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revision 1.198 by mlosch, Fri Oct 9 11:13:27 2009 UTC revision 1.221 by jmc, Fri Jun 24 22:03:39 2011 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
173  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
# Line 56  test_for_string_in_file() { Line 217  test_for_string_in_file() {
217  # the package list.  # the package list.
218  expand_pkg_groups() {  expand_pkg_groups() {
219      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
220      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
221          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
222          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
# Line 67  expand_pkg_groups() { Line 227  expand_pkg_groups() {
227              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
228                  matched=1                  matched=1
229                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
230                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
231                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
232              else              else
233                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
# Line 110  EOF Line 270  EOF
270              check_for_broken_Ff              check_for_broken_Ff
271          else          else
272              cat <<EOF 2>&1              cat <<EOF 2>&1
273  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
274    (fails the "cp" test) and this program cannot find a suitable    (fails the "cp" test) and this program cannot find a suitable
275    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
276    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
277    
278  EOF  EOF
# Line 146  EOF Line 306  EOF
306              check_for_broken_Ff              check_for_broken_Ff
307          else          else
308              cat <<EOF 2>&1              cat <<EOF 2>&1
309  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
310    (fails the "make/ln" test) and this program cannot find a suitable    (fails the "make/ln" test) and this program cannot find a suitable
311    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
312    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
313    
314  EOF  EOF
# Line 165  EOF Line 325  EOF
325      return      return
326  }  }
327    
   
328  look_for_makedepend()  {  look_for_makedepend()  {
329    
330      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
# Line 186  look_for_makedepend()  { Line 345  look_for_makedepend()  {
345      #    3) locally build and use the cyrus implementation      #    3) locally build and use the cyrus implementation
346      #    4) fall back to the buggy local xmakedpend script      #    4) fall back to the buggy local xmakedpend script
347      #      #
348        echo >> $LOGFILE
349        echo "running: look_for_makedepend()" >> $LOGFILE
350        if test "x${MAKEDEPEND}" != x ; then
351            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
352            RETVAL=$?
353            if test x"$RETVAL" = x0 ; then
354                build_cyrus_makedepend
355                RETVAL=$?
356                if test "x$RETVAL" != x0 ; then
357                    echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'"
358                    MAKEDEPEND=
359                fi
360            else
361                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
362                RETVAL=$?
363                if test "x$RETVAL" = x0 ; then
364                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
365                fi
366                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
367            fi
368        fi
369      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
370          which makedepend > /dev/null 2>&1          which makedepend > /dev/null 2>&1
371          RV0=$?          RV0=$?
# Line 194  look_for_makedepend()  { Line 374  look_for_makedepend()  {
374          cat <<EOF >> $MAKEFILE          cat <<EOF >> $MAKEFILE
375  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
376  #  #
377  #   Some "makedepend" implementations will die if they cannot  #   Some "makedepend" implementations will die if they cannot
378  #   find a Makefile -- so this file is here to gives them an  #   find a Makefile -- so this file is here to gives them an
379  #   empty one to find and parse.  #   empty one to find and parse.
380  EOF  EOF
381          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
# Line 210  EOF Line 390  EOF
390          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
391          if test "x${RV0}${RV1}" = x00 ; then          if test "x${RV0}${RV1}" = x00 ; then
392              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
393                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
394          else          else
395              echo "    a system-default makedepend was not found."              echo "    system-default makedepend not found. Try to build cyrus-makedepend"
               
396              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
397              build_cyrus_makedepend              build_cyrus_makedepend
398              RETVAL=$?              RETVAL=$?
399              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" != x0 ; then
400                    echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend"
401                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
402                    echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
403              fi              fi
             rm -f ./genmake_cy_md  
         fi  
     else  
         #  echo "MAKEDEPEND=${MAKEDEPEND}"  
         echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1  
         RETVAL=$?  
         if test x"$RETVAL" = x0 ; then  
             build_cyrus_makedepend  
404          fi          fi
405      fi      fi
406  }  }
407    
   
408  build_cyrus_makedepend()  {  build_cyrus_makedepend()  {
409        echo >> $LOGFILE
410        echo "running: build_cyrus_makedepend()" >> $LOGFILE
411      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
412      (      (
413          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
# Line 249  build_cyrus_makedepend()  { Line 424  build_cyrus_makedepend()  {
424      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
425      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
426          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
427            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
428          return 0          return 0
429      else      else
430          echo "WARNING: unable to build cyrus-imapd-makedepend"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
431          return 1          return 1
432      fi      fi
433  }  }
434    
   
435  build_embed_encode()  build_embed_encode()
436  {  {
437      printf "  building the embed-encode utility...  "      printf "  building the embed-encode utility...  "
# Line 269  build_embed_encode() Line 444  build_embed_encode()
444              return 1              return 1
445          fi          fi
446          clist="cc gcc c89 $CC"          clist="cc gcc c89 $CC"
447          for ic in $clist ; do          for ic in $clist ; do
448              comm="$ic -o encode_files encode_files.c"              comm="$ic -o encode_files encode_files.c"
449              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
450              RETVAL=$?              RETVAL=$?
# Line 290  build_embed_encode() Line 465  build_embed_encode()
465      DEFINES="$DEFINES -DHAVE_EMBED_SRC"      DEFINES="$DEFINES -DHAVE_EMBED_SRC"
466  }  }
467    
468    #  look for possible C compilers
469  # Guess possible config options for this host  look_for_C_compilers() {
470  find_possible_configs()  {      echo >> $LOGFILE
471        echo "running: look_for_C_compilers()" >> $LOGFILE
472      tmp1=`uname`"_"`uname -m`      rm -f ./genmake_hello.c  ./genmake_hello
473      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat >> genmake_hello.c << EOF
     tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`  
     tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`  
     tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`  
     tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`  
     PLATFORM=$tmp3  
     echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32  
     OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`  
     echo "  The platform appears to be:  $PLATFORM"  
       
     echo "test" > test  
     ln -s ./test link  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         LN="ln -s"  
     else  
         echo "Error: \"ln -s\" does not appear to work on this system!"  
         echo "  For help, please contact <MITgcm-support@mitgcm.org>."  
         exit 1  
     fi  
     rm -f test link  
   
     if test "x$CPP" = x ; then  
         CPP="cpp -traditional -P"  
     fi  
   
     look_for_makedepend  
   
     #================================================================  
     #  look for possible C compilers  
     tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"  
     p_CC=  
     for c in $tmp ; do  
         rm -f ./genmake_hello.c  ./genmake_hello  
         cat >> genmake_hello.c << EOF  
474  #include <stdio.h>  #include <stdio.h>
475  int main(int argc, char **argv) {  int main(int argc, char **argv) {
476    printf("Hello!\n");    printf("Hello!\n");
477    return 0;    return 0;
478  }  }
479  EOF  EOF
480          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
481        p_CC=
482        for c in $tmp ; do
483            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
484            echo $COMM >> $LOGFILE
485            $COMM >> $LOGFILE 2>&1
486          RETVAL=$?          RETVAL=$?
487          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
488                echo " $c test successful" >> $LOGFILE
489              p_CC="$p_CC $c"              p_CC="$p_CC $c"
490          fi          fi
491      done      done
# Line 354  Error: No C compilers were found in your Line 501  Error: No C compilers were found in your
501  EOF  EOF
502          exit 1          exit 1
503      else      else
504          echo "  The possible C compilers found in your path are:"          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
         echo "   "$p_CC  
505          if test "x$CC" = x ; then          if test "x$CC" = x ; then
506              CC=`echo $p_CC | $AWK '{print $1}'`              CC=`echo $p_CC | $AWK '{print $1}'`
507              echo "  Setting C compiler to: "$CC              echo "  Setting C compiler to: "$CC
508          fi          fi
509      fi      fi
510        echo " --> set CC='$CC'" >> $LOGFILE
511    }
512    
513    # Guess possible config options for this host
514    find_possible_optfile()  {
515    
516        echo >> $LOGFILE
517        echo "running: find_possible_optfile()" >> $LOGFILE
518        tmp1=`uname`"_"`uname -m`
519        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
520        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
521        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
522        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
523        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
524        PLATFORM=$tmp3
525        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
526        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
527        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
528    
529      #================================================================      #================================================================
530      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
531      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"      echo "  look for possible FORTRAN compilers" >> $LOGFILE
532        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
533      p_FC=      p_FC=
534      for c in $tmp ; do      rm -f ./genmake_hello.f
535          rm -f ./hello.f ./hello      cat >> genmake_hello.f <<EOF
         cat >> hello.f <<EOF  
536        program hello        program hello
537        do i=1,3        do i=1,3
538          print *, 'hello world : ', i          print *, 'hello world : ', i
539        enddo        enddo
540        end        end
541  EOF  EOF
542          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
543            COMM="$f -o genmake_hello genmake_hello.f"
544            echo $COMM >> $LOGFILE
545            $COMM >> $LOGFILE 2>&1
546          RETVAL=$?          RETVAL=$?
547          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
548              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
549                p_FC="$p_FC $f"
550          fi          fi
551      done      done
552      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
553      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
554          cat 1>&2 <<EOF          cat 1>&2 <<EOF
555    
# Line 394  Error: No Fortran compilers were found i Line 562  Error: No Fortran compilers were found i
562  EOF  EOF
563          exit 1          exit 1
564      else      else
565          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
566      fi      fi
567    
568      #  Use the first of the compilers found in the current PATH      #  Use the first of the compilers found in the current PATH
# Line 404  EOF Line 571  EOF
571          for i in $p_FC ; do          for i in $p_FC ; do
572              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
573              if test -r $OPTFILE ; then              if test -r $OPTFILE ; then
574                  echo "  Setting OPTFILE to: "$OPTFILE                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
575                  break                  break
576              fi              fi
577          done          done
# Line 416  EOF Line 583  EOF
583               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
584          fi          fi
585      fi      fi
586  #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #   for i in $p_FC ; do  
 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
 #if test -r $p_OF ; then  
 #    OPTFILE=$p_OF  
 #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #    break  
 #fi  
 #   done  
587      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
588          cat 1>&2 <<EOF          cat 1>&2 <<EOF
589    
# Line 442  Error: No options file was found in:  $R Line 599  Error: No options file was found in:  $R
599  EOF  EOF
600          exit 1          exit 1
601      fi      fi
602        
603  #     # look for possible MPI libraries  #     # look for possible MPI libraries
604  #     mpi_libs=  #     mpi_libs=
605  #     mpi_fort=`which mpif77 2>/dev/null`  #     mpi_fort=`which mpif77 2>/dev/null`
# Line 461  EOF Line 618  EOF
618  #       if test "x${RETVAL}" = x0 ; then  #       if test "x${RETVAL}" = x0 ; then
619  #           a=`cat out`  #           a=`cat out`
620  #           for i in $a ; do  #           for i in $a ; do
621  #               case $i in  #               case $i in
622  #                   -*)  #                   -*)
623  #                       mpi_libs="$mpi_libs $i" ;;  #                       mpi_libs="$mpi_libs $i" ;;
624  #               esac  #               esac
# Line 471  EOF Line 628  EOF
628  #       fi  #       fi
629  #       rm -f test.f out  #       rm -f test.f out
630  #     fi  #     fi
   
631  }  }
632    
633  #  Parse the package dependency information  #  Parse the package dependency information
# Line 480  get_pdepend_list()  { Line 636  get_pdepend_list()  {
636      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
637      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
638      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
639          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
640          > ./.pd_tmp          > ./.pd_tmp
641        RETVAL=$?
642        if test ! "x${RETVAL}" = x0 ; then
643          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
644          exit 1
645        fi
646      . ./.pd_tmp      . ./.pd_tmp
647      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
     printf "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME  
       -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME  
           Use "NAME" as the adoptfile.  By default, the file at  
           "tools/adjoint_options/adjoint_default" will be used.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -cc NAME | --cc NAME | -cc=NAME | --cc=NAME  
           Use "NAME" as the C compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as gcc, c89, cc, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -ignoretime | -ignore_time | --ignoretime | --ignore_time  
           Ignore all the "wall clock" routines entirely.  This will  
           not in any way hurt the model results -- it simply means  
           that the code that checks how long the model spends in  
           various routines will give junk values.  
   
     -ts | --ts  
           Produce timing information per timestep  
     -papis | --papis  
           Produce summary MFlop/s (and IPC) with PAPI per timestep  
     -pcls | --pcls  
           Produce summary MFlop/s etc. with PCL per timestep  
     -foolad | --foolad  
           Fool the AD code generator  
     -papi | --papi  
           Performance analysis with PAPI  
     -pcl | --pcl  
           Performance analysis with PCL  
     -hpmt | --hpmt  
           Performance analysis with the HPM Toolkit  
   
     -gsl | --gsl  
           Use GSL to control floating point rounding and precision  
     -devel | --devel  
           Add additional warning and debugging flags for development  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from \$PATH/include, link to libraries  
           from \$PATH/lib and use binaries from \$PATH/bin.  
   
     -omp | --omp  
           Activate OpenMP code + use Compiler option OMPFLAG  
     -omp=OMPFLAG | --omp=OMPFLAG  
           Activate OpenMP code + use Compiler option OMPFLAG  
   
     -es | --es | -embed-source | --embed-source  
           Embed a tarball containing the full source code  
           (including the Makefile, etc.) used to build the  
           executable [off by default]  
   
     -bash NAME  
           Explicitly specify the Bourne or BASH shell to use  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/devel_HOWTO/  
   
 EOF  
   
     exit 1  
648  }  }
649    
650  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
# Line 649  get_fortran_c_namemangling()  { Line 654  get_fortran_c_namemangling()  {
654      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
655          return 0          return 0
656      fi      fi
657        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
658    
659      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
660        
661      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
662  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
663  EOF  EOF
664      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
665        echo ' '$COMM >> $LOGFILE
666        $COMM >> $LOGFILE 2>&1
667      RETVAL=$?      RETVAL=$?
668      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
669          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
670          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
671    
672  WARNING: C test compile fails   WARNING: C test compile fails
673  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
674  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
675  EOF  EOF
676          return 1          return 1
677      fi      fi
# Line 671  EOF Line 679  EOF
679      RETVAL=$?      RETVAL=$?
680      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
681          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
682          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
683    
684  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
685  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
686  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
687  EOF  EOF
688          return 1          return 1
689      fi      fi
# Line 685  EOF Line 693  EOF
693        call tsub( string )        call tsub( string )
694        end        end
695  EOF  EOF
696      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
697        echo ' '$COMM >> $LOGFILE
698        $COMM >> $LOGFILE 2>&1
699      RETVAL=$?      RETVAL=$?
700      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
701          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
702          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
703    
704  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
705  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
706  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
707  EOF  EOF
708          return 1          return 1
709      fi      fi
# Line 701  EOF Line 711  EOF
711      RETVAL=$?      RETVAL=$?
712      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
713          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
714          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
715    
716  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
717  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
718  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
719  EOF  EOF
720          return 1          return 1
721      fi      fi
# Line 731  EOF Line 741  EOF
741    
742      #  cleanup the testing files      #  cleanup the testing files
743      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
744    
745        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
746    }
747    
748  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
749        echo >> $LOGFILE
750        echo "running: check_HAVE_CLOC()" >> $LOGFILE
751      get_fortran_c_namemangling      get_fortran_c_namemangling
752      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
753  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 752  void FC_NAMEMANGLE(cloc) ( double *curti Line 765  void FC_NAMEMANGLE(cloc) ( double *curti
765  }  }
766  EOF  EOF
767      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
768      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
769      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
770      RET_C=$?      RET_C=$?
771      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
772        program hello        program hello
# Line 764  EOF Line 777  EOF
777        end        end
778  EOF  EOF
779      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
780      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
781      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
782      RET_F=$?      RET_F=$?
783      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
784      RETVAL=$?      RETVAL=$?
785      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
786          HAVE_CLOC=t          HAVE_CLOC=t
787          DEFINES="$DEFINES -DHAVE_CLOC"          DEFINES="$DEFINES -DHAVE_CLOC"
788      fi      fi
789      rm -f genmake_tc*      rm -f genmake_tc*
790        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
791  }  }
792    
   
793  check_HAVE_SIGREG()  {  check_HAVE_SIGREG()  {
794      if test ! "x$HAVE_SIGREG" = x ; then      if test ! "x$HAVE_SIGREG" = x ; then
795          return          return
796      fi      fi
797        echo >> $LOGFILE
798        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
799      get_fortran_c_namemangling      get_fortran_c_namemangling
800      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
801  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 813  void FC_NAMEMANGLE(sigreg) (int * aip) Line 828  void FC_NAMEMANGLE(sigreg) (int * aip)
828  }  }
829  EOF  EOF
830      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
831      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
832      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
833      RET_C=$?      RET_C=$?
834      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
835        program hello        program hello
# Line 824  EOF Line 839  EOF
839        call sigreg(anint)        call sigreg(anint)
840        end        end
841  EOF  EOF
842      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SIGREG()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
843      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
844      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
845      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
846      RETVAL=$?      RETVAL=$?
847      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
848          HAVE_SIGREG=t          HAVE_SIGREG=t
849          DEFINES="$DEFINES -DHAVE_SIGREG"          DEFINES="$DEFINES -DHAVE_SIGREG"
850      fi      fi
851      rm -f genmake_tc*      rm -f genmake_tc*
852        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
853  }  }
854    
   
855  check_HAVE_SETRLSTK()  {  check_HAVE_SETRLSTK()  {
856      if test "x$HAVE_SETRLSTK" = xt ; then      if test "x$HAVE_SETRLSTK" = xt ; then
857          DEFINES="$DEFINES -DHAVE_SETRLSTK"          DEFINES="$DEFINES -DHAVE_SETRLSTK"
# Line 847  check_HAVE_SETRLSTK()  { Line 860  check_HAVE_SETRLSTK()  {
860      if test ! "x$HAVE_SETRLSTK" = x ; then      if test ! "x$HAVE_SETRLSTK" = x ; then
861          return          return
862      fi      fi
863        echo >> $LOGFILE
864        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
865      get_fortran_c_namemangling      get_fortran_c_namemangling
866      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
867  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 863  void FC_NAMEMANGLE(setrlstk) () Line 878  void FC_NAMEMANGLE(setrlstk) ()
878  }  }
879  EOF  EOF
880      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
881      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
882      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
883      RET_C=$?      RET_C=$?
884      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
885        program hello        program hello
# Line 872  EOF Line 887  EOF
887        call setrlstk()        call setrlstk()
888        end        end
889  EOF  EOF
890      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
891      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
892      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
893      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
894      RETVAL=$?      RETVAL=$?
895      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
896          HAVE_SETRLSTK=t          HAVE_SETRLSTK=t
897          DEFINES="$DEFINES -DHAVE_SETRLSTK"          DEFINES="$DEFINES -DHAVE_SETRLSTK"
898      fi      fi
899      rm -f genmake_tc*      rm -f genmake_tc*
900        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
901  }  }
902    
   
903  check_HAVE_STAT()  {  check_HAVE_STAT()  {
904        echo >> $LOGFILE
905        echo "running: check_HAVE_STAT()" >> $LOGFILE
906      get_fortran_c_namemangling      get_fortran_c_namemangling
907      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
908  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 909  void FC_NAMEMANGLE(tfsize) ( int *nbyte Line 924  void FC_NAMEMANGLE(tfsize) ( int *nbyte
924  }  }
925  EOF  EOF
926      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
927      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
928      $COMM >> genmake_tc.log 2>&1      $COMM >> genmake_tc.log 2>&1
929      RET_C=$?      RET_C=$?
930      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
# Line 919  EOF Line 934  EOF
934        print *," HELLO WORLD", nbyte        print *," HELLO WORLD", nbyte
935        end        end
936  EOF  EOF
937      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_STAT()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
938      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
939      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
940      $COMM >> genmake_tc.log 2>&1      $COMM >> genmake_tc.log 2>&1
941      RETVAL=$?      RETVAL=$?
942      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
# Line 931  EOF Line 944  EOF
944          DEFINES="$DEFINES -DHAVE_STAT"          DEFINES="$DEFINES -DHAVE_STAT"
945      fi      fi
946      rm -f genmake_tc*      rm -f genmake_tc*
947        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
948  }  }
949    
   
950  check_netcdf_libs()  {  check_netcdf_libs()  {
951      if test ! "x$SKIP_NETCDF_CHECK" = x ; then      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
952          return          return
953      fi      fi
954      echo >> genmake_warnings      echo >> $LOGFILE
955      echo "running: check_netcdf_libs()" >> genmake_warnings      echo "running: check_netcdf_libs()" >> $LOGFILE
956      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
957        program fgennc        program fgennc
958  #include "netcdf.inc"  #include "netcdf.inc"
# Line 957  EOF Line 970  EOF
970        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
971        end        end
972  EOF  EOF
973      echo "===  genmake_tnc.F  ===" > genmake_tnc.log      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
974      cat genmake_tnc.F >> genmake_tnc.log      cat genmake_tnc.F >> genmake_tnc.log
975      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log      echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
976      RET_CPP=f      RET_CPP=f
977      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
978      echo "$COMM" >> genmake_tnc.log      echo "$COMM" >> genmake_tnc.log
# Line 975  EOF Line 988  EOF
988      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
989          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
990      RET_COMPILE=$?      RET_COMPILE=$?
991      cat genmake_tnc.log >> genmake_warnings      cat genmake_tnc.log >> $LOGFILE
992    
993      #EH3  Remove test program execution for machines that either disallow      #EH3  Remove test program execution for machines that either disallow
994      #EH3  execution or cannot support it (eg. cross-compilers)      #EH3  execution or cannot support it (eg. cross-compilers)
# Line 986  EOF Line 999  EOF
999    
1000      if test "x$RET_COMPILE" = x0 ; then      if test "x$RET_COMPILE" = x0 ; then
1001          HAVE_NETCDF=t          HAVE_NETCDF=t
1002            echo "check_netcdf: successful" >> $LOGFILE
1003      else      else
1004          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
1005          echo "try again with added '-lnetcdf'" > genmake_tnc.log          echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1006          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1007          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1008          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
# Line 996  EOF Line 1010  EOF
1010              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1011              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1012          RET_COMPILE=$?          RET_COMPILE=$?
1013          cat genmake_tnc.log >> genmake_warnings          echo >> $LOGFILE
1014            cat genmake_tnc.log >> $LOGFILE
1015          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
1016              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
1017              HAVE_NETCDF=t              HAVE_NETCDF=t
1018                echo "check_netcdf: successful" >> $LOGFILE
1019          else          else
1020          # try again with "-lnetcdff" added to the libs          # try again with "-lnetcdff" added to the libs
1021              echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log              echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1022              echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log              echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1023              echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log              echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1024              echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log              echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
# Line 1010  EOF Line 1026  EOF
1026                  &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \                  &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1027                  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1                  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1028              RET_COMPILE=$?              RET_COMPILE=$?
1029              cat genmake_tnc.log >> genmake_warnings              echo >> $LOGFILE
1030                cat genmake_tnc.log >> $LOGFILE
1031              if test "x$RET_COMPILE" = x0 ; then              if test "x$RET_COMPILE" = x0 ; then
1032                  LIBS="$LIBS -lnetcdff -lnetcdf"                  LIBS="$LIBS -lnetcdff -lnetcdf"
1033                  HAVE_NETCDF=t                  HAVE_NETCDF=t
1034                    echo "check_netcdf: successful" >> $LOGFILE
1035              fi              fi
1036          fi          fi
1037      fi      fi
1038      rm -f genmake_tnc*      rm -f genmake_tnc*
1039        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1040  }  }
1041    
1042    
   
1043  ###############################################################################  ###############################################################################
1044  #   Sequential part of script starts here  #   Sequential part of script starts here
1045  ###############################################################################  ###############################################################################
# Line 1043  ENABLE= Line 1061  ENABLE=
1061  DISABLE=  DISABLE=
1062  # MAKEFILE=  # MAKEFILE=
1063  # MAKEDEPEND=  # MAKEDEPEND=
1064  PDEPEND=  PKG_DEPEND=
1065  DUMPSTATE=t  PKG_GROUPS=
1066  PDEFAULT=  DUMPSTATE=f
1067  OPTFILE=  OPTFILE=
1068  INCLUDES="-I. $INCLUDES"  INCLUDES="-I. $INCLUDES"
1069  FFLAGS=  FFLAGS=
# Line 1053  FOPTIM= Line 1071  FOPTIM=
1071  FEXTRAFLAGS=  FEXTRAFLAGS=
1072  USE_EXTENDED_SRC=  USE_EXTENDED_SRC=
1073  EXTENDED_SRC_FLAG=  EXTENDED_SRC_FLAG=
1074    GET_FC_VERSION=
1075  CFLAGS=  CFLAGS=
1076  KFLAGS1=  KFLAGS1=
1077  KFLAGS2=  KFLAGS2=
# Line 1065  MPI= Line 1084  MPI=
1084  MPIPATH=  MPIPATH=
1085  OMP=  OMP=
1086  OMPFLAG=  OMPFLAG=
1087    USE_R4=
1088  TS=  TS=
1089  PAPIS=  PAPIS=
1090  PCLS=  PCLS=
# Line 1129  FTL_TAF_FLAGS= Line 1149  FTL_TAF_FLAGS=
1149  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1150  TAMC_EXTRA=  TAMC_EXTRA=
1151    
   
1152  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1153  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS MAKEFILE MAKEDEPEND PLATFORM ROOTDIR MODS DISABLE ENABLE"
1154  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"  gm_s2="FC CC USE_R4 TS PAPIS PCLS PAPI PCL HPMT IEEE DEVEL GSL MPI OMP DUMPSTATE STANDARDDIRS"
1155    
1156  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1157  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"  gm_s3="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1158  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1159  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD THISHOST THISUSER THISDATE THISVER MACHINE"
1160  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1161  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s7="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME"
1162    
1163  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1164  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 1153  cat <<EOF Line 1172  cat <<EOF
1172    
1173  GENMAKE :  GENMAKE :
1174    
1175  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1176  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1177    or for more detail see the Developer's HOWTO manual at:
1178    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1179    
1180  EOF  EOF
1181    
1182    LOGFILE="genmake.log"
1183    #- clean-up previous genmake logfiles:
1184    rm -f genmake_state genmake_*optfile $LOGFILE
1185    
1186  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1187  gm_local="genmake_local"  gm_local="genmake_local"
1188  printf "  getting local config information:  "  printf "  getting local config information:  "
# Line 1185  for ac_option in "$@" ; do Line 1208  for ac_option in "$@" ; do
1208          ac_prev=          ac_prev=
1209          continue          continue
1210      fi      fi
1211        
1212      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1213        
1214      case $ac_option in      case $ac_option in
1215                    
1216          -help | --help | -h | --h)          -help | --help | -h | --h)
# Line 1206  for ac_option in "$@" ; do Line 1229  for ac_option in "$@" ; do
1229              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1230                    
1231          -pdepend | --pdepend)          -pdepend | --pdepend)
1232              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1233          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1234              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1235                    
1236          -pdefault | --pdefault)          -pgroups | --pgroups)
1237              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1238          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1239              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1240                    
1241          -make | --make | -m | --m)          -make | --make | -m | --m)
1242              ac_prev=MAKE ;;              ac_prev=MAKE ;;
# Line 1292  for ac_option in "$@" ; do Line 1315  for ac_option in "$@" ; do
1315          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1316              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
1317                    
1318            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1319                USE_R4=true ;;
1320    
1321          -ieee | --ieee)          -ieee | --ieee)
1322              IEEE=true ;;              IEEE=true ;;
1323          -noieee | --noieee)          -noieee | --noieee)
1324              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1325            -devel | --devel)
1326                IEEE=true ; DEVEL=true ;;
1327            -gsl | --gsl)
1328                GSL=true ;;
1329    
1330          -ts | --ts)          -ts | --ts)
1331              TS=true ;;              TS=true ;;
# Line 1312  for ac_option in "$@" ; do Line 1342  for ac_option in "$@" ; do
1342          -hpmt | --hpmt)          -hpmt | --hpmt)
1343              HPMT=true ;;              HPMT=true ;;
1344    
         -gsl | --gsl)  
             GSL=true ;;  
   
         -devel | --devel)  
             DEVEL=true ;;  
   
1345          -mpi | --mpi)          -mpi | --mpi)
1346              MPI=true ;;              MPI=true ;;
1347          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
# Line 1360  for ac_option in "$@" ; do Line 1384  for ac_option in "$@" ; do
1384              ;;              ;;
1385                    
1386      esac      esac
       
 done  
1387    
1388    done
1389    
1390  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1391      echo      echo
1392      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1393      echo "  file.  This file format is no longer supported.  For directions on"      echo "  file.  This file format is no longer supported.  For directions on"
1394      echo "  how to setup and use the new \"genmake2\" script, please see:"      echo "  how to setup and use the new \"genmake2\" script, please see:"
1395      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1396      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1397      echo "WARNING: ignore \"./.genmakerc\" and continue."      echo "WARNING: ignore \"./.genmakerc\" and continue."
1398      echo      echo
1399  fi  fi
1400    
1401  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
# Line 1384  if test "x${ROOTDIR}" = x ; then Line 1407  if test "x${ROOTDIR}" = x ; then
1407          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1408              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1409                  ROOTDIR=$d                  ROOTDIR=$d
1410                  printf "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1411                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1412                  break                  break
1413              fi              fi
1414          done          done
# Line 1405  fi Line 1428  fi
1428  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1429  version_file="${ROOTDIR}/doc/tag-index"  version_file="${ROOTDIR}/doc/tag-index"
1430  if test -f $version_file ; then  if test -f $version_file ; then
1431      THISVER=`grep '^checkpoint' $version_file | head -1`      THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1432  #-  remove ./BUILD_INFO.h file if older than version_file  #-  remove ./BUILD_INFO.h file if older than version_file
1433      if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then      if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1434          echo "  remove ./BUILD_INFO.h (older than ${version_file})"          echo "  remove ./BUILD_INFO.h (older than ${version_file})"
# Line 1422  if test "x${OPTFILE}" = x ; then Line 1445  if test "x${OPTFILE}" = x ; then
1445      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1446          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1447          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1448          find_possible_configs          find_possible_optfile
1449      else      else
1450          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1451      fi      fi
# Line 1437  if test "x$OPTFILE" != xNONE ; then Line 1460  if test "x$OPTFILE" != xNONE ; then
1460              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1461              exit 1              exit 1
1462          fi          fi
1463          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1464              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1465          fi          fi
1466      else      else
# Line 1464  if test "x${AD_OPTFILE}" != xNONE ; then Line 1487  if test "x${AD_OPTFILE}" != xNONE ; then
1487              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1488              exit 1              exit 1
1489          fi          fi
1490          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1491              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1492          fi          fi
1493      else      else
# Line 1492  Error: no Fortran compiler: please speci Line 1515  Error: no Fortran compiler: please speci
1515  EOF  EOF
1516      exit 1      exit 1
1517  fi  fi
1518    if test "x$GET_FC_VERSION" != x ; then
1519      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1520      $FC $GET_FC_VERSION >> $LOGFILE 2>&1
1521      echo "<-- compiler version ----" >> $LOGFILE
1522    fi
1523    
1524  if test "x$CC" = x ; then  if test "x$CC" = x ; then
1525      CC=cc      look_for_C_compilers
 #     cat <<EOF 1>&2  
 # Error: no C compiler: please specify using one of the following:  
 #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"  
 #   2) the "-cc=XXX" command-line option  
 #   3) the "./genmake_local" file  
 # EOF  
 #     exit 1  
1526  fi  fi
1527    
1528  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1529      LINK=$FC      LINK=$FC
1530  fi  fi
# Line 1509  if test "x$MAKE" = x ; then Line 1532  if test "x$MAKE" = x ; then
1532      MAKE="make"      MAKE="make"
1533  fi  fi
1534  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1535      CPP=cpp      CPP="cpp -traditional -P"
1536  fi  fi
1537  #EH3 === UGLY ===  #EH3 === UGLY ===
1538  #  The following is an ugly little hack to check for $CPP in /lib/ and  #  The following is an ugly little hack to check for $CPP in /lib/ and
# Line 1536  EOF Line 1559  EOF
1559  else  else
1560      rm -f test_cpp      rm -f test_cpp
1561  fi  fi
1562    
1563  look_for_makedepend  look_for_makedepend
1564    
1565    #  Check that soft-link command is set and usable
1566  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1567      LN="ln -s"      LN="ln -s"
1568  fi  fi
# Line 1546  RETVAL=$? Line 1572  RETVAL=$?
1572  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1573      cat <<EOF 1>&2      cat <<EOF 1>&2
1574    
1575  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1576    command in the optfile.    command in the optfile.
1577    
1578  EOF  EOF
# Line 1573  if test ! "x$OMP" = x ; then Line 1599  if test ! "x$OMP" = x ; then
1599        DEFINES="$DEFINES -DUSE_OMP_THREADING"        DEFINES="$DEFINES -DUSE_OMP_THREADING"
1600  fi  fi
1601    
1602    if test ! "x$USE_R4" = x ; then
1603          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1604          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1605    fi
1606    
1607  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1608        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
1609        if test ! "x$FOOLAD" = x ; then        if test ! "x$FOOLAD" = x ; then
# Line 1778  if test "x$EMBED_SRC" = xt ; then Line 1809  if test "x$EMBED_SRC" = xt ; then
1809      ENABLE="$ENABLE embed_files"      ENABLE="$ENABLE embed_files"
1810  fi  fi
1811    
   
1812  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1813  printf "  Adding MODS directories: "  printf "  Adding MODS directories: "
1814  for d in $MODS ; do  for d in $MODS ; do
# Line 1794  for d in $MODS ; do Line 1824  for d in $MODS ; do
1824  done  done
1825  echo  echo
1826    
1827  if test "x${PLATFORM}" = x ; then  #if test "x${PLATFORM}" = x ; then
1828      PLATFORM=$p_PLATFORM  #    PLATFORM=$p_PLATFORM
1829  fi  #fi
1830    
1831  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1832      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
# Line 1836  ERROR: neither of the two default script Line 1866  ERROR: neither of the two default script
1866      ${TOOLSDIR}/set64bitConst.sh      ${TOOLSDIR}/set64bitConst.sh
1867      ${TOOLSDIR}/set64bitConst.csh      ${TOOLSDIR}/set64bitConst.csh
1868    
1869    are working so please check paths or specify (with \$S64) a    are working so please check paths or specify (with \$S64) a
1870    working version of this script.    working version of this script.
1871    
1872  EOF  EOF
# Line 1848  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD Line 1878  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD
1878    
1879  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1880    
1881    #  Set Standard Code Directories:
1882    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1883        STANDARDDIRS="eesupp model"
1884    fi
1885    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
1886    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
1887    ckM=$?
1888    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
1889    ckE=$?
1890    if test $ckM = 0 -a $ckE = 1 ; then
1891        STANDARDDIRS="$STANDARDDIRS eesupp"
1892    fi
1893    
1894  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
1895  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
1896  #  they appear as regular source code  #  they appear as regular source code
1897  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1898      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1899      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
1900        ) > make_eesupp.errors 2>&1
1901      RETVAL=$?      RETVAL=$?
1902      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1903          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 1868  fi Line 1912  fi
1912  for pdir in exch2 regrid ; do  for pdir in exch2 regrid ; do
1913      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1914          echo "  Making source files in pkg/${pdir} from templates"          echo "  Making source files in pkg/${pdir} from templates"
1915          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
1916            ) > make_${pdir}.errors 2>&1
1917          RETVAL=$?          RETVAL=$?
1918          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
1919              rm -f make_${pdir}.errors              rm -f make_${pdir}.errors
# Line 1881  for pdir in exch2 regrid ; do Line 1926  for pdir in exch2 regrid ; do
1926  done  done
1927    
1928  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1929  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
1930      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
1931      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
1932          PDEPEND=$tmp  fi
1933      else  if  test "x${PKG_DEPEND}" = x ; then
1934          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
1935          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
1936  else  else
1937      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
1938          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
1939          exit 1          exit 1
1940      fi      fi
1941        echo "  getting package dependency info from  $PKG_DEPEND"
1942    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
1943        get_pdepend_list $PKG_DEPEND
1944  fi  fi
1945  echo "  getting package dependency info from  $PDEPEND"  
1946  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
1947  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
1948  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
1949      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
1950      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
1951  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
1952  if test ! "x${RETVAL}" = x0 ; then  fi
1953      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
1954      exit 1          echo "Warning:  No package groups information was specified."
1955            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
1956    else
1957        if test ! -r ${PKG_GROUPS} ; then
1958            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
1959            exit 1
1960        fi
1961        echo "  getting package groups info from      $PKG_GROUPS"
1962  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
1963    
1964  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
1965  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
1966  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
1967  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
1968      for i in "." $MODS ; do      for i in "." $MODS ; do
1969          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
1970                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
1971                  break                  break
1972          fi          fi
1973      done      done
1974  fi  fi
1975  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
1976      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
1977  fi      if test "x${PKG_GROUPS}" = x ; then
1978  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
1979      echo "    default packages file disabled"          exit 1
1980        fi
1981  else  else
1982      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
1983          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
1984            exit 1
1985      else      else
1986          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
1987          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1988          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1989          RETVAL=$?          RETVAL=$?
1990          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1991              printf "Error: can't parse default package list "              printf "Error: can't parse package list "
1992              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
1993              exit 1              exit 1
1994          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         RET=1  
         while test $RET = 1 ; do expand_pkg_groups; RET=$?; done  
         echo "    after group expansion packages are:  $PACKAGES"  
1995      fi      fi
1996  fi  fi
1997    for i in $pkg_list ; do
1998        PACKAGES="$PACKAGES $i"
1999    done
2000    echo     "    before group expansion packages are:$PACKAGES"
2001    if test "x${PKG_GROUPS}" != x ; then
2002        RET=1
2003        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2004        echo "    after group expansion packages are: $PACKAGES"
2005    fi
2006    
2007  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2008    echo "" > ./.tmp_pack
2009  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2010      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2011  done  done
# Line 1977  PACKAGES="$PACKAGES $ENABLE" Line 2033  PACKAGES="$PACKAGES $ENABLE"
2033  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2034      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2035      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2036          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2037          exit 1          exit 1
2038      fi      fi
2039      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
# Line 1987  for i in `grep -v "-" ./.tmp_pack | sort Line 2043  for i in `grep -v "-" ./.tmp_pack | sort
2043      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2044  done  done
2045  rm -f ./.tmp_pack  rm -f ./.tmp_pack
2046  echo "    packages are:  $PACKAGES"  echo "    packages are: $PACKAGES"
2047    
2048  #  Check for package MNC: if NetCDF is available, then build the MNC  #  Check for package MNC: if NetCDF is available, then build the MNC
2049  #  template files ; otherwise, delete mnc from the list of packages.  #  template files ; otherwise, delete mnc from the list of packages.
2050  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2051  RETVAL=$?  mnc_in=$?
2052  if test "x$RETVAL" = x0 ; then  if test "x$HAVE_NETCDF" != xt ; then
2053      if test "x$HAVE_NETCDF" != xt ; then      if test "x$mnc_in" = x0 ; then
2054          cat <<EOF          cat <<EOF
   
2055  *********************************************************************  *********************************************************************
2056  WARNING: the "mnc" package was enabled but tests failed to compile  WARNING: the "mnc" package was enabled but tests failed to compile
2057    NetCDF applications.  Please check that:    NetCDF applications.  Please check that:
2058    
2059    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2060    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2061         NetCDF library to link against.         NetCDF library to link against.
2062    
2063    Due to this failure, the "mnc" package is now DISABLED.    Due to this failure, the "mnc" package is now DISABLED.
2064  *********************************************************************  *********************************************************************
   
2065  EOF  EOF
2066          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2067          DISABLE="$DISABLE mnc"          DISABLE="$DISABLE mnc"
2068      else      else
2069          ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1      #  this prevent to add mnc (due to pdepend rules) if not available
2070          RETVAL=$?          DISABLE="$DISABLE mnc"
2071          if test "x${RETVAL}" = x0 ; then      fi
2072              rm -f make_mnc.errors  else
2073        # we have NetCDF, we try to build MNC template files
2074        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2075        RETVAL=$?
2076        if test "x${RETVAL}" = x0 ; then
2077            rm -f make_mnc.errors
2078        else
2079            echo "Error: problem encountered while building source files in pkg/mnc:"
2080            cat make_mnc.errors 1>&2
2081            if test "x$mnc_in" = x0 ; then
2082                exit 1
2083          else          else
2084              echo "Error: problem encountered while building source files in pkg/mnc:"              DISABLE="$DISABLE mnc"
             cat make_mnc.errors 1>&2  
             exit 1  
2085          fi          fi
2086      fi      fi
2087  fi  fi
2088    
2089  #  Check for package PROFILES: if NetCDF is not available,  #  Check for package PROFILES: if NetCDF is not available,
2090  #  then delete profiles from the list of available packages.  #  then delete profiles from the list of available packages.
2091  echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1  if test "x$HAVE_NETCDF" != xt ; then
2092  RETVAL=$?      echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2093  if test "x$RETVAL" = x0 ; then      RETVAL=$?
2094      if test "x$HAVE_NETCDF" != xt ; then      if test "x$RETVAL" = x0 ; then
2095          cat <<EOF          cat <<EOF
   
2096  *********************************************************************  *********************************************************************
2097  WARNING: the "profiles" package was enabled but tests failed to  WARNING: the "profiles" package was enabled but tests failed to
2098    compile NetCDF applications.  Please check that:    compile NetCDF applications.  Please check that:
2099    
2100    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2101    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2102         NetCDF library to link against.         NetCDF library to link against.
2103    
2104    Due to this failure, the "profiles" package is now DISABLED.    Due to this failure, the "profiles" package is now DISABLED.
2105  *********************************************************************  *********************************************************************
   
2106  EOF  EOF
2107          PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2108          DISABLE="$DISABLE profiles"          DISABLE="$DISABLE profiles"
2109        else
2110        #  this prevent to add profiles (due to pdepend rules) if not available
2111            DISABLE="$DISABLE profiles"
2112      fi      fi
2113  fi  fi
2114    
2115  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2116  ck=    echo "  applying package dependency rules"
2117  while test "x$ck" != xtt ; do    ck=
2118      while test "x$ck" != xtt ; do
2119      i=0      i=0
2120      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2121      rtot=$nname      rtot=$nname
# Line 2067  while test "x$ck" != xtt ; do Line 2131  while test "x$ck" != xtt ; do
2131                  pin="t"                  pin="t"
2132              fi              fi
2133          done          done
2134            #  or in the current $STANDARDDIRS list?
2135            for p in $STANDARDDIRS ; do
2136                if test "x$p" = "x$pname" ; then pin="t" ; fi
2137            done
2138    
2139          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2140          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 2110  while test "x$ck" != xtt ; do Line 2178  while test "x$ck" != xtt ; do
2178          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2179          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2180              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2181              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2182              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2183              exit 1              exit 1
2184          fi          fi
# Line 2118  while test "x$ck" != xtt ; do Line 2186  while test "x$ck" != xtt ; do
2186          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2187      done      done
2188      ck=$ck"t"      ck=$ck"t"
2189  done    done
2190  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2191    fi
2192  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2193      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2194      if test -d $adr ; then      if test -d $adr ; then
# Line 2136  done Line 2205  done
2205    
2206  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2207  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2208  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2209  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2210  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2211  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2212  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 2165  for i in $PACKAGES ; do Line 2234  for i in $PACKAGES ; do
2234  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2235    
2236  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2237      case $i in      case $i in
2238          aim_v23)          aim_v23)
2239              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2240              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
# Line 2175  for i in $PACKAGES ; do Line 2244  for i in $PACKAGES ; do
2244    
2245  done  done
2246    
2247  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2248  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2249  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2250      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2251          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 2238  if test -f ./adSrcFiles.tmp ; then Line 2304  if test -f ./adSrcFiles.tmp ; then
2304      rm -f ./adSrcFiles.tmp      rm -f ./adSrcFiles.tmp
2305  fi  fi
2306  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2307    touch adSrcFiles.tmp
2308  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2309      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2310      for j in $list_files ; do      for j in $list_files ; do
# Line 2270  if test ! "x$DIVA" = x ; then Line 2337  if test ! "x$DIVA" = x ; then
2337          fi          fi
2338          MPIINCLUDEDIR='$MPIHOME/include'          MPIINCLUDEDIR='$MPIHOME/include'
2339      fi      fi
2340        
2341      if test -r $MPIINCLUDEDIR/mpif.h ; then      if test -r $MPIINCLUDEDIR/mpif.h ; then
2342          for i in $MPI_HEADER_FILES; do          for i in $MPI_HEADER_FILES; do
2343              cp -p $MPIINCLUDEDIR/$i ./mpi_headers              cp -p $MPIINCLUDEDIR/$i ./mpi_headers
# Line 2305  if test ! -r ".links.tmp/foo" ; then Line 2372  if test ! -r ".links.tmp/foo" ; then
2372  fi  fi
2373  rm -f .links.tmp/foo  rm -f .links.tmp/foo
2374    
2375  if test "x$OPENAD" != x ; then  if test "x$OPENAD" != x ; then
2376      OAD_DONT_COMPILE="/dev/null"      OAD_DONT_COMPILE="/dev/null"
2377      OAD_DONT_TRANSFORM="/dev/null"      OAD_DONT_TRANSFORM="/dev/null"
2378      OAD_KEEP_ORIGINAL="/dev/null"      OAD_KEEP_ORIGINAL="/dev/null"
# Line 2358  for d in $alldirs ; do Line 2425  for d in $alldirs ; do
2425      deplist=      deplist=
2426      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2427      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2428      if test "x$OPENAD" != x ; then      if test "x$OPENAD" != x ; then
2429          sfiles=`( echo $sfiles | grep -v _cb2m\. )`          sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2430      fi      fi
2431      for sf in $sfiles ; do      for sf in $sfiles ; do
# Line 2398  for d in $alldirs ; do Line 2465  for d in $alldirs ; do
2465                        F)                        F)
2466                          echo    " \\"  >> F77srclist.tmp                          echo    " \\"  >> F77srclist.tmp
2467                          printf " $sf" >> F77srclist.tmp                          printf " $sf" >> F77srclist.tmp
2468                          if test "x$OPENAD" != x ; then                          if test "x$OPENAD" != x ; then
2469                              basename=${sf%%.F}                              basename=${sf%%.F}
2470                              isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`                              isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2471                              if test -z "$isAD" ; then                              if test -z "$isAD" ; then
2472                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2473                                  if test -z "$toBeIgnored" ; then                                  if test -z "$toBeIgnored" ; then
2474                                      echo    " \\"  >> nonADF77srclist.tmp                                      echo    " \\"  >> nonADF77srclist.tmp
2475                                      printf " $sf" >> nonADF77srclist.tmp                                      printf " $sf" >> nonADF77srclist.tmp
2476                                  else                                  else
2477                                      echo "    not to be compiled   :  $sf"                                      echo "    not to be compiled   :  $sf"
2478                                  fi                                  fi
2479                              else # file is initially listed as an AD file we want to exclude it                              else # file is initially listed as an AD file we want to exclude it
2480                                   # or we want to retain the untransformed version                                   # or we want to retain the untransformed version
2481                                  notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`                                  notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2482                                  untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`                                  untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2483                                  if test -n "$notToBeTransformed"; then                                  if test -n "$notToBeTransformed"; then
2484                                      echo "    not to be transformed:  $sf"                                      echo "    not to be transformed:  $sf"
2485                                  fi                                  fi
2486                                  if test -n "$untransformedVersionToBeKept" ; then                                  if test -n "$untransformedVersionToBeKept" ; then
2487                                      echo "    original to be kept  :  $sf"                                      echo "    original to be kept  :  $sf"
2488                                  fi                                      fi
2489                                  if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then                                  if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2490                                      echo    " \\"  >> nonADF77srclist.tmp                                      echo    " \\"  >> nonADF77srclist.tmp
2491                                      printf " $sf" >> nonADF77srclist.tmp                                      printf " $sf" >> nonADF77srclist.tmp
# Line 2474  for xx in "$@" ; do nw=`echo $xx | wc -w Line 2541  for xx in "$@" ; do nw=`echo $xx | wc -w
2541  done  done
2542    
2543  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2544      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2545  fi  fi
2546  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2547  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 2493  EXE_SVD=$EXECUTABLE"_svd" Line 2560  EXE_SVD=$EXECUTABLE"_svd"
2560  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2561  #  #
2562  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2563  #  #
2564  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2565  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2566  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 2513  cat >>$MAKEFILE <<EOF Line 2580  cat >>$MAKEFILE <<EOF
2580  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2581    
2582  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2583  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2584  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2585  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2586  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
# Line 2594  rm -f F77srclist.tmp nonADF77srclist.tmp Line 2661  rm -f F77srclist.tmp nonADF77srclist.tmp
2661    
2662  echo >> $MAKEFILE  echo >> $MAKEFILE
2663    
2664  # add definitions for preprocessed sources  # add definitions for preprocessed sources
2665  # and note that not all systems allow case sensitive extensions  # and note that not all systems allow case sensitive extensions
2666  # hence the $FS and $FS90 here.  # hence the $FS and $FS90 here.
2667  # for fixed format f90 files we use ff90 or FF90 resp  # for fixed format f90 files we use ff90 or FF90 resp
2668  # but these are not expected to be the original source files  # but these are not expected to be the original source files
2669    
2670  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
# Line 2634  output.txt: \$(EXECUTABLE) Line 2701  output.txt: \$(EXECUTABLE)
2701          @printf 'running ... '          @printf 'running ... '
2702          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2703    
2704    # remove most of the files that "make" generates
2705  clean:  clean:
2706          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2707          -rm -rf *.o          -rm -rf *.o
2708          -rm -rf *.$FS *.flowdir          -rm -rf *.$FS *.flowdir
2709          -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*          -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2710    
2711    # remove most of the files that "make" and "make depend" generate
2712  Clean:  Clean:
2713          @make clean          @make clean
2714          @make cleanlinks          @make cleanlinks
2715          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
         -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log f90mkdepend.log *.bak  
2716          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2717            -rm -f genmake_warnings genmake_errors make.log
2718    
2719    # remove also the executable, files that "genmake2" generates (except Makefile)
2720    #         and output from a run (plus log files from testreport)
2721  CLEAN:  CLEAN:
2722          @make Clean          @make Clean
2723            -rm -f \$(EXECUTABLE) \$(EXE_AD) *.bak
2724            -rm -f $LOGFILE genmake_state genmake_*optfile
2725            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2726          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2727          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2728          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2729          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime          -rm -f *.txt STD* *diagnostics.log datetime
2730          -rm -f *_MIT_CE_000.opt0000 costfunction*0000          -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2731          -rm -rf mnc_test_*          -rm -rf mnc_test_*
2732    
 #eh3 Makefile: makefile  
2733  makefile:  makefile:
2734          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
2735  cleanlinks:  cleanlinks:
# Line 2685  if test "x$EMBED_SRC" = xt ; then Line 2760  if test "x$EMBED_SRC" = xt ; then
2760    
2761  decode_files.o : EMBEDDED_FILES.h  decode_files.o : EMBEDDED_FILES.h
2762    
2763  ##  \$(F77_PP_SRC_FILES)  ##  \$(F77_PP_SRC_FILES)
2764  all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile  all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2765          @echo Creating \$@ ...          @echo Creating \$@ ...
2766          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
# Line 2710  cat >>$MAKEFILE <<EOF Line 2785  cat >>$MAKEFILE <<EOF
2785          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2786  .$FS.o:  .$FS.o:
2787          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2788    .F.o:
2789            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2790  .F90.$FS90:  .F90.$FS90:
2791          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2792  .FF90.f$FS90:  .FF90.f$FS90:
# Line 2736  EOF Line 2813  EOF
2813  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2814  #===  for TAMC/TAF  ======================  #===  for TAMC/TAF  ======================
2815    
2816  if test "x$OPENAD" = x ; then  if test "x$OPENAD" = x ; then
2817    
2818  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2819    
# Line 2796  adtafonly: Line 2873  adtafonly:
2873          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2874    
2875  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2876          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2877    
2878  ad_tamc_output.$FS: ad_input_code.$FS  ad_tamc_output.$FS: ad_input_code.$FS
2879          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2880          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2881    
2882  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2883          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2884    
2885  adonlyfwd:  adonlyfwd:
2886          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2887    
2888  adtrick:  adtrick:
2889          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2890    
# Line 2835  ftltafonly: Line 2912  ftltafonly:
2912          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2913    
2914  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2915          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2916    
2917  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
2918          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2919          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2920    
2921  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2922          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
2923    
2924  # ... SVD ...  # ... SVD ...
2925  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
# Line 2871  svd_touch: Line 2947  svd_touch:
2947    
2948  EOF  EOF
2949    
2950  fi  fi
2951    
2952  #===  for OpenAD  ========================  #===  for OpenAD  ========================
2953    
2954  if test "x$OPENAD" != x ; then  if test "x$OPENAD" != x ; then
2955    
2956  # ============ begin OpenAD specific section ==============  # ============ begin OpenAD specific section ==============
2957    
2958  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2959    
2960  # all the source files linked from the various locations:  # all the source files linked from the various locations:
2961  ALL_LINKED_FILES= \  ALL_LINKED_FILES= \
2962  \$(F77_SRC_FILES) \  \$(F77_SRC_FILES) \
2963  \$(C_SRC_FILES) \  \$(C_SRC_FILES) \
# Line 2933  rm -f adSrcFiles.tmp Line 3009  rm -f adSrcFiles.tmp
3009    
3010  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3011    
3012  adAll: \$(EXE_AD)  adAll: \$(EXE_AD)
3013  .PHONY: adAll  .PHONY: adAll
3014    
3015  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
# Line 2951  w2f__types.F90 \ Line 3027  w2f__types.F90 \
3027  OAD_active.F90 \  OAD_active.F90 \
3028  OAD_cp.F90 \  OAD_cp.F90 \
3029  OAD_rev.F90 \  OAD_rev.F90 \
3030  OAD_tape.F90          OAD_tape.F90
3031    
3032  OPENAD_SUPPORT_C_SRC_FILES = \  OPENAD_SUPPORT_C_SRC_FILES = \
3033  iaddr.c \  iaddr.c \
# Line 2960  timeRatio.c Line 3036  timeRatio.c
3036  f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)  f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3037          cat \$^ > \$@          cat \$^ > \$@
3038    
3039  f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90  f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3040          cat \$^ > \$@          cat \$^ > \$@
3041    
3042  f95_test.out: f95_test_mods.f90 f95_test.f90  f95_test.out: f95_test_mods.f90 f95_test.f90
3043          f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1          f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3044          f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1          f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3045    
3046  # the file included below is created by the  # the file included below is created by the
3047  # postProcessor and its inclusion sets the  # postProcessor and its inclusion sets the
3048  # variable POSTPROCESSEDFILES  # variable POSTPROCESSEDFILES
3049  # used below. Because the file is made during  # used below. Because the file is made during
3050  # make it won't be read until the second (recursive)  # make it won't be read until the second (recursive)
3051  # invocation in the rule below  # invocation in the rule below
3052  -include postProcess.make  -include postProcess.make
3053    
# Line 2997  endif Line 3073  endif
3073  openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90  openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3074  .PHONY: openad  .PHONY: openad
3075    
3076  # create the module files  # create the module files
3077  %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk  %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3078          ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk          ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3079    
3080  # create the header files  # create the header files
3081  %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk  %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3082          ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)          ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3083    
3084  # change everybody else to use the new module files:  # change everybody else to use the new module files:
# Line 3024  CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS9 Line 3100  CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS9
3100  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3101          cat \$^ > \$@          cat \$^ > \$@
3102    
3103  # strip all comments and blanks to reduce  # strip all comments and blanks to reduce
3104  # the file size in order to reduce perl's memory requirements  # the file size in order to reduce perl's memory requirements
3105  ad_input_code_sf.f$FS90 : ad_input_code.f$FS90  ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3106          cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@          cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3107    
3108  # mfef90 preprocessing  # mfef90 preprocessing
3109  # expand statement functions  # expand statement functions
3110  # expose mfef90 specific substring handling  # expose mfef90 specific substring handling
3111  # add the w2f__types module  # add the w2f__types module
3112  ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90  ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3113          ./mfef90 -r8 -z -F -N132 \$<          ./mfef90 -r8 -z -F -N132 \$<
3114          mv \$<.B \$(basename \$<).B          mv \$<.B \$(basename \$<).B
3115          ./whirl2f -openad \$(basename \$<).B          ./whirl2f -openad \$(basename \$<).B
3116          cat w2f__types.f90 \$(basename \$<).w2f.f > \$@          cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3117    
3118  # canonicalizer  # canonicalizer
3119  ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py  ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3120          ./preProcess.py --timing -H -S \$< -o \$@          ./preProcess.py --timing --r8 -H -S \$< -o \$@
3121    
3122  # F -> WHIRL  # F -> WHIRL
3123  # note that the canonicalized version cuts off at col 72  # note that the canonicalized version cuts off at col 72
3124  # doing this also for string constants which is ok as long  # doing this also for string constants which is ok as long
3125  # as we are in fixed mode and cut of exactly there.  # as we are in fixed mode and cut of exactly there.
3126  # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)  # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3127  # characters respectively.  # characters respectively.
3128  ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90  ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3129          ./mfef90 -r8 -z -F \$<          ./mfef90 -r8 -z -F \$<
# Line 3067  ad_input_code_sf.w2f.pre.xb.x2w.B : ad_i Line 3143  ad_input_code_sf.w2f.pre.xb.x2w.B : ad_i
3143    
3144  # WHIRL' -> F'  # WHIRL' -> F'
3145  ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be  ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3146          ./whirl2f -FLIST:ftn_file=\$@ -openad \$<          ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3147    
3148  # insert template directives  # insert template directives
3149  ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash  ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
# Line 3076  ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f Line 3152  ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f
3152  PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F  PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3153  # postprocess F'  # postprocess F'
3154  postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)  postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3155          # the target is a placeholder to signal execution of the rule          # the target is a placeholder to signal execution of the rule
3156          touch \$@          touch \$@
3157          # this step also creates the file postProcess.make but we cannot          # this step also creates the file postProcess.make but we cannot
3158          # name it as the target or else make will try to remake it for          # name it as the target or else make will try to remake it for
3159          # the include directive above for any rule, e.g. make clean          # the include directive above for any rule, e.g. make clean
3160          ./postProcess.py --progress --timing -m r -i ../OAD_support/ad_inline.f --width 4 \$<          ./postProcess.py --progress --timing --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<
3161    
3162  # setup some links  # setup some links
3163  %.xsd:  %.xsd:
3164          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3165    
3166  mfef90:  mfef90:
3167          \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .          \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3168    
3169  # link the support files:  # link the support files:
3170  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3171          \$(LN) ../OAD_support/\$@ .          \$(LN) ../OAD_support/\$@ .
3172    
3173  whirl2xaif xaif2whirl:  whirl2xaif xaif2whirl:
3174          \$(LN) \${OPENADFORTTK}/bin/\$@ .          \$(LN) \${OPENADFORTTK}/bin/\$@ .
3175    
3176  preProcess.py postProcess.py:  preProcess.py postProcess.py:
3177          \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .          \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3178    
3179  whirl2f whirl2f_be:  whirl2f whirl2f_be:
# Line 3151  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3227  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3227  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3228    
3229  # Create special header files  # Create special header files
3230  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3231  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3232      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3233  else  else
# Line 3168  if test ! -f AD_CONFIG.h ; then Line 3244  if test ! -f AD_CONFIG.h ; then
3244      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
3245  fi  fi
3246    
   
3247  #  Write the "state" for future records  #  Write the "state" for future records
3248  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3249      printf "" > genmake_state      printf "" > genmake_state
3250      for i in $gm_state ; do      for i in $gm_state ; do
3251          t1="t2=\$$i"          t1="t2=\$$i"

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