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revision 1.213 by jmc, Fri Nov 5 16:28:59 2010 UTC revision 1.218 by jmc, Sun Dec 26 01:04:45 2010 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -[no]ieee | --[no]ieee
100              Do or don't use IEEE numerics.  Note that this option
101              *only* works if it is supported by the OPTFILE that
102              is being used.
103    
104        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
105              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
106              *only* works if CPP_EEOPTIONS.h allows this.
107    
108        -ignoretime | -ignore_time | --ignoretime | --ignore_time
109              Ignore all the "wall clock" routines entirely.  This will
110              not in any way hurt the model results -- it simply means
111              that the code that checks how long the model spends in
112              various routines will give junk values.
113    
114        -ts | --ts
115              Produce timing information per timestep
116        -papis | --papis
117              Produce summary MFlop/s (and IPC) with PAPI per timestep
118        -pcls | --pcls
119              Produce summary MFlop/s etc. with PCL per timestep
120        -foolad | --foolad
121              Fool the AD code generator
122        -papi | --papi
123              Performance analysis with PAPI
124        -pcl | --pcl
125              Performance analysis with PCL
126        -hpmt | --hpmt
127              Performance analysis with the HPM Toolkit
128    
129        -gsl | --gsl
130              Use GSL to control floating point rounding and precision
131        -devel | --devel
132              Add additional warning and debugging flags for development
133    
134        -mpi | --mpi
135              Include MPI header files and link to MPI libraries
136        -mpi=PATH | --mpi=PATH
137              Include MPI header files and link to MPI libraries using MPI_ROOT
138              set to PATH. i.e. Include files from \$PATH/include, link to libraries
139              from \$PATH/lib and use binaries from \$PATH/bin.
140    
141        -omp | --omp
142              Activate OpenMP code + use Compiler option OMPFLAG
143        -omp=OMPFLAG | --omp=OMPFLAG
144              Activate OpenMP code + use Compiler option OMPFLAG
145    
146        -es | --es | -embed-source | --embed-source
147              Embed a tarball containing the full source code
148              (including the Makefile, etc.) used to build the
149              executable [off by default]
150    
151        -ds | --ds
152              Report genmake internal variables status (DUMPSTATE)
153              to file "genmake_state" (for debug purpose)
154    
155      While it is most often a single word, the "NAME" variables specified
156      above can in many cases be a space-delimited string such as:
157    
158        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
159        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
160        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
161    
162      which, depending upon your shell, may need to be single-quoted.
163    
164      For more detailed genmake documentation, please see:
165    
166        http://mitgcm.org/public/devel_HOWTO/
167    
168    EOF
169    
170        exit 1
171    }
172    
173  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
174  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
175  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
# Line 164  EOF Line 326  EOF
326      return      return
327  }  }
328    
   
329  look_for_makedepend()  {  look_for_makedepend()  {
330    
331      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
# Line 185  look_for_makedepend()  { Line 346  look_for_makedepend()  {
346      #    3) locally build and use the cyrus implementation      #    3) locally build and use the cyrus implementation
347      #    4) fall back to the buggy local xmakedpend script      #    4) fall back to the buggy local xmakedpend script
348      #      #
349        echo >> $LOGFILE
350        echo "running: look_for_makedepend()" >> $LOGFILE
351        if test "x${MAKEDEPEND}" != x ; then
352            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
353            RETVAL=$?
354            if test x"$RETVAL" = x0 ; then
355                build_cyrus_makedepend
356                RETVAL=$?
357                if test "x$RETVAL" != x0 ; then
358                    echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'"
359                    MAKEDEPEND=
360                fi
361            else
362                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
363            fi
364        fi
365      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
366          which makedepend > /dev/null 2>&1          which makedepend > /dev/null 2>&1
367          RV0=$?          RV0=$?
# Line 209  EOF Line 386  EOF
386          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
387          if test "x${RV0}${RV1}" = x00 ; then          if test "x${RV0}${RV1}" = x00 ; then
388              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
389                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
390          else          else
391              echo "    a system-default makedepend was not found."              echo "    system-default makedepend not found. Try to build cyrus-makedepend"
   
392              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
393              build_cyrus_makedepend              build_cyrus_makedepend
394              RETVAL=$?              RETVAL=$?
395              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" != x0 ; then
396                    echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend"
397                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
398                    echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
399              fi              fi
             rm -f ./genmake_cy_md  
         fi  
     else  
         #  echo "MAKEDEPEND=${MAKEDEPEND}"  
         echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1  
         RETVAL=$?  
         if test x"$RETVAL" = x0 ; then  
             build_cyrus_makedepend  
400          fi          fi
401      fi      fi
402  }  }
403    
   
404  build_cyrus_makedepend()  {  build_cyrus_makedepend()  {
405        echo >> $LOGFILE
406        echo "running: build_cyrus_makedepend()" >> $LOGFILE
407      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
408      (      (
409          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
# Line 248  build_cyrus_makedepend()  { Line 420  build_cyrus_makedepend()  {
420      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
421      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
422          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
423            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
424          return 0          return 0
425      else      else
426          echo "WARNING: unable to build cyrus-imapd-makedepend"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
427          return 1          return 1
428      fi      fi
429  }  }
430    
   
431  build_embed_encode()  build_embed_encode()
432  {  {
433      printf "  building the embed-encode utility...  "      printf "  building the embed-encode utility...  "
# Line 289  build_embed_encode() Line 461  build_embed_encode()
461      DEFINES="$DEFINES -DHAVE_EMBED_SRC"      DEFINES="$DEFINES -DHAVE_EMBED_SRC"
462  }  }
463    
   
464  #  look for possible C compilers  #  look for possible C compilers
465  look_for_C_compilers() {  look_for_C_compilers() {
466      echo >> $LOGFILE      echo >> $LOGFILE
# Line 338  EOF Line 509  EOF
509  # Guess possible config options for this host  # Guess possible config options for this host
510  find_possible_optfile()  {  find_possible_optfile()  {
511    
512        echo >> $LOGFILE
513        echo "running: find_possible_optfile()" >> $LOGFILE
514      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
515      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
516      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
# Line 347  find_possible_optfile()  { Line 520  find_possible_optfile()  {
520      PLATFORM=$tmp3      PLATFORM=$tmp3
521      echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32      echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
522      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
523      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
   
 #    echo "test" > test  
 #    ln -s ./test link  
 #    RETVAL=$?  
 #    if test "x${RETVAL}" = x0 ; then  
 #       LN="ln -s"  
 #    else  
 #       echo "Error: \"ln -s\" does not appear to work on this system!"  
 #       echo "  For help, please contact <MITgcm-support@mitgcm.org>."  
 #       exit 1  
 #    fi  
 #    rm -f test link  
 #  
 #    if test "x$CPP" = x ; then  
 #       CPP="cpp -traditional -P"  
 #    fi  
 #  
 #    look_for_makedepend  
 #  
 #    look_for_C_compilers  
524    
525      #================================================================      #================================================================
526      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
527      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"      echo "  look for possible FORTRAN compilers" >> $LOGFILE
528        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
529      p_FC=      p_FC=
530      for c in $tmp ; do      rm -f ./genmake_hello.f
531          rm -f ./hello.f ./hello      cat >> genmake_hello.f <<EOF
         cat >> hello.f <<EOF  
532        program hello        program hello
533        do i=1,3        do i=1,3
534          print *, 'hello world : ', i          print *, 'hello world : ', i
535        enddo        enddo
536        end        end
537  EOF  EOF
538          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
539            COMM="$f -o genmake_hello genmake_hello.f"
540            echo $COMM >> $LOGFILE
541            $COMM >> $LOGFILE 2>&1
542          RETVAL=$?          RETVAL=$?
543          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
544              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
545                p_FC="$p_FC $f"
546          fi          fi
547      done      done
548      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
549      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
550          cat 1>&2 <<EOF          cat 1>&2 <<EOF
551    
# Line 401  Error: No Fortran compilers were found i Line 558  Error: No Fortran compilers were found i
558  EOF  EOF
559          exit 1          exit 1
560      else      else
561          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
562      fi      fi
563    
564      #  Use the first of the compilers found in the current PATH      #  Use the first of the compilers found in the current PATH
# Line 411  EOF Line 567  EOF
567          for i in $p_FC ; do          for i in $p_FC ; do
568              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
569              if test -r $OPTFILE ; then              if test -r $OPTFILE ; then
570                  echo "  Setting OPTFILE to: "$OPTFILE                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
571                  break                  break
572              fi              fi
573          done          done
# Line 468  EOF Line 624  EOF
624  #       fi  #       fi
625  #       rm -f test.f out  #       rm -f test.f out
626  #     fi  #     fi
   
627  }  }
628    
629  #  Parse the package dependency information  #  Parse the package dependency information
# Line 486  get_pdepend_list()  { Line 641  get_pdepend_list()  {
641      fi      fi
642      . ./.pd_tmp      . ./.pd_tmp
643      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME  
       -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME  
           Use "NAME" as the adoptfile.  By default, the file at  
           "tools/adjoint_options/adjoint_default" will be used.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pgroups NAME | --pgroups NAME  
       -pgroups=NAME | --pgroups=NAME  
           Get the package groups information from "NAME".  
   
     -bash NAME  
           Explicitly specify the Bourne or BASH shell to use  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -cc NAME | --cc NAME | -cc=NAME | --cc=NAME  
           Use "NAME" as the C compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as gcc, c89, cc, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4  
           Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)  
           *only* works if CPP_EEOPTIONS.h allows this.  
   
     -ignoretime | -ignore_time | --ignoretime | --ignore_time  
           Ignore all the "wall clock" routines entirely.  This will  
           not in any way hurt the model results -- it simply means  
           that the code that checks how long the model spends in  
           various routines will give junk values.  
   
     -ts | --ts  
           Produce timing information per timestep  
     -papis | --papis  
           Produce summary MFlop/s (and IPC) with PAPI per timestep  
     -pcls | --pcls  
           Produce summary MFlop/s etc. with PCL per timestep  
     -foolad | --foolad  
           Fool the AD code generator  
     -papi | --papi  
           Performance analysis with PAPI  
     -pcl | --pcl  
           Performance analysis with PCL  
     -hpmt | --hpmt  
           Performance analysis with the HPM Toolkit  
   
     -gsl | --gsl  
           Use GSL to control floating point rounding and precision  
     -devel | --devel  
           Add additional warning and debugging flags for development  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from \$PATH/include, link to libraries  
           from \$PATH/lib and use binaries from \$PATH/bin.  
   
     -omp | --omp  
           Activate OpenMP code + use Compiler option OMPFLAG  
     -omp=OMPFLAG | --omp=OMPFLAG  
           Activate OpenMP code + use Compiler option OMPFLAG  
   
     -es | --es | -embed-source | --embed-source  
           Embed a tarball containing the full source code  
           (including the Makefile, etc.) used to build the  
           executable [off by default]  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/public/devel_HOWTO/  
   
 EOF  
   
     exit 1  
644  }  }
645    
646  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
# Line 661  get_fortran_c_namemangling()  { Line 657  get_fortran_c_namemangling()  {
657      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
658  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
659  EOF  EOF
 #   $MAKE genmake_test.o >> $LOGFILE 2>&1  
660      COMM="$CC $CFLAGS -c genmake_test.c"      COMM="$CC $CFLAGS -c genmake_test.c"
661      echo ' '$COMM >> $LOGFILE      echo ' '$COMM >> $LOGFILE
662      $COMM >> $LOGFILE 2>&1      $COMM >> $LOGFILE 2>&1
# Line 746  EOF Line 741  EOF
741      echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE      echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
742  }  }
743    
   
744  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
745      echo >> $LOGFILE      echo >> $LOGFILE
746      echo "running: check_HAVE_CLOC()" >> $LOGFILE      echo "running: check_HAVE_CLOC()" >> $LOGFILE
# Line 792  EOF Line 786  EOF
786      echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE      echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
787  }  }
788    
   
789  check_HAVE_SIGREG()  {  check_HAVE_SIGREG()  {
790      if test ! "x$HAVE_SIGREG" = x ; then      if test ! "x$HAVE_SIGREG" = x ; then
791          return          return
# Line 855  EOF Line 848  EOF
848      echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE      echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
849  }  }
850    
   
851  check_HAVE_SETRLSTK()  {  check_HAVE_SETRLSTK()  {
852      if test "x$HAVE_SETRLSTK" = xt ; then      if test "x$HAVE_SETRLSTK" = xt ; then
853          DEFINES="$DEFINES -DHAVE_SETRLSTK"          DEFINES="$DEFINES -DHAVE_SETRLSTK"
# Line 904  EOF Line 896  EOF
896      echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE      echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
897  }  }
898    
   
899  check_HAVE_STAT()  {  check_HAVE_STAT()  {
900      echo >> $LOGFILE      echo >> $LOGFILE
901      echo "running: check_HAVE_STAT()" >> $LOGFILE      echo "running: check_HAVE_STAT()" >> $LOGFILE
# Line 952  EOF Line 943  EOF
943      echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE      echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
944  }  }
945    
   
946  check_netcdf_libs()  {  check_netcdf_libs()  {
947      if test ! "x$SKIP_NETCDF_CHECK" = x ; then      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
948          return          return
# Line 1046  EOF Line 1036  EOF
1036  }  }
1037    
1038    
   
1039  ###############################################################################  ###############################################################################
1040  #   Sequential part of script starts here  #   Sequential part of script starts here
1041  ###############################################################################  ###############################################################################
# Line 1078  FOPTIM= Line 1067  FOPTIM=
1067  FEXTRAFLAGS=  FEXTRAFLAGS=
1068  USE_EXTENDED_SRC=  USE_EXTENDED_SRC=
1069  EXTENDED_SRC_FLAG=  EXTENDED_SRC_FLAG=
1070    GET_FC_VERSION=
1071  CFLAGS=  CFLAGS=
1072  KFLAGS1=  KFLAGS1=
1073  KFLAGS2=  KFLAGS2=
# Line 1157  TAMC_EXTRA= Line 1147  TAMC_EXTRA=
1147    
1148  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1149  gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS MAKEFILE MAKEDEPEND PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS MAKEFILE MAKEDEPEND PLATFORM ROOTDIR MODS DISABLE ENABLE"
1150  gm_s2="FC IEEE USE_R4 TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"  gm_s2="FC CC IEEE USE_R4 TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"
1151    
1152  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1153  gm_s3="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"  gm_s3="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
# Line 1395  for ac_option in "$@" ; do Line 1385  for ac_option in "$@" ; do
1385    
1386  done  done
1387    
   
1388  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1389      echo      echo
1390      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
# Line 1416  if test "x${ROOTDIR}" = x ; then Line 1405  if test "x${ROOTDIR}" = x ; then
1405          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1406              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1407                  ROOTDIR=$d                  ROOTDIR=$d
1408                  printf "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1409                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1410                  break                  break
1411              fi              fi
1412          done          done
# Line 1524  Error: no Fortran compiler: please speci Line 1513  Error: no Fortran compiler: please speci
1513  EOF  EOF
1514      exit 1      exit 1
1515  fi  fi
1516    if test "x$GET_FC_VERSION" != x ; then
1517      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1518      $FC $GET_FC_VERSION >> $LOGFILE 2>&1
1519      echo "<-- compiler version ----" >> $LOGFILE
1520    fi
1521    
1522  if test "x$CC" = x ; then  if test "x$CC" = x ; then
1523      look_for_C_compilers      look_for_C_compilers
 #   CC=cc  
 #     cat <<EOF 1>&2  
 # Error: no C compiler: please specify using one of the following:  
 #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"  
 #   2) the "-cc=XXX" command-line option  
 #   3) the "./genmake_local" file  
 # EOF  
 #     exit 1  
1524  fi  fi
1525    
1526  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
# Line 1821  if test "x$EMBED_SRC" = xt ; then Line 1807  if test "x$EMBED_SRC" = xt ; then
1807      ENABLE="$ENABLE embed_files"      ENABLE="$ENABLE embed_files"
1808  fi  fi
1809    
   
1810  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1811  printf "  Adding MODS directories: "  printf "  Adding MODS directories: "
1812  for d in $MODS ; do  for d in $MODS ; do
# Line 2725  clean: Line 2710  clean:
2710  Clean:  Clean:
2711          @make clean          @make clean
2712          @make cleanlinks          @make cleanlinks
2713          -rm -f \$(SPECIAL_FILES) f90mkdepend.log          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2714          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2715          -rm -f genmake_warnings genmake_errors make.log          -rm -f genmake_warnings genmake_errors make.log
2716    
# Line 2733  Clean: Line 2718  Clean:
2718  #         and output from a run (plus log files from testreport)  #         and output from a run (plus log files from testreport)
2719  CLEAN:  CLEAN:
2720          @make Clean          @make Clean
2721          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.bak $MAKEFILE.old          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.bak
2722          -rm -f $LOGFILE genmake_state genmake_*optfile genmake.tr_log make.tr_log          -rm -f $LOGFILE genmake_state genmake_*optfile genmake.tr_log make.tr_log
2723          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2724          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
# Line 2797  cat >>$MAKEFILE <<EOF Line 2782  cat >>$MAKEFILE <<EOF
2782          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2783  .$FS.o:  .$FS.o:
2784          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2785    .F.o:
2786            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2787  .F90.$FS90:  .F90.$FS90:
2788          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2789  .FF90.f$FS90:  .FF90.f$FS90:
# Line 2931  ftl_tamc_output.$FS: ftl_input_code.$FS Line 2918  ftl_tamc_output.$FS: ftl_input_code.$FS
2918  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2919          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2920    
   
2921  # ... SVD ...  # ... SVD ...
2922  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2923          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
# Line 3255  if test ! -f AD_CONFIG.h ; then Line 3241  if test ! -f AD_CONFIG.h ; then
3241      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
3242  fi  fi
3243    
   
3244  #  Write the "state" for future records  #  Write the "state" for future records
3245  if test "x$DUMPSTATE" = xt ; then  if test "x$DUMPSTATE" = xt ; then
3246      printf "" > genmake_state      printf "" > genmake_state

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