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revision 1.1 by edhill, Sat Aug 16 14:01:08 2003 UTC revision 1.220 by jmc, Fri Jun 3 19:53:45 2011 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16  # Guess possible config options for this host  Usage: "$0" [OPTIONS]
17  find_possible_configs()  {    where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172      p_PLATFORM=`uname`"-"`uname -m`  # Search for particular CPP #cmds associated with packages
173      echo "The platform appears to be:"  # usage: test_for_package_in_cpp_options CPP_file package_name
174      echo "  "$p_PLATFORM  test_for_package_in_cpp_options() {
175        cpp_options=$1
176      p_LN=      pkg=$2
177      echo "test" > test      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
178      ln -s ./test link      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
179        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
180        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
181        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
182        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
183        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
184        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
185    }
186    
187    # Search for particular CPP #cmds associated with MPI
188    # usage: test_for_mpi_in_cpp_eeoptions CPP_file
189    test_for_mpi_in_cpp_eeoptions() {
190        cpp_options=$1
191        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
192        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
193        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
194        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
195        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
196        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
197        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
198        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
199    }
200    
201    # Search for particular string in a file. Return 1 if detected, 0 if not
202    # usage: test_for_string_in_file file string
203    test_for_string_in_file() {
204        file=$1
205        strng=$2
206        grep -i "$strng" $file > /dev/null 2>&1
207      RETVAL=$?      RETVAL=$?
208      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
209          p_LN="ln -s"          printf "Error: In $file there is an illegal line: "
210            grep -i "$strng" $file
211            exit 99
212        fi
213        return 0
214    }
215    
216    # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
217    # the package list.
218    expand_pkg_groups() {
219        new_packages=
220        if test -r $PKG_GROUPS ; then
221            cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
222            cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
223            matched=0
224            for i in $PACKAGES ; do
225                line=`grep "^ *$i" ./p2.tmp`
226                RETVAL=$?
227                if test "x$RETVAL" = x0 ; then
228                    matched=1
229                    replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
230                    echo "    replacing \"$i\" with:$replace"
231                    new_packages="$new_packages $replace"
232                else
233                    new_packages="$new_packages $i"
234                fi
235            done
236            PACKAGES=$new_packages
237            rm -f ./p[1,2].tmp
238            return $matched
239        else
240            echo "Warning: can't read package groups definition file: $PKG_GROUPS"
241        fi
242    }
243    
244    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
245    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
246    check_for_broken_Ff()  {
247        #  Do we have defaults for $FS and/or $FS90 ?
248        tfs=f
249        tfs9=f90
250        if test "x$FS" != x ; then
251            tfs="$FS"
252        fi
253        if test "x$FS90" != x ; then
254            tfs9="$FS90"
255        fi
256    
257        #  First check the ability to create a *.F/.f pair.
258        cat <<EOF >> genmake_hello.F
259          program hello
260          write(*,*) 'hi'
261          stop
262          end
263    EOF
264        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
265        RETVAL=$?
266        if test "x$RETVAL" != x0 ; then
267            if test "x$FS" = x ; then
268                FS='for'
269                FS90='fr9'
270                check_for_broken_Ff
271            else
272                cat <<EOF 2>&1
273    ERROR: Your file system cannot distinguish between *.F and *.f files
274      (fails the "cp" test) and this program cannot find a suitable
275      replacement extension.  Please try a different build environment or
276      contact the <MITgcm-support@mitgcm.org> list for help.
277    
278    EOF
279                exit -1
280            fi
281            return
282      fi      fi
283      rm -f test link      rm -f genmake_hello.*
284    
285      p_CPP=`which cpp`      #  Check the ability of ${MAKE} and ${LN} to use the current set
286            #  of extensions.
287        cat <<EOF >> genmake_hello.F
288          program hello
289          write(*,*) 'hi'
290          stop
291          end
292    EOF
293        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
294        cat <<EOF >> $MAKEFILE
295    .SUFFIXES:
296    .SUFFIXES: .$tfs .F
297    .F.$tfs:
298            $LN \$< \$@
299    EOF
300        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
301      RETVAL=$?      RETVAL=$?
302      if test "x${RETVAL}" = x0 ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
303          p_LN="ln -s"          if test "x$FS" = x ; then
304                FS='for'
305                FS90='fr9'
306                check_for_broken_Ff
307            else
308                cat <<EOF 2>&1
309    ERROR: Your file system cannot distinguish between *.F and *.f files
310      (fails the "make/ln" test) and this program cannot find a suitable
311      replacement extension.  Please try a different build environment or
312      contact the <MITgcm-support@mitgcm.org> list for help.
313    
314    EOF
315                exit -1
316                return
317            fi
318      fi      fi
319      rm -f test link      rm -f genmake_hello.* $MAKEFILE
320        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
321    
322      # look for possible fortran compilers      #  If we make it here, use the extensions
323      p_FC=      FS=$tfs
324      for c in f77 g77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 ; do      FS90=$tfs9
325          which $c > /dev/null 2>&1      return
326    }
327    
328    look_for_makedepend()  {
329    
330        #  The "original" makedepend is part of the Imake system that is
331        #  most often distributed with XFree86 or with an XFree86 source
332        #  package.  As a result, many machines (eg. generic Linux) do not
333        #  have a system-default "makedepend" available.  For those
334        #  systems, we have two fall-back options:
335        #
336        #    1) a makedepend implementation shipped with the cyrus-imapd
337        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
338        #
339        #    2) a known-buggy xmakedpend shell script
340        #
341        #  So the choices are, in order:
342        #
343        #    1) use the user-specified program
344        #    2) use a system-wide default
345        #    3) locally build and use the cyrus implementation
346        #    4) fall back to the buggy local xmakedpend script
347        #
348        echo >> $LOGFILE
349        echo "running: look_for_makedepend()" >> $LOGFILE
350        if test "x${MAKEDEPEND}" != x ; then
351            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
352            RETVAL=$?
353            if test x"$RETVAL" = x0 ; then
354                build_cyrus_makedepend
355                RETVAL=$?
356                if test "x$RETVAL" != x0 ; then
357                    echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'"
358                    MAKEDEPEND=
359                fi
360            else
361                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
362            fi
363        fi
364        if test "x${MAKEDEPEND}" = x ; then
365            which makedepend > /dev/null 2>&1
366            RV0=$?
367            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
368            #  echo 'MAKEFILE="'$MAKEFILE'"'
369            cat <<EOF >> $MAKEFILE
370    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
371    #
372    #   Some "makedepend" implementations will die if they cannot
373    #   find a Makefile -- so this file is here to gives them an
374    #   empty one to find and parse.
375    EOF
376            cat <<EOF >> genmake_tc.f
377          program test
378          write(*,*) 'test'
379          stop
380          end
381    EOF
382            makedepend genmake_tc.f > /dev/null 2>&1
383            RV1=$?
384            test -f $MAKEFILE  &&  rm -f $MAKEFILE
385            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
386            if test "x${RV0}${RV1}" = x00 ; then
387                MAKEDEPEND=makedepend
388                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
389            else
390                echo "    system-default makedepend not found. Try to build cyrus-makedepend"
391                #  Try to build the cyrus implementation
392                build_cyrus_makedepend
393                RETVAL=$?
394                if test "x$RETVAL" != x0 ; then
395                    echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend"
396                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
397                    echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
398                fi
399            fi
400        fi
401    }
402    
403    build_cyrus_makedepend()  {
404        echo >> $LOGFILE
405        echo "running: build_cyrus_makedepend()" >> $LOGFILE
406        rm -f ./genmake_cy_md
407        (
408            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
409                &&  ./configure > /dev/null 2>&1  \
410                &&  make > /dev/null 2>&1
411            if test -x ./makedepend.exe ; then
412                $LN ./makedepend.exe ./makedepend
413            fi
414            ./makedepend ifparser.c > /dev/null 2>&1  \
415                &&  echo "true"
416        ) > ./genmake_cy_md
417        grep true ./genmake_cy_md > /dev/null 2>&1
418        RETVAL=$?
419        rm -f ./genmake_cy_md
420        if test "x$RETVAL" = x0 ; then
421            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
422            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
423            return 0
424        else
425            echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
426            return 1
427        fi
428    }
429    
430    build_embed_encode()
431    {
432        printf "  building the embed-encode utility...  "
433        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
434            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
435                echo
436                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
437                echo
438                EMBED_SRC=f
439                return 1
440            fi
441            clist="cc gcc c89 $CC"
442            for ic in $clist ; do
443                comm="$ic -o encode_files encode_files.c"
444                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
445                RETVAL=$?
446                if test "x$RETVAL" = x0 ; then
447                    echo "OK"
448                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
449                    return 0
450                fi
451            done
452            echo
453            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
454            echo "      so it has been disabled"
455            echo
456            EMBED_SRC=f
457            return 1
458        fi
459        echo "OK"
460        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
461    }
462    
463    #  look for possible C compilers
464    look_for_C_compilers() {
465        echo >> $LOGFILE
466        echo "running: look_for_C_compilers()" >> $LOGFILE
467        rm -f ./genmake_hello.c  ./genmake_hello
468        cat >> genmake_hello.c << EOF
469    #include <stdio.h>
470    int main(int argc, char **argv) {
471      printf("Hello!\n");
472      return 0;
473    }
474    EOF
475        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
476        p_CC=
477        for c in $tmp ; do
478            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
479            echo $COMM >> $LOGFILE
480            $COMM >> $LOGFILE 2>&1
481          RETVAL=$?          RETVAL=$?
482          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
483              p_FC="$p_FC $c"              echo " $c test successful" >> $LOGFILE
484                p_CC="$p_CC $c"
485          fi          fi
486      done      done
487      echo "Possible FORTRAN compilers appear to be:  "      rm -f ./genmake_hello.c ./genmake_hello
488      if test "x${p_FC}" = x ; then      if test "x${p_CC}" = x ; then
489          echo "  None found!!!"          cat 1>&2 <<EOF
490    
491    Error: No C compilers were found in your path.  Please specify one using:
492    
493        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
494        2) the CC or MITGCM_CC environment variables.
495    
496    EOF
497            exit 1
498      else      else
499          echo "  "$p_FC          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
500            if test "x$CC" = x ; then
501                CC=`echo $p_CC | $AWK '{print $1}'`
502                echo "  Setting C compiler to: "$CC
503            fi
504      fi      fi
505        echo " --> set CC='$CC'" >> $LOGFILE
506    }
507    
508      # look for possible MPI libraries  # Guess possible config options for this host
509      mpi_libs=  find_possible_optfile()  {
510      mpi_fort=`which mpif77 2>/dev/null`  
511      RETVAL=$?      echo >> $LOGFILE
512      if test "x${RETVAL}" = x0 ; then      echo "running: find_possible_optfile()" >> $LOGFILE
513          cat >>test.f <<EOF      tmp1=`uname`"_"`uname -m`
514        PROGRAM HELLO      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
515        DO 10, I=1,10      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
516        PRINT *,'Hello World'      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
517     10 CONTINUE      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
518        STOP      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
519        END      PLATFORM=$tmp3
520        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
521        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
522        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
523    
524        #================================================================
525        #  look for possible FORTRAN compilers
526        echo "  look for possible FORTRAN compilers" >> $LOGFILE
527        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
528        p_FC=
529        rm -f ./genmake_hello.f
530        cat >> genmake_hello.f <<EOF
531          program hello
532          do i=1,3
533            print *, 'hello world : ', i
534          enddo
535          end
536  EOF  EOF
537          eval "$mpi_fort -showme test.f > out"      for f in $tmp ; do
538            COMM="$f -o genmake_hello genmake_hello.f"
539            echo $COMM >> $LOGFILE
540            $COMM >> $LOGFILE 2>&1
541          RETVAL=$?          RETVAL=$?
542          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
543              a=`cat out`              echo " $f test successful" >> $LOGFILE
544              for i in $a ; do              p_FC="$p_FC $f"
                 case $i in  
                     -*)  
                         mpi_libs="$mpi_libs $i" ;;  
                 esac  
             done  
             echo "The MPI libs appear to be:"  
             echo "  "$mpi_libs  
545          fi          fi
546          rm -f test.f out      done
547        rm -f ./genmake_hello.f ./genmake_hello
548        if test "x${p_FC}" = x ; then
549            cat 1>&2 <<EOF
550    
551    Error: No Fortran compilers were found in your path.  Please specify one using:
552    
553        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
554        2) a command-line option (eg. "-fc NAME"), or
555        3) the FC or MITGCM_FC environment variables.
556    
557    EOF
558            exit 1
559        else
560            echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
561      fi      fi
562    
563  }      #  Use the first of the compilers found in the current PATH
564        #  that has a correctly-named optfile
565        if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
566            for i in $p_FC ; do
567                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
568                if test -r $OPTFILE ; then
569                    echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
570                    break
571                fi
572            done
573        fi
574    
575  parse_options()  {      if test "x$OPTFILE" = x ; then
576            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
577      ac_prev=          if test ! -r $OPTFILE ; then
578      for ac_option in "${OPTIONS[@]}" ; do               echo "  I looked for the file "$OPTFILE" but did not find it"
579            fi
580          # echo "ac_option = :$ac_option:"      fi
581            
582          # If the previous option needs an argument, assign it.      if test "x$OPTFILE" = x ; then
583          if test -n "$ac_prev"; then          cat 1>&2 <<EOF
584              eval "$ac_prev=\$ac_option"  
585              ac_prev=  Error: No options file was found in:  $ROOTDIR/tools/build_options/
586              continue    that matches this platform ("$PLATFORM") and the compilers found in
587          fi    your path.  Please specify an "optfile" using:
588            
589          ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      1) the command line (eg. "-optfile=path/to/OPTFILE"), or
590                2) the MITGCM_OF environment variable.
591          case $ac_option in  
592                  If you need help, please contact the developers at <MITgcm-support@mitgcm.org>.
593              -help | --help | -h | --h)  
594                  usage ;;  EOF
595                        exit 1
596              -nooptfile | --nooptfile)      fi
597                  OPTFILE="NONE" ;;  
598              -optfile | --optfile | -of | --of)  #     # look for possible MPI libraries
599                  ac_prev=optfile ;;  #     mpi_libs=
600              -optfile=* | --optfile=* | -of=* | --of=*)  #     mpi_fort=`which mpif77 2>/dev/null`
601                  OPTFILE=$ac_optarg ;;  #     RETVAL=$?
602                #     if test "x${RETVAL}" = x0 ; then
603              -pdepend | --pdepend)  #       cat >>test.f <<EOF
604                  ac_prev=pdepend ;;  #       PROGRAM HELLO
605              -pdepend=* | --pdepend=*)  #       DO 10, I=1,10
606                  PDEPEND=$ac_optarg ;;  #       PRINT *,'Hello World'
607                #    10 CONTINUE
608              -pdefault | --pdefault)  #       STOP
609                  ac_prev=pdefault ;;  #       END
610              -pdefault=* | --pdefault=*)  # EOF
611                  PDEFAULT=$ac_optarg ;;  #       eval "$mpi_fort -showme test.f > out"
612                #       RETVAL=$?
613              -makefile | -ma)  #       if test "x${RETVAL}" = x0 ; then
614                  ac_prev=makefile ;;  #           a=`cat out`
615              --makefile=* | -ma=*)  #           for i in $a ; do
616                  MAKEFILE=$ac_optarg ;;  #               case $i in
617                #                   -*)
618              -platform | --platform | -pl | --pl)  #                       mpi_libs="$mpi_libs $i" ;;
619                  ac_prev=platform ;;  #               esac
620              -platform=* | --platform=* | -pl=* | --pl=*)  #           done
621                  PLATFORM=$ac_optarg ;;  #           echo "The MPI libs appear to be:"
622    #           echo "  "$mpi_libs
623              -rootdir | --rootdir | -rd | --rd)  #       fi
624                  ac_prev=rootdir ;;  #       rm -f test.f out
625              -rootdir=* | --rootdir=* | -rd=* | --rd=*)  #     fi
                 ROOTDIR=$ac_optarg ;;  
               
             -mods | --mods | -mo | --mo)  
                 ac_prev=mods ;;  
             -mods=* | --mods=* | -mo=* | --mo=*)  
                 MODS=$ac_optarg ;;  
               
             -disable | --disable)  
                 ac_prev=disable ;;  
             -disable=* | --disable=*)  
                 DISABLE=$ac_optarg ;;  
               
             -enable | --enable)  
                 ac_prev=enable ;;  
             -enable=* | --enable=*)  
                 ENABLE=$ac_optarg ;;  
               
             -noopt | --noopt)  
                 ac_prev=noopt ;;  
             -noopt=* | --noopt=*)  
                 NOOPT=$ac_optarg ;;  
               
 #           -cpp | --cpp)  
 #               ac_prev=cpp ;;  
 #           -cpp=* | --cpp=*)  
 #               CPP=$ac_optarg ;;  
               
             -fortran | --fortran | -fc | --fc)  
                 ac_prev=fc ;;  
             -fc=* | --fc=*)  
                 FC=$ac_optarg ;;  
               
             -ieee | --ieee)  
                 IEEE=1 ;;  
             -noieee | --noieee)  
                 IEEE=0 ;;  
               
             -mpi | --mpi)  
                 MPI=1 ;;  
             -nompi | --nompi)  
                 MPI=0 ;;  
               
             -jam | --jam)  
                 JAM=1 ;;  
             -nojam | --nojam)  
                 JAM=0 ;;  
               
             -*)  
                 echo "Error: unrecognized option: "$ac_option  
                 usage  
                 ;;  
               
             *)  
                 echo "Error: unrecognized argument: "$ac_option  
                 usage  
                 ;;  
               
         esac  
           
     done  
626  }  }
627    
628  #  Parse the package dependency information  #  Parse the package dependency information
# Line 199  get_pdepend_list()  { Line 631  get_pdepend_list()  {
631      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
632      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
633      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
634          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
635          > ./.pd_tmp          > ./.pd_tmp
636      source ./.pd_tmp      RETVAL=$?
637        if test ! "x${RETVAL}" = x0 ; then
638          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
639          exit 1
640        fi
641        . ./.pd_tmp
642      rm -f ./.pd_tmp      rm -f ./.pd_tmp
643    }
644    
645    #  Build a CPP macro to automate calling C routines from FORTRAN
646    get_fortran_c_namemangling()  {
647    
648        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
649        if test ! "x$FC_NAMEMANGLE" = x ; then
650            return 0
651        fi
652        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
653    
654      echo -n "PNAME = "${}      default_nm="#define FC_NAMEMANGLE(X) X ## _"
655    
656        cat > genmake_test.c <<EOF
657    void tcall( char * string ) { tsub( string ); }
658    EOF
659        COMM="$CC $CFLAGS -c genmake_test.c"
660        echo ' '$COMM >> $LOGFILE
661        $COMM >> $LOGFILE 2>&1
662        RETVAL=$?
663        if test "x$RETVAL" != x0 ; then
664            FC_NAMEMANGLE=$default_nm
665            cat <<EOF>> $LOGFILE
666    
667     WARNING: C test compile fails
668     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
669     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
670    EOF
671            return 1
672        fi
673        c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
674        RETVAL=$?
675        if test "x$RETVAL" != x0 ; then
676            FC_NAMEMANGLE=$default_nm
677            cat <<EOF>> $LOGFILE
678    
679     WARNING: The "nm" command failed.
680     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
681     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
682    EOF
683            return 1
684        fi
685        cat > genmake_tcomp.$FS <<EOF
686          subroutine tcall( string )
687          character*(*) string
688          call tsub( string )
689          end
690    EOF
691        COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
692        echo ' '$COMM >> $LOGFILE
693        $COMM >> $LOGFILE 2>&1
694        RETVAL=$?
695        if test "x$RETVAL" != x0 ; then
696            FC_NAMEMANGLE=$default_nm
697            cat <<EOF>> $LOGFILE
698    
699     WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
700     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
701     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
702    EOF
703            return 1
704        fi
705        f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
706        RETVAL=$?
707        if test "x$RETVAL" != x0 ; then
708            FC_NAMEMANGLE=$default_nm
709            cat <<EOF>> $LOGFILE
710    
711     WARNING: The "nm" command failed.
712     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
713     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
714    EOF
715            return 1
716        fi
717    
718        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
719        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
720        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
721        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
722    
723        nmangle="X"
724        if test "x$c_a" != "x$f_a" ; then
725            comm="echo x$f_a | sed -e 's|x$c_a||'"
726            a=`eval $comm`
727            nmangle="$a ## $nmangle"
728        fi
729        if test "x$c_b" != "x$f_b" ; then
730            comm="echo x$f_b | sed -e 's|x$c_b||'"
731            b=`eval $comm`
732            nmangle="$nmangle ## $b"
733        fi
734    
735        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
736    
737        #  cleanup the testing files
738        rm -f genmake_tcomp.* genmake_test.*
739    
740        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
741  }  }
742    
743    check_HAVE_CLOC()  {
744        echo >> $LOGFILE
745        echo "running: check_HAVE_CLOC()" >> $LOGFILE
746        get_fortran_c_namemangling
747        cat <<EOF > genmake_tc_1.c
748    $FC_NAMEMANGLE
749    #include <stdio.h>
750    #include <stdlib.h>
751    #include <unistd.h>
752    #include <assert.h>
753    #include <sys/time.h>
754    void FC_NAMEMANGLE(cloc) ( double *curtim )
755    {
756     struct timeval tv1;
757     gettimeofday(&tv1 , (void *)NULL );
758     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
759     *curtim = *curtim/1.E6;
760    }
761    EOF
762        COMM="$CC $CFLAGS -c genmake_tc_1.c"
763        echo $COMM >> $LOGFILE
764        $COMM >> $LOGFILE 2>&1
765        RET_C=$?
766        cat <<EOF > genmake_tc_2.$FS
767          program hello
768          REAL*8 wtime
769          external cloc
770          call cloc(wtime)
771          print *," HELLO WORLD", wtime
772          end
773    EOF
774        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
775        echo $COMM >> $LOGFILE
776        $COMM >> $LOGFILE 2>&1
777        RET_F=$?
778        test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
779        RETVAL=$?
780        if test "x$RETVAL" = x0 ; then
781            HAVE_CLOC=t
782            DEFINES="$DEFINES -DHAVE_CLOC"
783        fi
784        rm -f genmake_tc*
785        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
786    }
787    
788  #  Explain usage  check_HAVE_SIGREG()  {
789  usage()  {      if test ! "x$HAVE_SIGREG" = x ; then
790      echo ""          return
791      echo "Usage: "$0" [OPTIONS]"      fi
792      echo "  where [OPTIONS] can be:"$'\n'      echo >> $LOGFILE
793      echo "    -help | --help | -h | --h"      echo "running: check_HAVE_SIGREG()" >> $LOGFILE
794      echo "    -nooptfile | --nooptfile"      get_fortran_c_namemangling
795      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"      cat <<EOF > genmake_tc_1.c
796      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  $FC_NAMEMANGLE
797      echo "    -pdepend NAME | --pdepend NAME"  #include <stdlib.h>
798      echo "      -pdepend=NAME | --pdepend=NAME"  #include <stdio.h>
799      echo "    -pdefault NAME | --pdefault NAME"  #include <signal.h>
800      echo "      -pdefault=NAME | --pdefault=NAME"  #include <errno.h>
801      echo "    -makefile NAME | -ma NAME"  #include <ucontext.h>
802      echo "      --makefile=NAME | -ma=NAME"  
803      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"  int * ip;
804      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"  
805      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"  static void killhandler(
806      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"      unsigned int sn, siginfo_t  si, struct ucontext *sc )
807      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"  {
808      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"      *ip = *ip + 1;
809      echo "    -disable NAME | --disable NAME"      return;
     echo "      -disable=NAME | --disable=NAME"  
     echo "    -enable NAME | --enable NAME"  
     echo "      -enable=NAME | --enable=NAME"  
     echo "    -noopt NAME | --noopt NAME"  
     echo "      -noopt=NAME | --noopt=NAME"  
 #    echo "    -cpp NAME | --cpp NAME"  
 #    echo "      -cpp=NAME | --cpp=NAME"  
     echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"  
     echo "      -fc=NAME | --fc=NAME"  
     echo "    -[no]ieee | --[no]ieee"  
     echo "    -[no]mpi | --[no]mpi"  
     echo "    -[no]jam | --[no]jam"$'\n'  
     echo "  and NAME is a string such as:"$'\n'  
     echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"  
     echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"  
     echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"$'\n'  
     echo "  which, depending upon your shell, may need to be single-quoted"  
     echo "  if it contains spaces, dashes, or other special characters."  
     exit 1  
810  }  }
811    
812  # Dump all important state  void FC_NAMEMANGLE(sigreg) (int * aip)
813  dump_state()  {  {
814      fname=$1      struct sigaction s;
815      echo " " > $fname      ip = aip;
816      RETVAL=$?      s.sa_flags = SA_SIGINFO;
817      if test "x${RETVAL}" = x ; then      s.sa_sigaction = (void *)killhandler;
818          echo "Error: cannot write to $fname"      if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
819          exit 1          printf("Sigaction returned error = %d\n", errno);
820      fi          exit(0);
821      echo "makefile "$makefile > $fname      }
822        return;
823    }
824    EOF
825        COMM="$CC $CFLAGS -c genmake_tc_1.c"
826        echo $COMM >> $LOGFILE
827        $COMM >> $LOGFILE 2>&1
828        RET_C=$?
829        cat <<EOF > genmake_tc_2.$FS
830          program hello
831          integer anint
832          common /iv/ anint
833          external sigreg
834          call sigreg(anint)
835          end
836    EOF
837        cat genmake_tc_2.$FS >> $LOGFILE
838        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
839        echo $COMM >> $LOGFILE
840        $COMM >> $LOGFILE 2>&1
841        RETVAL=$?
842        if test "x$RETVAL" = x0 ; then
843            HAVE_SIGREG=t
844            DEFINES="$DEFINES -DHAVE_SIGREG"
845        fi
846        rm -f genmake_tc*
847        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
848  }  }
849    
850    check_HAVE_SETRLSTK()  {
851        if test "x$HAVE_SETRLSTK" = xt ; then
852            DEFINES="$DEFINES -DHAVE_SETRLSTK"
853            return
854        fi  
855        if test ! "x$HAVE_SETRLSTK" = x ; then
856            return
857        fi
858        echo >> $LOGFILE
859        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
860        get_fortran_c_namemangling
861        cat <<EOF > genmake_tc_1.c
862    $FC_NAMEMANGLE
863    #include <sys/time.h>
864    #include <sys/resource.h>
865    #include <unistd.h>
866    void FC_NAMEMANGLE(setrlstk) ()
867    {
868        struct rlimit rls;
869        rls.rlim_cur = RLIM_INFINITY;
870        rls.rlim_max = RLIM_INFINITY;
871        setrlimit(RLIMIT_STACK, &rls);
872        return;
873    }
874    EOF
875        COMM="$CC $CFLAGS -c genmake_tc_1.c"
876        echo $COMM >> $LOGFILE
877        $COMM >> $LOGFILE 2>&1
878        RET_C=$?
879        cat <<EOF > genmake_tc_2.$FS
880          program hello
881          external setrlstk
882          call setrlstk()
883          end
884    EOF
885        cat genmake_tc_2.$FS >> $LOGFILE
886        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
887        echo $COMM >> $LOGFILE
888        $COMM >> $LOGFILE 2>&1
889        RETVAL=$?
890        if test "x$RETVAL" = x0 ; then
891            HAVE_SETRLSTK=t
892            DEFINES="$DEFINES -DHAVE_SETRLSTK"
893        fi
894        rm -f genmake_tc*
895        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
896    }
897    
898  #eh3 # This is the generic configuration.  check_HAVE_STAT()  {
899  #eh3 set LN         = ( 'ln -s' )      echo >> $LOGFILE
900  #eh3 set CPP        = ( '/lib/cpp -P' )      echo "running: check_HAVE_STAT()" >> $LOGFILE
901  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      get_fortran_c_namemangling
902  #eh3 set KPP        = (  )      cat <<EOF > genmake_tc_1.c
903  #eh3 set FC         = ( 'f77' )  $FC_NAMEMANGLE
904  #eh3 set LINK       = $FC  #include <stdio.h>
905  #eh3 set MAKEDEPEND = ( 'makedepend' )  #include <stdlib.h>
906  #eh3 set INCLUDES   = ( -I. )  #include <unistd.h>
907  #eh3 set FFLAGS     = (  )  #include <sys/stat.h>
908  #eh3 set FOPTIM     = (  )  #include <sys/types.h>
909  #eh3 set CFLAGS     = (  )  void FC_NAMEMANGLE(tfsize) ( int *nbyte )
910  #eh3 set KFLAGS1    = (  )  {
911  #eh3 set KFLAGS2    = (  )      char name[512];
912  #eh3 set LIBS       = (  )      struct stat astat;
913  #eh3 set KPPFILES   = (  )  
914  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )      name[0] = 'a'; name[1] = '\0';
915  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )      if (! stat(name, &astat))
916            *nbyte = (int)(astat.st_size);
917        else
918            *nbyte = -1;
919    }
920    EOF
921        COMM="$CC $CFLAGS -c genmake_tc_1.c"
922        echo $COMM >> $LOGFILE
923        $COMM >> genmake_tc.log 2>&1
924        RET_C=$?
925        cat <<EOF > genmake_tc_2.$FS
926          program hello
927          integer nbyte
928          call tfsize(nbyte)
929          print *," HELLO WORLD", nbyte
930          end
931    EOF
932        cat genmake_tc_2.$FS >> $LOGFILE
933        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
934        echo $COMM >> $LOGFILE
935        $COMM >> genmake_tc.log 2>&1
936        RETVAL=$?
937        if test "x$RETVAL" = x0 ; then
938            HAVE_STAT=t
939            DEFINES="$DEFINES -DHAVE_STAT"
940        fi
941        rm -f genmake_tc*
942        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
943    }
944    
945    check_netcdf_libs()  {
946        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
947            return
948        fi
949        echo >> $LOGFILE
950        echo "running: check_netcdf_libs()" >> $LOGFILE
951        cat <<EOF > genmake_tnc.F
952          program fgennc
953    #include "netcdf.inc"
954    EOF
955        if test ! "x$MPI" = x ; then
956            echo '#include "mpif.h"' >> genmake_tnc.F
957        fi
958        cat <<EOF >> genmake_tnc.F
959          integer iret, ncid, xid
960          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
961          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
962          iret = nf_def_dim(ncid, 'X', 11, xid)
963          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
964          iret = nf_close(ncid)
965          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
966          end
967    EOF
968        echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
969        cat genmake_tnc.F >> genmake_tnc.log
970        echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
971        RET_CPP=f
972        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
973        echo "$COMM" >> genmake_tnc.log
974        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
975        if test "x$RET_CPP" = xf ; then
976            echo "  WARNING: CPP failed to pre-process the netcdf test." \
977                >> genmake_tnc.log
978            echo "    Please check that \$INCLUDES is properly set." \
979                >> genmake_tnc.log
980        fi
981        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
982        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
983        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
984            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
985        RET_COMPILE=$?
986        cat genmake_tnc.log >> $LOGFILE
987    
988        #EH3  Remove test program execution for machines that either disallow
989        #EH3  execution or cannot support it (eg. cross-compilers)
990        #EH3
991        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
992        #EH3 RETVAL=$?
993        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
994    
995        if test "x$RET_COMPILE" = x0 ; then
996            HAVE_NETCDF=t
997            echo "check_netcdf: successful" >> $LOGFILE
998        else
999            # try again with "-lnetcdf" added to the libs
1000            echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1001            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1002            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1003            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1004            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1005                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1006                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1007            RET_COMPILE=$?
1008            echo >> $LOGFILE
1009            cat genmake_tnc.log >> $LOGFILE
1010            if test "x$RET_COMPILE" = x0 ; then
1011                LIBS="$LIBS -lnetcdf"
1012                HAVE_NETCDF=t
1013                echo "check_netcdf: successful" >> $LOGFILE
1014            else
1015            # try again with "-lnetcdff" added to the libs
1016                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1017                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1018                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1019                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1020                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1021                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1022                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1023                RET_COMPILE=$?
1024                echo >> $LOGFILE
1025                cat genmake_tnc.log >> $LOGFILE
1026                if test "x$RET_COMPILE" = x0 ; then
1027                    LIBS="$LIBS -lnetcdff -lnetcdf"
1028                    HAVE_NETCDF=t
1029                    echo "check_netcdf: successful" >> $LOGFILE
1030                fi
1031            fi
1032        fi
1033        rm -f genmake_tnc*
1034        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1035    }
1036    
1037    
1038    ###############################################################################
1039    #   Sequential part of script starts here
1040    ###############################################################################
1041    
1042  #  Set defaults here  #  Set defaults here
1043    COMMANDL="$0 $@"
1044    
1045  PLATFORM=  PLATFORM=
1046  LN=  LN=
1047  S64=  S64=
1048  KPP=  KPP=
1049  FC=  #FC=
1050    #CC=gcc
1051    #CPP=
1052  LINK=  LINK=
1053    DEFINES=
1054  PACKAGES=  PACKAGES=
1055  ENABLE=  ENABLE=
1056  DISABLE=  DISABLE=
1057  MAKEFILE=  # MAKEFILE=
1058  MAKEDEPEND=  # MAKEDEPEND=
1059  PDEPEND=  PKG_DEPEND=
1060  PDEFAULT=  PKG_GROUPS=
1061    DUMPSTATE=f
1062  OPTFILE=  OPTFILE=
1063  INCLUDES=-I.  INCLUDES="-I. $INCLUDES"
1064  FFLAGS=  FFLAGS=
1065  FOPTIM=  FOPTIM=
1066    FEXTRAFLAGS=
1067    USE_EXTENDED_SRC=
1068    EXTENDED_SRC_FLAG=
1069    GET_FC_VERSION=
1070  CFLAGS=  CFLAGS=
1071  KFLAGS1=  KFLAGS1=
1072  KFLAGS2=  KFLAGS2=
1073    #LDADD=
1074  LIBS=  LIBS=
1075  KPPFILES=  KPPFILES=
1076  NOOPTFILES=  NOOPTFILES=
1077  NOOPTFLAGS=  NOOPTFLAGS=
1078    MPI=
1079    MPIPATH=
1080    OMP=
1081    OMPFLAG=
1082    USE_R4=
1083    TS=
1084    PAPIS=
1085    PCLS=
1086    FOOLAD=
1087    PAPI=
1088    PCL=
1089    HPMT=
1090    GSL=
1091    DEVEL=
1092    HAVE_TEST_L=
1093    
1094    # DEFINES checked by test compilation or command-line
1095    HAVE_SYSTEM=
1096    HAVE_FDATE=
1097    FC_NAMEMANGLE=
1098    HAVE_CLOC=
1099    # HAVE_SETRLSTK=
1100    HAVE_STAT=
1101    HAVE_NETCDF=
1102    HAVE_ETIME=
1103    IGNORE_TIME=
1104    
1105  MODS=  MODS=
1106  TOOLSDIR=  TOOLSDIR=
1107  SOURCEDIRS=  SOURCEDIRS=
1108  INCLUDEDIRS=  INCLUDEDIRS=
1109    STANDARDDIRS="USE_THE_DEFAULT"
1110    
1111    G2ARGS=
1112    BASH=
1113  PWD=`pwd`  PWD=`pwd`
1114  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1115  THISHOSTNAME=`hostname`  test "x$AWK" = x   &&  AWK=awk
1116    EMBED_SRC=
1117    THISHOST=`hostname`
1118  THISCWD=`pwd`  THISCWD=`pwd`
1119  THISDATE=`date`  THISDATE=`date`
1120    THISUSER=`echo $USER`
1121    THISVER=
1122  MACHINE=`uname -a`  MACHINE=`uname -a`
1123    EXECUTABLE=
1124    EXEHOOK=
1125    EXEDIR=
1126    PACKAGES_CONF=
1127    IEEE=
1128    if test "x$MITGCM_IEEE" != x ; then
1129        IEEE=$MITGCM_IEEE
1130    fi
1131    FS=
1132    FS90=
1133    
1134  echo $'\n'"===  Processing options files and arguments  ==="  AUTODIFF_PKG_USED=f
1135  gm_local="./gm_local"  AD_OPTFILE=
1136  echo -n "  getting local config information:  "  TAF=
1137  if test -e $gm_local ; then  AD_TAF_FLAGS=
1138    FTL_TAF_FLAGS=
1139    SVD_TAF_FLAGS=
1140    TAF_EXTRA=
1141    TAMC=
1142    AD_TAMC_FLAGS=
1143    FTL_TAF_FLAGS=
1144    SVD_TAMC_FLAGS=
1145    TAMC_EXTRA=
1146    
1147    #  The following state can be set directly by command-line switches
1148    gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS MAKEFILE MAKEDEPEND PLATFORM ROOTDIR MODS DISABLE ENABLE"
1149    gm_s2="FC CC USE_R4 TS PAPIS PCLS PAPI PCL HPMT IEEE DEVEL GSL MPI OMP DUMPSTATE STANDARDDIRS"
1150    
1151    #  The following state is not directly set by command-line switches
1152    gm_s3="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1153    gm_s4="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1154    gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD THISHOST THISUSER THISDATE THISVER MACHINE"
1155    gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1156    gm_s7="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME"
1157    
1158    #  The following are all related to adjoint/tangent-linear stuff
1159    gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1160    gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1161    gm_s12="TAF_EXTRA TAMC_EXTRA"
1162    
1163    gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
1164    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1165    
1166    cat <<EOF
1167    
1168    GENMAKE :
1169    
1170    A program for GENerating MAKEfiles for the MITgcm project.
1171       For a quick list of options, use "genmake2 -h"
1172    or for more detail see the Developer's HOWTO manual at:
1173       http://mitgcm.org/public/docs.html
1174    
1175    EOF
1176    
1177    LOGFILE="genmake.log"
1178    #- clean-up previous genmake logfiles:
1179    rm -f genmake_state genmake_*optfile $LOGFILE
1180    
1181    echo "===  Processing options files and arguments  ==="
1182    gm_local="genmake_local"
1183    printf "  getting local config information:  "
1184    if test -f $gm_local ; then
1185      echo "using $gm_local"      echo "using $gm_local"
1186      source $gm_local      . $gm_local
1187      echo "DISABLE=$DISABLE"$'\n'"ENABLE=$ENABLE"      # echo "DISABLE=$DISABLE"
1188        # echo "ENABLE=$ENABLE"
1189  else  else
1190      echo "none found"      echo "none found"
1191  fi  fi
1192    
1193  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1194  OPTIONS=()  #parse_options
1195  n=0  ac_prev=
1196  for i ; do  for ac_option in "$@" ; do
    setvar="OPTIONS[$n]='$i'"  
    #  echo "  $setvar"  
    eval "$setvar"  
    n=$(( $n + 1 ))  
 done  
 parse_options  
1197    
1198  echo "  getting OPTFILE information:  "      G2ARGS="$G2ARGS \"$ac_option\""
 if test "x${OPTFILE}" = x ; then  
     echo "Warning: no OPTFILE specified so we'll look for possible settings"  
     echo $'\n'"===  Searching for possible settings for OPTFILE  ==="  
     find_possible_configs  
 else  
     if test "x$OPTFILE" = xNONE ; then  
         echo "    OPTFILE=NONE so we'll try to use default settings"  
     else  
         if test -f "$OPTFILE" -a -r "$OPTFILE" ; then  
             echo "    using OPTFILE=\"$OPTFILE\""  
             source "$OPTFILE"  
             RETVAL=$?  
             if test "x$RETVAL" != x0 ; then  
                 echo -n "Error: failed to source OPTFILE \"$OPTFILE\""  
                 echo "--please check that variable syntax is bash-compatible"  
                 exit 1  
             fi  
         else  
             echo "Error: can't read OPTFILE=\"$OPTFILE\""  
             exit 1  
         fi  
     fi  
 fi  
1199    
1200  echo $'\n'"===  Setting defaults  ==="      # If the previous option needs an argument, assign it.
1201  echo -n "  Adding MODS directories:  "      if test -n "$ac_prev"; then
1202  for d in $MODS ; do          eval "$ac_prev=\$ac_option"
1203      if test ! -d $d ; then          ac_prev=
1204          echo $'\n\n'"Error: MODS directory \"$d\" not found!"          continue
         exit 1  
     else  
         echo -n " $d"  
         SOURCEDIRS="$SOURCEDIRS $d"  
         INCLUDEDIRS="$INCLUDEDIRS $d"  
1205      fi      fi
1206    
1207        ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1208    
1209        case $ac_option in
1210            
1211            -help | --help | -h | --h)
1212                usage ;;
1213            
1214            -nooptfile | --nooptfile)
1215                OPTFILE="NONE" ;;
1216            -optfile | --optfile | -of | --of)
1217                ac_prev=OPTFILE ;;
1218            -optfile=* | --optfile=* | -of=* | --of=*)
1219                OPTFILE=$ac_optarg ;;
1220            
1221            -adoptfile | --adoptfile | -adof | --adof)
1222                ac_prev=AD_OPTFILE ;;
1223            -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1224                AD_OPTFILE=$ac_optarg ;;
1225            
1226            -pdepend | --pdepend)
1227                ac_prev=PKG_DEPEND ;;
1228            -pdepend=* | --pdepend=*)
1229                PKG_DEPEND=$ac_optarg ;;
1230            
1231            -pgroups | --pgroups)
1232                ac_prev=PKG_GROUPS ;;
1233            -pgroups=* | --pgroups=*)
1234                PKG_GROUPS=$ac_optarg ;;
1235            
1236            -make | --make | -m | --m)
1237                ac_prev=MAKE ;;
1238            -make=* | --make=* | -m=* | --m=*)
1239                MAKE=$ac_optarg ;;
1240            
1241            -bash | --bash)
1242                ac_prev=BASH ;;
1243            -bash=* | --bash=*)
1244                BASH=$ac_optarg ;;
1245            
1246            -makedepend | --makedepend | -md | --md)
1247                ac_prev=MAKEDEPEND ;;
1248            -makedepend=* | --makedepend=* | -md=* | --md=*)
1249                MAKEDEPEND=$ac_optarg ;;
1250            
1251            -makefile | --makefile | -ma | --ma)
1252                ac_prev=MAKEFILE ;;
1253            -makefile=* | --makefile=* | -ma=* | --ma=*)
1254                MAKEFILE=$ac_optarg ;;
1255            
1256            -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1257                echo "ERROR: The platform option has been removed.  Please specify"
1258                echo "  the build options using the \"optfile\" mechanism."
1259                echo
1260                usage
1261                ;;
1262            
1263            -rootdir | --rootdir | -rd | --rd)
1264                ac_prev=ROOTDIR ;;
1265            -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1266                ROOTDIR=$ac_optarg ;;
1267            
1268            -mods | --mods | -mo | --mo)
1269                ac_prev=MODS ;;
1270            -mods=* | --mods=* | -mo=* | --mo=*)
1271                MODS=$ac_optarg ;;
1272            
1273            -disable | --disable)
1274                ac_prev=DISABLE ;;
1275            -disable=* | --disable=*)
1276                DISABLE=$ac_optarg ;;
1277            
1278            -enable | --enable)
1279                ac_prev=ENABLE ;;
1280            -enable=* | --enable=*)
1281                ENABLE=$ac_optarg ;;
1282            
1283            -standarddirs | --standarddirs)
1284                ac_prev=STANDARDDIRS ;;
1285            -standarddirs=* | --standarddirs=*)
1286                STANDARDDIRS=$ac_optarg ;;
1287    
1288    #           -cpp | --cpp)
1289    #               ac_prev=cpp ;;
1290    #           -cpp=* | --cpp=*)
1291    #               CPP=$ac_optarg ;;
1292            
1293            -cc | --cc)
1294                ac_prev=CC ;;
1295            -cc=* | --cc=*)
1296                CC=$ac_optarg ;;
1297            
1298            -fortran | --fortran | -fc | --fc)
1299                ac_prev=FC ;;
1300            -fc=* | --fc=*)
1301                FC=$ac_optarg ;;
1302            
1303            -fs | --fs)
1304                ac_prev=FS ;;
1305            -fs=* | --fs=*)
1306                FS=$ac_optarg ;;
1307            
1308            -fs90 | --fs90)
1309                ac_prev=FS90 ;;
1310            -fs90=* | --fs90=*)
1311                FS90=$ac_optarg ;;
1312            
1313            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1314                USE_R4=true ;;
1315    
1316            -ieee | --ieee)
1317                IEEE=true ;;
1318            -noieee | --noieee)
1319                echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1320            -devel | --devel)
1321                IEEE=true ; DEVEL=true ;;
1322            -gsl | --gsl)
1323                GSL=true ;;
1324    
1325            -ts | --ts)
1326                TS=true ;;
1327            -papis | --papis)
1328                PAPIS=true ;;
1329            -pcls | --pcls)
1330                PCLS=true ;;
1331            -foolad | --foolad)
1332                FOOLAD=true ;;
1333            -papi | --papi)
1334                PAPI=true ;;
1335            -pcl | --pcl)
1336                PCL=true ;;
1337            -hpmt | --hpmt)
1338                HPMT=true ;;
1339    
1340            -mpi | --mpi)
1341                MPI=true ;;
1342            -mpi=* | --mpi=*)
1343                MPIPATH=$ac_optarg
1344                MPI=true ;;
1345            
1346            -omp | --omp)
1347                OMP=true ;;
1348            -omp=* | --omp=*)
1349                OMPFLAG=$ac_optarg
1350                OMP=true ;;
1351            
1352            -ds | --ds)
1353                DUMPSTATE=t ;;
1354            
1355            -taf_extra | --taf_extra)
1356                ac_prev=TAF_EXTRA ;;
1357            -taf_extra=* | --taf_extra=*)
1358                TAF_EXTRA=$ac_optarg ;;
1359    
1360            -tamc_extra | --tamc_extra)
1361                ac_prev=TAMC_EXTRA ;;
1362            -tamc_extra=* | --tamc_extra=*)
1363                TAMC_EXTRA=$ac_optarg ;;
1364            
1365            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1366                IGNORE_TIME="-DIGNORE_TIME" ;;
1367    
1368            -es | --es | -embed-source | --embed-source)
1369                EMBED_SRC=t ;;
1370    
1371            -*)
1372                echo "Error: unrecognized option: "$ac_option
1373                usage
1374                ;;
1375            
1376            *)
1377                echo "Error: unrecognized argument: "$ac_option
1378                usage
1379                ;;
1380            
1381        esac
1382    
1383  done  done
 echo  
1384    
1385  if test "x$MAKEFILE" = x ; then  if test -f ./.genmakerc ; then
1386      MAKEFILE="Makefile"      echo
1387  fi      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1388  if test "x${PLATFORM}" = x ; then      echo "  file.  This file format is no longer supported.  For directions on"
1389      PLATFORM=$p_PLATFORM      echo "  how to setup and use the new \"genmake2\" script, please see:"
1390        echo "    http://mitgcm.org/public/devel_HOWTO/"
1391        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1392        echo "WARNING: ignore \"./.genmakerc\" and continue."
1393        echo
1394  fi  fi
1395    
1396    #  Find the MITgcm ${ROOTDIR}
1397  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1398      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1399        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1400          ROOTDIR=".."          ROOTDIR=".."
1401      else      else
1402          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1403              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1404                  ROOTDIR=$d                  ROOTDIR=$d
1405                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1406                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1407                  break                  break
1408              fi              fi
1409          done          done
# Line 414  if test ! -d ${ROOTDIR} ; then Line 1420  if test ! -d ${ROOTDIR} ; then
1420      exit 1      exit 1
1421  fi  fi
1422    
1423    #  Find the MITgcm ${THISVER}
1424    version_file="${ROOTDIR}/doc/tag-index"
1425    if test -f $version_file ; then
1426        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1427    #-  remove ./BUILD_INFO.h file if older than version_file
1428        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1429            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1430            rm -f ./BUILD_INFO.h
1431        fi
1432    fi
1433    
1434    if test "x$MAKEFILE" = x ; then
1435        MAKEFILE="Makefile"
1436    fi
1437    
1438    echo "  getting OPTFILE information:  "
1439    if test "x${OPTFILE}" = x ; then
1440        if test "x$MITGCM_OF" = x ; then
1441            echo "Warning: no OPTFILE specified so we'll look for possible settings"
1442            printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1443            find_possible_optfile
1444        else
1445            OPTFILE=$MITGCM_OF
1446        fi
1447    fi
1448    if test "x$OPTFILE" != xNONE ; then
1449        if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1450            echo "    using OPTFILE=\"$OPTFILE\""
1451            . "$OPTFILE"
1452            RETVAL=$?
1453            if test "x$RETVAL" != x0 ; then
1454                printf "Error: failed to source OPTFILE \"$OPTFILE\""
1455                echo "--please check that variable syntax is bash-compatible"
1456                exit 1
1457            fi
1458            if test "x$DUMPSTATE" = xt ; then
1459                cp -f $OPTFILE "genmake_optfile"
1460            fi
1461        else
1462            echo "Error: can't read OPTFILE=\"$OPTFILE\""
1463            exit 1
1464        fi
1465    fi
1466    
1467    echo "  getting AD_OPTFILE information:  "
1468    if test "x${AD_OPTFILE}" = x ; then
1469        if test "x$MITGCM_AD_OF" = x ; then
1470            AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1471        else
1472            AD_OPTFILE=$MITGCM_AD_OF
1473        fi
1474    fi
1475    if test "x${AD_OPTFILE}" != xNONE ; then
1476        if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1477            echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1478            . "$AD_OPTFILE"
1479            RETVAL=$?
1480            if test "x$RETVAL" != x0 ; then
1481                printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1482                echo "--please check that variable syntax is bash-compatible"
1483                exit 1
1484            fi
1485            if test "x$DUMPSTATE" = xt ; then
1486                cp -f $AD_OPTFILE "genmake_ad_optfile"
1487            fi
1488        else
1489            echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
1490            exit 1
1491        fi
1492    fi
1493    
1494    #====================================================================
1495    #  Set default values if not set by the optfile
1496    #
1497    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1498    #  either set defaults or complain and abort!
1499    if test ! "x$BASH" = x ; then
1500        # add a trailing space so that it works within the Makefile syntax (see below)
1501        BASH="$BASH "
1502    fi
1503    if test "x$FC" = x ; then
1504        cat <<EOF 1>&2
1505    
1506    Error: no Fortran compiler: please specify using one of the following:
1507      1) within the options file ("FC=...") as specified by "-of=OPTFILE"
1508      2) the "-fc=XXX" command-line option
1509      3) the "./genmake_local" file
1510    EOF
1511        exit 1
1512    fi
1513    if test "x$GET_FC_VERSION" != x ; then
1514      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1515      $FC $GET_FC_VERSION >> $LOGFILE 2>&1
1516      echo "<-- compiler version ----" >> $LOGFILE
1517    fi
1518    
1519    if test "x$CC" = x ; then
1520        look_for_C_compilers
1521    fi
1522    
1523    if test "x$LINK" = x ; then
1524        LINK=$FC
1525    fi
1526    if test "x$MAKE" = x ; then
1527        MAKE="make"
1528    fi
1529    if test "x$CPP" = x ; then
1530        CPP="cpp -traditional -P"
1531    fi
1532    #EH3 === UGLY ===
1533    #  The following is an ugly little hack to check for $CPP in /lib/ and
1534    #  it should eventually be replaced with a more general function that
1535    #  searches a combo of the user's path and a list of "usual suspects"
1536    #  to find the correct location for binaries such as $CPP.
1537    for i in " " "/lib/" ; do
1538        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1539    done
1540    #EH3 === UGLY ===
1541    echo "#define A a" | $CPP > test_cpp 2>&1
1542    RETVAL=$?
1543    if test "x$RETVAL" != x0 ; then
1544        cat <<EOF 1>&2
1545    
1546    Error: C pre-processor "$CPP" failed the test case: please specify using:
1547    
1548      1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1549      2) the "./genmake_local" file
1550      3) with the CPP environment variable
1551    
1552    EOF
1553        exit 1
1554    else
1555        rm -f test_cpp
1556    fi
1557    
1558    look_for_makedepend
1559    
1560    #  Check that soft-link command is set and usable
1561    if test "x$LN" = x ; then
1562        LN="ln -s"
1563    fi
1564    echo "test" > genmake_test_ln
1565    $LN genmake_test_ln genmake_tlink
1566    RETVAL=$?
1567    if test "x$RETVAL" != x0 ; then
1568        cat <<EOF 1>&2
1569    
1570    Error: The command "$LN" failed -- please specify a working soft-link
1571      command in the optfile.
1572    
1573    EOF
1574        exit 1
1575    fi
1576    test -L genmake_tlink > /dev/null 2>&1
1577    RETVAL=$?
1578    if test "x$RETVAL" = x0 ; then
1579        HAVE_TEST_L=t
1580    fi
1581    rm -f genmake_test_ln genmake_tlink
1582    
1583    #  Check for broken *.F/*.f handling and fix if possible
1584    check_for_broken_Ff
1585    
1586    if test ! "x$MPI" = x ; then
1587          echo "  Turning on MPI cpp macros"
1588          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1589    fi
1590    if test ! "x$OMP" = x ; then
1591          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1592          FFLAGS="$FFLAGS $OMPFLAG"
1593          F90FLAGS="$F90FLAGS $OMPFLAG"
1594          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1595    fi
1596    
1597    if test ! "x$USE_R4" = x ; then
1598          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1599          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1600    fi
1601    
1602    if test ! "x$TS" = x ; then
1603          echo "  Turning on timing per timestep"
1604          if test ! "x$FOOLAD" = x ; then
1605                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1606          else
1607                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1608          fi
1609          PACKAGES="$PACKAGES showflops"
1610    fi
1611    if test ! "x$PAPIS" = x ; then
1612          echo "  Turning on PAPI flop summary per timestep"
1613          echo "  Please make sure PAPIINC, PAPILIB are defined"
1614          if test ! "x$FOOLAD" = x ; then
1615                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1616          else
1617                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1618          fi
1619          INCLUDES="$INCLUDES $PAPIINC"
1620          LIBS="$LIBS $PAPILIB"
1621          PACKAGES="$PACKAGES showflops"
1622    fi
1623    if test ! "x$PCLS" = x ; then
1624          echo "  Turning on PCL counter summary per timestep"
1625          echo "  Please make sure PCLINC, PCLLIB are defined"
1626          if test ! "x$FOOLAD" = x ; then
1627                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1628          else
1629                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1630          fi
1631          INCLUDES="$INCLUDES $PCLINC"
1632          LIBS="$LIBS $PCLLIB"
1633          PACKAGES="$PACKAGES showflops"
1634    fi
1635    if test ! "x$PAPI" = x ; then
1636          if test ! "x$PAPIS" = x ; then
1637              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1638              echo "  Sticking with PAPI flop summary per timestep!"
1639          else
1640              echo "  Turning on performance analysis with PAPI"
1641              echo "  Please make sure PAPIINC, PAPILIB are defined"
1642              DEFINES="$DEFINES -DUSE_PAPI"
1643              INCLUDES="$INCLUDES $PAPIINC"
1644              LIBS="$LIBS $PAPILIB"
1645          fi
1646    fi
1647    if test ! "x$PCL" = x ; then
1648          if test ! "x$PCLS" = x ; then
1649              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1650              echo "  Sticking with PCL flop summary per timestep!"
1651          else
1652              echo "  Turning on performance analysis with PCL"
1653              echo "  Please make sure PCLINC, PCLLIB are defined"
1654              DEFINES="$DEFINES -DUSE_PCL"
1655              INCLUDES="$INCLUDES $PCLINC"
1656              LIBS="$LIBS $PCLLIB"
1657          fi
1658    fi
1659    if test ! "x$HPMT" = x ; then
1660          if test ! "x$PAPI" = x ; then
1661              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1662              echo "  Sticking with PAPI!"
1663          else if test ! "x$PCL" = x ; then
1664              echo "  PCL and the HPM Toolkit cannot co-exist!"
1665              echo "  Sticking with PCL!"
1666          else
1667              echo "  Turning on performance analysis with the HPM Toolkit"
1668              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1669              DEFINES="$DEFINES -DUSE_LIBHPM"
1670              INCLUDES="$INCLUDES $HPMTINC"
1671              LIBS="$LIBS $HPMTLIB"
1672          fi
1673          fi
1674    fi
1675    if test ! "x$GSL" = x ; then
1676          echo "  Turning on use of GSL to control floating point calculations"
1677          echo "  Please make sure GSLINC, GSLLIB are defined"
1678          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1679          INCLUDES="$INCLUDES $GSLINC"
1680          LIBS="$LIBS $GSLLIB"
1681    fi
1682    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1683    if test ! "x$USE_EXTENDED_SRC" = x ; then
1684          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1685          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1686    fi
1687    
1688    printf "\n===  Checking system libraries  ===\n"
1689    printf "  Do we have the system() command using $FC...  "
1690    cat > genmake_tcomp.$FS <<EOF
1691          program hello
1692          call system('echo hi')
1693          end
1694    EOF
1695    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1696    RETVAL=$?
1697    if test "x$RETVAL" = x0 ; then
1698        HAVE_SYSTEM=t
1699        DEFINES="$DEFINES -DHAVE_SYSTEM"
1700        echo "yes"
1701    else
1702        HAVE_SYSTEM=
1703        echo "no"
1704    fi
1705    rm -f genmake_tcomp*
1706    
1707    printf "  Do we have the fdate() command using $FC...  "
1708    cat > genmake_tcomp.$FS <<EOF
1709          program hello
1710          CHARACTER*(128) string
1711          string = ' '
1712          call fdate( string )
1713          print *, string
1714          end
1715    EOF
1716    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1717    RETVAL=$?
1718    if test "x$RETVAL" = x0 ; then
1719        HAVE_FDATE=t
1720        DEFINES="$DEFINES -DHAVE_FDATE"
1721        echo "yes"
1722    else
1723        HAVE_FDATE=
1724        echo "no"
1725    fi
1726    rm -f genmake_tcomp*
1727    
1728    printf "  Do we have the etime() command using $FC...  "
1729    cat > genmake_tcomp.$FS <<EOF
1730          program hello
1731          REAL*4 ACTUAL, TARRAY(2)
1732          EXTERNAL ETIME
1733          REAL*4 ETIME
1734          actual = etime( tarray )
1735          print *, tarray
1736          end
1737    EOF
1738    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1739    RETVAL=$?
1740    if test "x$RETVAL" = x0 ; then
1741        HAVE_ETIME=t
1742        DEFINES="$DEFINES -DHAVE_ETIME"
1743        echo "yes"
1744    else
1745        HAVE_ETIME=
1746        echo "no"
1747    fi
1748    rm -f genmake_tcomp*
1749    
1750    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1751    check_HAVE_CLOC
1752    if test "x$HAVE_CLOC" != x ; then
1753        echo "yes"
1754    else
1755        echo "no"
1756        if test "x$EMBED_SRC" = xt ; then
1757            echo "    WARNING: you requested file embedding but it has"
1758            echo "      been disabled since C code cannot be called"
1759            EMBED_SRC=
1760        fi
1761    fi
1762    rm -f genmake_t*
1763    
1764    printf "  Can we unlimit the stack size using $FC...  "
1765    check_HAVE_SETRLSTK
1766    if test "x$HAVE_SETRLSTK" = xt ; then
1767        echo "yes"
1768    else
1769        echo "no"
1770    fi
1771    rm -f genmake_t*
1772    
1773    printf "  Can we register a signal handler using $FC...  "
1774    check_HAVE_SIGREG
1775    if test "x$HAVE_SIGREG" = xt ; then
1776        echo "yes"
1777    else
1778        echo "no"
1779    fi
1780    rm -f genmake_t*
1781    
1782    printf "  Can we use stat() through C calls...  "
1783    check_HAVE_STAT
1784    if test "x$HAVE_STAT" != x ; then
1785        echo "yes"
1786    else
1787        echo "no"
1788    fi
1789    rm -f genmake_t*
1790    
1791    printf "  Can we create NetCDF-enabled binaries...  "
1792    check_netcdf_libs
1793    if test "x$HAVE_NETCDF" != x ; then
1794        echo "yes"
1795    else
1796        echo "no"
1797    fi
1798    DEFINES="$DEFINES $IGNORE_TIME"
1799    
1800    if test "x$EMBED_SRC" = xt ; then
1801        build_embed_encode
1802    fi
1803    if test "x$EMBED_SRC" = xt ; then
1804        ENABLE="$ENABLE embed_files"
1805    fi
1806    
1807    printf "\n===  Setting defaults  ===\n"
1808    printf "  Adding MODS directories: "
1809    for d in $MODS ; do
1810        if test ! -d $d ; then
1811            echo
1812            echo "Error: MODS directory \"$d\" not found!"
1813            exit 1
1814        else
1815            printf "$d "
1816            SOURCEDIRS="$SOURCEDIRS $d"
1817            INCLUDEDIRS="$INCLUDEDIRS $d"
1818        fi
1819    done
1820    echo
1821    
1822    #if test "x${PLATFORM}" = x ; then
1823    #    PLATFORM=$p_PLATFORM
1824    #fi
1825    
1826  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1827      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1828        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1829          EXEDIR=../exe          EXEDIR=../exe
1830      else      else
1831          EXEDIR=.          EXEDIR=.
# Line 426  if test ! -d ${EXEDIR} ; then Line 1836  if test ! -d ${EXEDIR} ; then
1836      exit 1      exit 1
1837  fi  fi
1838    
1839  if test "x${TOOLSDIR}" = x ; then  if test "x${TOOLSDIR}" = x ; then
1840      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1841    fi
1842    if test ! -d ${TOOLSDIR} ; then
1843        echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1844        exit 1
1845    fi
1846    if test "x$S64" = x ; then
1847        echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1848        RETVAL=$?
1849        if test "x${RETVAL}" = x0 ; then
1850            S64='$(TOOLSDIR)/set64bitConst.sh'
1851        else
1852            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1853            RETVAL=$?
1854            if test "x${RETVAL}" = x0 ; then
1855                S64='$(TOOLSDIR)/set64bitConst.csh'
1856            else
1857                cat <<EOF
1858    
1859    ERROR: neither of the two default scripts:
1860    
1861        ${TOOLSDIR}/set64bitConst.sh
1862        ${TOOLSDIR}/set64bitConst.csh
1863    
1864      are working so please check paths or specify (with \$S64) a
1865      working version of this script.
1866    
1867    EOF
1868                exit 1
1869            fi
1870        fi
1871    fi
1872    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1873    
1874    EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1875    
1876    #  Set Standard Code Directories:
1877    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1878        STANDARDDIRS="eesupp model"
1879  fi  fi
1880  if test ! -d ${TOOLSDIR} ; then  #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
1881      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"  echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
1882      exit 1  ckM=$?
1883    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
1884    ckE=$?
1885    if test $ckM = 0 -a $ckE = 1 ; then
1886        STANDARDDIRS="$STANDARDDIRS eesupp"
1887  fi  fi
1888    
 EXECUTABLE=${EXECUTABLE:-mitgcmuv}  
   
1889  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
1890  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
1891  #  they appear as regular source code  #  they appear as regular source code
1892  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1893      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1894      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
1895        ) > make_eesupp.errors 2>&1
1896      RETVAL=$?      RETVAL=$?
1897      if test "x${RETVAL}" == "x0" ; then      if test "x${RETVAL}" = x0 ; then
1898          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1899      else      else
1900          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1901          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1902          exit 1          exit 1
1903      fi      fi
1904  fi  fi
1905    
1906  echo $'\n'"===  Determining package settings  ==="  #same for pkg/exch2 and pkg/regrid
1907  if  test "x${PDEPEND}" = x ; then  for pdir in exch2 regrid ; do
1908        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1909            echo "  Making source files in pkg/${pdir} from templates"
1910            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
1911            ) > make_${pdir}.errors 2>&1
1912            RETVAL=$?
1913            if test "x${RETVAL}" = x0 ; then
1914                rm -f make_${pdir}.errors
1915            else
1916                echo "Error: problem encountered while building source files in pkg/${pdir}:"
1917                cat make_${pdir}.errors 1>&2
1918                exit 1
1919            fi
1920        fi
1921    done
1922    
1923    printf "\n===  Determining package settings  ===\n"
1924    if  test "x${PKG_DEPEND}" = x ; then
1925      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
1926      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
1927          PDEPEND=$tmp  fi
1928      else  if  test "x${PKG_DEPEND}" = x ; then
1929          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
1930          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
1931  else  else
1932      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
1933          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
1934          exit 1          exit 1
1935      fi      fi
1936        echo "  getting package dependency info from  $PKG_DEPEND"
1937    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
1938        get_pdepend_list $PKG_DEPEND
1939  fi  fi
1940  echo "  getting package dependency info from  $PDEPEND"  
1941  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
1942  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
1943  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
1944      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \  if test "x${PKG_GROUPS}" = x ; then
1945      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
1946  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
1947  if test ! "x${RETVAL}" = x0 ; then  fi
1948      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
1949      exit 1          echo "Warning:  No package groups information was specified."
1950            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
1951    else
1952        if test ! -r ${PKG_GROUPS} ; then
1953            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
1954            exit 1
1955        fi
1956        echo "  getting package groups info from      $PKG_GROUPS"
1957  fi  fi
 source ./.pd_tmp  
 rm -f ./.pd_tmp  
1958    
1959  echo  -n "  checking default package list:  "  #  Search for packages to compile.
1960  if test "x${PDEFAULT}" = x ; then  echo "  checking list of packages to compile:"
1961      PDEFAULT="$ROOTDIR/pkg/pkg_default"  PKG_LIST=
1962    if test "x${PKG_LIST}" = x ; then
1963        for i in "." $MODS ; do
1964            if test -r $i"/packages.conf" ; then
1965                    PKG_LIST=$i"/packages.conf"
1966                    break
1967            fi
1968        done
1969  fi  fi
1970  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PKG_LIST}" = x ; then
1971      echo "default packages file disabled"      pkg_list='default_pkg_list'
1972        if test "x${PKG_GROUPS}" = x ; then
1973            echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
1974            exit 1
1975        fi
1976  else  else
1977      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
1978          echo ""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
1979          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          exit 1
1980      else      else
1981          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
1982          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1983          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1984          RETVAL=$?          RETVAL=$?
1985          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1986              echo -n "Error: can't parse default package list "              printf "Error: can't parse package list "
1987              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
1988              exit 1              exit 1
1989          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    packages are:  $PACKAGES"  
1990      fi      fi
1991  fi  fi
1992    for i in $pkg_list ; do
1993        PACKAGES="$PACKAGES $i"
1994    done
1995    echo     "    before group expansion packages are:$PACKAGES"
1996    if test "x${PKG_GROUPS}" != x ; then
1997        RET=1
1998        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1999        echo "    after group expansion packages are: $PACKAGES"
2000    fi
2001    
2002  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2003    echo "" > ./.tmp_pack
2004    for i in $PACKAGES ; do
2005        echo $i >> ./.tmp_pack
2006    done
2007    for i in `grep  "-" ./.tmp_pack` ; do
2008        j=`echo $i | sed 's/[-]//'`
2009        DISABLE="$DISABLE $j"
2010    done
2011  pack=  pack=
2012  for p in $PACKAGES ; do  for p in $PACKAGES ; do
2013      addit="t"      addit="t"
# Line 523  for p in $PACKAGES ; do Line 2022  for p in $PACKAGES ; do
2022  done  done
2023  PACKAGES="$pack"  PACKAGES="$pack"
2024  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2025  rm -f ./.tmp_pack  echo "" > ./.tmp_pack
2026  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2027    # Test if each explicitly referenced package exists
2028  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2029      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
2030          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""      if test ! -d "$ROOTDIR/pkg/$j" ; then
2031          exit 1          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2032            exit 1
2033      fi      fi
2034      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2035  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
2036  PACKAGES=  PACKAGES=
2037  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
2038      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2039  done  done
2040  echo "    packages are:  $PACKAGES"  rm -f ./.tmp_pack
2041    echo "    packages are: $PACKAGES"
2042    
2043    #  Check for package MNC: if NetCDF is available, then build the MNC
2044    #  template files ; otherwise, delete mnc from the list of packages.
2045    echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2046    mnc_in=$?
2047    if test "x$HAVE_NETCDF" != xt ; then
2048        if test "x$mnc_in" = x0 ; then
2049            cat <<EOF
2050    *********************************************************************
2051    WARNING: the "mnc" package was enabled but tests failed to compile
2052      NetCDF applications.  Please check that:
2053    
2054      1) NetCDF is correctly installed for this compiler and
2055      2) the LIBS variable (within the "optfile") specifies the correct
2056           NetCDF library to link against.
2057    
2058      Due to this failure, the "mnc" package is now DISABLED.
2059    *********************************************************************
2060    EOF
2061            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2062            DISABLE="$DISABLE mnc"
2063        else
2064        #  this prevent to add mnc (due to pdepend rules) if not available
2065            DISABLE="$DISABLE mnc"
2066        fi
2067    else
2068        # we have NetCDF, we try to build MNC template files
2069        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2070        RETVAL=$?
2071        if test "x${RETVAL}" = x0 ; then
2072            rm -f make_mnc.errors
2073        else
2074            echo "Error: problem encountered while building source files in pkg/mnc:"
2075            cat make_mnc.errors 1>&2
2076            if test "x$mnc_in" = x0 ; then
2077                exit 1
2078            else
2079                DISABLE="$DISABLE mnc"
2080            fi
2081        fi
2082    fi
2083    
2084    #  Check for package PROFILES: if NetCDF is not available,
2085    #  then delete profiles from the list of available packages.
2086    if test "x$HAVE_NETCDF" != xt ; then
2087        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2088        RETVAL=$?
2089        if test "x$RETVAL" = x0 ; then
2090            cat <<EOF
2091    *********************************************************************
2092    WARNING: the "profiles" package was enabled but tests failed to
2093      compile NetCDF applications.  Please check that:
2094    
2095      1) NetCDF is correctly installed for this compiler and
2096      2) the LIBS variable (within the "optfile") specifies the correct
2097           NetCDF library to link against.
2098    
2099      Due to this failure, the "profiles" package is now DISABLED.
2100    *********************************************************************
2101    EOF
2102            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2103            DISABLE="$DISABLE profiles"
2104        else
2105        #  this prevent to add profiles (due to pdepend rules) if not available
2106            DISABLE="$DISABLE profiles"
2107        fi
2108    fi
2109    
2110  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2111  ck=    echo "  applying package dependency rules"
2112  while test "x$ck" != xtt ; do    ck=
2113      while test "x$ck" != xtt ; do
2114      i=0      i=0
2115      rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2116      while test $i -lt $rtot ; do      rtot=$nname
2117        while test $i -le $rtot ; do
2118    
2119          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2120          pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
2121            tmp="pname=\"\$PNAME_$i\""
2122            eval $tmp
2123          pin="f"          pin="f"
2124          for p in $PACKAGES ; do          for p in $PACKAGES ; do
2125              if test "x$p" = "x$pname" ; then              if test "x$p" = "x$pname" ; then
2126                  pin="t"                  pin="t"
2127              fi              fi
2128          done          done
2129            #  or in the current $STANDARDDIRS list?
2130            for p in $STANDARDDIRS ; do
2131                if test "x$p" = "x$pname" ; then pin="t" ; fi
2132            done
2133    
2134          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2135            tmp="dname=\"\$DNAME_$i\""
2136            eval $tmp
2137          plus="-"          plus="-"
2138          echo "${DNAME[$i]}" | grep '^+' > /dev/null 2>&1          echo $dname | grep '^+' > /dev/null 2>&1
2139          RETVAL=$?          RETVAL=$?
2140          if test "x$RETVAL" = x0 ; then          if test "x$RETVAL" = x0 ; then
2141              plus="+"              plus="+"
2142          fi          fi
2143    
2144          #  Is $dname in the current $PACKAGES list?          #  Is $dname in the current $PACKAGES list?
2145          dname=`echo ${DNAME[$i]} | sed -e 's/^[+-]//'`          dname=`echo $dname | sed -e 's/^[+-]//'`
2146          din="f"          din="f"
2147          for p in $PACKAGES ; do          for p in $PACKAGES ; do
2148              if test "x$p" = "x$dname" ; then              if test "x$p" = "x$dname" ; then
# Line 575  while test "x$ck" != xtt ; do Line 2152  while test "x$ck" != xtt ; do
2152    
2153          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2154          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2155                #echo "   " $pname ": need to add :" $dname
2156              in_dis="f"              in_dis="f"
2157              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2158                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 595  while test "x$ck" != xtt ; do Line 2173  while test "x$ck" != xtt ; do
2173          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2174          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2175              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2176              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2177              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2178              exit 1              exit 1
2179          fi          fi
2180          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2181            #i=$(( $i + 1 ))
2182      done      done
2183      ck=$ck"t"      ck=$ck"t"
2184  done    done
2185  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2186    fi
2187  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2188      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2189      if test -d $adr ; then      if test -d $adr ; then
2190          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
2191          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
2192            if test "x$i" = xautodiff ; then
2193                AUTODIFF_PKG_USED=t
2194            fi
2195      else      else
2196          echo "Error: the directory \"$adr\" for package $i doesn't exist"          echo "Error: the directory \"$adr\" for package $i doesn't exist"
2197          exit 1          exit 1
2198      fi      fi
2199  done  done
2200    
2201  #  This is compatible with the old genmake.  The "DISABLE_*" flags  # Create a list of #define and #undef to enable/disable packages
2202  #  need to be replaced by the "ALLOW_*" flags set below.  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2203  #  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2204  # echo -n "  Setting package-specific CPP flags:  "  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
 echo "  Setting package-specific CPP flags in CPP_OPTIONS.h:"  
 CPP_OPTIONS=  
 spaths=". $SOURCEDIRS"  
 for i in $spaths ; do  
     try="$i/CPP_OPTIONS.h"  
     #  echo -n "    trying $try : "  
     if test -f $try -a -r $try ; then  
         echo "    found CPP_OPTIONS=\"$try\""  
         CPP_OPTIONS="$try"  
         if test "x$i" != "x." ; then  
             cp -f $CPP_OPTIONS .  
         fi  
         break  
     fi  
 done  
 if test "x$CPP_OPTIONS" = x ; then  
     echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"  
     exit 1  
 fi  
 if test -e CPP_OPTIONS.h ; then  
     if test ! -e CPP_OPTIONS.h.bak ; then  
         cp -f CPP_OPTIONS.h CPP_OPTIONS.h.bak  
     fi  
     cat CPP_OPTIONS.h \  
         | awk 'BEGIN{p=1;} ($1=="C===" && $2=="GENMAKE"){p=0;} {if (p==1) print $0}' \  
         > CPP_OPTIONS.h.tmp  
 fi  
 cat <<EOF >>CPP_OPTIONS.h.tmp  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please edit  
 C  them only if you know what you're doing.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 C  Packages disabled by genmake:  
 EOF  
 #  The following UGLY HACK sets multiple "#undef"s and it needs to go  
 #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  
2205  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2206  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2207  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2208  all_pack=  all_pack=
2209    DISABLED_PACKAGES=
2210  for n in $names ; do  for n in $names ; do
2211      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2212          has_pack="f"          has_pack="f"
# Line 686  for n in $names ; do Line 2217  for n in $names ; do
2217              fi              fi
2218          done          done
2219          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2220              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2221              echo "#undef $undef" >> CPP_OPTIONS.h.tmp              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 generic_advdiff)  
                     DEFINES="$DEFINES -DDISABLE_GENERIC_ADVDIFF"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
2222          fi          fi
2223      fi      fi
2224  done  done
2225  cat <<EOF >>CPP_OPTIONS.h.tmp  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2226  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2227      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2228      echo "#define $def" >> CPP_OPTIONS.h.tmp      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2229    #eh3 DEFINES="$DEFINES -D$def"
2230    
2231  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2232      case $i in      case $i in
2233          aim_v23)          aim_v23)
2234              echo "#define   ALLOW_AIM" >> CPP_OPTIONS.h.tmp              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2235                echo "Warning: ALLOW_AIM is set to enable aim_v23."
2236              ;;              ;;
2237      esac      esac
2238  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2239    
2240  done  done
 mv -f CPP_OPTIONS.h.tmp CPP_OPTIONS.h  
2241    
2242  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2243  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2244  STANDARDDIRS=${STANDARDDIRS:-"eesupp model"}  if test "x$STANDARDDIRS" != x ; then
2245  for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2246      adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
2247      if test ! -d $adr ; then          if test ! -d $adr ; then
2248          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2249          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2250          exit 1              exit 1
2251      else          else
2252          SOURCEDIRS="$SOURCEDIRS $adr"              SOURCEDIRS="$SOURCEDIRS $adr"
2253      fi          fi
2254      adr="$ROOTDIR/$d/inc"          adr="$ROOTDIR/$d/inc"
2255      if test ! -d $adr ; then          if test ! -d $adr ; then
2256          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2257          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2258          exit 1              exit 1
2259      else          else
2260          INCLUDEDIRS="$INCLUDEDIRS $adr"              INCLUDEDIRS="$INCLUDEDIRS $adr"
2261            fi
2262        done
2263    fi
2264    
2265    echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2266    echo "    of \"#define \"-type statements that are no longer allowed:"
2267    CPP_OPTIONS=
2268    CPP_EEOPTIONS=
2269    spaths=". $INCLUDEDIRS"
2270    names=`ls -1 "$ROOTDIR/pkg"`
2271    for i in $spaths ; do
2272        try="$i/CPP_OPTIONS.h"
2273        if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2274            echo "    found CPP_OPTIONS=\"$try\""
2275            CPP_OPTIONS="$try"
2276            # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2277            for n in $names ; do
2278                test_for_package_in_cpp_options $CPP_OPTIONS $n
2279            done
2280        fi
2281        try="$i/CPP_EEOPTIONS.h"
2282        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2283            echo "    found CPP_EEOPTIONS=\"$try\""
2284            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2285    #**** not yet enabled ****
2286    #        test_for_mpi_in_cpp_eeoptions $try
2287    #**** not yet enabled ****
2288            CPP_EEOPTIONS="$try"
2289      fi      fi
2290  done  done
2291    if test "x$CPP_OPTIONS" = x ; then
2292        echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2293        exit 1
2294    fi
2295    
2296    #  Here, we build the list of files to be "run through" the adjoint
2297    #  compiler.
2298    if test -f ./adSrcFiles.tmp ; then
2299        rm -f ./adSrcFiles.tmp
2300    fi
2301    echo "  Creating the list of files for the adjoint compiler."
2302    touch adSrcFiles.tmp
2303    for i in $SOURCEDIRS ; do
2304        list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2305        for j in $list_files ; do
2306            cat $i/$j >> adSrcFiles.tmp
2307        done
2308    done
2309    if test ! "x"$FS = "x.f" ; then
2310        cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2311        mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2312    fi
2313    
2314  echo $'\n'"===  Creating the Makefile  ==="  echo
2315    echo "===  Creating the Makefile  ==="
2316  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2317  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2318      if test -d $i ; then      if test ! -d $i ; then
         INCLUDES="$INCLUDES -I$i"  
     else  
2319          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2320      fi      fi
2321  done  done
2322    
2323    if test ! "x$DIVA" = x ; then
2324        echo "  Creating the pseudo-MPI include directory"
2325        INCLUDES="-I./mpi_headers $INCLUDES"
2326        rm -rf ./mpi_headers
2327        mkdir -p ./mpi_headers
2328    
2329        if test "x$MPIINCLUDEDIR" = x ; then
2330            if test "x$MPIHOME" = x ; then
2331                MPIHOME='/usr'
2332            fi
2333            MPIINCLUDEDIR='$MPIHOME/include'
2334        fi
2335    
2336        if test -r $MPIINCLUDEDIR/mpif.h ; then
2337            for i in $MPI_HEADER_FILES; do
2338                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2339            done
2340    
2341            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2342        else
2343            echo " We cannot create a copy of mpif.h!"
2344    #       exit -1
2345        fi
2346    fi
2347    
2348  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2349  rm -rf .links.tmp  rm -rf .links.tmp
2350  mkdir .links.tmp  mkdir .links.tmp
2351    touch .links.tmp/foo
2352    if test ! -r ".links.tmp/foo" ; then
2353        echo
2354        echo "ERROR : something is wrong with your directory permissions or"
2355        echo "   your user file-creation mask (\"umask\") since creating a"
2356        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2357        echo "   not working.  Please try setting your umask to something"
2358        echo "   sane such as:"
2359        echo
2360        echo "      umask 0002"
2361        echo
2362        echo "   and please verify that you have the proper permissions for"
2363        echo "   creating sub-directories and then reading files created"
2364        echo "   within them."
2365        echo
2366        exit 1
2367    fi
2368    rm -f .links.tmp/foo
2369    
2370    if test "x$OPENAD" != x ; then
2371        OAD_DONT_COMPILE="/dev/null"
2372        OAD_DONT_TRANSFORM="/dev/null"
2373        OAD_KEEP_ORIGINAL="/dev/null"
2374        OAD_CB2M_FILES="/dev/null"
2375        echo "  looking for dontCompile file:  "
2376        for i in "." $MODS ; do
2377            if test -r $i"/dontCompile" ; then
2378                OAD_DONT_COMPILE=$i"/dontCompile"
2379                echo "     found $OAD_DONT_COMPILE"
2380                break
2381            fi
2382        done
2383        echo "  looking for dontTransform file:  "
2384        for i in "." $MODS ; do
2385            if test -r $i"/dontTransform" ; then
2386                OAD_DONT_TRANSFORM=$i"/dontTransform"
2387                echo "     found $OAD_DONT_TRANSFORM"
2388                break
2389            fi
2390        done
2391        echo "  looking for keepOriginal file:  "
2392        for i in "." $MODS ; do
2393            if test -r $i"/keepOriginal" ; then
2394                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2395                echo "     found $OAD_KEEP_ORIGINAL"
2396                break
2397            fi
2398        done
2399        echo "  looking for cb2mFiles:  "
2400        for i in "." $MODS ; do
2401            if test -r $i"/cb2mFiles" ; then
2402                OAD_CB2M_FILES=$i"/cb2mFiles"
2403                echo "     found $OAD_CB2M_FILES"
2404                break
2405            fi
2406        done
2407        echo "   OpenAD exceptions:  "
2408    fi
2409    
2410  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2411  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2412  echo -n 'SRCFILES = ' > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2413  echo -n 'CSRCFILES = ' > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2414  echo -n 'HEADERFILES = ' > hlist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2415  alldirs=". $SOURCEDIRS $INCLUDEDIRS"  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2416    printf 'H_SRC_FILES = '   > hsrclist.tmp
2417    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2418    alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2419  for d in $alldirs ; do  for d in $alldirs ; do
2420      deplist=      deplist=
2421      sfiles=`( cd $d; echo *.[h,c,F] )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2422        sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2423        if test "x$OPENAD" != x ; then
2424            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2425        fi
2426      for sf in $sfiles ; do      for sf in $sfiles ; do
2427          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2428              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2429                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  ignore_f=f
2430                  touch .links.tmp/$sf                  case $d/$sf in
2431                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2432                  case $extn in                          ignore_f=t
2433                      F)                          ;;
2434                          echo    " \\"  >> srclist.inc                    ./AD_CONFIG.h)
2435                          echo -n " $sf" >> srclist.inc                          ignore_f=t
2436                            ;;
2437                      ./FC_NAMEMANGLE.h)
2438                            ignore_f=t
2439                            ;;
2440                      ./BUILD_INFO.h)
2441                            ignore_f=t
2442                            ;;
2443                      ./EMBEDDED_FILES.h)
2444                            ignore_f=t
2445                            ;;
2446                      *)
2447                            #  For the local directory *ONLY*,
2448                            #  ignore all soft-links
2449                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2450                                ignore_f=t
2451                            else
2452                                touch .links.tmp/$sf
2453                                deplist="$deplist $sf"
2454                            fi
2455                            ;;
2456                    esac
2457                    if test "x$ignore_f" = xf ; then
2458                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2459                        case $extn in
2460                          F)
2461                            echo    " \\"  >> F77srclist.tmp
2462                            printf " $sf" >> F77srclist.tmp
2463                            if test "x$OPENAD" != x ; then
2464                                basename=${sf%%.F}
2465                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2466                                if test -z "$isAD" ; then
2467                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2468                                    if test -z "$toBeIgnored" ; then
2469                                        echo    " \\"  >> nonADF77srclist.tmp
2470                                        printf " $sf" >> nonADF77srclist.tmp
2471                                    else
2472                                        echo "    not to be compiled   :  $sf"
2473                                    fi
2474                                else # file is initially listed as an AD file we want to exclude it
2475                                     # or we want to retain the untransformed version
2476                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2477                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2478                                    if test -n "$notToBeTransformed"; then
2479                                        echo "    not to be transformed:  $sf"
2480                                    fi
2481                                    if test -n "$untransformedVersionToBeKept" ; then
2482                                        echo "    original to be kept  :  $sf"
2483                                    fi
2484                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2485                                        echo    " \\"  >> nonADF77srclist.tmp
2486                                        printf " $sf" >> nonADF77srclist.tmp
2487                                    fi
2488                                fi
2489                            fi
2490                            ;;
2491                        F90)
2492                            echo    " \\"  >> F90srclist.tmp
2493                            printf " $sf" >> F90srclist.tmp
2494                          ;;                          ;;
2495                      c)                      c)
2496                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2497                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2498                          ;;                          ;;
2499                      h)                      h)
2500                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2501                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2502                            ;;
2503                        flow)
2504                            echo    " \\"  >> ad_flow_files.tmp
2505                            printf " $sf" >> ad_flow_files.tmp
2506                          ;;                          ;;
2507                  esac                     esac
2508                    fi
2509              fi              fi
2510          fi          fi
2511      done      done
2512      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2513          echo $'\n'"#  These files are linked from $d" >> srclinks.tmp        if test "$d" != "." ; then
2514            echo "" >> srclinks.tmp
2515            echo "#  These files are linked from $d" >> srclinks.tmp
2516          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2517          echo $'\t$(LN) '$d'/$@ $@' >> srclinks.tmp  # We need to make sure that the link isn't already there.
2518    # This may happen when make thinks that a header file has to be "remade"
2519    # because a module it depends on has changed.  In this case we do nothing.
2520            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2521          fi
2522      fi      fi
2523  done  done
2524  rm -rf .links.tmp  rm -rf .links.tmp
2525  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2526  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2527  echo "" >> hlist.inc  echo "" >> csrclist.tmp
2528    echo "" >> F90srclist.tmp
2529    echo "" >> hsrclist.tmp
2530    echo "" >> ad_flow_files.tmp
2531    
2532    CMDLINE=$0
2533    for xx in "$@" ; do nw=`echo $xx | wc -w`
2534        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2535                            else CMDLINE="$CMDLINE '$xx'" ; fi
2536    done
2537    
2538  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2539      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2540  fi  fi
2541  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2542  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 816  echo "#    $MACHINE" >> $MAKEFILE Line 2544  echo "#    $MACHINE" >> $MAKEFILE
2544  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2545  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2546  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2547  echo "#    $0 $@" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2548  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2549  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2550    
2551    EXE_AD=$EXECUTABLE"_ad"
2552    EXE_FTL=$EXECUTABLE"_ftl"
2553    EXE_SVD=$EXECUTABLE"_svd"
2554    
2555  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2556  #  #
2557    # OPTFILE="$OPTFILE"
2558    #
2559  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2560  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2561  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 840  cat >>$MAKEFILE <<EOF Line 2575  cat >>$MAKEFILE <<EOF
2575  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2576    
2577  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2578  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2579  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2580  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2581  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2582  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2583  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2584    
2585    #eh3  new defines for the adjoint work
2586    AUTODIFF    = ${ROOTDIR}/pkg/autodiff
2587    EXE_AD      = ${EXE_AD}
2588    EXE_FTL     = ${EXE_FTL}
2589    EXE_SVD     = ${EXE_SVD}
2590    
2591    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2592    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2593    
2594    # These files are created by Makefile
2595    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2596  EOF  EOF
2597    
2598  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2599        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2600    else
2601        echo "EMBEDDED_FILES = " >>$MAKEFILE
2602    fi
2603    
2604  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2605  # Unix ln (link)  # Unix ln (link)
2606  LN = ${LN}  LN = ${LN}
# Line 862  MAKEDEPEND = ${MAKEDEPEND} Line 2612  MAKEDEPEND = ${MAKEDEPEND}
2612  KPP = ${KPP}  KPP = ${KPP}
2613  # Fortran compiler  # Fortran compiler
2614  FC = ${FC}  FC = ${FC}
2615    # Fortran compiler
2616    F90C = ${F90C}
2617    # C compiler
2618    CC = ${CC}
2619  # Link editor  # Link editor
2620  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2621    
2622  # Defines for CPP  # Defines for CPP
2623  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 873  INCLUDES = ${INCLUDES} Line 2627  INCLUDES = ${INCLUDES}
2627  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2628  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2629  # Optim./debug for FC  # Optim./debug for FC
2630  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2631  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2632    # Optim./debug for FC
2633    F90FLAGS = ${F90FLAGS}
2634    F90OPTIM = ${F90OPTIM}
2635    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2636  # Flags for CC  # Flags for CC
2637  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2638  # Files that should not be optimized  # Files that should not be optimized
2639  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2640  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2641  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2642  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2643    # Name of the Mekfile
2644    MAKEFILE=${MAKEFILE}
2645    
2646  EOF  EOF
2647    
2648  cat srclist.inc  >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2649  cat csrclist.inc >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2650  cat hlist.inc >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2651  echo 'F77FILES =  $(SRCFILES:.F=.f)'                    >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2652  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o)' >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2653    cat ad_flow_files.tmp   >> $MAKEFILE
2654  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp  
2655    rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2656    
2657    echo >> $MAKEFILE
2658    
2659    # add definitions for preprocessed sources
2660    # and note that not all systems allow case sensitive extensions
2661    # hence the $FS and $FS90 here.
2662    # for fixed format f90 files we use ff90 or FF90 resp
2663    # but these are not expected to be the original source files
2664    
2665    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2666    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2667    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2668    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2669    echo >> $MAKEFILE
2670    echo '.SUFFIXES:' >> $MAKEFILE
2671    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2672    
2673  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2674    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c  
   
2675  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2676  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2677            @echo Creating \$@ ...
2678          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2679  depend:  depend:
2680          @make links          @make links
2681          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2682            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2683            -rm -f makedepend.out
2684    
2685    lib: libmitgcmuv.a
2686    
2687  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES)  libmitgcmuv.a: \$(OBJFILES)
2688            ar rcv libmitgcmuv.a \$(OBJFILES)
2689            ar d   libmitgcmuv.a main.o
2690    
2691  small_f: \$(F77FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2692    
2693    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2694    
2695  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2696          @printf 'running ... '          @printf 'running ... '
2697          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2698    
2699    # remove most of the files that "make" generates
2700  clean:  clean:
2701          -rm -rf *.o *.f *.p ${RMFILES} work.{pc,pcl}          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2702            -rm -rf *.o
2703            -rm -rf *.$FS *.flowdir
2704            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2705    
2706    # remove most of the files that "make" and "make depend" generate
2707  Clean:  Clean:
2708          @make clean          @make clean
2709          @make cleanlinks          @make cleanlinks
2710          -rm -f Makefile.bak          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2711            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2712            -rm -f genmake_warnings genmake_errors make.log
2713    
2714    # remove also the executable, files that "genmake2" generates (except Makefile)
2715    #         and output from a run (plus log files from testreport)
2716  CLEAN:  CLEAN:
2717          @make Clean          @make Clean
2718            -rm -f \$(EXECUTABLE) \$(EXE_AD) *.bak
2719            -rm -f $LOGFILE genmake_state genmake_*optfile
2720            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2721          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2722          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2723          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2724          -rm -f \$(EXECUTABLE)          -rm -f *.txt STD* *diagnostics.log datetime
2725            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2726            -rm -rf mnc_test_*
2727    
2728  makefile:  makefile:
2729          ${0} $@          $THIS_SCRIPT $G2ARGS
2730  cleanlinks:  cleanlinks:
2731          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2732    
2733  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are created by make
2734  .F.f:  ${PACKAGES_DOT_H}:
2735            @echo Creating \$@ ...
2736            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2737    AD_CONFIG.h:
2738            @echo Creating \$@ ...
2739            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2740    FC_NAMEMANGLE.h:
2741            @echo Creating \$@ ...
2742            echo "$FC_NAMEMANGLE" > \$@
2743    
2744    BUILD_INFO.h:
2745            @echo Creating \$@ ...
2746    EOF
2747    
2748    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2749    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2750    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2751    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2752    
2753    if test "x$EMBED_SRC" = xt ; then
2754        cat >>$MAKEFILE <<EOF
2755    
2756    decode_files.o : EMBEDDED_FILES.h
2757    
2758    ##  \$(F77_PP_SRC_FILES)
2759    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2760            @echo Creating \$@ ...
2761            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2762            -rm -f all_fF.tar.gz
2763            -gzip all_fF.tar
2764    
2765    EMBEDDED_FILES.h : all_fF.tar.gz
2766            @echo Creating \$@ ...
2767            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2768    
2769    EOF
2770    fi
2771    
2772    cat >>$MAKEFILE <<EOF
2773    
2774    # The normal chain of rules is (  .F - .$FS - .o  )
2775    
2776    ## This nullifies any default implicit rules concerning these two file types:
2777    ## %.o : %.F
2778    
2779    .F.$FS:
2780          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2781  .f.o:  .$FS.o:
2782          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2783    .F.o:
2784            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2785    .F90.$FS90:
2786            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2787    .FF90.f$FS90:
2788            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2789    .$FS90.o:
2790            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2791    .f$FS90.o:
2792            cp \$< \$(basename  \$<).f90
2793            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2794  .c.o:  .c.o:
2795          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2796    .flow.flowdir:
2797            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2798    
2799  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2800  .F.p:  .F.p:
2801          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2802  .p.f:  .p.$FS:
2803          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2804    
2805  EOF  EOF
2806    
2807    #=========================================
2808    #===  Automatic Differentiation Rules  ===
2809    #===  for TAMC/TAF  ======================
2810    
2811    if test "x$OPENAD" = x ; then
2812    
2813    cat >>$MAKEFILE <<EOF
2814    
2815    TAMC           = ${TAMC}
2816    TAF            = ${TAF}
2817    
2818    TAF_EXTRA      = ${TAF_EXTRA}
2819    TAMC_EXTRA     = ${TAMC_EXTRA}
2820    
2821    EOF
2822    
2823    ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
2824    ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
2825    ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2826    for i in $ad_vars ; do
2827        name=$i
2828        t1="t2=\$"`echo "$i"`
2829        eval $t1
2830        printf "%-20s = " $name >> $MAKEFILE
2831        echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2832    done
2833    
2834    echo "  Add the source list for AD code generation"
2835    echo >> $MAKEFILE
2836    printf "AD_FILES = " >> $MAKEFILE
2837    AD_FILES=`cat adSrcFiles.tmp`
2838    for i in $AD_FILES ; do
2839        echo    " \\" >> $MAKEFILE
2840        printf " $i" >> $MAKEFILE
2841    done
2842    echo >> $MAKEFILE
2843    rm -f adSrcFiles.tmp
2844    
2845    cat >>$MAKEFILE <<EOF
2846    
2847    # ... AD ...
2848    adall: \$(EXE_AD)
2849    adtaf: ad_taf_output.$FS
2850    adtamc: ad_tamc_output.$FS
2851    
2852    ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
2853            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2854            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2855            -rm -f ad_config.template
2856            @make \$(F77_PP_SRC_FILES)
2857            @make \$(FLOFILES)
2858            cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
2859    
2860    ad_taf_output.$FS: ad_input_code.$FS
2861            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2862            ls -l ad_input_code_ad.$FS
2863            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2864    
2865    adtafonly:
2866            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2867            ls -l ad_input_code_ad.$FS
2868            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2869    
2870    \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2871            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2872    
2873    ad_tamc_output.$FS: ad_input_code.$FS
2874            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2875            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2876    
2877    ad_tamc: ad_tamc_output.o \$(OBJFILES)
2878            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2879    
2880    adonlyfwd:
2881            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2882    
2883    adtrick:
2884            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2885    
2886    # ... FTL ...
2887    ftlall: ftl_taf
2888    ftltaf: ftl_taf_output.$FS
2889    ftltamc: ftl_tamc_output.$FS
2890    
2891    ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2892            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2893            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2894            -rm -f ftl_config.template
2895            @make \$(F77_PP_SRC_FILES)
2896            @make \$(AD_FLOW_FILES)
2897            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2898    
2899    ftl_taf_output.$FS: ftl_input_code.$FS
2900            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2901            ls -l ftl_input_code_ftl.$FS
2902            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2903    
2904    ftltafonly:
2905            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2906            ls -l ftl_input_code_ftl.$FS
2907            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2908    
2909    ftl_taf: ftl_taf_output.o \$(OBJFILES)
2910            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2911    
2912    ftl_tamc_output.$FS: ftl_input_code.$FS
2913            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2914            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2915    
2916    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2917            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2918    
2919    # ... SVD ...
2920    svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2921            @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2922            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2923    svdall: svd_touch svd_taf
2924    
2925    svd_taf: \$(OBJFILES)
2926            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2927    
2928            @echo "--->>> Only COMPILE svd code! <<<---"
2929            @echo "--->>> Assumes you previously <<<---"
2930            @echo "--->>> did make svdtaf        <<<---"
2931    
2932    svd_touch:
2933            @echo "--->>> Only COMPILE svd code! <<<---"
2934            @echo "--->>> Assumes you previously <<<---"
2935            @echo "--->>> did make svdtaf        <<<---"
2936            touch ad_taf_output.$FS ftl_taf_output.$FS
2937            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2938            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2939            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2940            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2941            -rm -f ftl_config.template
2942    
2943    EOF
2944    
2945    fi
2946    
2947    #===  for OpenAD  ========================
2948    
2949    if test "x$OPENAD" != x ; then
2950    
2951    # ============ begin OpenAD specific section ==============
2952    
2953    cat >>$MAKEFILE <<EOF
2954    
2955    # all the source files linked from the various locations:
2956    ALL_LINKED_FILES= \
2957    \$(F77_SRC_FILES) \
2958    \$(C_SRC_FILES) \
2959    \$(H_SRC_FILES) \
2960    \$(F90_SRC_FILES) \
2961    \$(SPECIAL_FILES)
2962    
2963    ifndef OPENADROOT
2964      \$(error "Error:  environment variable OPENADROOT not defined!")
2965    endif
2966    
2967    ifndef XAIFSCHEMAROOT
2968      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2969    endif
2970    
2971    ifndef XAIFBOOSTERROOT
2972      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2973    endif
2974    
2975    EOF
2976    
2977    echo "  Add the source list for common block to module conversion "
2978    echo >> $MAKEFILE
2979    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2980    for i in `cat ${OAD_CB2M_FILES}` ; do
2981      echo    " \\" >> $MAKEFILE
2982      printf " $i" >> $MAKEFILE
2983    done
2984    echo >> $MAKEFILE
2985    
2986    echo "  Add the source list for AD code generation"
2987    echo >> $MAKEFILE
2988    printf "AD_FILES = " >> $MAKEFILE
2989    for i in `cat ${OAD_CB2M_FILES}` ; do
2990      echo    " \\" >> $MAKEFILE
2991      printf " ${i}_mod.f$FS90" >> $MAKEFILE
2992    done
2993    AD_FILES=`cat adSrcFiles.tmp`
2994    for i in $AD_FILES ; do
2995      basename=${i%%.f}
2996      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
2997      if test -z "$toBeIgnored" ; then
2998        echo    " \\" >> $MAKEFILE
2999        printf " $i" >> $MAKEFILE
3000      fi
3001    done
3002    echo >> $MAKEFILE
3003    rm -f adSrcFiles.tmp
3004    
3005    cat >>$MAKEFILE <<EOF
3006    
3007    adAll: \$(EXE_AD)
3008    .PHONY: adAll
3009    
3010    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3011    
3012    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3013    
3014    .PHONY: adDepend
3015    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3016            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3017            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3018            -rm -f makedepend.out
3019    
3020    OPENAD_SUPPORT_F90_SRC_FILES = \
3021    w2f__types.F90 \
3022    OAD_active.F90 \
3023    OAD_cp.F90 \
3024    OAD_rev.F90 \
3025    OAD_tape.F90
3026    
3027    OPENAD_SUPPORT_C_SRC_FILES = \
3028    iaddr.c \
3029    timeRatio.c
3030    
3031    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3032            cat \$^ > \$@
3033    
3034    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3035            cat \$^ > \$@
3036    
3037    f95_test.out: f95_test_mods.f90 f95_test.f90
3038            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3039            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3040    
3041    # the file included below is created by the
3042    # postProcessor and its inclusion sets the
3043    # variable POSTPROCESSEDFILES
3044    # used below. Because the file is made during
3045    # make it won't be read until the second (recursive)
3046    # invocation in the rule below
3047    -include postProcess.make
3048    
3049    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)
3050    
3051    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3052    
3053    postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)
3054    ifeq (\$(MAKELEVEL),0)
3055            \$(MAKE) adAll
3056    else
3057            touch \$@
3058    endif
3059    
3060    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)
3061    ifeq (\$(MAKELEVEL),1)
3062            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3063    else
3064            touch \$@
3065    endif
3066    
3067    # makefile debug rule
3068    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3069    .PHONY: openad
3070    
3071    # create the module files
3072    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3073            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3074    
3075    # create the header files
3076    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3077            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3078    
3079    # change everybody else to use the new module files:
3080    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3081            ../OAD_support/cb2mUseModules.bash $< ${MPI}
3082    
3083    # makefile debug rule
3084    small_f: \$(CB2M_F90_PP_SRC_FILES)
3085    .PHONY: small_f
3086    
3087    ad_output.txt: \$(EXE_AD)
3088            @printf 'linking data files ... '
3089            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3090            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3091            @printf 'running ... '
3092            @./\$(EXE_AD) > \$@
3093    
3094    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3095    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3096            cat \$^ > \$@
3097    
3098    # strip all comments and blanks to reduce
3099    # the file size in order to reduce perl's memory requirements
3100    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3101            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3102    
3103    # mfef90 preprocessing
3104    # expand statement functions
3105    # expose mfef90 specific substring handling
3106    # add the w2f__types module
3107    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3108            ./mfef90 -r8 -z -F -N132 \$<
3109            mv \$<.B \$(basename \$<).B
3110            ./whirl2f -openad \$(basename \$<).B
3111            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3112    
3113    # canonicalizer
3114    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3115            ./preProcess.py --timing --r8 -H -S \$< -o \$@
3116    
3117    # F -> WHIRL
3118    # note that the canonicalized version cuts off at col 72
3119    # doing this also for string constants which is ok as long
3120    # as we are in fixed mode and cut of exactly there.
3121    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3122    # characters respectively.
3123    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3124            ./mfef90 -r8 -z -F \$<
3125            mv \$<.B \$@
3126    
3127    # WHIRL -> XAIF
3128    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3129            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3130    
3131    # XAIF -> XAIF'
3132    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3133            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3134    
3135    # XAIF' -> WHIRL'
3136    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3137            ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<
3138    
3139    # WHIRL' -> F'
3140    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3141            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3142    
3143    # insert template directives
3144    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3145            ../OAD_support/insertTemplateDir.bash \$< \$@
3146    
3147    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3148    # postprocess F'
3149    postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3150            # the target is a placeholder to signal execution of the rule
3151            touch \$@
3152            # this step also creates the file postProcess.make but we cannot
3153            # name it as the target or else make will try to remake it for
3154            # the include directive above for any rule, e.g. make clean
3155            ./postProcess.py --progress --timing --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<
3156    
3157    # setup some links
3158    %.xsd:
3159            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3160    
3161    mfef90:
3162            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3163    
3164    # link the support files:
3165    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3166            \$(LN) ../OAD_support/\$@ .
3167    
3168    whirl2xaif xaif2whirl:
3169            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3170    
3171    preProcess.py postProcess.py:
3172            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3173    
3174    whirl2f whirl2f_be:
3175            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3176    
3177    oadDriver:
3178            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3179    
3180    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)
3181    
3182    # ============ end OpenAD specific section ==============
3183    
3184    EOF
3185    
3186    fi
3187    
3188    #=========================================
3189    
3190    if test "x$EXEHOOK" != x ; then
3191        printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3192    fi
3193    
3194  echo "  Making list of \"exceptions\" that need \".p\" files"  echo "  Making list of \"exceptions\" that need \".p\" files"
3195  for i in $KPPFILES ; do  for i in $KPPFILES ; do
3196      base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`      base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`
# Line 954  for i in $KPPFILES ; do Line 3198  for i in $KPPFILES ; do
3198      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3199          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3200      fi      fi
3201      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3202  done  done
3203    
3204  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 964  for i in $NOOPTFILES ; do Line 3208  for i in $NOOPTFILES ; do
3208      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3209          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3210      fi      fi
3211      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3212      echo $'\t$(FC) $(FFLAGS) $(NOOPTFLAGS) -c $<' >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3213  done  done
3214    
3215  echo "  Add rules for links"  echo "  Add rules for links"
# Line 973  cat srclinks.tmp >> $MAKEFILE Line 3217  cat srclinks.tmp >> $MAKEFILE
3217  rm -f srclinks.tmp  rm -f srclinks.tmp
3218    
3219  echo "  Adding makedepend marker"  echo "  Adding makedepend marker"
3220  echo $'\n\n'"# DO NOT DELETE" >> $MAKEFILE  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE
3221    
3222    printf "\n===  Done  ===\n"
3223    
3224    # Create special header files
3225    $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3226    if test ! -f $PACKAGES_DOT_H ; then
3227        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3228    else
3229        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
3230        RETVAL=$?
3231        if test "x$RETVAL" = x0 ; then
3232            rm -f $PACKAGES_DOT_H".tmp"
3233        else
3234            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
3235            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3236        fi
3237    fi
3238    if test ! -f AD_CONFIG.h ; then
3239        $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
3240    fi
3241    
3242  echo $'\n'"===  Done  ==="  #  Write the "state" for future records
3243    if test "x$DUMPSTATE" = xt ; then
3244        printf "" > genmake_state
3245        for i in $gm_state ; do
3246            t1="t2=\$$i"
3247            eval $t1
3248            echo "$i='$t2'" >> genmake_state
3249        done
3250    fi

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