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revision 1.221 by jmc, Fri Jun 24 22:03:39 2011 UTC revision 1.248 by jmc, Thu Jan 24 19:07:04 2013 UTC
# Line 17  Usage: "$0" [OPTIONS] Line 17  Usage: "$0" [OPTIONS]
17    where [OPTIONS] can be:    where [OPTIONS] can be:
18    
19      -help | --help | -h | --h      -help | --help | -h | --h
20            Print this help message and exit.            Print this help message and exit.
21    
22      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24            Use "NAME" as the adoptfile.  By default, the file at            Use "NAME" as the adoptfile.  By default, the file at
25            "tools/adjoint_options/adjoint_default" will be used.            "tools/adjoint_options/adjoint_default" will be used.
26    
27      -nooptfile | --nooptfile      -nooptfile | --nooptfile
28        -optfile NAME | --optfile NAME | -of NAME | --of NAME        -optfile NAME | --optfile NAME | -of NAME | --of NAME
29        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30            Use "NAME" as the optfile.  By default, an attempt will be            Use "NAME" as the optfile.  By default, an attempt will be
31            made to find an appropriate "standard" optfile in the            made to find an appropriate "standard" optfile in the
32            tools/build_options/ directory.            tools/build_options/ directory.
33    
34      -pdepend NAME | --pdepend NAME      -pdepend NAME | --pdepend NAME
35        -pdepend=NAME | --pdepend=NAME        -pdepend=NAME | --pdepend=NAME
36            Get package dependency information from "NAME".            Get package dependency information from "NAME".
37    
38      -pgroups NAME | --pgroups NAME      -pgroups NAME | --pgroups NAME
39        -pgroups=NAME | --pgroups=NAME        -pgroups=NAME | --pgroups=NAME
40            Get the package groups information from "NAME".            Get the package groups information from "NAME".
41    
42      -bash NAME      -bash NAME
43            Explicitly specify the Bourne or BASH shell to use            Explicitly specify the Bourne or BASH shell to use
44    
45      -make NAME | -m NAME      -make NAME | -m NAME
46        --make=NAME | -m=NAME        --make=NAME | -m=NAME
47            Use "NAME" for the MAKE program. The default is "make" but            Use "NAME" for the MAKE program. The default is "make" but
48            many platforms, "gmake" is the preferred choice.            many platforms, "gmake" is the preferred choice.
49    
50      -makefile NAME | -mf NAME      -makefile NAME | -mf NAME
51        --makefile=NAME | -mf=NAME        --makefile=NAME | -mf=NAME
52            Call the makefile "NAME".  The default is "Makefile".            Call the makefile "NAME".  The default is "Makefile".
53    
54      -makedepend NAME | -md NAME      -makedepend NAME | -md NAME
55        --makedepend=NAME | -md=NAME        --makedepend=NAME | -md=NAME
56            Use "NAME" for the MAKEDEPEND program.            Use "NAME" for the MAKEDEPEND program.
57    
58      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60            Specify the location of the MITgcm ROOTDIR as "NAME".            Specify the location of the MITgcm ROOTDIR as "NAME".
61            By default, genamke will try to find the location by            By default, genamke will try to find the location by
62            looking in parent directories (up to the 5th parent).            looking in parent directories (up to the 5th parent).
63    
64      -mods NAME | --mods NAME | -mo NAME | --mo NAME      -mods NAME | --mods NAME | -mo NAME | --mo NAME
65        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66            Here, "NAME" specifies a list of directories that are            Here, "NAME" specifies a list of directories that are
67            used for additional source code.  Files found in the            used for additional source code.  Files found in the
68            "mods list" are given preference over files of the same            "mods list" are given preference over files of the same
69            name found elsewhere.            name found elsewhere.
70    
71      -disable NAME | --disable NAME      -disable NAME | --disable NAME
72        -disable=NAME | --disable=NAME        -disable=NAME | --disable=NAME
73            Here "NAME" specifies a list of packages that we don't            Here "NAME" specifies a list of packages that we don't
74            want to use.  If this violates package dependencies,            want to use.  If this violates package dependencies,
75            genamke will exit with an error message.            genamke will exit with an error message.
76    
77      -enable NAME | --enable NAME      -enable NAME | --enable NAME
78        -enable=NAME | --enable=NAME        -enable=NAME | --enable=NAME
79            Here "NAME" specifies a list of packages that we wish            Here "NAME" specifies a list of packages that we wish
80            to specifically enable.  If this violates package            to specifically enable.  If this violates package
81            dependencies, genamke will exit with an error message.            dependencies, genamke will exit with an error message.
82    
83      -standarddirs NAME | --standarddirs NAME      -standarddirs NAME | --standarddirs NAME
84        -standarddirs=NAME | --standarddirs=NAME        -standarddirs=NAME | --standarddirs=NAME
85            Here, "NAME" specifies a list of directories to be            Here, "NAME" specifies a list of directories to be
86            used as the "standard" code.            used as the "standard" code.
87    
88      -fortran NAME | --fortran NAME | -fc NAME | --fc NAME      -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89        -fc=NAME | --fc=NAME        -fc=NAME | --fc=NAME
90            Use "NAME" as the fortran compiler.  By default, genmake            Use "NAME" as the fortran compiler.  By default, genmake
91            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
92            "usual suspects" such as g77, f77, etc.            "usual suspects" such as g77, f77, etc.
93    
94      -cc NAME | --cc NAME | -cc=NAME | --cc=NAME      -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95            Use "NAME" as the C compiler.  By default, genmake            Use "NAME" as the C compiler.  By default, genmake
96            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
97            "usual suspects" such as gcc, c89, cc, etc.            "usual suspects" such as gcc, c89, cc, etc.
98    
99      -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4      -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100            Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)            Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101            *only* works if CPP_EEOPTIONS.h allows this.            *only* works if CPP_EEOPTIONS.h allows this.
102    
103      -ignoretime | -ignore_time | --ignoretime | --ignore_time      -ignoretime | -ignore_time | --ignoretime | --ignore_time
104            Ignore all the "wall clock" routines entirely.  This will            Ignore all the "wall clock" routines entirely.  This will
105            not in any way hurt the model results -- it simply means            not in any way hurt the model results -- it simply means
106            that the code that checks how long the model spends in            that the code that checks how long the model spends in
107            various routines will give junk values.            various routines will give junk values.
108    
109      -ts | --ts      -ts | --ts
110            Produce timing information per timestep            Produce timing information per timestep
111      -papis | --papis      -papis | --papis
112            Produce summary MFlop/s (and IPC) with PAPI per timestep            Produce summary MFlop/s (and IPC) with PAPI per timestep
113      -pcls | --pcls      -pcls | --pcls
114            Produce summary MFlop/s etc. with PCL per timestep            Produce summary MFlop/s etc. with PCL per timestep
115      -foolad | --foolad      -foolad | --foolad
116            Fool the AD code generator            Fool the AD code generator
117      -papi | --papi      -papi | --papi
118            Performance analysis with PAPI            Performance analysis with PAPI
119      -pcl | --pcl      -pcl | --pcl
120            Performance analysis with PCL            Performance analysis with PCL
121      -hpmt | --hpmt      -hpmt | --hpmt
122            Performance analysis with the HPM Toolkit            Performance analysis with the HPM Toolkit
123    
124      -ieee | --ieee      -ieee | --ieee
125            use IEEE numerics.  Note that this option *only* works            use IEEE numerics.  Note that this option *only* works
126            if it is supported by the OPTFILE that is being used.            if it is supported by the OPTFILE that is being used.
127      -devel | --devel      -devel | --devel
128            Add additional warning and debugging flags for development            Add additional warning and debugging flags for development
129            (if supported by the OPTFILE); also switch to IEEE numerics.            (if supported by the OPTFILE); also switch to IEEE numerics.
130      -gsl | --gsl      -gsl | --gsl
131            Use GSL to control floating point rounding and precision            Use GSL to control floating point rounding and precision
132    
133      -mpi | --mpi      -mpi | --mpi
134            Include MPI header files and link to MPI libraries            Include MPI header files and link to MPI libraries
135      -mpi=PATH | --mpi=PATH      -mpi=PATH | --mpi=PATH
136            Include MPI header files and link to MPI libraries using MPI_ROOT            Include MPI header files and link to MPI libraries using MPI_ROOT
137            set to PATH. i.e. Include files from \$PATH/include, link to libraries            set to PATH. i.e. Include files from \$PATH/include, link to libraries
138            from \$PATH/lib and use binaries from \$PATH/bin.            from \$PATH/lib and use binaries from \$PATH/bin.
139    
140      -omp | --omp      -omp | --omp
141            Activate OpenMP code + use Compiler option OMPFLAG            Activate OpenMP code + use Compiler option OMPFLAG
142      -omp=OMPFLAG | --omp=OMPFLAG      -omp=OMPFLAG | --omp=OMPFLAG
143            Activate OpenMP code + use Compiler option OMPFLAG            Activate OpenMP code + use Compiler option OMPFLAG
144    
145      -es | --es | -embed-source | --embed-source      -es | --es | -embed-source | --embed-source
146            Embed a tarball containing the full source code            Embed a tarball containing the full source code
147            (including the Makefile, etc.) used to build the            (including the Makefile, etc.) used to build the
148            executable [off by default]            executable [off by default]
149    
150      -ds | --ds      -ds | --ds
151            Report genmake internal variables status (DUMPSTATE)            Report genmake internal variables status (DUMPSTATE)
152            to file "genmake_state" (for debug purpose)            to file "genmake_state" (for debug purpose)
153    
154    While it is most often a single word, the "NAME" variables specified    While it is most often a single word, the "NAME" variables specified
155    above can in many cases be a space-delimited string such as:    above can in many cases be a space-delimited string such as:
# Line 174  EOF Line 174  EOF
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
175      cpp_options=$1      cpp_options=$1
176      pkg=$2      pkg=$2
177      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
178      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
179      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
180      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"  
181  }  }
182    
183  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
184  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
185  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
186      cpp_options=$1      cpp_options=$1
187      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
188      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"  
189  }  }
190    
191  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 203  test_for_mpi_in_cpp_eeoptions() { Line 193  test_for_mpi_in_cpp_eeoptions() {
193  test_for_string_in_file() {  test_for_string_in_file() {
194      file=$1      file=$1
195      strng=$2      strng=$2
196      grep -i "$strng" $file > /dev/null 2>&1      grep "$strng" $file > /dev/null 2>&1
197      RETVAL=$?      RETVAL=$?
198      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
199          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
200          grep -i "$strng" $file          grep -i "$strng" $file
201          exit 99          exit 99
202      fi      fi
203      return 0      return 0
# Line 297  EOF Line 287  EOF
287  .F.$tfs:  .F.$tfs:
288          $LN \$< \$@          $LN \$< \$@
289  EOF  EOF
290      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
291      RETVAL=$?      RETVAL=$?
292      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
293          if test "x$FS" = x ; then          if test "x$FS" = x ; then
# Line 305  EOF Line 295  EOF
295              FS90='fr9'              FS90='fr9'
296              check_for_broken_Ff              check_for_broken_Ff
297          else          else
298              cat <<EOF 2>&1              echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
299  ERROR: Your file system cannot distinguish between *.F and *.f files              echo "       see simple makefile: '$MAKEFILE' (left here)"
300    (fails the "make/ln" test) and this program cannot find a suitable              echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
301    replacement extension.  Please try a different build environment or              echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
302    contact the <MITgcm-support@mitgcm.org> list for help.              echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
303                echo ""
 EOF  
304              exit -1              exit -1
305              return              return
306          fi          fi
# Line 384  EOF Line 373  EOF
373        stop        stop
374        end        end
375  EOF  EOF
376          makedepend genmake_tc.f > /dev/null 2>&1          makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
377          RV1=$?          RV1=$?
378          test -f $MAKEFILE  &&  rm -f $MAKEFILE          test -f $MAKEFILE  &&  rm -f $MAKEFILE
379          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
# Line 412  build_cyrus_makedepend()  { Line 401  build_cyrus_makedepend()  {
401      (      (
402          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
403              &&  ./configure > /dev/null 2>&1  \              &&  ./configure > /dev/null 2>&1  \
404              &&  make > /dev/null 2>&1              &&  $MAKE > /dev/null 2>&1
405          if test -x ./makedepend.exe ; then          if test -x ./makedepend.exe ; then
406              $LN ./makedepend.exe ./makedepend              $LN ./makedepend.exe ./makedepend
407          fi          fi
# Line 436  build_embed_encode() Line 425  build_embed_encode()
425  {  {
426      printf "  building the embed-encode utility...  "      printf "  building the embed-encode utility...  "
427      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
428          if test ! -d "$ROOTDIR/tools/embed_encode" ; then          if test ! -d "$ROOTDIR/tools/embed_encode" ; then
429              echo              echo
430              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
431              echo              echo
432              EMBED_SRC=f              EMBED_SRC=f
433              return 1              return 1
434          fi          fi
435          clist="cc gcc c89 $CC"          clist="cc gcc c89 $CC"
436          for ic in $clist ; do          for ic in $clist ; do
437              comm="$ic -o encode_files encode_files.c"              comm="$ic -o encode_files encode_files.c"
# Line 450  build_embed_encode() Line 439  build_embed_encode()
439              RETVAL=$?              RETVAL=$?
440              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
441                  echo "OK"                  echo "OK"
                 DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
442                  return 0                  return 0
443              fi              fi
444          done          done
# Line 462  build_embed_encode() Line 450  build_embed_encode()
450          return 1          return 1
451      fi      fi
452      echo "OK"      echo "OK"
     DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
453  }  }
454    
455  #  look for possible C compilers  #  look for possible C compilers
# Line 580  EOF Line 567  EOF
567      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
568          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
569          if test ! -r $OPTFILE ; then          if test ! -r $OPTFILE ; then
570               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
571          fi          fi
572      fi      fi
573    
574      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
# Line 599  Error: No options file was found in:  $R Line 586  Error: No options file was found in:  $R
586  EOF  EOF
587          exit 1          exit 1
588      fi      fi
   
 #     # look for possible MPI libraries  
 #     mpi_libs=  
 #     mpi_fort=`which mpif77 2>/dev/null`  
 #     RETVAL=$?  
 #     if test "x${RETVAL}" = x0 ; then  
 #       cat >>test.f <<EOF  
 #       PROGRAM HELLO  
 #       DO 10, I=1,10  
 #       PRINT *,'Hello World'  
 #    10 CONTINUE  
 #       STOP  
 #       END  
 # EOF  
 #       eval "$mpi_fort -showme test.f > out"  
 #       RETVAL=$?  
 #       if test "x${RETVAL}" = x0 ; then  
 #           a=`cat out`  
 #           for i in $a ; do  
 #               case $i in  
 #                   -*)  
 #                       mpi_libs="$mpi_libs $i" ;;  
 #               esac  
 #           done  
 #           echo "The MPI libs appear to be:"  
 #           echo "  "$mpi_libs  
 #       fi  
 #       rm -f test.f out  
 #     fi  
589  }  }
590    
591  #  Parse the package dependency information  #  Parse the package dependency information
# Line 652  get_fortran_c_namemangling()  { Line 610  get_fortran_c_namemangling()  {
610    
611      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
612      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
613          return 0          return 0
614      fi      fi
615      echo " running: get_fortran_c_namemangling()" >> $LOGFILE      echo " running: get_fortran_c_namemangling()" >> $LOGFILE
616    
# Line 784  EOF Line 742  EOF
742      RETVAL=$?      RETVAL=$?
743      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
744          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
745      fi      fi
746      rm -f genmake_tc*      rm -f genmake_tc*
747      echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE      echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
# Line 846  EOF Line 803  EOF
803      RETVAL=$?      RETVAL=$?
804      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
805          HAVE_SIGREG=t          HAVE_SIGREG=t
         DEFINES="$DEFINES -DHAVE_SIGREG"  
806      fi      fi
807      rm -f genmake_tc*      rm -f genmake_tc*
808      echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE      echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
809  }  }
810    
811  check_HAVE_SETRLSTK()  {  check_HAVE_SETRLSTK()  {
     if test "x$HAVE_SETRLSTK" = xt ; then  
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
         return  
     fi    
812      if test ! "x$HAVE_SETRLSTK" = x ; then      if test ! "x$HAVE_SETRLSTK" = x ; then
813          return          return
814      fi      fi
# Line 894  EOF Line 846  EOF
846      RETVAL=$?      RETVAL=$?
847      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
848          HAVE_SETRLSTK=t          HAVE_SETRLSTK=t
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
849      fi      fi
850      rm -f genmake_tc*      rm -f genmake_tc*
851      echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE      echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
# Line 941  EOF Line 892  EOF
892      RETVAL=$?      RETVAL=$?
893      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
894          HAVE_STAT=t          HAVE_STAT=t
         DEFINES="$DEFINES -DHAVE_STAT"  
895      fi      fi
896      rm -f genmake_tc*      rm -f genmake_tc*
897      echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE      echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
# Line 957  check_netcdf_libs()  { Line 907  check_netcdf_libs()  {
907        program fgennc        program fgennc
908  #include "netcdf.inc"  #include "netcdf.inc"
909  EOF  EOF
910      if test ! "x$MPI" = x ; then     #if test ! "x$MPI" = x ; then
911          echo '#include "mpif.h"' >> genmake_tnc.F     #    echo '#include "mpif.h"' >> genmake_tnc.F
912      fi     #fi
913      cat <<EOF >> genmake_tnc.F      cat <<EOF >> genmake_tnc.F
914        integer iret, ncid, xid        integer iret, ncid, xid
915        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
# Line 1039  EOF Line 989  EOF
989      echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE      echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
990  }  }
991    
992    check_lapack_libs()  {
993        if test ! "x$SKIP_LAPACK_CHECK" = x ; then
994            return
995        fi
996        echo >> $LOGFILE
997        echo "running: check_lapack_libs()" >> $LOGFILE
998        cat <<EOF > genmake_tla.F
999          program fgenla
1000          integer info
1001          integer ipiv( 2 )
1002          double precision ab( 4, 2 ), b( 2 )
1003          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1004          data b / 1., 1. /
1005          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1006          IF (info .NE. 0) write(*,*) 'Error:', info
1007          write(*,*) b
1008          end
1009    EOF
1010        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1011        cat genmake_tla.F >> genmake_tla.log
1012        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1013        RET_CPP=f
1014        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1015        echo "$COMM" >> genmake_tla.log
1016        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1017        if test "x$RET_CPP" = xf ; then
1018            echo "  WARNING: CPP failed to pre-process the lapack test." \
1019                >> genmake_tla.log
1020            echo "    Please check that \$INCLUDES is properly set." \
1021                >> genmake_tla.log
1022        fi
1023        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1024        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1025        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1026            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1027        RET_COMPILE=$?
1028        cat genmake_tla.log >> $LOGFILE
1029    
1030        # test program execution not always possible (see check_netcdf_libs)
1031        #
1032        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1033        #RETVAL=$?
1034        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1035    
1036        if test "x$RET_COMPILE" = x0 ; then
1037            HAVE_LAPACK=t
1038            echo "check_lapack: successful" >> $LOGFILE
1039        else
1040            # try again with "-llapack" added to the libs
1041            echo "==> try again with added '-llapack'" > genmake_tla.log
1042            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1043            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1044            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1045            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1046                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1047                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1048            RET_COMPILE=$?
1049            echo >> $LOGFILE
1050            cat genmake_tla.log >> $LOGFILE
1051            if test "x$RET_COMPILE" = x0 ; then
1052                LIBS="$LIBS -llapack"
1053                HAVE_LAPACK=t
1054                echo "check_lapack: successful" >> $LOGFILE
1055            else
1056            # try again with "-lf77blas -lcblas" added to the libs
1057                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1058                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1059                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1060                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1061                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1062                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1063                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1064                RET_COMPILE=$?
1065                echo >> $LOGFILE
1066                cat genmake_tla.log >> $LOGFILE
1067                if test "x$RET_COMPILE" = x0 ; then
1068                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1069                    HAVE_LAPACK=t
1070                    echo "check_lapack: successful" >> $LOGFILE
1071                else
1072                # try again with "-latlas" added to the libs
1073                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1074                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1075                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1076                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1077                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1078                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1079                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1080                    RET_COMPILE=$?
1081                    echo >> $LOGFILE
1082                    cat genmake_tla.log >> $LOGFILE
1083                    if test "x$RET_COMPILE" = x0 ; then
1084                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1085                        HAVE_LAPACK=t
1086                        echo "check_lapack: successful" >> $LOGFILE
1087                    fi
1088                fi
1089            fi
1090        fi
1091        rm -f genmake_tla*
1092        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1093    }
1094    
1095    check_HAVE_FLUSH()  {
1096        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1097            return
1098        fi
1099        echo >> $LOGFILE
1100        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1101        cat <<EOF > genmake_tflsh.$FS
1102          program fgenflsh
1103          integer iounit
1104          character*9 fname
1105          iounit = 26
1106          fname = 'tmp.tflsh'
1107          open(iounit,FILE=fname,STATUS='unknown')
1108          write(iounit,*) 'genmake_tflsh: hello'
1109          call flush(iounit)
1110          close(iounit)
1111          end
1112    EOF
1113        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1114        cat genmake_tflsh.$FS >> genmake_tflsh.log
1115        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1116    
1117        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1118        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1119        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1120            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1121        RET_COMPILE=$?
1122    
1123        if test "x$RET_COMPILE" = x0 ; then
1124            HAVE_FLUSH=t
1125            #cat genmake_tflsh.log >> $LOGFILE
1126            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1127        else
1128            HAVE_FLUSH=f
1129            cat genmake_tflsh.log >> $LOGFILE
1130        fi
1131        rm -f genmake_tflsh*
1132        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1133    }
1134    
1135  ###############################################################################  ###############################################################################
1136  #   Sequential part of script starts here  #   Sequential part of script starts here
# Line 1096  GSL= Line 1188  GSL=
1188  DEVEL=  DEVEL=
1189  HAVE_TEST_L=  HAVE_TEST_L=
1190    
1191    # comment this line out to enable lapack test
1192    SKIP_LAPACK_CHECK=t
1193    
1194  # DEFINES checked by test compilation or command-line  # DEFINES checked by test compilation or command-line
1195  HAVE_SYSTEM=  HAVE_SYSTEM=
1196  HAVE_FDATE=  HAVE_FDATE=
# Line 1106  HAVE_STAT= Line 1201  HAVE_STAT=
1201  HAVE_NETCDF=  HAVE_NETCDF=
1202  HAVE_ETIME=  HAVE_ETIME=
1203  IGNORE_TIME=  IGNORE_TIME=
1204    HAVE_LAPACK=
1205    HAVE_FLUSH=
1206    
1207  MODS=  MODS=
1208  TOOLSDIR=  TOOLSDIR=
# Line 1113  SOURCEDIRS= Line 1210  SOURCEDIRS=
1210  INCLUDEDIRS=  INCLUDEDIRS=
1211  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1212    
1213    #- local config file
1214    gm_local="genmake_local"
1215    
1216  G2ARGS=  G2ARGS=
1217  BASH=  BASH=
1218  PWD=`pwd`  PWD=`pwd`
# Line 1128  MACHINE=`uname -a` Line 1228  MACHINE=`uname -a`
1228  EXECUTABLE=  EXECUTABLE=
1229  EXEHOOK=  EXEHOOK=
1230  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1231  IEEE=  IEEE=
1232  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1233      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
# Line 1150  SVD_TAMC_FLAGS= Line 1249  SVD_TAMC_FLAGS=
1249  TAMC_EXTRA=  TAMC_EXTRA=
1250    
1251  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1252  gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS MAKEFILE MAKEDEPEND PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1253  gm_s2="FC CC USE_R4 TS PAPIS PCLS PAPI PCL HPMT IEEE DEVEL GSL MPI OMP DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1254    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1255    
1256  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1257  gm_s3="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1258  gm_s4="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1259  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1260  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1261  gm_s7="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1262    
1263  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1264  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1265  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1266  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA"
1267    
1268  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1269  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1270    
1271  cat <<EOF  cat <<EOF
# Line 1184  LOGFILE="genmake.log" Line 1284  LOGFILE="genmake.log"
1284  rm -f genmake_state genmake_*optfile $LOGFILE  rm -f genmake_state genmake_*optfile $LOGFILE
1285    
1286  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 printf "  getting local config information:  "  
 if test -f $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1287    
1288  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1289  #parse_options  #parse_options
# Line 1212  for ac_option in "$@" ; do Line 1302  for ac_option in "$@" ; do
1302      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1303    
1304      case $ac_option in      case $ac_option in
1305            
1306          -help | --help | -h | --h)          -help | --help | -h | --h)
1307              usage ;;              usage ;;
1308            
1309          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1310              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1311          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1312              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1313          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1314              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1315            
1316          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1317              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1318          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1319              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1320            
1321          -pdepend | --pdepend)          -pdepend | --pdepend)
1322              ac_prev=PKG_DEPEND ;;              ac_prev=PKG_DEPEND ;;
1323          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1324              PKG_DEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1325            
1326          -pgroups | --pgroups)          -pgroups | --pgroups)
1327              ac_prev=PKG_GROUPS ;;              ac_prev=PKG_GROUPS ;;
1328          -pgroups=* | --pgroups=*)          -pgroups=* | --pgroups=*)
1329              PKG_GROUPS=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1330            
1331          -make | --make | -m | --m)          -make | --make | -m | --m)
1332              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1333          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1334              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1335            
1336          -bash | --bash)          -bash | --bash)
1337              ac_prev=BASH ;;              ac_prev=BASH ;;
1338          -bash=* | --bash=*)          -bash=* | --bash=*)
1339              BASH=$ac_optarg ;;              BASH=$ac_optarg ;;
1340            
1341          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1342              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1343          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
1344              MAKEDEPEND=$ac_optarg ;;              MAKEDEPEND=$ac_optarg ;;
1345            
1346          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -mf | --mf)
1347              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1348          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1349              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1350            
1351          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1352              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1353              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1354              echo              echo
1355              usage              usage
1356              ;;              ;;
1357            
1358          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1359              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1360          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1361              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1362            
1363          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1364              ac_prev=MODS ;;              ac_prev=MODS ;;
1365          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1366              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1367            
1368          -disable | --disable)          -disable | --disable)
1369              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1370          -disable=* | --disable=*)          -disable=* | --disable=*)
1371              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1372            
1373          -enable | --enable)          -enable | --enable)
1374              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1375          -enable=* | --enable=*)          -enable=* | --enable=*)
1376              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1377            
1378          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1379              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1380          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 1294  for ac_option in "$@" ; do Line 1384  for ac_option in "$@" ; do
1384  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1385  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1386  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1387            
1388          -cc | --cc)          -cc | --cc)
1389              ac_prev=CC ;;              ac_prev=CC ;;
1390          -cc=* | --cc=*)          -cc=* | --cc=*)
1391              CC=$ac_optarg ;;              CC=$ac_optarg ;;
1392            
1393          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1394              ac_prev=FC ;;              ac_prev=FC ;;
1395          -fc=* | --fc=*)          -fc=* | --fc=*)
1396              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1397            
1398          -fs | --fs)          -fs | --fs)
1399              ac_prev=FS ;;              ac_prev=FS ;;
1400          -fs=* | --fs=*)          -fs=* | --fs=*)
1401              FS=$ac_optarg ;;              FS=$ac_optarg ;;
1402            
1403          -fs90 | --fs90)          -fs90 | --fs90)
1404              ac_prev=FS90 ;;              ac_prev=FS90 ;;
1405          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1406              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
1407            
1408          -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )          -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1409              USE_R4=true ;;              USE_R4=true ;;
1410    
# Line 1322  for ac_option in "$@" ; do Line 1412  for ac_option in "$@" ; do
1412              IEEE=true ;;              IEEE=true ;;
1413          -noieee | --noieee)          -noieee | --noieee)
1414              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1415          -devel | --devel)          -devel | --devel)
1416              IEEE=true ; DEVEL=true ;;              IEEE=true ; DEVEL=true ;;
1417          -gsl | --gsl)          -gsl | --gsl)
1418              GSL=true ;;              GSL=true ;;
1419    
1420          -ts | --ts)          -ts | --ts)
# Line 1347  for ac_option in "$@" ; do Line 1437  for ac_option in "$@" ; do
1437          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1438              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1439              MPI=true ;;              MPI=true ;;
1440            
1441          -omp | --omp)          -omp | --omp)
1442              OMP=true ;;              OMP=true ;;
1443          -omp=* | --omp=*)          -omp=* | --omp=*)
1444              OMPFLAG=$ac_optarg              OMPFLAG=$ac_optarg
1445              OMP=true ;;              OMP=true ;;
1446            
1447          -ds | --ds)          -ds | --ds)
1448              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1449            
1450            -extra_flag | --extra_flag)
1451                ac_prev=FEXTRAFLAGS ;;
1452            -extra_flag=* | --extra_flag=*)
1453                FEXTRAFLAGS=$ac_optarg ;;
1454    
1455          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1456              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1457          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 1366  for ac_option in "$@" ; do Line 1461  for ac_option in "$@" ; do
1461              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1462          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1463              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1464            
1465          -ignoretime | -ignore_time | --ignoretime | --ignore_time)          -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1466              IGNORE_TIME="-DIGNORE_TIME" ;;              IGNORE_TIME="-DIGNORE_TIME" ;;
1467    
# Line 1377  for ac_option in "$@" ; do Line 1472  for ac_option in "$@" ; do
1472              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1473              usage              usage
1474              ;;              ;;
1475            
1476          *)          *)
1477              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1478              usage              usage
1479              ;;              ;;
1480            
1481      esac      esac
1482    
1483  done  done
1484    
1485    printf "  getting local config information:  "
1486    if test -f $gm_local ; then
1487        echo "using $gm_local"
1488        . $gm_local
1489    else
1490        echo "none found"
1491    fi
1492    
1493  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1494      echo      echo
1495      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
# Line 1440  if test "x$MAKEFILE" = x ; then Line 1543  if test "x$MAKEFILE" = x ; then
1543      MAKEFILE="Makefile"      MAKEFILE="Makefile"
1544  fi  fi
1545    
1546  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:"
1547  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1548      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1549          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
# Line 1469  if test "x$OPTFILE" != xNONE ; then Line 1572  if test "x$OPTFILE" != xNONE ; then
1572      fi      fi
1573  fi  fi
1574    
1575  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1576  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1577      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
1578          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
# Line 1517  EOF Line 1620  EOF
1620  fi  fi
1621  if test "x$GET_FC_VERSION" != x ; then  if test "x$GET_FC_VERSION" != x ; then
1622    echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE    echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1623    $FC $GET_FC_VERSION >> $LOGFILE 2>&1    ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1624      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1625      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1626      if test -s genmake_fc_vers1 ; then
1627        cat genmake_fc_vers1 >> $LOGFILE
1628      else
1629        cat genmake_fc_vers2 >> $LOGFILE
1630      fi
1631    echo "<-- compiler version ----" >> $LOGFILE    echo "<-- compiler version ----" >> $LOGFILE
1632      rm -f genmake_fc_vers1 genmake_fc_vers2
1633  fi  fi
1634    
1635  if test "x$CC" = x ; then  if test "x$CC" = x ; then
# Line 1590  check_for_broken_Ff Line 1701  check_for_broken_Ff
1701    
1702  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1703        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1704        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI"
1705    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1706    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1707  fi  fi
1708  if test ! "x$OMP" = x ; then  if test ! "x$OMP" = x ; then
1709        echo "  Add OMPFLAG and turn on OpenMP cpp macros"        echo "  Add OMPFLAG and turn on OpenMP cpp macros"
# Line 1607  fi Line 1720  fi
1720  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1721        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
1722        if test ! "x$FOOLAD" = x ; then        if test ! "x$FOOLAD" = x ; then
1723              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1724        else        else
1725              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1726        fi        fi
# Line 1643  if test ! "x$PAPI" = x ; then Line 1756  if test ! "x$PAPI" = x ; then
1756            echo "  Sticking with PAPI flop summary per timestep!"            echo "  Sticking with PAPI flop summary per timestep!"
1757        else        else
1758            echo "  Turning on performance analysis with PAPI"            echo "  Turning on performance analysis with PAPI"
1759            echo "  Please make sure PAPIINC, PAPILIB are defined"            echo "  Please make sure PAPIINC, PAPILIB are defined"
1760            DEFINES="$DEFINES -DUSE_PAPI"            DEFINES="$DEFINES -DUSE_PAPI"
1761            INCLUDES="$INCLUDES $PAPIINC"            INCLUDES="$INCLUDES $PAPIINC"
1762            LIBS="$LIBS $PAPILIB"            LIBS="$LIBS $PAPILIB"
# Line 1655  if test ! "x$PCL" = x ; then Line 1768  if test ! "x$PCL" = x ; then
1768            echo "  Sticking with PCL flop summary per timestep!"            echo "  Sticking with PCL flop summary per timestep!"
1769        else        else
1770            echo "  Turning on performance analysis with PCL"            echo "  Turning on performance analysis with PCL"
1771            echo "  Please make sure PCLINC, PCLLIB are defined"            echo "  Please make sure PCLINC, PCLLIB are defined"
1772            DEFINES="$DEFINES -DUSE_PCL"            DEFINES="$DEFINES -DUSE_PCL"
1773            INCLUDES="$INCLUDES $PCLINC"            INCLUDES="$INCLUDES $PCLINC"
1774            LIBS="$LIBS $PCLLIB"            LIBS="$LIBS $PCLLIB"
# Line 1665  if test ! "x$HPMT" = x ; then Line 1778  if test ! "x$HPMT" = x ; then
1778        if test ! "x$PAPI" = x ; then        if test ! "x$PAPI" = x ; then
1779            echo "  PAPI and the HPM Toolkit cannot co-exist!"            echo "  PAPI and the HPM Toolkit cannot co-exist!"
1780            echo "  Sticking with PAPI!"            echo "  Sticking with PAPI!"
1781        else if test ! "x$PCL" = x ; then        else
1782            if test ! "x$PCL" = x ; then
1783            echo "  PCL and the HPM Toolkit cannot co-exist!"            echo "  PCL and the HPM Toolkit cannot co-exist!"
1784            echo "  Sticking with PCL!"            echo "  Sticking with PCL!"
1785        else          else
1786            echo "  Turning on performance analysis with the HPM Toolkit"            echo "  Turning on performance analysis with the HPM Toolkit"
1787            echo "  Please make sure HPMTINC, HPMTLIB are defined"            echo "  Please make sure HPMTINC, HPMTLIB are defined"
1788            DEFINES="$DEFINES -DUSE_LIBHPM"            DEFINES="$DEFINES -DUSE_LIBHPM"
1789            INCLUDES="$INCLUDES $HPMTINC"            INCLUDES="$INCLUDES $HPMTINC"
1790            LIBS="$LIBS $HPMTLIB"            LIBS="$LIBS $HPMTLIB"
1791        fi          fi
1792        fi        fi
1793  fi  fi
1794  if test ! "x$GSL" = x ; then  if test ! "x$GSL" = x ; then
# Line 1755  rm -f genmake_tcomp* Line 1869  rm -f genmake_tcomp*
1869  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1870  check_HAVE_CLOC  check_HAVE_CLOC
1871  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1872        DEFINES="$DEFINES -DHAVE_CLOC"
1873      echo "yes"      echo "yes"
1874  else  else
1875      echo "no"      echo "no"
# Line 1769  rm -f genmake_t* Line 1884  rm -f genmake_t*
1884  printf "  Can we unlimit the stack size using $FC...  "  printf "  Can we unlimit the stack size using $FC...  "
1885  check_HAVE_SETRLSTK  check_HAVE_SETRLSTK
1886  if test "x$HAVE_SETRLSTK" = xt ; then  if test "x$HAVE_SETRLSTK" = xt ; then
1887        DEFINES="$DEFINES -DHAVE_SETRLSTK"
1888      echo "yes"      echo "yes"
1889  else  else
1890      echo "no"      echo "no"
# Line 1778  rm -f genmake_t* Line 1894  rm -f genmake_t*
1894  printf "  Can we register a signal handler using $FC...  "  printf "  Can we register a signal handler using $FC...  "
1895  check_HAVE_SIGREG  check_HAVE_SIGREG
1896  if test "x$HAVE_SIGREG" = xt ; then  if test "x$HAVE_SIGREG" = xt ; then
1897        DEFINES="$DEFINES -DHAVE_SIGREG"
1898      echo "yes"      echo "yes"
1899  else  else
1900      echo "no"      echo "no"
# Line 1787  rm -f genmake_t* Line 1904  rm -f genmake_t*
1904  printf "  Can we use stat() through C calls...  "  printf "  Can we use stat() through C calls...  "
1905  check_HAVE_STAT  check_HAVE_STAT
1906  if test "x$HAVE_STAT" != x ; then  if test "x$HAVE_STAT" != x ; then
1907        DEFINES="$DEFINES -DHAVE_STAT"
1908      echo "yes"      echo "yes"
1909  else  else
1910      echo "no"      echo "no"
# Line 1796  rm -f genmake_t* Line 1914  rm -f genmake_t*
1914  printf "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
1915  check_netcdf_libs  check_netcdf_libs
1916  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
1917        DEFINES="$DEFINES -DHAVE_NETCDF"
1918        echo "yes"
1919    else
1920        echo "no"
1921    fi
1922    
1923    printf "  Can we create LAPACK-enabled binaries...  "
1924    check_lapack_libs
1925    if test "x$HAVE_LAPACK" != x ; then
1926        DEFINES="$DEFINES -DHAVE_LAPACK"
1927        echo "yes"
1928    else
1929        echo "no"
1930    fi
1931    
1932    printf "  Can we call FLUSH intrinsic subroutine...  "
1933    check_HAVE_FLUSH
1934    if test "x$HAVE_FLUSH" = xt ; then
1935        DEFINES="$DEFINES -DHAVE_FLUSH"
1936      echo "yes"      echo "yes"
1937  else  else
1938      echo "no"      echo "no"
1939  fi  fi
 DEFINES="$DEFINES $IGNORE_TIME"  
1940    
1941    DEFINES="$DEFINES $IGNORE_TIME"
1942  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
1943      build_embed_encode      build_embed_encode
1944  fi  fi
1945  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
1946      ENABLE="$ENABLE embed_files"      ENABLE="$ENABLE embed_files"
1947    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
1948  fi  fi
1949    
1950  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
# Line 1984  else Line 2122  else
2122          exit 1          exit 1
2123      else      else
2124          echo "    using PKG_LIST=\"$PKG_LIST\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2125          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2126          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2127          RETVAL=$?          RETVAL=$?
2128          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
# Line 2034  for i in $PACKAGES ; do Line 2172  for i in $PACKAGES ; do
2172      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2173      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2174          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2175          exit 1          exit 1
2176      fi      fi
2177      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2178  done  done
# Line 2079  else Line 2217  else
2217          echo "Error: problem encountered while building source files in pkg/mnc:"          echo "Error: problem encountered while building source files in pkg/mnc:"
2218          cat make_mnc.errors 1>&2          cat make_mnc.errors 1>&2
2219          if test "x$mnc_in" = x0 ; then          if test "x$mnc_in" = x0 ; then
2220              exit 1              exit 1
2221          else          else
2222              DISABLE="$DISABLE mnc"              DISABLE="$DISABLE mnc"
2223          fi          fi
# Line 2112  EOF Line 2250  EOF
2250      fi      fi
2251  fi  fi
2252    
2253    #  Check for package RADTRANS: if LAPACK is not available,
2254    #  then issue a warning that the direct radtrans solver is not available.
2255    if test "x$HAVE_LAPACK" != xt ; then
2256        echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1
2257        RETVAL=$?
2258        if test "x$RETVAL" = x0 ; then
2259            cat <<EOF
2260    *********************************************************************
2261    WARNING: the "radtrans" package was enabled but tests failed to
2262      compile LAPACK applications.  This means that the direct radtrans
2263      solver is not available and compilation will fail if it is enabled.
2264      If you want to use the direct solver, please check that:
2265    
2266      1) LAPACK is correctly installed for this compiler and
2267      2) the LIBS variable (within the "optfile") specifies the correct
2268         LAPACK library to link against.
2269    *********************************************************************
2270    EOF
2271        fi
2272    fi
2273    
2274  if  test "x${PKG_DEPEND}" != x ; then  if  test "x${PKG_DEPEND}" != x ; then
2275    echo "  applying package dependency rules"    echo "  applying package dependency rules"
2276    ck=    ck=
# Line 2157  if  test "x${PKG_DEPEND}" != x ; then Line 2316  if  test "x${PKG_DEPEND}" != x ; then
2316    
2317          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2318          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2319              #echo "   " $pname ": need to add :" $dname              #echo "   " $pname ": need to add :" $dname
2320              in_dis="f"              in_dis="f"
2321              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2322                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 2182  if  test "x${PKG_DEPEND}" != x ; then Line 2341  if  test "x${PKG_DEPEND}" != x ; then
2341              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2342              exit 1              exit 1
2343          fi          fi
2344          i=`echo "$i + 1" | bc -l`          i=`echo "$i + 1" | bc -l`
2345          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2346      done      done
2347      ck=$ck"t"      ck=$ck"t"
# Line 2223  for n in $names ; do Line 2382  for n in $names ; do
2382          done          done
2383          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2384              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2385              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2386          fi          fi
2387      fi      fi
2388  done  done
# Line 2236  for i in $PACKAGES ; do Line 2395  for i in $PACKAGES ; do
2395  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2396      case $i in      case $i in
2397          aim_v23)          aim_v23)
2398              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2399              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
2400              ;;              ;;
2401      esac      esac
# Line 2278  for i in $spaths ; do Line 2437  for i in $spaths ; do
2437      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2438          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2439          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2440          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2441          for n in $names ; do          for n in $names ; do
2442              test_for_package_in_cpp_options $CPP_OPTIONS $n              test_for_package_in_cpp_options $CPP_OPTIONS $n
2443          done          done
2444      fi      fi
2445      try="$i/CPP_EEOPTIONS.h"      try="$i/CPP_EEOPTIONS.h"
2446      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2447          echo "    found CPP_EEOPTIONS=\"$try\""          echo "    found CPP_EEOPTIONS=\"$try\""
2448          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2449  #**** not yet enabled ****  #**** not yet enabled ****
2450  #        test_for_mpi_in_cpp_eeoptions $try  #        test_for_mpi_in_cpp_eeoptions $try
2451  #**** not yet enabled ****  #**** not yet enabled ****
# Line 2377  if test "x$OPENAD" != x ; then Line 2536  if test "x$OPENAD" != x ; then
2536      OAD_DONT_TRANSFORM="/dev/null"      OAD_DONT_TRANSFORM="/dev/null"
2537      OAD_KEEP_ORIGINAL="/dev/null"      OAD_KEEP_ORIGINAL="/dev/null"
2538      OAD_CB2M_FILES="/dev/null"      OAD_CB2M_FILES="/dev/null"
2539        OADTOOLS="$TOOLSDIR/OAD_support"
2540        test -f "oadtempflile"  &&  \rm -f "oadtempflile"
2541    cat >> "oadtempflile" <<EOF
2542    $OADTOOLS
2543    EOF
2544      echo "  looking for dontCompile file:  "      echo "  looking for dontCompile file:  "
2545      for i in "." $MODS ; do      for i in "." $MODS ; do
2546          if test -r $i"/dontCompile" ; then          if test -r $i"/dontCompile" ; then
# Line 2432  for d in $alldirs ; do Line 2596  for d in $alldirs ; do
2596          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2597              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2598                  ignore_f=f                  ignore_f=f
2599                  case $d/$sf in                  case $d/$sf in
2600                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2601                          ignore_f=t                          ignore_f=t
2602                          ;;                          ;;
2603                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2604                          ignore_f=t                          ignore_f=t
2605                          ;;                          ;;
2606                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2607                          ignore_f=t                          ignore_f=t
2608                          ;;                          ;;
2609                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2610                          ignore_f=t                          ignore_f=t
2611                          ;;                          ;;
2612                    ./EMBEDDED_FILES.h)                    ./EMBEDDED_FILES.h)
2613                          ignore_f=t                          ignore_f=t
2614                          ;;                          ;;
2615                    *)                    *)
2616                          #  For the local directory *ONLY*,                          #  For the local directory *ONLY*,
2617                          #  ignore all soft-links                          #  ignore all soft-links
2618                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
# Line 2458  for d in $alldirs ; do Line 2622  for d in $alldirs ; do
2622                              deplist="$deplist $sf"                              deplist="$deplist $sf"
2623                          fi                          fi
2624                          ;;                          ;;
2625                  esac                  esac
2626                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2627                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2628                      case $extn in                      case $extn in
# Line 2505  for d in $alldirs ; do Line 2669  for d in $alldirs ; do
2669                          echo    " \\"  >> hsrclist.tmp                          echo    " \\"  >> hsrclist.tmp
2670                          printf " $sf" >> hsrclist.tmp                          printf " $sf" >> hsrclist.tmp
2671                          ;;                          ;;
2672                      flow)                      flow)
2673                          echo    " \\"  >> ad_flow_files.tmp                          echo    " \\"  >> ad_flow_files.tmp
2674                          printf " $sf" >> ad_flow_files.tmp                          printf " $sf" >> ad_flow_files.tmp
2675                          ;;                          ;;
# Line 2516  for d in $alldirs ; do Line 2680  for d in $alldirs ; do
2680      done      done
2681      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2682        if test "$d" != "." ; then        if test "$d" != "." ; then
2683          echo "" >> srclinks.tmp          echo "" >> srclinks.tmp
2684          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2685          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2686  # We need to make sure that the link isn't already there.  # We need to make sure that the link isn't already there.
# Line 2537  echo "" >> ad_flow_files.tmp Line 2701  echo "" >> ad_flow_files.tmp
2701  CMDLINE=$0  CMDLINE=$0
2702  for xx in "$@" ; do nw=`echo $xx | wc -w`  for xx in "$@" ; do nw=`echo $xx | wc -w`
2703      if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"      if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2704                          else CMDLINE="$CMDLINE '$xx'" ; fi                          else CMDLINE="$CMDLINE '$xx'" ; fi
2705  done  done
2706    
2707  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
# Line 2571  cat >>$MAKEFILE <<EOF Line 2735  cat >>$MAKEFILE <<EOF
2735  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2736  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2737  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2738  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2739  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2740  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 2586  INCLUDEDIRS = ${INCLUDEDIRS} Line 2748  INCLUDEDIRS = ${INCLUDEDIRS}
2748  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2749  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2750  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2751    OADTOOLS    = ${OADTOOLS}
2752    
2753  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2754  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 2606  else Line 2769  else
2769      echo "EMBEDDED_FILES = " >>$MAKEFILE      echo "EMBEDDED_FILES = " >>$MAKEFILE
2770  fi  fi
2771    
2772    # extract default cpp search path so we can pass it to makedepend
2773    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2774    
2775  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2776  # Unix ln (link)  # Unix ln (link)
2777  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2778  # Dependency generator  # Dependency generator
2779  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2780  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 2628  LINK = ${LINK} ${LDADD} Line 2792  LINK = ${LINK} ${LDADD}
2792  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2793  # Includes for CPP  # Includes for CPP
2794  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2795    # default CPP includes for makedepend
2796    CPPINCLUDES = ${CPPINCLUDES}
2797  # Flags for KPP  # Flags for KPP
2798  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2799  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
# Line 2645  NOOPTFILES = ${NOOPTFILES} Line 2811  NOOPTFILES = ${NOOPTFILES}
2811  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2812  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2813  LIBS = ${LIBS}  LIBS = ${LIBS}
2814  # Name of the Mekfile  # Name of the makefile
2815  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2816    # Name of the make program
2817    MAKE = ${MAKE}
2818    
2819  EOF  EOF
2820    
# Line 2670  echo >> $MAKEFILE Line 2838  echo >> $MAKEFILE
2838  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2839  echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE  echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2840  echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2841  echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE  echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2842  echo >> $MAKEFILE  echo >> $MAKEFILE
2843  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2844  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2845    
2846  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2847    
2848  all: \$(EXECUTABLE)  all: fwd_exe_target
2849    fwd_exe_target:
2850            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2851            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2852            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2853            @-rm -f ad_config.template
2854            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2855    
2856  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2857          @echo Creating \$@ ...          @echo Creating \$@ ...
2858          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2859    
2860  depend:  depend:
2861          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2862          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2863          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2864          -rm -f makedepend.out          -rm -f makedepend.out
2865    
# Line 2693  libmitgcmuv.a: \$(OBJFILES) Line 2869  libmitgcmuv.a: \$(OBJFILES)
2869          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
2870          ar d   libmitgcmuv.a main.o          ar d   libmitgcmuv.a main.o
2871    
2872    obj: \$(OBJFILES)
2873    
2874  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2875    
2876  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
# Line 2710  clean: Line 2888  clean:
2888    
2889  # remove most of the files that "make" and "make depend" generate  # remove most of the files that "make" and "make depend" generate
2890  Clean:  Clean:
2891          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2892          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2893          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2894          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2895          -rm -f genmake_warnings genmake_errors make.log          -rm -f genmake_warnings genmake_errors make.log
2896    
2897  # remove also the executable, files that "genmake2" generates (except Makefile)  # remove also the executable, files that "genmake2" generates (except Makefile)
2898  #         and output from a run (plus log files from testreport)  #         and output from a run (plus log files from testreport)
2899  CLEAN:  CLEAN:
2900          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2901          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.bak          -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2902          -rm -f $LOGFILE genmake_state genmake_*optfile          -rm -f $LOGFILE genmake_state genmake_*optfile
2903          -rm -f SIZE.h.mpi genmake.tr_log make.tr_log          -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2904          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
# Line 2738  cleanlinks: Line 2916  cleanlinks:
2916  # Special targets (SPECIAL_FILES) which are created by make  # Special targets (SPECIAL_FILES) which are created by make
2917  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2918          @echo Creating \$@ ...          @echo Creating \$@ ...
2919          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2920  AD_CONFIG.h:  AD_CONFIG.h:
2921          @echo Creating \$@ ...          @echo Creating \$@ ...
2922          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
2923  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
2924          @echo Creating \$@ ...          @echo Creating \$@ ...
2925          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
# Line 2781  cat >>$MAKEFILE <<EOF Line 2959  cat >>$MAKEFILE <<EOF
2959  ## This nullifies any default implicit rules concerning these two file types:  ## This nullifies any default implicit rules concerning these two file types:
2960  ## %.o : %.F  ## %.o : %.F
2961    
2962    # C preprocessing and replacing the _d in constants:
2963    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
2964    
2965  .F.$FS:  .F.$FS:
2966          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
2967  .$FS.o:  .$FS.o:
2968          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2969  .F.o:  .F.o:
2970          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2971  .F90.$FS90:  .F90.$FS90:
2972          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
2973  .FF90.f$FS90:  .FF90.f$FS90:
2974          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
2975  .$FS90.o:  .$FS90.o:
2976          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2977  .f$FS90.o:  .f$FS90.o:
# Line 2799  cat >>$MAKEFILE <<EOF Line 2980  cat >>$MAKEFILE <<EOF
2980  .c.o:  .c.o:
2981          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2982  .flow.flowdir:  .flow.flowdir:
2983          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
2984    
2985  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2986  .F.p:  .F.p:
2987          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
2988  .p.$FS:  .p.$FS:
2989          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2990    
# Line 2850  rm -f adSrcFiles.tmp Line 3031  rm -f adSrcFiles.tmp
3031  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3032    
3033  # ... AD ...  # ... AD ...
3034  adall: \$(EXE_AD)  adall: ad_exe_target
3035  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
3036  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
3037    
3038  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)  ad_exe_target:
3039          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @echo Update AD_CONFIG.h and make \$(EXE_AD)
3040            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3041            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3042            @-rm -f ad_config.template
3043            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3044    
3045    ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3046            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3047          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3048          -rm -f ad_config.template          @-rm -f ad_config.template
3049          @make \$(F77_PP_SRC_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3050          @make \$(FLOFILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3051          cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3052    
3053  ad_taf_output.$FS: ad_input_code.$FS  ad_taf_output.$FS: ad_input_code.$FS
3054          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
# Line 2872  adtafonly: Line 3060  adtafonly:
3060          ls -l ad_input_code_ad.$FS          ls -l ad_input_code_ad.$FS
3061          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3062    
3063  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)  \$(EXE_AD): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ad_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3064          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
3065    
3066  ad_tamc_output.$FS: ad_input_code.$FS  ad_tamc_output.$FS: ad_input_code.$FS
# Line 2888  adonlyfwd: Line 3076  adonlyfwd:
3076  adtrick:  adtrick:
3077          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3078    
3079    adobj: ad_taf_output.o \$(OBJFILES)
3080    
3081  # ... FTL ...  # ... FTL ...
3082  ftlall: ftl_taf  ftlall: ftl_exe_target
3083  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
3084  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
3085    
3086  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)  ftl_exe_target:
3087          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3088          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3089          -rm -f ftl_config.template          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3090          @make \$(F77_PP_SRC_FILES)          @-rm -f ad_config.template
3091          @make \$(AD_FLOW_FILES)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3092          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS  
3093    ftl_input_code.$FS: \$(AD_FILES)
3094            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3095            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3096            @-rm -f ad_config.template
3097            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3098            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3099            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3100    
3101  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_taf_output.$FS: ftl_input_code.$FS
3102          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
# Line 2911  ftltafonly: Line 3108  ftltafonly:
3108          ls -l ftl_input_code_ftl.$FS          ls -l ftl_input_code_ftl.$FS
3109          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3110    
3111  ftl_taf: ftl_taf_output.o \$(OBJFILES)  \$(EXE_FTL): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ftl_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3112          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
3113    
3114  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
3115          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
# Line 2941  svd_touch: Line 3138  svd_touch:
3138          touch ad_taf_output.$FS ftl_taf_output.$FS          touch ad_taf_output.$FS ftl_taf_output.$FS
3139          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3140          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3141          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3142          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3143          -rm -f ftl_config.template          @-rm -f ad_config.template
3144    
3145  EOF  EOF
3146    
# Line 3018  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod. Line 3215  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.
3215    
3216  .PHONY: adDepend  .PHONY: adDepend
3217  adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)  adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3218          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3219          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3220          -rm -f makedepend.out          -rm -f makedepend.out
3221    
# Line 3043  f95_test.out: f95_test_mods.f90 f95_test Line 3240  f95_test.out: f95_test_mods.f90 f95_test
3240          f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1          f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3241          f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1          f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3242    
3243  # the file included below is created by the  CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
 # postProcessor and its inclusion sets the  
 # variable POSTPROCESSEDFILES  
 # used below. Because the file is made during  
 # make it won't be read until the second (recursive)  
 # invocation in the rule below  
 -include postProcess.make  
3244    
3245  AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)  AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3246    
3247  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3248    
3249  postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)  \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
 ifeq (\$(MAKELEVEL),0)  
         \$(MAKE) adAll  
 else  
         touch \$@  
 endif  
   
 \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)  
 ifeq (\$(MAKELEVEL),1)  
3250          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
 else  
         touch \$@  
 endif  
3251    
3252  # makefile debug rule  # create sources files modules from header files containing common blocks
3253  openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90  %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3254  .PHONY: openad          \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3255    
3256  # create the module files  # create new header files with USE statements for the new modules made above
3257  %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk  %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3258          ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk          \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3259    
3260  # create the header files  # change the include directives of everybody to refer to  the new header files with the USE statements
3261  %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk  %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3262          ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)          \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
   
 # change everybody else to use the new module files:  
 %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash  
         ../OAD_support/cb2mUseModules.bash $< ${MPI}  
3263    
3264  # makefile debug rule  # makefile debug rule
3265  small_f: \$(CB2M_F90_PP_SRC_FILES)  small_f: \$(CB2M_F90_PP_SRC_FILES)
# Line 3096  ad_output.txt: \$(EXE_AD) Line 3272  ad_output.txt: \$(EXE_AD)
3272          @printf 'running ... '          @printf 'running ... '
3273          @./\$(EXE_AD) > \$@          @./\$(EXE_AD) > \$@
3274    
 CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)  
3275  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3276          cat \$^ > \$@          cat \$^ > \$@
3277    
 # strip all comments and blanks to reduce  
 # the file size in order to reduce perl's memory requirements  
 ad_input_code_sf.f$FS90 : ad_input_code.f$FS90  
         cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@  
   
 # mfef90 preprocessing  
 # expand statement functions  
 # expose mfef90 specific substring handling  
 # add the w2f__types module  
 ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90  
         ./mfef90 -r8 -z -F -N132 \$<  
         mv \$<.B \$(basename \$<).B  
         ./whirl2f -openad \$(basename \$<).B  
         cat w2f__types.f90 \$(basename \$<).w2f.f > \$@  
   
3278  # canonicalizer  # canonicalizer
3279  ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py  ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3280          ./preProcess.py --timing --r8 -H -S \$< -o \$@          \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3281    
3282    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3283    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3284            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3285    
3286  # F -> WHIRL  # F -> WHIRL
3287  # note that the canonicalized version cuts off at col 72  ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3288  # doing this also for string constants which is ok as long          \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
 # as we are in fixed mode and cut of exactly there.  
 # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)  
 # characters respectively.  
 ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90  
         ./mfef90 -r8 -z -F \$<  
         mv \$<.B \$@  
3289    
3290  # WHIRL -> XAIF  # WHIRL -> XAIF
3291  ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif  ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3292          ./whirl2xaif -s -n --debug 1 -o \$@ \$<          \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3293    
3294  # XAIF -> XAIF'  # XAIF -> XAIF'
3295  ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver  ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3296          ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r          \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3297    
3298  # XAIF' -> WHIRL'  # XAIF' -> WHIRL'
3299  ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl  ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3300          ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<          \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3301    
3302  # WHIRL' -> F'  # WHIRL' -> F'
3303  ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be  ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3304          ./whirl2f -FLIST:ftn_file=\$@ -openad \$<          \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3305    
3306  # insert template directives  # insert template directives
3307  ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash  ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3308          ../OAD_support/insertTemplateDir.bash \$< \$@          \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3309    
3310  PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F  PPEXTRAS=\$(wildcard \${OADTOOLS}/ad_template.*.F) \${OADTOOLS}/ad_inline.F
3311  # postprocess F'  # postprocess F'
3312  postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)  postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3313          # the target is a placeholder to signal execution of the rule          \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i \${OADTOOLS}/ad_inline.f \$<
3314            # the target is a placeholder to trigger a single execution of the rule
3315          touch \$@          touch \$@
3316          # this step also creates the file postProcess.make but we cannot  # put this so make knows about the postprocessing output
3317          # name it as the target or else make will try to remake it for  OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
         # the include directive above for any rule, e.g. make clean  
         ./postProcess.py --progress --timing --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<  
3318    
3319  # setup some links  # link the XAIF schema files
3320  %.xsd:  %.xsd:
3321          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3322    
 mfef90:  
         \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .  
   
3323  # link the support files:  # link the support files:
3324  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3325          \$(LN) ../OAD_support/\$@ .          \$(LN) \${OADTOOLS}/\$@ .
   
 whirl2xaif xaif2whirl:  
         \$(LN) \${OPENADFORTTK}/bin/\$@ .  
   
 preProcess.py postProcess.py:  
         \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .  
   
 whirl2f whirl2f_be:  
         \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .  
   
 oadDriver:  
         \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@  
3326    
3327  AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)  AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag \$(PPEXTRAS:.F=.f)
3328    
3329  # ============ end OpenAD specific section ==============  # ============ end OpenAD specific section ==============
3330    
# Line 3227  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3369  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3369  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3370    
3371  # Create special header files  # Create special header files
3372  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3373  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3374      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3375  else  else
# Line 3241  else Line 3383  else
3383      fi      fi
3384  fi  fi
3385  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3386      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3387  fi  fi
3388    
3389  #  Write the "state" for future records  #  Write the "state" for future records
# Line 3250  if test "x$DUMPSTATE" = xt ; then Line 3392  if test "x$DUMPSTATE" = xt ; then
3392      for i in $gm_state ; do      for i in $gm_state ; do
3393          t1="t2=\$$i"          t1="t2=\$$i"
3394          eval $t1          eval $t1
3395          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3396      done      done
3397  fi  fi

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