1549          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1550              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1551          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 518  for ac_option ; do Line 1556  for ac_option ; do
1556          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1557              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1558    
1559            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1560                IGNORE_TIME="-DIGNORE_TIME" ;;
1561    
1562            -es | --es | -embed-source | --embed-source)
1563                EMBED_SRC=t ;;
1564    
1565          -*)          -*)
1566              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1567              usage              usage
1568              ;;              ;;
1569            
1570          *)          *)
1571              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1572              usage              usage
1573              ;;              ;;
1574            
1575      esac      esac
1576        
1577  done  done
1578    
1579    printf "  getting local config information:  "
1580    if test -f $gm_local ; then
1581        echo "using $gm_local"
1582        . $gm_local
1583    else
1584        echo "none found"
1585    fi
1586    
1587  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1588      echo      echo
1589      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1590      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1591      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1592      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1593        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1594        echo "WARNING: ignore \"./.genmakerc\" and continue."
1595      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1596  fi  fi
1597    
1598    #  Find the MITgcm ${ROOTDIR}
1599  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1600      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1601        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1602          ROOTDIR=".."          ROOTDIR=".."
1603      else      else
1604          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1605              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1606                  ROOTDIR=$d                  ROOTDIR=$d
1607                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1608                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1609                  break                  break
1610              fi              fi
1611          done          done
# Line 569  if test ! -d ${ROOTDIR} ; then Line 1622  if test ! -d ${ROOTDIR} ; then
1622      exit 1      exit 1
1623  fi  fi
1624    
1625  echo "  getting OPTFILE information:  "  #  Find the MITgcm ${THISVER}
1626    version_file="${ROOTDIR}/doc/tag-index"
1627    if test -f $version_file ; then
1628        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1629    #-  remove ./BUILD_INFO.h file if older than version_file
1630        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1631            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1632            rm -f ./BUILD_INFO.h
1633        fi
1634    fi
1635    
1636    if test "x$MAKEFILE" = x ; then
1637        MAKEFILE="Makefile"
1638    fi
1639    
1640    echo "  getting OPTFILE information:"
1641  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1642      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1643          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1644          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1645          find_possible_configs          find_possible_optfile
1646      else      else
1647          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1648      fi      fi
# Line 582  fi Line 1650  fi
1650  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
1651      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1652          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
1653          source "$OPTFILE"          . "$OPTFILE"
1654          RETVAL=$?          RETVAL=$?
1655          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1656              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1657              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1658              exit 1              exit 1
1659          fi          fi
1660          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1661              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1662          fi          fi
1663      else      else
# Line 598  if test "x$OPTFILE" != xNONE ; then Line 1666  if test "x$OPTFILE" != xNONE ; then
1666      fi      fi
1667  fi  fi
1668    
1669  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1670  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1671      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
1672          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
# Line 609  fi Line 1677  fi
1677  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
1678      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1679          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1680          source "$AD_OPTFILE"          . "$AD_OPTFILE"
1681          RETVAL=$?          RETVAL=$?
1682          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1683              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1684              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1685              exit 1              exit 1
1686          fi          fi
1687          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1688              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1689          fi          fi
1690      else      else
# Line 625  if test "x${AD_OPTFILE}" != xNONE ; then Line 1693  if test "x${AD_OPTFILE}" != xNONE ; then
1693      fi      fi
1694  fi  fi
1695    
1696  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  #====================================================================
1697  #  and abort!  #  Set default values if not set by the optfile
1698    #
1699    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1700    #  either set defaults or complain and abort!
1701    if test ! "x$BASH" = x ; then
1702        # add a trailing space so that it works within the Makefile syntax (see below)
1703        BASH="$BASH "
1704    fi
1705  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1706      cat <<EOF 1>&2      cat <<EOF 1>&2
1707    
# Line 637  Error: no Fortran compiler: please speci Line 1712  Error: no Fortran compiler: please speci
1712  EOF  EOF
1713      exit 1      exit 1
1714  fi  fi
1715    if test "x$GET_FC_VERSION" != x ; then
1716      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1717      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1718      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1719      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1720      if test -s genmake_fc_vers1 ; then
1721        cat genmake_fc_vers1 >> $LOGFILE
1722      else
1723        cat genmake_fc_vers2 >> $LOGFILE
1724      fi
1725      echo "<-- compiler version ----" >> $LOGFILE
1726      rm -f genmake_fc_vers1 genmake_fc_vers2
1727    fi
1728    
1729    if test "x$CC" = x ; then
1730        look_for_C_compilers
1731    fi
1732    
1733  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1734      LINK=$FC      LINK=$FC
1735  fi  fi
1736    if test "x$MAKE" = x ; then
1737        MAKE="make"
1738    fi
1739  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1740      CPP="cpp"      CPP="cpp -traditional -P"
1741  fi  fi
1742    #EH3 === UGLY ===
1743    #  The following is an ugly little hack to check for $CPP in /lib/ and
1744    #  it should eventually be replaced with a more general function that
1745    #  searches a combo of the user's path and a list of "usual suspects"
1746    #  to find the correct location for binaries such as $CPP.
1747    for i in " " "/lib/" ; do
1748        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1749    done
1750    #EH3 === UGLY ===
1751  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1752  RETVAL=$?  RETVAL=$?
1753  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 652  Error: C pre-processor "$CPP" failed the Line 1757  Error: C pre-processor "$CPP" failed the
1757    
1758    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1759    2) the "./genmake_local" file    2) the "./genmake_local" file
1760      3) with the CPP environment variable
1761    
1762  EOF  EOF
1763      exit 1      exit 1
1764  else  else
1765      rm -f test_cpp      rm -f test_cpp
1766  fi  fi
1767  if test "x$MAKEDEPEND" = x ; then  
1768      MAKEDEPEND=makedepend  look_for_makedepend
1769    
1770    #  Check that soft-link command is set and usable
1771    if test "x$LN" = x ; then
1772        LN="ln -s"
1773    fi
1774    echo "test" > genmake_test_ln
1775    $LN genmake_test_ln genmake_tlink
1776    RETVAL=$?
1777    if test "x$RETVAL" != x0 ; then
1778        cat <<EOF 1>&2
1779    
1780    Error: The command "$LN" failed -- please specify a working soft-link
1781      command in the optfile.
1782    
1783    EOF
1784        exit 1
1785    fi
1786    test -L genmake_tlink > /dev/null 2>&1
1787    RETVAL=$?
1788    if test "x$RETVAL" = x0 ; then
1789        HAVE_TEST_L=t
1790    fi
1791    rm -f genmake_test_ln genmake_tlink
1792    
1793    #  Check for broken *.F/*.f handling and fix if possible
1794    check_for_broken_Ff
1795    
1796    if test ! "x$MPI" = x ; then
1797          echo "  Turning on MPI cpp macros"
1798          DEFINES="$DEFINES -DALLOW_USE_MPI"
1799    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1800    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1801    fi
1802    if test ! "x$OMP" = x ; then
1803          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1804          FFLAGS="$FFLAGS $OMPFLAG"
1805          F90FLAGS="$F90FLAGS $OMPFLAG"
1806          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1807    fi
1808    
1809    if test ! "x$USE_R4" = x ; then
1810          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1811          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1812    fi
1813    
1814    if test ! "x$TS" = x ; then
1815          echo "  Turning on timing per timestep"
1816          if test ! "x$FOOLAD" = x ; then
1817                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1818          else
1819                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1820          fi
1821          PACKAGES="$PACKAGES showflops"
1822    fi
1823    if test ! "x$PAPIS" = x ; then
1824          echo "  Turning on PAPI flop summary per timestep"
1825          echo "  Please make sure PAPIINC, PAPILIB are defined"
1826          if test ! "x$FOOLAD" = x ; then
1827                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1828          else
1829                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1830          fi
1831          INCLUDES="$INCLUDES $PAPIINC"
1832          LIBS="$LIBS $PAPILIB"
1833          PACKAGES="$PACKAGES showflops"
1834    fi
1835    if test ! "x$PCLS" = x ; then
1836          echo "  Turning on PCL counter summary per timestep"
1837          echo "  Please make sure PCLINC, PCLLIB are defined"
1838          if test ! "x$FOOLAD" = x ; then
1839                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1840          else
1841                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1842          fi
1843          INCLUDES="$INCLUDES $PCLINC"
1844          LIBS="$LIBS $PCLLIB"
1845          PACKAGES="$PACKAGES showflops"
1846    fi
1847    if test ! "x$PAPI" = x ; then
1848          if test ! "x$PAPIS" = x ; then
1849              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1850              echo "  Sticking with PAPI flop summary per timestep!"
1851          else
1852              echo "  Turning on performance analysis with PAPI"
1853              echo "  Please make sure PAPIINC, PAPILIB are defined"
1854              DEFINES="$DEFINES -DUSE_PAPI"
1855              INCLUDES="$INCLUDES $PAPIINC"
1856              LIBS="$LIBS $PAPILIB"
1857          fi
1858    fi
1859    if test ! "x$PCL" = x ; then
1860          if test ! "x$PCLS" = x ; then
1861              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1862              echo "  Sticking with PCL flop summary per timestep!"
1863          else
1864              echo "  Turning on performance analysis with PCL"
1865              echo "  Please make sure PCLINC, PCLLIB are defined"
1866              DEFINES="$DEFINES -DUSE_PCL"
1867              INCLUDES="$INCLUDES $PCLINC"
1868              LIBS="$LIBS $PCLLIB"
1869          fi
1870    fi
1871    if test ! "x$HPMT" = x ; then
1872          if test ! "x$PAPI" = x ; then
1873              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1874              echo "  Sticking with PAPI!"
1875          else
1876            if test ! "x$PCL" = x ; then
1877              echo "  PCL and the HPM Toolkit cannot co-exist!"
1878              echo "  Sticking with PCL!"
1879            else
1880              echo "  Turning on performance analysis with the HPM Toolkit"
1881              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1882              DEFINES="$DEFINES -DUSE_LIBHPM"
1883              INCLUDES="$INCLUDES $HPMTINC"
1884              LIBS="$LIBS $HPMTLIB"
1885            fi
1886          fi
1887    fi
1888    if test ! "x$GSL" = x ; then
1889          echo "  Turning on use of GSL to control floating point calculations"
1890          echo "  Please make sure GSLINC, GSLLIB are defined"
1891          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1892          INCLUDES="$INCLUDES $GSLINC"
1893          LIBS="$LIBS $GSLLIB"
1894    fi
1895    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1896    if test ! "x$USE_EXTENDED_SRC" = x ; then
1897          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1898          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1899    fi
1900    
1901    printf "\n===  Checking system libraries  ===\n"
1902    printf "  Do we have the system() command using $FC...  "
1903    cat > genmake_tcomp.$FS <<EOF
1904          program hello
1905          call system('echo hi')
1906          end
1907    EOF
1908    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1909    RETVAL=$?
1910    if test "x$RETVAL" = x0 ; then
1911        HAVE_SYSTEM=t
1912        DEFINES="$DEFINES -DHAVE_SYSTEM"
1913        echo "yes"
1914    else
1915        HAVE_SYSTEM=
1916        echo "no"
1917    fi
1918    rm -f genmake_tcomp*
1919    
1920    printf "  Do we have the fdate() command using $FC...  "
1921    cat > genmake_tcomp.$FS <<EOF
1922          program hello
1923          CHARACTER*(128) string
1924          string = ' '
1925          call fdate( string )
1926          print *, string
1927          end
1928    EOF
1929    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1930    RETVAL=$?
1931    if test "x$RETVAL" = x0 ; then
1932        HAVE_FDATE=t
1933        DEFINES="$DEFINES -DHAVE_FDATE"
1934        echo "yes"
1935    else
1936        HAVE_FDATE=
1937        echo "no"
1938    fi
1939    rm -f genmake_tcomp*
1940    
1941    printf "  Do we have the etime() command using $FC...  "
1942    cat > genmake_tcomp.$FS <<EOF
1943          program hello
1944          REAL*4 ACTUAL, TARRAY(2)
1945          EXTERNAL ETIME
1946          REAL*4 ETIME
1947          actual = etime( tarray )
1948          print *, tarray
1949          end
1950    EOF
1951    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1952    RETVAL=$?
1953    if test "x$RETVAL" = x0 ; then
1954        HAVE_ETIME=t
1955        DEFINES="$DEFINES -DHAVE_ETIME"
1956        echo "yes"
1957    else
1958        HAVE_ETIME=
1959        echo "no"
1960    fi
1961    rm -f genmake_tcomp*
1962    
1963    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1964    check_HAVE_CLOC
1965    if test "x$HAVE_CLOC" != x ; then
1966        DEFINES="$DEFINES -DHAVE_CLOC"
1967        echo "yes"
1968    else
1969        echo "no"
1970        if test "x$EMBED_SRC" = xt ; then
1971            echo "    WARNING: you requested file embedding but it has"
1972            echo "      been disabled since C code cannot be called"
1973            EMBED_SRC=
1974        fi
1975    fi
1976    rm -f genmake_t*
1977    
1978    printf "  Can we unlimit the stack size using $FC...  "
1979    check_HAVE_SETRLSTK
1980    if test "x$HAVE_SETRLSTK" = xt ; then
1981        DEFINES="$DEFINES -DHAVE_SETRLSTK"
1982        echo "yes"
1983    else
1984        echo "no"
1985    fi
1986    rm -f genmake_t*
1987    
1988    printf "  Can we register a signal handler using $FC...  "
1989    check_HAVE_SIGREG
1990    if test "x$HAVE_SIGREG" = xt ; then
1991        DEFINES="$DEFINES -DHAVE_SIGREG"
1992        echo "yes"
1993    else
1994        echo "no"
1995    fi
1996    rm -f genmake_t*
1997    
1998    printf "  Can we use stat() through C calls...  "
1999    check_HAVE_STAT
2000    if test "x$HAVE_STAT" != x ; then
2001        DEFINES="$DEFINES -DHAVE_STAT"
2002        echo "yes"
2003    else
2004        echo "no"
2005    fi
2006    rm -f genmake_t*
2007    
2008    printf "  Can we create NetCDF-enabled binaries...  "
2009    check_netcdf_libs
2010    if test "x$HAVE_NETCDF" != x ; then
2011        DEFINES="$DEFINES -DHAVE_NETCDF"
2012        echo "yes"
2013    else
2014        echo "no"
2015    fi
2016    
2017    printf "  Can we create LAPACK-enabled binaries...  "
2018    check_lapack_libs
2019    if test "x$HAVE_LAPACK" != x ; then
2020        DEFINES="$DEFINES -DHAVE_LAPACK"
2021        echo "yes"
2022    else
2023        echo "no"
2024    fi
2025    
2026    printf "  Can we call FLUSH intrinsic subroutine...  "
2027    check_HAVE_FLUSH
2028    if test "x$HAVE_FLUSH" = xt ; then
2029        DEFINES="$DEFINES -DHAVE_FLUSH"
2030        echo "yes"
2031    else
2032        echo "no"
2033    fi
2034    
2035    DEFINES="$DEFINES $IGNORE_TIME"
2036    if test "x$EMBED_SRC" = xt ; then
2037        build_embed_encode
2038    fi
2039    if test "x$EMBED_SRC" = xt ; then
2040        ENABLE="$ENABLE embed_files"
2041    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
2042  fi  fi
2043    
2044  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
2045  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories: "
2046  for d in $MODS ; do  for d in $MODS ; do
2047      if test ! -d $d ; then      if test ! -d $d ; then
2048          echo          echo
2049          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
2050          exit 1          exit 1
2051      else      else
2052          echo -n " $d"          printf "$d "
2053          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
2054          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
2055      fi      fi
2056  done  done
2057  echo  echo
2058    
2059  if test "x$MAKEFILE" = x ; then  #if test "x${PLATFORM}" = x ; then
2060      MAKEFILE="Makefile"  #    PLATFORM=$p_PLATFORM
2061  fi  #fi
 if test "x${PLATFORM}" = x ; then  
     PLATFORM=$p_PLATFORM  
 fi  
2062    
2063  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
2064      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
2065        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
2066          EXEDIR=../exe          EXEDIR=../exe
2067      else      else
2068          EXEDIR=.          EXEDIR=.
# Line 700  if test "x${TOOLSDIR}" = x ; then Line 2077  if test "x${TOOLSDIR}" = x ; then
2077      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
2078  fi  fi
2079  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
2080      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
2081      exit 1      exit 1
2082  fi  fi
2083  if test "x$S64" = x ; then  if test "x$S64" = x ; then
2084      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
2085        RETVAL=$?
2086        if test "x${RETVAL}" = x0 ; then
2087            S64='$(TOOLSDIR)/set64bitConst.sh'
2088        else
2089            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
2090            RETVAL=$?
2091            if test "x${RETVAL}" = x0 ; then
2092                S64='$(TOOLSDIR)/set64bitConst.csh'
2093            else
2094                cat <<EOF
2095    
2096    ERROR: neither of the two default scripts:
2097    
2098        ${TOOLSDIR}/set64bitConst.sh
2099        ${TOOLSDIR}/set64bitConst.csh
2100    
2101      are working so please check paths or specify (with \$S64) a
2102      working version of this script.
2103    
2104    EOF
2105                exit 1
2106            fi
2107        fi
2108  fi  fi
2109    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
2110    
2111  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2112    
2113    #  Set Standard Code Directories:
2114    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2115        STANDARDDIRS="eesupp model"
2116    fi
2117    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2118    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2119    ckM=$?
2120    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2121    ckE=$?
2122    if test $ckM = 0 -a $ckE = 1 ; then
2123        STANDARDDIRS="$STANDARDDIRS eesupp"
2124    fi
2125    
2126  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2127  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2128  #  they appear as regular source code  #  they appear as regular source code
2129  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2130      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2131      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2132        ) > make_eesupp.errors 2>&1
2133      RETVAL=$?      RETVAL=$?
2134      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2135          rm -f make_eesupp.errors          rm -f make_eesupp.errors
2136      else      else
2137          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
2138          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
2139          exit 1          exit 1
2140      fi      fi
2141  fi  fi
2142    
2143    #same for pkg/exch2 and pkg/regrid
2144    for pdir in exch2 regrid ; do
2145        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2146            echo "  Making source files in pkg/${pdir} from templates"
2147            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2148            ) > make_${pdir}.errors 2>&1
2149            RETVAL=$?
2150            if test "x${RETVAL}" = x0 ; then
2151                rm -f make_${pdir}.errors
2152            else
2153                echo "Error: problem encountered while building source files in pkg/${pdir}:"
2154                cat make_${pdir}.errors 1>&2
2155                exit 1
2156            fi
2157        fi
2158    done
2159    
2160  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2161  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2162      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2163      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2164          PDEPEND=$tmp  fi
2165      else  if  test "x${PKG_DEPEND}" = x ; then
2166          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2167          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2168  else  else
2169      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2170          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2171          exit 1          exit 1
2172      fi      fi
2173        echo "  getting package dependency info from  $PKG_DEPEND"
2174    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2175        get_pdepend_list $PKG_DEPEND
2176  fi  fi
2177  echo "  getting package dependency info from  $PDEPEND"  
2178  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2179  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2180  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2181      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2182      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2183  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2184  if test ! "x${RETVAL}" = x0 ; then  fi
2185      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2186      exit 1          echo "Warning:  No package groups information was specified."
2187            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2188    else
2189        if test ! -r ${PKG_GROUPS} ; then
2190            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2191            exit 1
2192        fi
2193        echo "  getting package groups info from      $PKG_GROUPS"
2194  fi  fi
 source ./.pd_tmp  
 rm -f ./.pd_tmp  
2195    
2196  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2197  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2198  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2199  echo  -n "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2200      for i in "." $MODS ; do      for i in "." $MODS ; do
2201          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2202                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2203                  break                  break
2204          fi          fi
2205      done      done
2206  fi  fi
2207  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2208      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2209  fi      if test "x${PKG_GROUPS}" = x ; then
2210  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2211      echo "default packages file disabled"          exit 1
2212        fi
2213  else  else
2214      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2215          echo ""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2216          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          exit 1
2217      else      else
2218          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2219          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2220          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2221          RETVAL=$?          RETVAL=$?
2222          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2223              echo -n "Error: can't parse default package list "              printf "Error: can't parse package list "
2224              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2225              exit 1              exit 1
2226          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         expand_pkg_groups  
         echo "    after group expansion packages are:  $PACKAGES"  
2227      fi      fi
2228  fi  fi
2229    for i in $pkg_list ; do
2230        PACKAGES="$PACKAGES $i"
2231    done
2232    echo     "    before group expansion packages are:$PACKAGES"
2233    if test "x${PKG_GROUPS}" != x ; then
2234        RET=1
2235        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2236        echo "    after group expansion packages are: $PACKAGES"
2237    fi
2238    
2239  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2240    echo "" > ./.tmp_pack
2241    for i in $PACKAGES ; do
2242        echo $i >> ./.tmp_pack
2243    done
2244    for i in `grep  "-" ./.tmp_pack` ; do
2245        j=`echo $i | sed 's/[-]//'`
2246        DISABLE="$DISABLE $j"
2247    done
2248  pack=  pack=
2249  for p in $PACKAGES ; do  for p in $PACKAGES ; do
2250      addit="t"      addit="t"
# Line 811  PACKAGES="$pack" Line 2261  PACKAGES="$pack"
2261  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2262  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
2263  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2264    # Test if each explicitly referenced package exists
2265  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2266      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
2267          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""      if test ! -d "$ROOTDIR/pkg/$j" ; then
2268            echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2269          exit 1          exit 1
2270      fi      fi
2271      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2272  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
2273  PACKAGES=  PACKAGES=
2274  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
2275      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2276  done  done
2277  echo "    packages are:  $PACKAGES"  rm -f ./.tmp_pack
2278    echo "    packages are: $PACKAGES"
2279    
2280    #  Check for package MNC: if NetCDF is available, then build the MNC
2281    #  template files ; otherwise, delete mnc from the list of packages.
2282    echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2283    mnc_in=$?
2284    if test "x$HAVE_NETCDF" != xt ; then
2285        if test "x$mnc_in" = x0 ; then
2286            cat <<EOF
2287    *********************************************************************
2288    WARNING: the "mnc" package was enabled but tests failed to compile
2289      NetCDF applications.  Please check that:
2290    
2291      1) NetCDF is correctly installed for this compiler and
2292      2) the LIBS variable (within the "optfile") specifies the correct
2293           NetCDF library to link against.
2294    
2295  echo "  applying package dependency rules"    Due to this failure, the "mnc" package is now DISABLED.
2296  ck=  *********************************************************************
2297  while test "x$ck" != xtt ; do  EOF
2298            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2299            DISABLE="$DISABLE mnc"
2300        else
2301        #  this prevent to add mnc (due to pdepend rules) if not available
2302            DISABLE="$DISABLE mnc"
2303        fi
2304    else
2305        # we have NetCDF, we try to build MNC template files
2306        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2307        RETVAL=$?
2308        if test "x${RETVAL}" = x0 ; then
2309            rm -f make_mnc.errors
2310        else
2311            echo "Error: problem encountered while building source files in pkg/mnc:"
2312            cat make_mnc.errors 1>&2
2313            if test "x$mnc_in" = x0 ; then
2314                exit 1
2315            else
2316                DISABLE="$DISABLE mnc"
2317            fi
2318        fi
2319    fi
2320    
2321    #  Check for package PROFILES: if NetCDF is not available,
2322    #  then delete profiles from the list of available packages.
2323    if test "x$HAVE_NETCDF" != xt ; then
2324        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2325        RETVAL=$?
2326        if test "x$RETVAL" = x0 ; then
2327            cat <<EOF
2328    *********************************************************************
2329    WARNING: the "profiles" package was enabled but tests failed to
2330      compile NetCDF applications.  Please check that:
2331    
2332      1) NetCDF is correctly installed for this compiler and
2333      2) the LIBS variable (within the "optfile") specifies the correct
2334           NetCDF library to link against.
2335    
2336      Due to this failure, the "profiles" package is now DISABLED.
2337    *********************************************************************
2338    EOF
2339            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2340            DISABLE="$DISABLE profiles"
2341        else
2342        #  this prevent to add profiles (due to pdepend rules) if not available
2343            DISABLE="$DISABLE profiles"
2344        fi
2345    fi
2346    
2347    #  Check for package RADTRANS: if LAPACK is not available,
2348    #  then issue a warning that the direct radtrans solver is not available.
2349    if test "x$HAVE_LAPACK" != xt ; then
2350        echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1
2351        RETVAL=$?
2352        if test "x$RETVAL" = x0 ; then
2353            cat <<EOF
2354    *********************************************************************
2355    WARNING: the "radtrans" package was enabled but tests failed to
2356      compile LAPACK applications.  This means that the direct radtrans
2357      solver is not available and compilation will fail if it is enabled.
2358      If you want to use the direct solver, please check that:
2359    
2360      1) LAPACK is correctly installed for this compiler and
2361      2) the LIBS variable (within the "optfile") specifies the correct
2362         LAPACK library to link against.
2363    *********************************************************************
2364    EOF
2365        fi
2366    fi
2367    
2368    if  test "x${PKG_DEPEND}" != x ; then
2369      echo "  applying package dependency rules"
2370      ck=
2371      while test "x$ck" != xtt ; do
2372      i=0      i=0
2373      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2374      rtot=$nname      rtot=$nname
2375      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2376    
2377          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2378          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 844  while test "x$ck" != xtt ; do Line 2384  while test "x$ck" != xtt ; do
2384                  pin="t"                  pin="t"
2385              fi              fi
2386          done          done
2387            #  or in the current $STANDARDDIRS list?
2388            for p in $STANDARDDIRS ; do
2389                if test "x$p" = "x$pname" ; then pin="t" ; fi
2390            done
2391    
2392          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2393          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 866  while test "x$ck" != xtt ; do Line 2410  while test "x$ck" != xtt ; do
2410    
2411          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2412          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2413                #echo "   " $pname ": need to add :" $dname
2414              in_dis="f"              in_dis="f"
2415              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2416                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 886  while test "x$ck" != xtt ; do Line 2431  while test "x$ck" != xtt ; do
2431          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2432          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2433              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2434              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2435              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2436              exit 1              exit 1
2437          fi          fi
2438          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2439            #i=$(( $i + 1 ))
2440      done      done
2441      ck=$ck"t"      ck=$ck"t"
2442  done    done
2443  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2444    fi
2445  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2446      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2447      if test -d $adr ; then      if test -d $adr ; then
# Line 909  for i in $PACKAGES ; do Line 2456  for i in $PACKAGES ; do
2456      fi      fi
2457  done  done
2458    
 #  This is compatible with the old genmake.  The "DISABLE_*" flags  
 #  need to be replaced by the "ALLOW_*" flags set below.  
 #  
 # echo -n "  Setting package-specific CPP flags:  "  
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
2459  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2460  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2461  cat <<EOF >$PACKAGES_DOT_H".tmp"  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2462  C=== GENMAKE v2 ===  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
   
 C  Packages disabled by genmake:  
 EOF  
 #  The following UGLY HACK sets multiple "#undef"s and it needs to go  
 #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  
2463  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2464  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2465  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2466  all_pack=  all_pack=
2467    DISABLED_PACKAGES=
2468  for n in $names ; do  for n in $names ; do
2469      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2470          has_pack="f"          has_pack="f"
# Line 958  for n in $names ; do Line 2475  for n in $names ; do
2475              fi              fi
2476          done          done
2477          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2478              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2479              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
 #           DEFINES="$DEFINES -U$undef"  
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
2480          fi          fi
2481      fi      fi
2482  done  done
2483  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2484  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2485      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2486      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2487  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2488    
2489  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2490      case $i in      case $i in
2491          aim_v23)          aim_v23)
2492              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2493              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
2494              ;;              ;;
2495      esac      esac
2496  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2497    
2498  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
2499    
2500  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2501  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2502  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" != x ; then
2503      STANDARDDIRS="eesupp model"      for d in $STANDARDDIRS ; do
2504            adr="$ROOTDIR/$d/src"
2505            if test ! -d $adr ; then
2506                echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2507                echo "  is correct and that you correctly specified the STANDARDDIRS option"
2508                exit 1
2509            else
2510                SOURCEDIRS="$SOURCEDIRS $adr"
2511            fi
2512            adr="$ROOTDIR/$d/inc"
2513            if test ! -d $adr ; then
2514                echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2515                echo "  is correct and that you correctly specified the STANDARDDIRS option"
2516                exit 1
2517            else
2518                INCLUDEDIRS="$INCLUDEDIRS $adr"
2519            fi
2520        done
2521  fi  fi
 for d in $STANDARDDIRS ; do  
     adr="$ROOTDIR/$d/src"  
     if test ! -d $adr ; then  
         echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""  
         echo "  is correct and that you correctly specified the STANDARDDIRS option"  
         exit 1  
     else  
         SOURCEDIRS="$SOURCEDIRS $adr"  
     fi  
     adr="$ROOTDIR/$d/inc"  
     if test ! -d $adr ; then  
         echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""  
         echo "  is correct and that you correctly specified the STANDARDDIRS option"  
         exit 1  
     else  
         INCLUDEDIRS="$INCLUDEDIRS $adr"  
     fi  
 done  
2522    
2523  echo "  Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2524  echo "    of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
2525  CPP_OPTIONS=  CPP_OPTIONS=
2526    CPP_EEOPTIONS=
2527  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
2528    names=`ls -1 "$ROOTDIR/pkg"`
2529  for i in $spaths ; do  for i in $spaths ; do
2530      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
2531      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
2532          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2533          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2534          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2535            for n in $names ; do
2536                test_for_package_in_cpp_options $CPP_OPTIONS $n
2537            done
2538        fi
2539        try="$i/CPP_EEOPTIONS.h"
2540        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2541            echo "    found CPP_EEOPTIONS=\"$try\""
2542            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2543    #**** not yet enabled ****
2544    #        test_for_mpi_in_cpp_eeoptions $try
2545    #**** not yet enabled ****
2546            CPP_EEOPTIONS="$try"
2547      fi      fi
2548  done  done
2549  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
2550      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2551      exit 1      exit 1
2552  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
2553    
2554  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2555  #  compiler.  #  compiler.
2556  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2557      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2558  fi  fi
2559  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2560    touch adSrcFiles.tmp
2561  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2562      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2563      for j in $list_files ; do      for j in $list_files ; do
2564          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2565      done      done
2566  done  done
2567    if test ! "x"$FS = "x.f" ; then
2568  cat <<EOF > adjoint_sed      cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2569  s/call adopen(/call adopen ( mythid,\\      mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2570       \&           /g  fi
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
2571    
2572  echo  echo
2573  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2574  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2575  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2576      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2577          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2578      fi      fi
2579  done  done
2580    
2581    if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2582        if test ! "x$MPIINCLUDEDIR" = x ; then
2583            #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2584            #   checking for additional included headers (in case of chain of included
2585            #   header); also set LOCAL_MPI_HEADERS (if not already set)
2586            mpi_headers_do_local_copy
2587        fi
2588    fi
2589    
2590  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2591  rm -rf .links.tmp  rm -rf .links.tmp
2592  mkdir .links.tmp  mkdir .links.tmp
2593    touch .links.tmp/foo
2594    if test ! -r ".links.tmp/foo" ; then
2595        echo
2596        echo "ERROR : something is wrong with your directory permissions or"
2597        echo "   your user file-creation mask (\"umask\") since creating a"
2598        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2599        echo "   not working.  Please try setting your umask to something"
2600        echo "   sane such as:"
2601        echo
2602        echo "      umask 0002"
2603        echo
2604        echo "   and please verify that you have the proper permissions for"
2605        echo "   creating sub-directories and then reading files created"
2606        echo "   within them."
2607        echo
2608        exit 1
2609    fi
2610    rm -f .links.tmp/foo
2611    
2612    if test "x$OPENAD" != x ; then
2613        OAD_DONT_COMPILE="/dev/null"
2614        OAD_DONT_TRANSFORM="/dev/null"
2615        OAD_KEEP_ORIGINAL="/dev/null"
2616        OAD_CB2M_FILES="/dev/null"
2617        OADTOOLS="$TOOLSDIR/OAD_support"
2618        echo "  looking for dontCompile file:  "
2619        for i in "." $MODS ; do
2620            if test -r $i"/dontCompile" ; then
2621                OAD_DONT_COMPILE=$i"/dontCompile"
2622                echo "     found $OAD_DONT_COMPILE"
2623                break
2624            fi
2625        done
2626        echo "  looking for dontTransform file:  "
2627        for i in "." $MODS ; do
2628            if test -r $i"/dontTransform" ; then
2629                OAD_DONT_TRANSFORM=$i"/dontTransform"
2630                echo "     found $OAD_DONT_TRANSFORM"
2631                break
2632            fi
2633        done
2634        echo "  looking for keepOriginal file:  "
2635        for i in "." $MODS ; do
2636            if test -r $i"/keepOriginal" ; then
2637                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2638                echo "     found $OAD_KEEP_ORIGINAL"
2639                break
2640            fi
2641        done
2642        echo "  looking for cb2mFiles:  "
2643        for i in "." $MODS ; do
2644            if test -r $i"/cb2mFiles" ; then
2645                OAD_CB2M_FILES=$i"/cb2mFiles"
2646                echo "     found $OAD_CB2M_FILES"
2647                break
2648            fi
2649        done
2650        echo "   OpenAD exceptions:  "
2651    fi
2652    
2653  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2654  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2655  echo -n 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2656  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2657  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2658  echo -n 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2659  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2660    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2661  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2662  for d in $alldirs ; do  for d in $alldirs ; do
2663      deplist=      deplist=
2664      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2665      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2666        if test "x$OPENAD" != x ; then
2667            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2668        fi
2669      for sf in $sfiles ; do      for sf in $sfiles ; do
2670          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2671              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2672                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  ignore_f=f
2673                  touch .links.tmp/$sf                  case $d/$sf in
2674                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2675                  case $extn in                          ignore_f=t
2676                      F)                          ;;
2677                          echo    " \\"  >> srclist.inc                    ./AD_CONFIG.h)
2678                          echo -n " $sf" >> srclist.inc                          ignore_f=t
2679                            ;;
2680                      ./FC_NAMEMANGLE.h)
2681                            ignore_f=t
2682                            ;;
2683                      ./BUILD_INFO.h)
2684                            ignore_f=t
2685                            ;;
2686                      ./EMBEDDED_FILES.h)
2687                            ignore_f=t
2688                            ;;
2689                      *)
2690                            #  For the local directory *ONLY*,
2691                            #  ignore all soft-links
2692                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2693                                ignore_f=t
2694                            else
2695                                touch .links.tmp/$sf
2696                                deplist="$deplist $sf"
2697                            fi
2698                            ;;
2699                    esac
2700                    if test "x$ignore_f" = xf ; then
2701                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2702                        case $extn in
2703                          F)
2704                            echo    " \\"  >> F77srclist.tmp
2705                            printf " $sf" >> F77srclist.tmp
2706                            if test "x$OPENAD" = x ; then
2707                                basename=${sf%%.F}
2708                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2709                                if test -z "$isAD" ; then
2710                                    echo    " \\"  >> nonADF77srclist.tmp
2711                                    printf " $sf" >> nonADF77srclist.tmp
2712                                fi
2713                            else #- OpenAD case:
2714                                basename=${sf%%.F}
2715                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2716                                if test -z "$isAD" ; then
2717                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2718                                    if test -z "$toBeIgnored" ; then
2719                                        echo    " \\"  >> nonADF77srclist.tmp
2720                                        printf " $sf" >> nonADF77srclist.tmp
2721                                    else
2722                                        echo "    not to be compiled   :  $sf"
2723                                    fi
2724                                else # file is initially listed as an AD file we want to exclude it
2725                                     # or we want to retain the untransformed version
2726                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2727                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2728                                    if test -n "$notToBeTransformed"; then
2729                                        echo "    not to be transformed:  $sf"
2730                                    fi
2731                                    if test -n "$untransformedVersionToBeKept" ; then
2732                                        echo "    original to be kept  :  $sf"
2733                                    fi
2734                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2735                                        echo    " \\"  >> nonADF77srclist.tmp
2736                                        printf " $sf" >> nonADF77srclist.tmp
2737                                    fi
2738                                fi
2739                            fi
2740                          ;;                          ;;
2741                      F90)                      F90)
2742                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2743                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2744                          ;;                          ;;
2745                      c)                      c)
2746                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2747                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2748                          ;;                          ;;
2749                      h)                      h)
2750                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2751                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2752                          ;;                          ;;
2753                      flow)                      flow)
2754                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.tmp
2755                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.tmp
2756                          ;;                          ;;
2757                  esac                     esac
2758                    fi
2759              fi              fi
2760          fi          fi
2761      done      done
2762      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2763          if test "$d" != "." ; then
2764          echo "" >> srclinks.tmp          echo "" >> srclinks.tmp
2765          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2766          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2767          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2768    # This may happen when make thinks that a header file has to be "remade"
2769    # because a module it depends on has changed.  In this case we do nothing.
2770            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2771          fi
2772      fi      fi
2773  done  done
2774  rm -rf .links.tmp  rm -rf .links.tmp
2775  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2776  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2777  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2778  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2779  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2780    echo "" >> ad_flow_files.tmp
2781    
2782    CMDLINE=$0
2783    for xx in "$@" ; do nw=`echo $xx | wc -w`
2784        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2785                            else CMDLINE="$CMDLINE '$xx'" ; fi
2786    done
2787    
2788  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2789      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2790  fi  fi
2791  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2792  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 1170  echo "#    $MACHINE" >> $MAKEFILE Line 2794  echo "#    $MACHINE" >> $MAKEFILE
2794  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2795  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2796  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2797  echo "#    $0 $@" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2798  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2799  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2800    
2801  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2802  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
2803  EXE_SVD=$EXECUTABLE"_svd"  EXE_SVD=$EXECUTABLE"_svd"
2804    
2805  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2806  #  #
2807    # OPTFILE="$OPTFILE"
2808    #
2809  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2810  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2811  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 1190  cat >>$MAKEFILE <<EOF Line 2816  cat >>$MAKEFILE <<EOF
2816  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2817  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2818  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2819  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2820  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2821  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 1199  cat >>$MAKEFILE <<EOF Line 2823  cat >>$MAKEFILE <<EOF
2823  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2824    
2825  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2826  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2827  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2828  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2829  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2830  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2831  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2832    OADTOOLS    = ${OADTOOLS}
2833    
2834  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2835  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 1212  EXE_AD      = ${EXE_AD} Line 2837  EXE_AD      = ${EXE_AD}
2837  EXE_FTL     = ${EXE_FTL}  EXE_FTL     = ${EXE_FTL}
2838  EXE_SVD     = ${EXE_SVD}  EXE_SVD     = ${EXE_SVD}
2839    
2840    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2841    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2842    
2843    # These files are created by Makefile
2844    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2845  EOF  EOF
2846    
2847  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2848        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2849    else
2850        echo "EMBEDDED_FILES = " >>$MAKEFILE
2851    fi
2852    
2853    # extract default cpp search path so we can pass it to makedepend
2854    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2855    
2856  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2857  # Unix ln (link)  # Unix ln (link)
2858  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2859  # Dependency generator  # Dependency generator
2860  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2861  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 1229  KPP = ${KPP} Line 2864  KPP = ${KPP}
2864  FC = ${FC}  FC = ${FC}
2865  # Fortran compiler  # Fortran compiler
2866  F90C = ${F90C}  F90C = ${F90C}
2867    # C compiler
2868    CC = ${CC}
2869  # Link editor  # Link editor
2870  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2871    
2872  # Defines for CPP  # Defines for CPP
2873  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2874  # Includes for CPP  # Includes for CPP
2875  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2876    # default CPP includes for makedepend
2877    CPPINCLUDES = ${CPPINCLUDES}
2878  # Flags for KPP  # Flags for KPP
2879  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2880  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2881  # Optim./debug for FC  # Optim./debug for FC
2882  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2883  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2884  # Optim./debug for FC  # Optim./debug for FC
2885  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2886  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2887    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2888  # Flags for CC  # Flags for CC
2889  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2890  # Files that should not be optimized  # Files that should not be optimized
2891  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2892  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2893  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2894  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2895  # Name of the Mekfile  # Name of the makefile
2896  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2897    # Name of the make program
2898    MAKE = ${MAKE}
2899    
2900  EOF  EOF
2901    
2902  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2903  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2904  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2905  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2906  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2907  echo               >> $MAKEFILE  cat ad_flow_files.tmp   >> $MAKEFILE
2908  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  
2909  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2910  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2911    echo >> $MAKEFILE
2912    
2913  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  # add definitions for preprocessed sources
2914  rm -f ad_flow_files.inc  # and note that not all systems allow case sensitive extensions
2915    # hence the $FS and $FS90 here.
2916    # for fixed format f90 files we use ff90 or FF90 resp
2917    # but these are not expected to be the original source files
2918    
2919    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2920    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2921    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2922    echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2923    echo >> $MAKEFILE
2924    echo '.SUFFIXES:' >> $MAKEFILE
2925    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2926    
2927  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2928    
2929  .SUFFIXES:  all: fwd_exe_target
2930  .SUFFIXES: .o .f .p .F .c .F90 .f90  fwd_exe_target:
2931            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2932            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2933            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2934            @-rm -f ad_config.template
2935            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2936    
2937  all: \$(EXECUTABLE)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2938  \$(EXECUTABLE): \$(OBJFILES)          @echo Creating \$@ ...
2939          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2940    
2941  depend:  depend:
2942          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2943          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2944          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2945            -rm -f makedepend.out
2946    
2947    lib: libmitgcmuv.a
2948    
2949  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  libmitgcmuv.a: \$(OBJFILES)
2950            ar rcv libmitgcmuv.a \$(OBJFILES)
2951            ar d   libmitgcmuv.a main.o
2952    
2953  small_f: \$(F77FILES) \$(F90FILES)  obj: \$(OBJFILES)
2954    
2955    links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2956    
2957    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2958    
2959  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2960          @printf 'running ... '          @printf 'running ... '
2961          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2962    
2963    # remove most of the files that "make" generates
2964  clean:  clean:
2965          -cat AD_CONFIG.template > AD_CONFIG.h          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2966          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.o
2967            -rm -rf *.$FS *.flowdir
2968            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2969    
2970    # remove most of the files that "make" and "make depend" generate
2971  Clean:  Clean:
2972          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2973          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2974          -rm -f Makefile.bak genmake_state genmake_*optfile make.log          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2975            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2976    
2977    # remove also the executable, files that "genmake2" generates (except Makefile)
2978    #         and output from a run (plus log files from testreport)
2979  CLEAN:  CLEAN:
2980          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2981            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2982            -rm -f $LOGFILE genmake_state genmake_*optfile
2983            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2984            -rm -rf mpi_headers mnc_test_*
2985          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2986          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2987          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2988          -rm -f \$(EXECUTABLE) output.txt          -rm -f *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
2989            -rm -f datetime costfinal divided.ctrl snapshot* output_adm.txt.diva_*
2990            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2991            -rm -f oad_cp.[0-9][0-9][0-9].?????
2992    
 #eh3 Makefile: makefile  
2993  makefile:  makefile:
2994          ${0} $@          $THIS_SCRIPT $G2ARGS
2995  cleanlinks:  cleanlinks:
2996          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2997    
2998  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are created by make
2999  .F.f:  ${PACKAGES_DOT_H}:
3000          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          @echo Creating \$@ ...
3001  .f.o:          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
3002    AD_CONFIG.h:
3003            @echo Creating \$@ ...
3004            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
3005    FC_NAMEMANGLE.h:
3006            @echo Creating \$@ ...
3007            echo "$FC_NAMEMANGLE" > \$@
3008    
3009    BUILD_INFO.h:
3010            @echo Creating \$@ ...
3011    EOF
3012    
3013    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
3014    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
3015    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
3016    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
3017    
3018    if test "x$EMBED_SRC" = xt ; then
3019        cat >>$MAKEFILE <<EOF
3020    
3021    decode_files.o : EMBEDDED_FILES.h
3022    
3023    ##  \$(F77_PP_SRC_FILES)
3024    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3025            @echo Creating \$@ ...
3026            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3027            -rm -f all_fF.tar.gz
3028            -gzip all_fF.tar
3029    
3030    EMBEDDED_FILES.h : all_fF.tar.gz
3031            @echo Creating \$@ ...
3032            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
3033    
3034    EOF
3035    fi
3036    
3037    cat >>$MAKEFILE <<EOF
3038    
3039    # The normal chain of rules is (  .F - .$FS - .o  )
3040    
3041    ## This nullifies any default implicit rules concerning these two file types:
3042    ## %.o : %.F
3043    
3044    # C preprocessing and replacing the _d in constants:
3045    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3046    
3047    .F.$FS:
3048            \$(CPPCMD)  > \$@
3049    .$FS.o:
3050          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3051  .F90.f90:  .F.o:
3052          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3053  .f90.o:  .F90.$FS90:
3054            \$(CPPCMD)  > \$@
3055    .FF90.f$FS90:
3056            \$(CPPCMD)  > \$@
3057    .$FS90.o:
3058          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3059    .f$FS90.o:
3060            cp \$< \$(basename  \$<).f90
3061            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
3062  .c.o:  .c.o:
3063          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3064    .flow.flowdir:
3065            \$(CPPCMD) > \$@
3066    
3067  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3068  .F.p:  .F.p:
3069          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3070  .p.f:  .p.$FS:
3071          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3072    
3073    EOF
3074    
3075  #=========================================  #=========================================
3076  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
3077    #===  for TAMC/TAF  ======================
3078    
3079    if test "x$OPENAD" = x ; then
3080    
3081    cat >>$MAKEFILE <<EOF
3082    
3083  TAMC           = ${TAMC}  TAMC           = ${TAMC}
3084  TAF            = ${TAF}  TAF            = ${TAF}
3085    
3086  TAF_EXTRA      = ${TAF_EXTRA}  TAF_EXTRA      = ${TAF_EXTRA}
3087  TAMC_EXTRA     = ${TAMC_EXTRA}  TAMC_EXTRA     = ${TAMC_EXTRA}
3088    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3089    
3090  EOF  EOF
3091    
# Line 1345  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 3094  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
3094  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
3095  for i in $ad_vars ; do  for i in $ad_vars ; do
3096      name=$i      name=$i
3097      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
3098      eval $t1      eval $t1
3099      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
3100      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
3101  done  done
3102    
3103  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
3104  echo >> $MAKEFILE  echo >> $MAKEFILE
3105  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
3106  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
3107  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3108      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
3109      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
3110  done  done
3111  echo >> $MAKEFILE  echo >> $MAKEFILE
3112  rm -f ad_files  rm -f adSrcFiles.tmp
3113    
3114  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3115    
3116  # ... AD ...  # ... AD ...
3117  adall: ad_taf  adall: ad_exe_target
3118  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
3119  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
3120    
3121    ad_exe_target:
3122            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3123            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3124            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3125            @-rm -f ad_config.template
3126            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3127    
3128  ad_input_code.f: \$(SRCFILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3129            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3130          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3131          @make \$(F77FILES)          @-rm -f ad_config.template
3132          @make \$(AD_FLOW_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3133          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3134            cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3135  ad_taf_output.f: ad_input_code.f  
3136          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
3137          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3138            ls -l ad_input_code_ad.$FS
3139  ad_taf: ad_taf_output.o \$(OBJFILES)          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3140          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)  
3141    adtafonly:
3142  ad_tamc_output.f: ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3143          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          ls -l ad_input_code_ad.$FS
3144          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3145    
3146    \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3147            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3148    
3149    ad_tamc_output.$FS: ad_input_code.$FS
3150            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3151            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3152    
3153  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
3154          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3155    
3156    adonlyfwd:
3157            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3158    
3159    adtrick:
3160            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3161    
3162    adobj: ad_taf_output.o \$(OBJFILES)
3163    
3164  # ... FTL ...  # ... FTL ...
3165  ftlall: ftl_taf  ftlall: ftl_exe_target
3166  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
3167  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
3168    
3169  ftl_input_code.f: \$(SRCFILES)  ftl_exe_target:
3170          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3171          @make \$(F77FILES)          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3172          @make \$(AD_FLOW_FILES)          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3173          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          @-rm -f ad_config.template
3174            \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
 ftl_taf_output.f: ftl_input_code.f  
         \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f  
         cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_taf_output.f  
   
 ftl_taf: ftl_taf_output.o \$(OBJFILES)  
         \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)  
   
 ftl_tamc_output.f: ftl_input_code.f  
         \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f  
         cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_tamc_output.f  
3175    
3176  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_input_code.$FS: \$(AD_FILES)
3177          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3178            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3179            @-rm -f ad_config.template
3180            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3181            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3182            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3183    
3184    ftl_taf_output.$FS: ftl_input_code.$FS
3185            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3186            ls -l ftl_input_code_tl.$FS
3187            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3188    
3189    ftltafonly:
3190            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3191            ls -l ftl_input_code_tl.$FS
3192            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3193    
3194    \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3195            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3196    
3197    ftl_tamc_output.$FS: ftl_input_code.$FS
3198            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3199            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3200    
3201    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3202            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
3203    
3204  # ... SVD ...  # ... SVD ...
3205  svd: svd_taf  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
3206  svd_taf_f: svd_taf_output.f          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
3207            @echo "--->>> Do make svdall afterwards to compile. <<<---"
3208    svdall: svd_touch svd_taf
3209    
3210    svd_taf: \$(OBJFILES)
3211            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
3212    
3213            @echo "--->>> Only COMPILE svd code! <<<---"
3214            @echo "--->>> Assumes you previously <<<---"
3215            @echo "--->>> did make svdtaf        <<<---"
3216    
3217    svd_touch:
3218            @echo "--->>> Only COMPILE svd code! <<<---"
3219            @echo "--->>> Assumes you previously <<<---"
3220            @echo "--->>> did make svdtaf        <<<---"
3221            touch ad_taf_output.$FS ftl_taf_output.$FS
3222            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3223            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3224            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3225            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3226            @-rm -f ad_config.template
3227    
3228  svd_input_code.f: \$(SRCFILES)  EOF
3229          cmp svd_config.template AD_CONFIG.h || cat svd_config.template > AD_CONFIG.h  
3230          @make \$(F77FILES)  fi
         @make \$(AD_FLOW_FILES)  
         cat \$(AD_FLOW_FILES) \$(AD_FILES) > svd_input_code.f  
   
 svd_taf_output.f: svd_input_code.f  
         \$(TAF) \$(SVD_TAF_FLAGS) \$(TAF_EXTRA) svd_input_code.f  
         cat svd_input_code_ad.f | sed -f adjoint_sed > svd_taf_output.f  
3231    
3232  svd_taf: svd_taf_output.o \$(OBJFILES)  #===  for OpenAD  ========================
         \$(LINK) -o ${EXE_SVD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) svd_taf_output.o \$(LIBS)  
3233    
3234    if test "x$OPENAD" != x ; then
3235    
3236  #=========================================  # ============ begin OpenAD specific section ==============
3237    
3238    cat >>$MAKEFILE <<EOF
3239    
3240    # all the source files linked from the various locations:
3241    ALL_LINKED_FILES= \
3242    \$(F77_SRC_FILES) \
3243    \$(C_SRC_FILES) \
3244    \$(H_SRC_FILES) \
3245    \$(F90_SRC_FILES) \
3246    \$(SPECIAL_FILES)
3247    
3248    ifndef OPENADROOT
3249      \$(error "Error:  environment variable OPENADROOT not defined!")
3250    endif
3251    
3252    ifndef XAIFSCHEMAROOT
3253      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
3254    endif
3255    
3256    ifndef XAIFBOOSTERROOT
3257      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
3258    endif
3259    
3260    EOF
3261    
3262    echo "  Add the source list for common block to module conversion "
3263    echo >> $MAKEFILE