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revision 1.223 by jmc, Wed Aug 10 19:39:35 2011 UTC revision 1.240 by jmc, Sat Sep 8 20:16:23 2012 UTC
# Line 17  Usage: "$0" [OPTIONS] Line 17  Usage: "$0" [OPTIONS]
17    where [OPTIONS] can be:    where [OPTIONS] can be:
18    
19      -help | --help | -h | --h      -help | --help | -h | --h
20            Print this help message and exit.            Print this help message and exit.
21    
22      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24            Use "NAME" as the adoptfile.  By default, the file at            Use "NAME" as the adoptfile.  By default, the file at
25            "tools/adjoint_options/adjoint_default" will be used.            "tools/adjoint_options/adjoint_default" will be used.
26    
27      -nooptfile | --nooptfile      -nooptfile | --nooptfile
28        -optfile NAME | --optfile NAME | -of NAME | --of NAME        -optfile NAME | --optfile NAME | -of NAME | --of NAME
29        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30            Use "NAME" as the optfile.  By default, an attempt will be            Use "NAME" as the optfile.  By default, an attempt will be
31            made to find an appropriate "standard" optfile in the            made to find an appropriate "standard" optfile in the
32            tools/build_options/ directory.            tools/build_options/ directory.
33    
34      -pdepend NAME | --pdepend NAME      -pdepend NAME | --pdepend NAME
35        -pdepend=NAME | --pdepend=NAME        -pdepend=NAME | --pdepend=NAME
36            Get package dependency information from "NAME".            Get package dependency information from "NAME".
37    
38      -pgroups NAME | --pgroups NAME      -pgroups NAME | --pgroups NAME
39        -pgroups=NAME | --pgroups=NAME        -pgroups=NAME | --pgroups=NAME
40            Get the package groups information from "NAME".            Get the package groups information from "NAME".
41    
42      -bash NAME      -bash NAME
43            Explicitly specify the Bourne or BASH shell to use            Explicitly specify the Bourne or BASH shell to use
44    
45      -make NAME | -m NAME      -make NAME | -m NAME
46        --make=NAME | -m=NAME        --make=NAME | -m=NAME
47            Use "NAME" for the MAKE program. The default is "make" but            Use "NAME" for the MAKE program. The default is "make" but
48            many platforms, "gmake" is the preferred choice.            many platforms, "gmake" is the preferred choice.
49    
50      -makefile NAME | -mf NAME      -makefile NAME | -mf NAME
51        --makefile=NAME | -mf=NAME        --makefile=NAME | -mf=NAME
52            Call the makefile "NAME".  The default is "Makefile".            Call the makefile "NAME".  The default is "Makefile".
53    
54      -makedepend NAME | -md NAME      -makedepend NAME | -md NAME
55        --makedepend=NAME | -md=NAME        --makedepend=NAME | -md=NAME
56            Use "NAME" for the MAKEDEPEND program.            Use "NAME" for the MAKEDEPEND program.
57    
58      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60            Specify the location of the MITgcm ROOTDIR as "NAME".            Specify the location of the MITgcm ROOTDIR as "NAME".
61            By default, genamke will try to find the location by            By default, genamke will try to find the location by
62            looking in parent directories (up to the 5th parent).            looking in parent directories (up to the 5th parent).
63    
64      -mods NAME | --mods NAME | -mo NAME | --mo NAME      -mods NAME | --mods NAME | -mo NAME | --mo NAME
65        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66            Here, "NAME" specifies a list of directories that are            Here, "NAME" specifies a list of directories that are
67            used for additional source code.  Files found in the            used for additional source code.  Files found in the
68            "mods list" are given preference over files of the same            "mods list" are given preference over files of the same
69            name found elsewhere.            name found elsewhere.
70    
71      -disable NAME | --disable NAME      -disable NAME | --disable NAME
72        -disable=NAME | --disable=NAME        -disable=NAME | --disable=NAME
73            Here "NAME" specifies a list of packages that we don't            Here "NAME" specifies a list of packages that we don't
74            want to use.  If this violates package dependencies,            want to use.  If this violates package dependencies,
75            genamke will exit with an error message.            genamke will exit with an error message.
76    
77      -enable NAME | --enable NAME      -enable NAME | --enable NAME
78        -enable=NAME | --enable=NAME        -enable=NAME | --enable=NAME
79            Here "NAME" specifies a list of packages that we wish            Here "NAME" specifies a list of packages that we wish
80            to specifically enable.  If this violates package            to specifically enable.  If this violates package
81            dependencies, genamke will exit with an error message.            dependencies, genamke will exit with an error message.
82    
83      -standarddirs NAME | --standarddirs NAME      -standarddirs NAME | --standarddirs NAME
84        -standarddirs=NAME | --standarddirs=NAME        -standarddirs=NAME | --standarddirs=NAME
85            Here, "NAME" specifies a list of directories to be            Here, "NAME" specifies a list of directories to be
86            used as the "standard" code.            used as the "standard" code.
87    
88      -fortran NAME | --fortran NAME | -fc NAME | --fc NAME      -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89        -fc=NAME | --fc=NAME        -fc=NAME | --fc=NAME
90            Use "NAME" as the fortran compiler.  By default, genmake            Use "NAME" as the fortran compiler.  By default, genmake
91            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
92            "usual suspects" such as g77, f77, etc.            "usual suspects" such as g77, f77, etc.
93    
94      -cc NAME | --cc NAME | -cc=NAME | --cc=NAME      -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95            Use "NAME" as the C compiler.  By default, genmake            Use "NAME" as the C compiler.  By default, genmake
96            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
97            "usual suspects" such as gcc, c89, cc, etc.            "usual suspects" such as gcc, c89, cc, etc.
98    
99      -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4      -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100            Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)            Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101            *only* works if CPP_EEOPTIONS.h allows this.            *only* works if CPP_EEOPTIONS.h allows this.
102    
103      -ignoretime | -ignore_time | --ignoretime | --ignore_time      -ignoretime | -ignore_time | --ignoretime | --ignore_time
104            Ignore all the "wall clock" routines entirely.  This will            Ignore all the "wall clock" routines entirely.  This will
105            not in any way hurt the model results -- it simply means            not in any way hurt the model results -- it simply means
106            that the code that checks how long the model spends in            that the code that checks how long the model spends in
107            various routines will give junk values.            various routines will give junk values.
108    
109      -ts | --ts      -ts | --ts
110            Produce timing information per timestep            Produce timing information per timestep
111      -papis | --papis      -papis | --papis
112            Produce summary MFlop/s (and IPC) with PAPI per timestep            Produce summary MFlop/s (and IPC) with PAPI per timestep
113      -pcls | --pcls      -pcls | --pcls
114            Produce summary MFlop/s etc. with PCL per timestep            Produce summary MFlop/s etc. with PCL per timestep
115      -foolad | --foolad      -foolad | --foolad
116            Fool the AD code generator            Fool the AD code generator
117      -papi | --papi      -papi | --papi
118            Performance analysis with PAPI            Performance analysis with PAPI
119      -pcl | --pcl      -pcl | --pcl
120            Performance analysis with PCL            Performance analysis with PCL
121      -hpmt | --hpmt      -hpmt | --hpmt
122            Performance analysis with the HPM Toolkit            Performance analysis with the HPM Toolkit
123    
124      -ieee | --ieee      -ieee | --ieee
125            use IEEE numerics.  Note that this option *only* works            use IEEE numerics.  Note that this option *only* works
126            if it is supported by the OPTFILE that is being used.            if it is supported by the OPTFILE that is being used.
127      -devel | --devel      -devel | --devel
128            Add additional warning and debugging flags for development            Add additional warning and debugging flags for development
129            (if supported by the OPTFILE); also switch to IEEE numerics.            (if supported by the OPTFILE); also switch to IEEE numerics.
130      -gsl | --gsl      -gsl | --gsl
131            Use GSL to control floating point rounding and precision            Use GSL to control floating point rounding and precision
132    
133      -mpi | --mpi      -mpi | --mpi
134            Include MPI header files and link to MPI libraries            Include MPI header files and link to MPI libraries
135      -mpi=PATH | --mpi=PATH      -mpi=PATH | --mpi=PATH
136            Include MPI header files and link to MPI libraries using MPI_ROOT            Include MPI header files and link to MPI libraries using MPI_ROOT
137            set to PATH. i.e. Include files from \$PATH/include, link to libraries            set to PATH. i.e. Include files from \$PATH/include, link to libraries
138            from \$PATH/lib and use binaries from \$PATH/bin.            from \$PATH/lib and use binaries from \$PATH/bin.
139    
140      -omp | --omp      -omp | --omp
141            Activate OpenMP code + use Compiler option OMPFLAG            Activate OpenMP code + use Compiler option OMPFLAG
142      -omp=OMPFLAG | --omp=OMPFLAG      -omp=OMPFLAG | --omp=OMPFLAG
143            Activate OpenMP code + use Compiler option OMPFLAG            Activate OpenMP code + use Compiler option OMPFLAG
144    
145      -es | --es | -embed-source | --embed-source      -es | --es | -embed-source | --embed-source
146            Embed a tarball containing the full source code            Embed a tarball containing the full source code
147            (including the Makefile, etc.) used to build the            (including the Makefile, etc.) used to build the
148            executable [off by default]            executable [off by default]
149    
150      -ds | --ds      -ds | --ds
151            Report genmake internal variables status (DUMPSTATE)            Report genmake internal variables status (DUMPSTATE)
152            to file "genmake_state" (for debug purpose)            to file "genmake_state" (for debug purpose)
153    
154    While it is most often a single word, the "NAME" variables specified    While it is most often a single word, the "NAME" variables specified
155    above can in many cases be a space-delimited string such as:    above can in many cases be a space-delimited string such as:
# Line 174  EOF Line 174  EOF
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
175      cpp_options=$1      cpp_options=$1
176      pkg=$2      pkg=$2
177      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
178      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
179      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
180      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"  
181  }  }
182    
183  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
184  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
185  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
186      cpp_options=$1      cpp_options=$1
187      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
188      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"  
189  }  }
190    
191  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 203  test_for_mpi_in_cpp_eeoptions() { Line 193  test_for_mpi_in_cpp_eeoptions() {
193  test_for_string_in_file() {  test_for_string_in_file() {
194      file=$1      file=$1
195      strng=$2      strng=$2
196      grep -i "$strng" $file > /dev/null 2>&1      grep "$strng" $file > /dev/null 2>&1
197      RETVAL=$?      RETVAL=$?
198      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
199          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
200          grep -i "$strng" $file          grep -i "$strng" $file
201          exit 99          exit 99
202      fi      fi
203      return 0      return 0
# Line 297  EOF Line 287  EOF
287  .F.$tfs:  .F.$tfs:
288          $LN \$< \$@          $LN \$< \$@
289  EOF  EOF
290      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
291      RETVAL=$?      RETVAL=$?
292      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
293          if test "x$FS" = x ; then          if test "x$FS" = x ; then
# Line 305  EOF Line 295  EOF
295              FS90='fr9'              FS90='fr9'
296              check_for_broken_Ff              check_for_broken_Ff
297          else          else
298              cat <<EOF 2>&1              echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
299  ERROR: Your file system cannot distinguish between *.F and *.f files              echo "       see simple makefile: '$MAKEFILE' (left here)"
300    (fails the "make/ln" test) and this program cannot find a suitable              echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
301    replacement extension.  Please try a different build environment or              echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
302    contact the <MITgcm-support@mitgcm.org> list for help.              echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
303                echo ""
 EOF  
304              exit -1              exit -1
305              return              return
306          fi          fi
# Line 384  EOF Line 373  EOF
373        stop        stop
374        end        end
375  EOF  EOF
376          makedepend genmake_tc.f > /dev/null 2>&1          makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
377          RV1=$?          RV1=$?
378          test -f $MAKEFILE  &&  rm -f $MAKEFILE          test -f $MAKEFILE  &&  rm -f $MAKEFILE
379          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
# Line 412  build_cyrus_makedepend()  { Line 401  build_cyrus_makedepend()  {
401      (      (
402          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
403              &&  ./configure > /dev/null 2>&1  \              &&  ./configure > /dev/null 2>&1  \
404              &&  make > /dev/null 2>&1              &&  $MAKE > /dev/null 2>&1
405          if test -x ./makedepend.exe ; then          if test -x ./makedepend.exe ; then
406              $LN ./makedepend.exe ./makedepend              $LN ./makedepend.exe ./makedepend
407          fi          fi
# Line 436  build_embed_encode() Line 425  build_embed_encode()
425  {  {
426      printf "  building the embed-encode utility...  "      printf "  building the embed-encode utility...  "
427      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
428          if test ! -d "$ROOTDIR/tools/embed_encode" ; then          if test ! -d "$ROOTDIR/tools/embed_encode" ; then
429              echo              echo
430              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
431              echo              echo
432              EMBED_SRC=f              EMBED_SRC=f
433              return 1              return 1
434          fi          fi
435          clist="cc gcc c89 $CC"          clist="cc gcc c89 $CC"
436          for ic in $clist ; do          for ic in $clist ; do
437              comm="$ic -o encode_files encode_files.c"              comm="$ic -o encode_files encode_files.c"
# Line 450  build_embed_encode() Line 439  build_embed_encode()
439              RETVAL=$?              RETVAL=$?
440              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
441                  echo "OK"                  echo "OK"
                 DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
442                  return 0                  return 0
443              fi              fi
444          done          done
# Line 462  build_embed_encode() Line 450  build_embed_encode()
450          return 1          return 1
451      fi      fi
452      echo "OK"      echo "OK"
     DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
453  }  }
454    
455  #  look for possible C compilers  #  look for possible C compilers
# Line 580  EOF Line 567  EOF
567      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
568          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
569          if test ! -r $OPTFILE ; then          if test ! -r $OPTFILE ; then
570               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
571          fi          fi
572      fi      fi
573    
574      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
# Line 599  Error: No options file was found in:  $R Line 586  Error: No options file was found in:  $R
586  EOF  EOF
587          exit 1          exit 1
588      fi      fi
   
 #     # look for possible MPI libraries  
 #     mpi_libs=  
 #     mpi_fort=`which mpif77 2>/dev/null`  
 #     RETVAL=$?  
 #     if test "x${RETVAL}" = x0 ; then  
 #       cat >>test.f <<EOF  
 #       PROGRAM HELLO  
 #       DO 10, I=1,10  
 #       PRINT *,'Hello World'  
 #    10 CONTINUE  
 #       STOP  
 #       END  
 # EOF  
 #       eval "$mpi_fort -showme test.f > out"  
 #       RETVAL=$?  
 #       if test "x${RETVAL}" = x0 ; then  
 #           a=`cat out`  
 #           for i in $a ; do  
 #               case $i in  
 #                   -*)  
 #                       mpi_libs="$mpi_libs $i" ;;  
 #               esac  
 #           done  
 #           echo "The MPI libs appear to be:"  
 #           echo "  "$mpi_libs  
 #       fi  
 #       rm -f test.f out  
 #     fi  
589  }  }
590    
591  #  Parse the package dependency information  #  Parse the package dependency information
# Line 652  get_fortran_c_namemangling()  { Line 610  get_fortran_c_namemangling()  {
610    
611      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
612      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
613          return 0          return 0
614      fi      fi
615      echo " running: get_fortran_c_namemangling()" >> $LOGFILE      echo " running: get_fortran_c_namemangling()" >> $LOGFILE
616    
# Line 784  EOF Line 742  EOF
742      RETVAL=$?      RETVAL=$?
743      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
744          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
745      fi      fi
746      rm -f genmake_tc*      rm -f genmake_tc*
747      echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE      echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
# Line 846  EOF Line 803  EOF
803      RETVAL=$?      RETVAL=$?
804      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
805          HAVE_SIGREG=t          HAVE_SIGREG=t
         DEFINES="$DEFINES -DHAVE_SIGREG"  
806      fi      fi
807      rm -f genmake_tc*      rm -f genmake_tc*
808      echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE      echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
809  }  }
810    
811  check_HAVE_SETRLSTK()  {  check_HAVE_SETRLSTK()  {
     if test "x$HAVE_SETRLSTK" = xt ; then  
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
         return  
     fi    
812      if test ! "x$HAVE_SETRLSTK" = x ; then      if test ! "x$HAVE_SETRLSTK" = x ; then
813          return          return
814      fi      fi
# Line 894  EOF Line 846  EOF
846      RETVAL=$?      RETVAL=$?
847      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
848          HAVE_SETRLSTK=t          HAVE_SETRLSTK=t
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
849      fi      fi
850      rm -f genmake_tc*      rm -f genmake_tc*
851      echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE      echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
# Line 941  EOF Line 892  EOF
892      RETVAL=$?      RETVAL=$?
893      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
894          HAVE_STAT=t          HAVE_STAT=t
         DEFINES="$DEFINES -DHAVE_STAT"  
895      fi      fi
896      rm -f genmake_tc*      rm -f genmake_tc*
897      echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE      echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
# Line 1039  EOF Line 989  EOF
989      echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE      echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
990  }  }
991    
992    check_lapack_libs()  {
993        if test ! "x$SKIP_LAPACK_CHECK" = x ; then
994            return
995        fi
996        echo >> $LOGFILE
997        echo "running: check_lapack_libs()" >> $LOGFILE
998        cat <<EOF > genmake_tla.F
999          program fgenla
1000          integer info
1001          integer ipiv( 2 )
1002          double precision ab( 4, 2 ), b( 2 )
1003          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1004          data b / 1., 1. /
1005          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1006          IF (info .NE. 0) write(*,*) 'Error:', info
1007          write(*,*) b
1008          end
1009    EOF
1010        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1011        cat genmake_tla.F >> genmake_tla.log
1012        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1013        RET_CPP=f
1014        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1015        echo "$COMM" >> genmake_tla.log
1016        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1017        if test "x$RET_CPP" = xf ; then
1018            echo "  WARNING: CPP failed to pre-process the lapack test." \
1019                >> genmake_tla.log
1020            echo "    Please check that \$INCLUDES is properly set." \
1021                >> genmake_tla.log
1022        fi
1023        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1024        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1025        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1026            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1027        RET_COMPILE=$?
1028        cat genmake_tla.log >> $LOGFILE
1029    
1030        # test program execution not always possible (see check_netcdf_libs)
1031        #
1032        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1033        #RETVAL=$?
1034        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1035    
1036        if test "x$RET_COMPILE" = x0 ; then
1037            HAVE_LAPACK=t
1038            echo "check_lapack: successful" >> $LOGFILE
1039        else
1040            # try again with "-llapack" added to the libs
1041            echo "==> try again with added '-llapack'" > genmake_tla.log
1042            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1043            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1044            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1045            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1046                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1047                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1048            RET_COMPILE=$?
1049            echo >> $LOGFILE
1050            cat genmake_tla.log >> $LOGFILE
1051            if test "x$RET_COMPILE" = x0 ; then
1052                LIBS="$LIBS -llapack"
1053                HAVE_LAPACK=t
1054                echo "check_lapack: successful" >> $LOGFILE
1055            else
1056            # try again with "-lf77blas -lcblas" added to the libs
1057                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1058                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1059                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1060                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1061                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1062                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1063                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1064                RET_COMPILE=$?
1065                echo >> $LOGFILE
1066                cat genmake_tla.log >> $LOGFILE
1067                if test "x$RET_COMPILE" = x0 ; then
1068                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1069                    HAVE_LAPACK=t
1070                    echo "check_lapack: successful" >> $LOGFILE
1071                else
1072                # try again with "-latlas" added to the libs
1073                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1074                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1075                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1076                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1077                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1078                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1079                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1080                    RET_COMPILE=$?
1081                    echo >> $LOGFILE
1082                    cat genmake_tla.log >> $LOGFILE
1083                    if test "x$RET_COMPILE" = x0 ; then
1084                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1085                        HAVE_LAPACK=t
1086                        echo "check_lapack: successful" >> $LOGFILE
1087                    fi
1088                fi
1089            fi
1090        fi
1091        rm -f genmake_tla*
1092        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1093    }
1094    
1095    
1096  ###############################################################################  ###############################################################################
1097  #   Sequential part of script starts here  #   Sequential part of script starts here
# Line 1106  HAVE_STAT= Line 1159  HAVE_STAT=
1159  HAVE_NETCDF=  HAVE_NETCDF=
1160  HAVE_ETIME=  HAVE_ETIME=
1161  IGNORE_TIME=  IGNORE_TIME=
1162    HAVE_LAPACK=
1163    
1164  MODS=  MODS=
1165  TOOLSDIR=  TOOLSDIR=
# Line 1113  SOURCEDIRS= Line 1167  SOURCEDIRS=
1167  INCLUDEDIRS=  INCLUDEDIRS=
1168  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1169    
1170    #- local config file
1171    gm_local="genmake_local"
1172    
1173  G2ARGS=  G2ARGS=
1174  BASH=  BASH=
1175  PWD=`pwd`  PWD=`pwd`
# Line 1149  SVD_TAMC_FLAGS= Line 1206  SVD_TAMC_FLAGS=
1206  TAMC_EXTRA=  TAMC_EXTRA=
1207    
1208  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1209  gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS DISABLE ENABLE MAKEFILE MAKEDEPEND PLATFORM"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1210  gm_s2="FC CC MPI OMP USE_R4 TS PAPIS PCLS PAPI PCL HPMT IEEE DEVEL GSL FEXTRAFLAGS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1211  gm_s3="ROOTDIR STANDARDDIRS MODS DUMPSTATE"  gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1212    
1213  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1214  gm_s4="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM"  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1215  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1216  gm_s6="TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"  gm_s6="TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1217  gm_s7="PWD THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s7="PWD THISHOST THISUSER THISDATE THISVER MACHINE"
1218  gm_s8="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME"  gm_s8="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK"
1219    
1220  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1221  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 1184  LOGFILE="genmake.log" Line 1241  LOGFILE="genmake.log"
1241  rm -f genmake_state genmake_*optfile $LOGFILE  rm -f genmake_state genmake_*optfile $LOGFILE
1242    
1243  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 printf "  getting local config information:  "  
 if test -f $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1244    
1245  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1246  #parse_options  #parse_options
# Line 1212  for ac_option in "$@" ; do Line 1259  for ac_option in "$@" ; do
1259      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1260    
1261      case $ac_option in      case $ac_option in
1262            
1263          -help | --help | -h | --h)          -help | --help | -h | --h)
1264              usage ;;              usage ;;
1265            
1266          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1267              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1268          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1269              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1270          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1271              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1272            
1273          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1274              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1275          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1276              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1277            
1278          -pdepend | --pdepend)          -pdepend | --pdepend)
1279              ac_prev=PKG_DEPEND ;;              ac_prev=PKG_DEPEND ;;
1280          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1281              PKG_DEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1282            
1283          -pgroups | --pgroups)          -pgroups | --pgroups)
1284              ac_prev=PKG_GROUPS ;;              ac_prev=PKG_GROUPS ;;
1285          -pgroups=* | --pgroups=*)          -pgroups=* | --pgroups=*)
1286              PKG_GROUPS=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1287            
1288          -make | --make | -m | --m)          -make | --make | -m | --m)
1289              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1290          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1291              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1292            
1293          -bash | --bash)          -bash | --bash)
1294              ac_prev=BASH ;;              ac_prev=BASH ;;
1295          -bash=* | --bash=*)          -bash=* | --bash=*)
1296              BASH=$ac_optarg ;;              BASH=$ac_optarg ;;
1297            
1298          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1299              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1300          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
1301              MAKEDEPEND=$ac_optarg ;;              MAKEDEPEND=$ac_optarg ;;
1302            
1303          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -mf | --mf)
1304              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1305          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1306              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1307            
1308          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1309              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1310              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1311              echo              echo
1312              usage              usage
1313              ;;              ;;
1314            
1315          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1316              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1317          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1318              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1319            
1320          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1321              ac_prev=MODS ;;              ac_prev=MODS ;;
1322          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1323              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1324            
1325          -disable | --disable)          -disable | --disable)
1326              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1327          -disable=* | --disable=*)          -disable=* | --disable=*)
1328              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1329            
1330          -enable | --enable)          -enable | --enable)
1331              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1332          -enable=* | --enable=*)          -enable=* | --enable=*)
1333              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1334            
1335          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1336              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1337          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 1294  for ac_option in "$@" ; do Line 1341  for ac_option in "$@" ; do
1341  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1342  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1343  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1344            
1345          -cc | --cc)          -cc | --cc)
1346              ac_prev=CC ;;              ac_prev=CC ;;
1347          -cc=* | --cc=*)          -cc=* | --cc=*)
1348              CC=$ac_optarg ;;              CC=$ac_optarg ;;
1349            
1350          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1351              ac_prev=FC ;;              ac_prev=FC ;;
1352          -fc=* | --fc=*)          -fc=* | --fc=*)
1353              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1354            
1355          -fs | --fs)          -fs | --fs)
1356              ac_prev=FS ;;              ac_prev=FS ;;
1357          -fs=* | --fs=*)          -fs=* | --fs=*)
1358              FS=$ac_optarg ;;              FS=$ac_optarg ;;
1359            
1360          -fs90 | --fs90)          -fs90 | --fs90)
1361              ac_prev=FS90 ;;              ac_prev=FS90 ;;
1362          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1363              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
1364            
1365          -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )          -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1366              USE_R4=true ;;              USE_R4=true ;;
1367    
# Line 1322  for ac_option in "$@" ; do Line 1369  for ac_option in "$@" ; do
1369              IEEE=true ;;              IEEE=true ;;
1370          -noieee | --noieee)          -noieee | --noieee)
1371              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1372          -devel | --devel)          -devel | --devel)
1373              IEEE=true ; DEVEL=true ;;              IEEE=true ; DEVEL=true ;;
1374          -gsl | --gsl)          -gsl | --gsl)
1375              GSL=true ;;              GSL=true ;;
1376    
1377          -ts | --ts)          -ts | --ts)
# Line 1347  for ac_option in "$@" ; do Line 1394  for ac_option in "$@" ; do
1394          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1395              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1396              MPI=true ;;              MPI=true ;;
1397            
1398          -omp | --omp)          -omp | --omp)
1399              OMP=true ;;              OMP=true ;;
1400          -omp=* | --omp=*)          -omp=* | --omp=*)
1401              OMPFLAG=$ac_optarg              OMPFLAG=$ac_optarg
1402              OMP=true ;;              OMP=true ;;
1403            
1404          -ds | --ds)          -ds | --ds)
1405              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1406            
1407          -extra_flag | --extra_flag)          -extra_flag | --extra_flag)
1408              ac_prev=FEXTRAFLAGS ;;              ac_prev=FEXTRAFLAGS ;;
1409          -extra_flag=* | --extra_flag=*)          -extra_flag=* | --extra_flag=*)
1410              FEXTRAFLAGS=$ac_optarg ;;              FEXTRAFLAGS=$ac_optarg ;;
1411            
1412          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1413              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1414          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 1371  for ac_option in "$@" ; do Line 1418  for ac_option in "$@" ; do
1418              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1419          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1420              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1421            
1422          -ignoretime | -ignore_time | --ignoretime | --ignore_time)          -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1423              IGNORE_TIME="-DIGNORE_TIME" ;;              IGNORE_TIME="-DIGNORE_TIME" ;;
1424    
# Line 1382  for ac_option in "$@" ; do Line 1429  for ac_option in "$@" ; do
1429              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1430              usage              usage
1431              ;;              ;;
1432            
1433          *)          *)
1434              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1435              usage              usage
1436              ;;              ;;
1437            
1438      esac      esac
1439    
1440  done  done
1441    
1442    printf "  getting local config information:  "
1443    if test -f $gm_local ; then
1444        echo "using $gm_local"
1445        . $gm_local
1446    else
1447        echo "none found"
1448    fi
1449    
1450  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1451      echo      echo
1452      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
# Line 1522  EOF Line 1577  EOF
1577  fi  fi
1578  if test "x$GET_FC_VERSION" != x ; then  if test "x$GET_FC_VERSION" != x ; then
1579    echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE    echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1580    $FC $GET_FC_VERSION >> $LOGFILE 2> /dev/null    ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1581      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1582      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1583      if test -s genmake_fc_vers1 ; then
1584        cat genmake_fc_vers1 >> $LOGFILE
1585      else
1586        cat genmake_fc_vers2 >> $LOGFILE
1587      fi
1588    echo "<-- compiler version ----" >> $LOGFILE    echo "<-- compiler version ----" >> $LOGFILE
1589      rm -f genmake_fc_vers1 genmake_fc_vers2
1590  fi  fi
1591    
1592  if test "x$CC" = x ; then  if test "x$CC" = x ; then
# Line 1595  check_for_broken_Ff Line 1658  check_for_broken_Ff
1658    
1659  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1660        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1661        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI"
1662  fi  fi
1663  if test ! "x$OMP" = x ; then  if test ! "x$OMP" = x ; then
1664        echo "  Add OMPFLAG and turn on OpenMP cpp macros"        echo "  Add OMPFLAG and turn on OpenMP cpp macros"
# Line 1612  fi Line 1675  fi
1675  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1676        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
1677        if test ! "x$FOOLAD" = x ; then        if test ! "x$FOOLAD" = x ; then
1678              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1679        else        else
1680              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1681        fi        fi
# Line 1648  if test ! "x$PAPI" = x ; then Line 1711  if test ! "x$PAPI" = x ; then
1711            echo "  Sticking with PAPI flop summary per timestep!"            echo "  Sticking with PAPI flop summary per timestep!"
1712        else        else
1713            echo "  Turning on performance analysis with PAPI"            echo "  Turning on performance analysis with PAPI"
1714            echo "  Please make sure PAPIINC, PAPILIB are defined"            echo "  Please make sure PAPIINC, PAPILIB are defined"
1715            DEFINES="$DEFINES -DUSE_PAPI"            DEFINES="$DEFINES -DUSE_PAPI"
1716            INCLUDES="$INCLUDES $PAPIINC"            INCLUDES="$INCLUDES $PAPIINC"
1717            LIBS="$LIBS $PAPILIB"            LIBS="$LIBS $PAPILIB"
# Line 1660  if test ! "x$PCL" = x ; then Line 1723  if test ! "x$PCL" = x ; then
1723            echo "  Sticking with PCL flop summary per timestep!"            echo "  Sticking with PCL flop summary per timestep!"
1724        else        else
1725            echo "  Turning on performance analysis with PCL"            echo "  Turning on performance analysis with PCL"
1726            echo "  Please make sure PCLINC, PCLLIB are defined"            echo "  Please make sure PCLINC, PCLLIB are defined"
1727            DEFINES="$DEFINES -DUSE_PCL"            DEFINES="$DEFINES -DUSE_PCL"
1728            INCLUDES="$INCLUDES $PCLINC"            INCLUDES="$INCLUDES $PCLINC"
1729            LIBS="$LIBS $PCLLIB"            LIBS="$LIBS $PCLLIB"
# Line 1670  if test ! "x$HPMT" = x ; then Line 1733  if test ! "x$HPMT" = x ; then
1733        if test ! "x$PAPI" = x ; then        if test ! "x$PAPI" = x ; then
1734            echo "  PAPI and the HPM Toolkit cannot co-exist!"            echo "  PAPI and the HPM Toolkit cannot co-exist!"
1735            echo "  Sticking with PAPI!"            echo "  Sticking with PAPI!"
1736        else if test ! "x$PCL" = x ; then        else
1737            if test ! "x$PCL" = x ; then
1738            echo "  PCL and the HPM Toolkit cannot co-exist!"            echo "  PCL and the HPM Toolkit cannot co-exist!"
1739            echo "  Sticking with PCL!"            echo "  Sticking with PCL!"
1740        else          else
1741            echo "  Turning on performance analysis with the HPM Toolkit"            echo "  Turning on performance analysis with the HPM Toolkit"
1742            echo "  Please make sure HPMTINC, HPMTLIB are defined"            echo "  Please make sure HPMTINC, HPMTLIB are defined"
1743            DEFINES="$DEFINES -DUSE_LIBHPM"            DEFINES="$DEFINES -DUSE_LIBHPM"
1744            INCLUDES="$INCLUDES $HPMTINC"            INCLUDES="$INCLUDES $HPMTINC"
1745            LIBS="$LIBS $HPMTLIB"            LIBS="$LIBS $HPMTLIB"
1746        fi          fi
1747        fi        fi
1748  fi  fi
1749  if test ! "x$GSL" = x ; then  if test ! "x$GSL" = x ; then
# Line 1760  rm -f genmake_tcomp* Line 1824  rm -f genmake_tcomp*
1824  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1825  check_HAVE_CLOC  check_HAVE_CLOC
1826  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1827        DEFINES="$DEFINES -DHAVE_CLOC"
1828      echo "yes"      echo "yes"
1829  else  else
1830      echo "no"      echo "no"
# Line 1774  rm -f genmake_t* Line 1839  rm -f genmake_t*
1839  printf "  Can we unlimit the stack size using $FC...  "  printf "  Can we unlimit the stack size using $FC...  "
1840  check_HAVE_SETRLSTK  check_HAVE_SETRLSTK
1841  if test "x$HAVE_SETRLSTK" = xt ; then  if test "x$HAVE_SETRLSTK" = xt ; then
1842        DEFINES="$DEFINES -DHAVE_SETRLSTK"
1843      echo "yes"      echo "yes"
1844  else  else
1845      echo "no"      echo "no"
# Line 1783  rm -f genmake_t* Line 1849  rm -f genmake_t*
1849  printf "  Can we register a signal handler using $FC...  "  printf "  Can we register a signal handler using $FC...  "
1850  check_HAVE_SIGREG  check_HAVE_SIGREG
1851  if test "x$HAVE_SIGREG" = xt ; then  if test "x$HAVE_SIGREG" = xt ; then
1852        DEFINES="$DEFINES -DHAVE_SIGREG"
1853      echo "yes"      echo "yes"
1854  else  else
1855      echo "no"      echo "no"
# Line 1792  rm -f genmake_t* Line 1859  rm -f genmake_t*
1859  printf "  Can we use stat() through C calls...  "  printf "  Can we use stat() through C calls...  "
1860  check_HAVE_STAT  check_HAVE_STAT
1861  if test "x$HAVE_STAT" != x ; then  if test "x$HAVE_STAT" != x ; then
1862        DEFINES="$DEFINES -DHAVE_STAT"
1863      echo "yes"      echo "yes"
1864  else  else
1865      echo "no"      echo "no"
# Line 1801  rm -f genmake_t* Line 1869  rm -f genmake_t*
1869  printf "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
1870  check_netcdf_libs  check_netcdf_libs
1871  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
1872        DEFINES="$DEFINES -DHAVE_NETCDF"
1873        echo "yes"
1874    else
1875        echo "no"
1876    fi
1877    
1878    printf "  Can we create LAPACK-enabled binaries...  "
1879    check_lapack_libs
1880    if test "x$HAVE_LAPACK" != x ; then
1881        DEFINES="$DEFINES -DHAVE_LAPACK"
1882      echo "yes"      echo "yes"
1883  else  else
1884      echo "no"      echo "no"
# Line 1812  if test "x$EMBED_SRC" = xt ; then Line 1890  if test "x$EMBED_SRC" = xt ; then
1890  fi  fi
1891  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
1892      ENABLE="$ENABLE embed_files"      ENABLE="$ENABLE embed_files"
1893    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
1894  fi  fi
1895    
1896  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
# Line 1989  else Line 2068  else
2068          exit 1          exit 1
2069      else      else
2070          echo "    using PKG_LIST=\"$PKG_LIST\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2071          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2072          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2073          RETVAL=$?          RETVAL=$?
2074          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
# Line 2039  for i in $PACKAGES ; do Line 2118  for i in $PACKAGES ; do
2118      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2119      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2120          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2121          exit 1          exit 1
2122      fi      fi
2123      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2124  done  done
# Line 2084  else Line 2163  else
2163          echo "Error: problem encountered while building source files in pkg/mnc:"          echo "Error: problem encountered while building source files in pkg/mnc:"
2164          cat make_mnc.errors 1>&2          cat make_mnc.errors 1>&2
2165          if test "x$mnc_in" = x0 ; then          if test "x$mnc_in" = x0 ; then
2166              exit 1              exit 1
2167          else          else
2168              DISABLE="$DISABLE mnc"              DISABLE="$DISABLE mnc"
2169          fi          fi
# Line 2117  EOF Line 2196  EOF
2196      fi      fi
2197  fi  fi
2198    
2199    #  Check for package RADTRANS: if LAPACK is not available,
2200    #  then issue a warning that the direct radtrans solver is not available.
2201    if test "x$HAVE_LAPACK" != xt ; then
2202        echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1
2203        RETVAL=$?
2204        if test "x$RETVAL" = x0 ; then
2205            cat <<EOF
2206    *********************************************************************
2207    WARNING: the "radtrans" package was enabled but tests failed to
2208      compile LAPACK applications.  This means that the direct radtrans
2209      solver is not available and compilation will fail if it is enabled.
2210      If you want to use the direct solver, please check that:
2211    
2212      1) LAPACK is correctly installed for this compiler and
2213      2) the LIBS variable (within the "optfile") specifies the correct
2214         LAPACK library to link against.
2215    *********************************************************************
2216    EOF
2217        fi
2218    fi
2219    
2220  if  test "x${PKG_DEPEND}" != x ; then  if  test "x${PKG_DEPEND}" != x ; then
2221    echo "  applying package dependency rules"    echo "  applying package dependency rules"
2222    ck=    ck=
# Line 2162  if  test "x${PKG_DEPEND}" != x ; then Line 2262  if  test "x${PKG_DEPEND}" != x ; then
2262    
2263          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2264          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2265              #echo "   " $pname ": need to add :" $dname              #echo "   " $pname ": need to add :" $dname
2266              in_dis="f"              in_dis="f"
2267              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2268                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 2187  if  test "x${PKG_DEPEND}" != x ; then Line 2287  if  test "x${PKG_DEPEND}" != x ; then
2287              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2288              exit 1              exit 1
2289          fi          fi
2290          i=`echo "$i + 1" | bc -l`          i=`echo "$i + 1" | bc -l`
2291          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2292      done      done
2293      ck=$ck"t"      ck=$ck"t"
# Line 2228  for n in $names ; do Line 2328  for n in $names ; do
2328          done          done
2329          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2330              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2331              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2332          fi          fi
2333      fi      fi
2334  done  done
# Line 2241  for i in $PACKAGES ; do Line 2341  for i in $PACKAGES ; do
2341  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2342      case $i in      case $i in
2343          aim_v23)          aim_v23)
2344              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2345              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
2346              ;;              ;;
2347      esac      esac
# Line 2283  for i in $spaths ; do Line 2383  for i in $spaths ; do
2383      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2384          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2385          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2386          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2387          for n in $names ; do          for n in $names ; do
2388              test_for_package_in_cpp_options $CPP_OPTIONS $n              test_for_package_in_cpp_options $CPP_OPTIONS $n
2389          done          done
2390      fi      fi
2391      try="$i/CPP_EEOPTIONS.h"      try="$i/CPP_EEOPTIONS.h"
2392      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2393          echo "    found CPP_EEOPTIONS=\"$try\""          echo "    found CPP_EEOPTIONS=\"$try\""
2394          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2395  #**** not yet enabled ****  #**** not yet enabled ****
2396  #        test_for_mpi_in_cpp_eeoptions $try  #        test_for_mpi_in_cpp_eeoptions $try
2397  #**** not yet enabled ****  #**** not yet enabled ****
# Line 2437  for d in $alldirs ; do Line 2537  for d in $alldirs ; do
2537          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2538              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2539                  ignore_f=f                  ignore_f=f
2540                  case $d/$sf in                  case $d/$sf in
2541                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2542                          ignore_f=t                          ignore_f=t
2543                          ;;                          ;;
2544                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2545                          ignore_f=t                          ignore_f=t
2546                          ;;                          ;;
2547                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2548                          ignore_f=t                          ignore_f=t
2549                          ;;                          ;;
2550                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2551                          ignore_f=t                          ignore_f=t
2552                          ;;                          ;;
2553                    ./EMBEDDED_FILES.h)                    ./EMBEDDED_FILES.h)
2554                          ignore_f=t                          ignore_f=t
2555                          ;;                          ;;
2556                    *)                    *)
2557                          #  For the local directory *ONLY*,                          #  For the local directory *ONLY*,
2558                          #  ignore all soft-links                          #  ignore all soft-links
2559                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
# Line 2463  for d in $alldirs ; do Line 2563  for d in $alldirs ; do
2563                              deplist="$deplist $sf"                              deplist="$deplist $sf"
2564                          fi                          fi
2565                          ;;                          ;;
2566                  esac                  esac
2567                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2568                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2569                      case $extn in                      case $extn in
# Line 2510  for d in $alldirs ; do Line 2610  for d in $alldirs ; do
2610                          echo    " \\"  >> hsrclist.tmp                          echo    " \\"  >> hsrclist.tmp
2611                          printf " $sf" >> hsrclist.tmp                          printf " $sf" >> hsrclist.tmp
2612                          ;;                          ;;
2613                      flow)                      flow)
2614                          echo    " \\"  >> ad_flow_files.tmp                          echo    " \\"  >> ad_flow_files.tmp
2615                          printf " $sf" >> ad_flow_files.tmp                          printf " $sf" >> ad_flow_files.tmp
2616                          ;;                          ;;
# Line 2521  for d in $alldirs ; do Line 2621  for d in $alldirs ; do
2621      done      done
2622      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2623        if test "$d" != "." ; then        if test "$d" != "." ; then
2624          echo "" >> srclinks.tmp          echo "" >> srclinks.tmp
2625          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2626          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2627  # We need to make sure that the link isn't already there.  # We need to make sure that the link isn't already there.
# Line 2542  echo "" >> ad_flow_files.tmp Line 2642  echo "" >> ad_flow_files.tmp
2642  CMDLINE=$0  CMDLINE=$0
2643  for xx in "$@" ; do nw=`echo $xx | wc -w`  for xx in "$@" ; do nw=`echo $xx | wc -w`
2644      if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"      if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2645                          else CMDLINE="$CMDLINE '$xx'" ; fi                          else CMDLINE="$CMDLINE '$xx'" ; fi
2646  done  done
2647    
2648  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
# Line 2576  cat >>$MAKEFILE <<EOF Line 2676  cat >>$MAKEFILE <<EOF
2676  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2677  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2678  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2679  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2680  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2681  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 2650  NOOPTFILES = ${NOOPTFILES} Line 2748  NOOPTFILES = ${NOOPTFILES}
2748  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2749  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2750  LIBS = ${LIBS}  LIBS = ${LIBS}
2751  # Name of the Mekfile  # Name of the makefile
2752  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2753    # Name of the make program
2754    MAKE = ${MAKE}
2755    
2756  EOF  EOF
2757    
# Line 2675  echo >> $MAKEFILE Line 2775  echo >> $MAKEFILE
2775  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2776  echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE  echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2777  echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2778  echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE  echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2779  echo >> $MAKEFILE  echo >> $MAKEFILE
2780  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2781  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2782    
2783  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2784    
2785  all: \$(EXECUTABLE)  all: fwd_exe_target
2786    fwd_exe_target:
2787            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2788            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2789            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2790            @-rm -f ad_config.template
2791            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2792    
2793  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2794          @echo Creating \$@ ...          @echo Creating \$@ ...
2795          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2796    
2797  depend:  depend:
2798          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2799          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2800          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2801          -rm -f makedepend.out          -rm -f makedepend.out
2802    
# Line 2718  clean: Line 2825  clean:
2825    
2826  # remove most of the files that "make" and "make depend" generate  # remove most of the files that "make" and "make depend" generate
2827  Clean:  Clean:
2828          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2829          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2830          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2831          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2832          -rm -f genmake_warnings genmake_errors make.log          -rm -f genmake_warnings genmake_errors make.log
2833    
2834  # remove also the executable, files that "genmake2" generates (except Makefile)  # remove also the executable, files that "genmake2" generates (except Makefile)
2835  #         and output from a run (plus log files from testreport)  #         and output from a run (plus log files from testreport)
2836  CLEAN:  CLEAN:
2837          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2838          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.bak          -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2839          -rm -f $LOGFILE genmake_state genmake_*optfile          -rm -f $LOGFILE genmake_state genmake_*optfile
2840          -rm -f SIZE.h.mpi genmake.tr_log make.tr_log          -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2841          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
# Line 2746  cleanlinks: Line 2853  cleanlinks:
2853  # Special targets (SPECIAL_FILES) which are created by make  # Special targets (SPECIAL_FILES) which are created by make
2854  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2855          @echo Creating \$@ ...          @echo Creating \$@ ...
2856          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2857  AD_CONFIG.h:  AD_CONFIG.h:
2858          @echo Creating \$@ ...          @echo Creating \$@ ...
2859          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
2860  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
2861          @echo Creating \$@ ...          @echo Creating \$@ ...
2862          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
# Line 2858  rm -f adSrcFiles.tmp Line 2965  rm -f adSrcFiles.tmp
2965  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2966    
2967  # ... AD ...  # ... AD ...
2968  adall: \$(EXE_AD)  adall: ad_exe_target
2969  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
2970  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
2971    
2972  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)  ad_exe_target:
2973          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @echo Update AD_CONFIG.h and make \$(EXE_AD)
2974            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2975            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2976            @-rm -f ad_config.template
2977            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
2978    
2979    ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
2980            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2981          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2982          -rm -f ad_config.template          @-rm -f ad_config.template
2983          @make \$(F77_PP_SRC_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
2984          @make \$(FLOFILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
2985          cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
2986    
2987  ad_taf_output.$FS: ad_input_code.$FS  ad_taf_output.$FS: ad_input_code.$FS
2988          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
# Line 2880  adtafonly: Line 2994  adtafonly:
2994          ls -l ad_input_code_ad.$FS          ls -l ad_input_code_ad.$FS
2995          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2996    
2997  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)  \$(EXE_AD): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ad_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
2998          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2999    
3000  ad_tamc_output.$FS: ad_input_code.$FS  ad_tamc_output.$FS: ad_input_code.$FS
# Line 2896  adonlyfwd: Line 3010  adonlyfwd:
3010  adtrick:  adtrick:
3011          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3012    
3013    adobj: ad_taf_output.o \$(OBJFILES)
3014    
3015  # ... FTL ...  # ... FTL ...
3016  ftlall: ftl_taf  ftlall: ftl_exe_target
3017  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
3018  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
3019    
3020  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)  ftl_exe_target:
3021          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3022          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3023          -rm -f ftl_config.template          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3024          @make \$(F77_PP_SRC_FILES)          @-rm -f ad_config.template
3025          @make \$(AD_FLOW_FILES)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3026          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS  
3027    ftl_input_code.$FS: \$(AD_FILES)
3028            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3029            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3030            @-rm -f ad_config.template
3031            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3032            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3033            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3034    
3035  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_taf_output.$FS: ftl_input_code.$FS
3036          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
# Line 2919  ftltafonly: Line 3042  ftltafonly:
3042          ls -l ftl_input_code_ftl.$FS          ls -l ftl_input_code_ftl.$FS
3043          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3044    
3045  ftl_taf: ftl_taf_output.o \$(OBJFILES)  \$(EXE_FTL): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ftl_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3046          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
3047    
3048  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
3049          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
# Line 2949  svd_touch: Line 3072  svd_touch:
3072          touch ad_taf_output.$FS ftl_taf_output.$FS          touch ad_taf_output.$FS ftl_taf_output.$FS
3073          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3074          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3075          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3076          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3077          -rm -f ftl_config.template          @-rm -f ad_config.template
3078    
3079  EOF  EOF
3080    
# Line 3026  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod. Line 3149  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.
3149    
3150  .PHONY: adDepend  .PHONY: adDepend
3151  adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)  adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3152          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3153          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3154          -rm -f makedepend.out          -rm -f makedepend.out
3155    
# Line 3051  f95_test.out: f95_test_mods.f90 f95_test Line 3174  f95_test.out: f95_test_mods.f90 f95_test
3174          f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1          f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3175          f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1          f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3176    
3177  # the file included below is created by the  CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
 # postProcessor and its inclusion sets the  
 # variable POSTPROCESSEDFILES  
 # used below. Because the file is made during  
 # make it won't be read until the second (recursive)  
 # invocation in the rule below  
 -include postProcess.make  
3178    
3179  AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)  AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3180    
3181  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3182    
3183  postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)  \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
 ifeq (\$(MAKELEVEL),0)  
         \$(MAKE) adAll  
 else  
         touch \$@  
 endif  
   
 \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)  
 ifeq (\$(MAKELEVEL),1)  
3184          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
 else  
         touch \$@  
 endif  
   
 # makefile debug rule  
 openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90  
 .PHONY: openad  
3185    
3186  # create the module files  # create sources files modules from header files containing common blocks
3187  %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk  %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3188          ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk          ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3189    
3190  # create the header files  # create new header files with USE statements for the new modules made above
3191  %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk  %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3192          ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)          ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3193    
3194  # change everybody else to use the new module files:  # change the include directives of everybody to refer to  the new header files with the USE statements
3195  %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash  %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3196          ../OAD_support/cb2mUseModules.bash $< ${MPI}          ../OAD_support/cb2mUseModules.bash $< ${MPI}
3197    
# Line 3104  ad_output.txt: \$(EXE_AD) Line 3206  ad_output.txt: \$(EXE_AD)
3206          @printf 'running ... '          @printf 'running ... '
3207          @./\$(EXE_AD) > \$@          @./\$(EXE_AD) > \$@
3208    
 CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)  
3209  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3210          cat \$^ > \$@          cat \$^ > \$@
3211    
 # strip all comments and blanks to reduce  
 # the file size in order to reduce perl's memory requirements  
 ad_input_code_sf.f$FS90 : ad_input_code.f$FS90  
         cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@  
   
 # mfef90 preprocessing  
 # expand statement functions  
 # expose mfef90 specific substring handling  
 # add the w2f__types module  
 ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90  
         ./mfef90 -r8 -z -F -N132 \$<  
         mv \$<.B \$(basename \$<).B  
         ./whirl2f -openad \$(basename \$<).B  
         cat w2f__types.f90 \$(basename \$<).w2f.f > \$@  
   
3212  # canonicalizer  # canonicalizer
3213  ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py  ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3214          ./preProcess.py --timing --r8 -H -S \$< -o \$@          \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3215    
3216    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3217    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3218            cat \$< | sed -f ../OAD_support/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3219    
3220  # F -> WHIRL  # F -> WHIRL
3221  # note that the canonicalized version cuts off at col 72  ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3222  # doing this also for string constants which is ok as long          \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
 # as we are in fixed mode and cut of exactly there.  
 # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)  
 # characters respectively.  
 ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90  
         ./mfef90 -r8 -z -F \$<  
         mv \$<.B \$@  
3223    
3224  # WHIRL -> XAIF  # WHIRL -> XAIF
3225  ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif  ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3226          ./whirl2xaif -s -n --debug 1 -o \$@ \$<          \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3227    
3228  # XAIF -> XAIF'  # XAIF -> XAIF'
3229  ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver  ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3230          ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r          \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3231    
3232  # XAIF' -> WHIRL'  # XAIF' -> WHIRL'
3233  ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl  ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3234          ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<          \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3235    
3236  # WHIRL' -> F'  # WHIRL' -> F'
3237  ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be  ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3238          ./whirl2f -FLIST:ftn_file=\$@ -openad \$<          \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3239    
3240  # insert template directives  # insert template directives
3241  ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash  ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3242          ../OAD_support/insertTemplateDir.bash \$< \$@          ../OAD_support/insertTemplateDir.bash \$< \$@
3243    
3244  PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F  PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3245  # postprocess F'  # postprocess F'
3246  postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)  postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3247          # the target is a placeholder to signal execution of the rule          \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ../OAD_support/ad_inline.f \$<
3248            # the target is a placeholder to trigger a single execution of the rule
3249          touch \$@          touch \$@
3250          # this step also creates the file postProcess.make but we cannot  # put this so make knows about the postprocessing output
3251          # name it as the target or else make will try to remake it for  OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
         # the include directive above for any rule, e.g. make clean  
         ./postProcess.py --progress --timing --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<  
3252    
3253  # setup some links  # link the XAIF schema files
3254  %.xsd:  %.xsd:
3255          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3256    
 mfef90:  
         \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .  
   
3257  # link the support files:  # link the support files:
3258  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3259          \$(LN) ../OAD_support/\$@ .          \$(LN) ../OAD_support/\$@ .
3260    
3261  whirl2xaif xaif2whirl:  AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag \$(PPEXTRAS:.F=.f)
         \$(LN) \${OPENADFORTTK}/bin/\$@ .  
   
 preProcess.py postProcess.py:  
         \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .  
   
 whirl2f whirl2f_be:  
         \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .  
   
 oadDriver:  
         \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@  
   
 AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)  
3262    
3263  # ============ end OpenAD specific section ==============  # ============ end OpenAD specific section ==============
3264    
# Line 3235  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3303  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3303  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3304    
3305  # Create special header files  # Create special header files
3306  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3307  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3308      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3309  else  else
# Line 3249  else Line 3317  else
3317      fi      fi
3318  fi  fi
3319  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3320      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3321  fi  fi
3322    
3323  #  Write the "state" for future records  #  Write the "state" for future records

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