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revision 1.216 by jmc, Mon Dec 13 22:07:20 2010 UTC revision 1.242 by heimbach, Thu Sep 20 23:12:47 2012 UTC
# Line 17  Usage: "$0" [OPTIONS] Line 17  Usage: "$0" [OPTIONS]
17    where [OPTIONS] can be:    where [OPTIONS] can be:
18    
19      -help | --help | -h | --h      -help | --help | -h | --h
20            Print this help message and exit.            Print this help message and exit.
21    
22      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24            Use "NAME" as the adoptfile.  By default, the file at            Use "NAME" as the adoptfile.  By default, the file at
25            "tools/adjoint_options/adjoint_default" will be used.            "tools/adjoint_options/adjoint_default" will be used.
26    
27      -nooptfile | --nooptfile      -nooptfile | --nooptfile
28        -optfile NAME | --optfile NAME | -of NAME | --of NAME        -optfile NAME | --optfile NAME | -of NAME | --of NAME
29        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30            Use "NAME" as the optfile.  By default, an attempt will be            Use "NAME" as the optfile.  By default, an attempt will be
31            made to find an appropriate "standard" optfile in the            made to find an appropriate "standard" optfile in the
32            tools/build_options/ directory.            tools/build_options/ directory.
33    
34      -pdepend NAME | --pdepend NAME      -pdepend NAME | --pdepend NAME
35        -pdepend=NAME | --pdepend=NAME        -pdepend=NAME | --pdepend=NAME
36            Get package dependency information from "NAME".            Get package dependency information from "NAME".
37    
38      -pgroups NAME | --pgroups NAME      -pgroups NAME | --pgroups NAME
39        -pgroups=NAME | --pgroups=NAME        -pgroups=NAME | --pgroups=NAME
40            Get the package groups information from "NAME".            Get the package groups information from "NAME".
41    
42      -bash NAME      -bash NAME
43            Explicitly specify the Bourne or BASH shell to use            Explicitly specify the Bourne or BASH shell to use
44    
45      -make NAME | -m NAME      -make NAME | -m NAME
46        --make=NAME | -m=NAME        --make=NAME | -m=NAME
47            Use "NAME" for the MAKE program. The default is "make" but            Use "NAME" for the MAKE program. The default is "make" but
48            many platforms, "gmake" is the preferred choice.            many platforms, "gmake" is the preferred choice.
49    
50      -makefile NAME | -mf NAME      -makefile NAME | -mf NAME
51        --makefile=NAME | -mf=NAME        --makefile=NAME | -mf=NAME
52            Call the makefile "NAME".  The default is "Makefile".            Call the makefile "NAME".  The default is "Makefile".
53    
54      -makedepend NAME | -md NAME      -makedepend NAME | -md NAME
55        --makedepend=NAME | -md=NAME        --makedepend=NAME | -md=NAME
56            Use "NAME" for the MAKEDEPEND program.            Use "NAME" for the MAKEDEPEND program.
57    
58      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60            Specify the location of the MITgcm ROOTDIR as "NAME".            Specify the location of the MITgcm ROOTDIR as "NAME".
61            By default, genamke will try to find the location by            By default, genamke will try to find the location by
62            looking in parent directories (up to the 5th parent).            looking in parent directories (up to the 5th parent).
63    
64      -mods NAME | --mods NAME | -mo NAME | --mo NAME      -mods NAME | --mods NAME | -mo NAME | --mo NAME
65        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66            Here, "NAME" specifies a list of directories that are            Here, "NAME" specifies a list of directories that are
67            used for additional source code.  Files found in the            used for additional source code.  Files found in the
68            "mods list" are given preference over files of the same            "mods list" are given preference over files of the same
69            name found elsewhere.            name found elsewhere.
70    
71      -disable NAME | --disable NAME      -disable NAME | --disable NAME
72        -disable=NAME | --disable=NAME        -disable=NAME | --disable=NAME
73            Here "NAME" specifies a list of packages that we don't            Here "NAME" specifies a list of packages that we don't
74            want to use.  If this violates package dependencies,            want to use.  If this violates package dependencies,
75            genamke will exit with an error message.            genamke will exit with an error message.
76    
77      -enable NAME | --enable NAME      -enable NAME | --enable NAME
78        -enable=NAME | --enable=NAME        -enable=NAME | --enable=NAME
79            Here "NAME" specifies a list of packages that we wish            Here "NAME" specifies a list of packages that we wish
80            to specifically enable.  If this violates package            to specifically enable.  If this violates package
81            dependencies, genamke will exit with an error message.            dependencies, genamke will exit with an error message.
82    
83      -standarddirs NAME | --standarddirs NAME      -standarddirs NAME | --standarddirs NAME
84        -standarddirs=NAME | --standarddirs=NAME        -standarddirs=NAME | --standarddirs=NAME
85            Here, "NAME" specifies a list of directories to be            Here, "NAME" specifies a list of directories to be
86            used as the "standard" code.            used as the "standard" code.
87    
88      -fortran NAME | --fortran NAME | -fc NAME | --fc NAME      -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89        -fc=NAME | --fc=NAME        -fc=NAME | --fc=NAME
90            Use "NAME" as the fortran compiler.  By default, genmake            Use "NAME" as the fortran compiler.  By default, genmake
91            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
92            "usual suspects" such as g77, f77, etc.            "usual suspects" such as g77, f77, etc.
93    
94      -cc NAME | --cc NAME | -cc=NAME | --cc=NAME      -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95            Use "NAME" as the C compiler.  By default, genmake            Use "NAME" as the C compiler.  By default, genmake
96            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
97            "usual suspects" such as gcc, c89, cc, etc.            "usual suspects" such as gcc, c89, cc, etc.
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
98    
99      -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4      -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100            Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)            Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101            *only* works if CPP_EEOPTIONS.h allows this.            *only* works if CPP_EEOPTIONS.h allows this.
102    
103      -ignoretime | -ignore_time | --ignoretime | --ignore_time      -ignoretime | -ignore_time | --ignoretime | --ignore_time
104            Ignore all the "wall clock" routines entirely.  This will            Ignore all the "wall clock" routines entirely.  This will
105            not in any way hurt the model results -- it simply means            not in any way hurt the model results -- it simply means
106            that the code that checks how long the model spends in            that the code that checks how long the model spends in
107            various routines will give junk values.            various routines will give junk values.
108    
109      -ts | --ts      -ts | --ts
110            Produce timing information per timestep            Produce timing information per timestep
111      -papis | --papis      -papis | --papis
112            Produce summary MFlop/s (and IPC) with PAPI per timestep            Produce summary MFlop/s (and IPC) with PAPI per timestep
113      -pcls | --pcls      -pcls | --pcls
114            Produce summary MFlop/s etc. with PCL per timestep            Produce summary MFlop/s etc. with PCL per timestep
115      -foolad | --foolad      -foolad | --foolad
116            Fool the AD code generator            Fool the AD code generator
117      -papi | --papi      -papi | --papi
118            Performance analysis with PAPI            Performance analysis with PAPI
119      -pcl | --pcl      -pcl | --pcl
120            Performance analysis with PCL            Performance analysis with PCL
121      -hpmt | --hpmt      -hpmt | --hpmt
122            Performance analysis with the HPM Toolkit            Performance analysis with the HPM Toolkit
123    
124      -gsl | --gsl      -ieee | --ieee
125            Use GSL to control floating point rounding and precision            use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127      -devel | --devel      -devel | --devel
128            Add additional warning and debugging flags for development            Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133      -mpi | --mpi      -mpi | --mpi
134            Include MPI header files and link to MPI libraries            Include MPI header files and link to MPI libraries
135      -mpi=PATH | --mpi=PATH      -mpi=PATH | --mpi=PATH
136            Include MPI header files and link to MPI libraries using MPI_ROOT            Include MPI header files and link to MPI libraries using MPI_ROOT
137            set to PATH. i.e. Include files from \$PATH/include, link to libraries            set to PATH. i.e. Include files from \$PATH/include, link to libraries
138            from \$PATH/lib and use binaries from \$PATH/bin.            from \$PATH/lib and use binaries from \$PATH/bin.
139    
140      -omp | --omp      -omp | --omp
141            Activate OpenMP code + use Compiler option OMPFLAG            Activate OpenMP code + use Compiler option OMPFLAG
142      -omp=OMPFLAG | --omp=OMPFLAG      -omp=OMPFLAG | --omp=OMPFLAG
143            Activate OpenMP code + use Compiler option OMPFLAG            Activate OpenMP code + use Compiler option OMPFLAG
144    
145      -es | --es | -embed-source | --embed-source      -es | --es | -embed-source | --embed-source
146            Embed a tarball containing the full source code            Embed a tarball containing the full source code
147            (including the Makefile, etc.) used to build the            (including the Makefile, etc.) used to build the
148            executable [off by default]            executable [off by default]
149    
150      -ds | --ds      -ds | --ds
151            Report genmake internal variables status (DUMPSTATE)            Report genmake internal variables status (DUMPSTATE)
152            to file "genmake_state" (for debug purpose)            to file "genmake_state" (for debug purpose)
153    
154    While it is most often a single word, the "NAME" variables specified    While it is most often a single word, the "NAME" variables specified
155    above can in many cases be a space-delimited string such as:    above can in many cases be a space-delimited string such as:
# Line 175  EOF Line 174  EOF
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
175      cpp_options=$1      cpp_options=$1
176      pkg=$2      pkg=$2
177      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
178      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
179      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
180      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"  
181  }  }
182    
183  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
184  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
185  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
186      cpp_options=$1      cpp_options=$1
187      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
188      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"  
189  }  }
190    
191  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 204  test_for_mpi_in_cpp_eeoptions() { Line 193  test_for_mpi_in_cpp_eeoptions() {
193  test_for_string_in_file() {  test_for_string_in_file() {
194      file=$1      file=$1
195      strng=$2      strng=$2
196      grep -i "$strng" $file > /dev/null 2>&1      grep "$strng" $file > /dev/null 2>&1
197      RETVAL=$?      RETVAL=$?
198      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
199          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
200          grep -i "$strng" $file          grep -i "$strng" $file
201          exit 99          exit 99
202      fi      fi
203      return 0      return 0
# Line 298  EOF Line 287  EOF
287  .F.$tfs:  .F.$tfs:
288          $LN \$< \$@          $LN \$< \$@
289  EOF  EOF
290      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
291      RETVAL=$?      RETVAL=$?
292      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
293          if test "x$FS" = x ; then          if test "x$FS" = x ; then
# Line 306  EOF Line 295  EOF
295              FS90='fr9'              FS90='fr9'
296              check_for_broken_Ff              check_for_broken_Ff
297          else          else
298              cat <<EOF 2>&1              echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
299  ERROR: Your file system cannot distinguish between *.F and *.f files              echo "       see simple makefile: '$MAKEFILE' (left here)"
300    (fails the "make/ln" test) and this program cannot find a suitable              echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
301    replacement extension.  Please try a different build environment or              echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
302    contact the <MITgcm-support@mitgcm.org> list for help.              echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
303                echo ""
 EOF  
304              exit -1              exit -1
305              return              return
306          fi          fi
# Line 346  look_for_makedepend()  { Line 334  look_for_makedepend()  {
334      #    3) locally build and use the cyrus implementation      #    3) locally build and use the cyrus implementation
335      #    4) fall back to the buggy local xmakedpend script      #    4) fall back to the buggy local xmakedpend script
336      #      #
337        echo >> $LOGFILE
338        echo "running: look_for_makedepend()" >> $LOGFILE
339        if test "x${MAKEDEPEND}" != x ; then
340            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
341            RETVAL=$?
342            if test x"$RETVAL" = x0 ; then
343                build_cyrus_makedepend
344                RETVAL=$?
345                if test "x$RETVAL" != x0 ; then
346                    echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'"
347                    MAKEDEPEND=
348                fi
349            else
350                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
351                RETVAL=$?
352                if test "x$RETVAL" = x0 ; then
353                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
354                fi
355                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
356            fi
357        fi
358      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
359          which makedepend > /dev/null 2>&1          which makedepend > /dev/null 2>&1
360          RV0=$?          RV0=$?
# Line 364  EOF Line 373  EOF
373        stop        stop
374        end        end
375  EOF  EOF
376          makedepend genmake_tc.f > /dev/null 2>&1          makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
377          RV1=$?          RV1=$?
378          test -f $MAKEFILE  &&  rm -f $MAKEFILE          test -f $MAKEFILE  &&  rm -f $MAKEFILE
379          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
380          if test "x${RV0}${RV1}" = x00 ; then          if test "x${RV0}${RV1}" = x00 ; then
381              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
382                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
383          else          else
384              echo "    a system-default makedepend was not found."              echo "    system-default makedepend not found. Try to build cyrus-makedepend"
385              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
386              build_cyrus_makedepend              build_cyrus_makedepend
387              RETVAL=$?              RETVAL=$?
388              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" != x0 ; then
389                    echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend"
390                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
391                    echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392              fi              fi
             rm -f ./genmake_cy_md  
         fi  
     else  
         #  echo "MAKEDEPEND=${MAKEDEPEND}"  
         echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1  
         RETVAL=$?  
         if test x"$RETVAL" = x0 ; then  
             build_cyrus_makedepend  
393          fi          fi
394      fi      fi
395  }  }
396    
397  build_cyrus_makedepend()  {  build_cyrus_makedepend()  {
398        echo >> $LOGFILE
399        echo "running: build_cyrus_makedepend()" >> $LOGFILE
400      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
401      (      (
402          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
403              &&  ./configure > /dev/null 2>&1  \              &&  ./configure > /dev/null 2>&1  \
404              &&  make > /dev/null 2>&1              &&  $MAKE > /dev/null 2>&1
405          if test -x ./makedepend.exe ; then          if test -x ./makedepend.exe ; then
406              $LN ./makedepend.exe ./makedepend              $LN ./makedepend.exe ./makedepend
407          fi          fi
# Line 407  build_cyrus_makedepend()  { Line 413  build_cyrus_makedepend()  {
413      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
414      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
415          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
416            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
417          return 0          return 0
418      else      else
419          echo "WARNING: unable to build cyrus-imapd-makedepend"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
420          return 1          return 1
421      fi      fi
422  }  }
# Line 418  build_embed_encode() Line 425  build_embed_encode()
425  {  {
426      printf "  building the embed-encode utility...  "      printf "  building the embed-encode utility...  "
427      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
428          if test ! -d "$ROOTDIR/tools/embed_encode" ; then          if test ! -d "$ROOTDIR/tools/embed_encode" ; then
429              echo              echo
430              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
431              echo              echo
432              EMBED_SRC=f              EMBED_SRC=f
433              return 1              return 1
434          fi          fi
435          clist="cc gcc c89 $CC"          clist="cc gcc c89 $CC"
436          for ic in $clist ; do          for ic in $clist ; do
437              comm="$ic -o encode_files encode_files.c"              comm="$ic -o encode_files encode_files.c"
# Line 432  build_embed_encode() Line 439  build_embed_encode()
439              RETVAL=$?              RETVAL=$?
440              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
441                  echo "OK"                  echo "OK"
                 DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
442                  return 0                  return 0
443              fi              fi
444          done          done
# Line 444  build_embed_encode() Line 450  build_embed_encode()
450          return 1          return 1
451      fi      fi
452      echo "OK"      echo "OK"
     DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
453  }  }
454    
455  #  look for possible C compilers  #  look for possible C compilers
# Line 562  EOF Line 567  EOF
567      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
568          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
569          if test ! -r $OPTFILE ; then          if test ! -r $OPTFILE ; then
570               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
571          fi          fi
572      fi      fi
573    
574      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
# Line 581  Error: No options file was found in:  $R Line 586  Error: No options file was found in:  $R
586  EOF  EOF
587          exit 1          exit 1
588      fi      fi
   
 #     # look for possible MPI libraries  
 #     mpi_libs=  
 #     mpi_fort=`which mpif77 2>/dev/null`  
 #     RETVAL=$?  
 #     if test "x${RETVAL}" = x0 ; then  
 #       cat >>test.f <<EOF  
 #       PROGRAM HELLO  
 #       DO 10, I=1,10  
 #       PRINT *,'Hello World'  
 #    10 CONTINUE  
 #       STOP  
 #       END  
 # EOF  
 #       eval "$mpi_fort -showme test.f > out"  
 #       RETVAL=$?  
 #       if test "x${RETVAL}" = x0 ; then  
 #           a=`cat out`  
 #           for i in $a ; do  
 #               case $i in  
 #                   -*)  
 #                       mpi_libs="$mpi_libs $i" ;;  
 #               esac  
 #           done  
 #           echo "The MPI libs appear to be:"  
 #           echo "  "$mpi_libs  
 #       fi  
 #       rm -f test.f out  
 #     fi  
589  }  }
590    
591  #  Parse the package dependency information  #  Parse the package dependency information
# Line 634  get_fortran_c_namemangling()  { Line 610  get_fortran_c_namemangling()  {
610    
611      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
612      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
613          return 0          return 0
614      fi      fi
615      echo " running: get_fortran_c_namemangling()" >> $LOGFILE      echo " running: get_fortran_c_namemangling()" >> $LOGFILE
616    
# Line 766  EOF Line 742  EOF
742      RETVAL=$?      RETVAL=$?
743      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
744          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
745      fi      fi
746      rm -f genmake_tc*      rm -f genmake_tc*
747      echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE      echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
# Line 828  EOF Line 803  EOF
803      RETVAL=$?      RETVAL=$?
804      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
805          HAVE_SIGREG=t          HAVE_SIGREG=t
         DEFINES="$DEFINES -DHAVE_SIGREG"  
806      fi      fi
807      rm -f genmake_tc*      rm -f genmake_tc*
808      echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE      echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
809  }  }
810    
811  check_HAVE_SETRLSTK()  {  check_HAVE_SETRLSTK()  {
     if test "x$HAVE_SETRLSTK" = xt ; then  
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
         return  
     fi    
812      if test ! "x$HAVE_SETRLSTK" = x ; then      if test ! "x$HAVE_SETRLSTK" = x ; then
813          return          return
814      fi      fi
# Line 876  EOF Line 846  EOF
846      RETVAL=$?      RETVAL=$?
847      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
848          HAVE_SETRLSTK=t          HAVE_SETRLSTK=t
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
849      fi      fi
850      rm -f genmake_tc*      rm -f genmake_tc*
851      echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE      echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
# Line 923  EOF Line 892  EOF
892      RETVAL=$?      RETVAL=$?
893      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
894          HAVE_STAT=t          HAVE_STAT=t
         DEFINES="$DEFINES -DHAVE_STAT"  
895      fi      fi
896      rm -f genmake_tc*      rm -f genmake_tc*
897      echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE      echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
# Line 1021  EOF Line 989  EOF
989      echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE      echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
990  }  }
991    
992    check_lapack_libs()  {
993        if test ! "x$SKIP_LAPACK_CHECK" = x ; then
994            return
995        fi
996        echo >> $LOGFILE
997        echo "running: check_lapack_libs()" >> $LOGFILE
998        cat <<EOF > genmake_tla.F
999          program fgenla
1000          integer info
1001          integer ipiv( 2 )
1002          double precision ab( 4, 2 ), b( 2 )
1003          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1004          data b / 1., 1. /
1005          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1006          IF (info .NE. 0) write(*,*) 'Error:', info
1007          write(*,*) b
1008          end
1009    EOF
1010        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1011        cat genmake_tla.F >> genmake_tla.log
1012        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1013        RET_CPP=f
1014        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1015        echo "$COMM" >> genmake_tla.log
1016        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1017        if test "x$RET_CPP" = xf ; then
1018            echo "  WARNING: CPP failed to pre-process the lapack test." \
1019                >> genmake_tla.log
1020            echo "    Please check that \$INCLUDES is properly set." \
1021                >> genmake_tla.log
1022        fi
1023        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1024        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1025        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1026            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1027        RET_COMPILE=$?
1028        cat genmake_tla.log >> $LOGFILE
1029    
1030        # test program execution not always possible (see check_netcdf_libs)
1031        #
1032        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1033        #RETVAL=$?
1034        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1035    
1036        if test "x$RET_COMPILE" = x0 ; then
1037            HAVE_LAPACK=t
1038            echo "check_lapack: successful" >> $LOGFILE
1039        else
1040            # try again with "-llapack" added to the libs
1041            echo "==> try again with added '-llapack'" > genmake_tla.log
1042            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1043            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1044            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1045            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1046                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1047                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1048            RET_COMPILE=$?
1049            echo >> $LOGFILE
1050            cat genmake_tla.log >> $LOGFILE
1051            if test "x$RET_COMPILE" = x0 ; then
1052                LIBS="$LIBS -llapack"
1053                HAVE_LAPACK=t
1054                echo "check_lapack: successful" >> $LOGFILE
1055            else
1056            # try again with "-lf77blas -lcblas" added to the libs
1057                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1058                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1059                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1060                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1061                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1062                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1063                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1064                RET_COMPILE=$?
1065                echo >> $LOGFILE
1066                cat genmake_tla.log >> $LOGFILE
1067                if test "x$RET_COMPILE" = x0 ; then
1068                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1069                    HAVE_LAPACK=t
1070                    echo "check_lapack: successful" >> $LOGFILE
1071                else
1072                # try again with "-latlas" added to the libs
1073                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1074                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1075                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1076                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1077                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1078                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1079                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1080                    RET_COMPILE=$?
1081                    echo >> $LOGFILE
1082                    cat genmake_tla.log >> $LOGFILE
1083                    if test "x$RET_COMPILE" = x0 ; then
1084                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1085                        HAVE_LAPACK=t
1086                        echo "check_lapack: successful" >> $LOGFILE
1087                    fi
1088                fi
1089            fi
1090        fi
1091        rm -f genmake_tla*
1092        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1093    }
1094    
1095    
1096  ###############################################################################  ###############################################################################
1097  #   Sequential part of script starts here  #   Sequential part of script starts here
# Line 1088  HAVE_STAT= Line 1159  HAVE_STAT=
1159  HAVE_NETCDF=  HAVE_NETCDF=
1160  HAVE_ETIME=  HAVE_ETIME=
1161  IGNORE_TIME=  IGNORE_TIME=
1162    HAVE_LAPACK=
1163    
1164  MODS=  MODS=
1165  TOOLSDIR=  TOOLSDIR=
# Line 1095  SOURCEDIRS= Line 1167  SOURCEDIRS=
1167  INCLUDEDIRS=  INCLUDEDIRS=
1168  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1169    
1170    #- local config file
1171    gm_local="genmake_local"
1172    
1173  G2ARGS=  G2ARGS=
1174  BASH=  BASH=
1175  PWD=`pwd`  PWD=`pwd`
# Line 1110  MACHINE=`uname -a` Line 1185  MACHINE=`uname -a`
1185  EXECUTABLE=  EXECUTABLE=
1186  EXEHOOK=  EXEHOOK=
1187  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1188  IEEE=  IEEE=
1189  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1190      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
# Line 1132  SVD_TAMC_FLAGS= Line 1206  SVD_TAMC_FLAGS=
1206  TAMC_EXTRA=  TAMC_EXTRA=
1207    
1208  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1209  gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS MAKEFILE MAKEDEPEND PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1210  gm_s2="FC CC IEEE USE_R4 TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1211    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1212    
1213  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1214  gm_s3="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1215  gm_s4="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1216  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s6="TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1217  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="PWD THISHOST THISUSER THISDATE THISVER MACHINE"
1218  gm_s7="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME"  gm_s8="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK"
1219    
1220  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1221  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1222  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1223  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA"
1224    
1225  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1226  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1227    
1228  cat <<EOF  cat <<EOF
# Line 1166  LOGFILE="genmake.log" Line 1241  LOGFILE="genmake.log"
1241  rm -f genmake_state genmake_*optfile $LOGFILE  rm -f genmake_state genmake_*optfile $LOGFILE
1242    
1243  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 printf "  getting local config information:  "  
 if test -f $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1244    
1245  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1246  #parse_options  #parse_options
# Line 1194  for ac_option in "$@" ; do Line 1259  for ac_option in "$@" ; do
1259      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1260    
1261      case $ac_option in      case $ac_option in
1262            
1263          -help | --help | -h | --h)          -help | --help | -h | --h)
1264              usage ;;              usage ;;
1265            
1266          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1267              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1268          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1269              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1270          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1271              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1272            
1273          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1274              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1275          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1276              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1277            
1278          -pdepend | --pdepend)          -pdepend | --pdepend)
1279              ac_prev=PKG_DEPEND ;;              ac_prev=PKG_DEPEND ;;
1280          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1281              PKG_DEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1282            
1283          -pgroups | --pgroups)          -pgroups | --pgroups)
1284              ac_prev=PKG_GROUPS ;;              ac_prev=PKG_GROUPS ;;
1285          -pgroups=* | --pgroups=*)          -pgroups=* | --pgroups=*)
1286              PKG_GROUPS=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1287            
1288          -make | --make | -m | --m)          -make | --make | -m | --m)
1289              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1290          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1291              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1292            
1293          -bash | --bash)          -bash | --bash)
1294              ac_prev=BASH ;;              ac_prev=BASH ;;
1295          -bash=* | --bash=*)          -bash=* | --bash=*)
1296              BASH=$ac_optarg ;;              BASH=$ac_optarg ;;
1297            
1298          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1299              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1300          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
1301              MAKEDEPEND=$ac_optarg ;;              MAKEDEPEND=$ac_optarg ;;
1302            
1303          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -mf | --mf)
1304              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1305          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1306              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1307            
1308          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1309              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1310              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1311              echo              echo
1312              usage              usage
1313              ;;              ;;
1314            
1315          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1316              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1317          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1318              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1319            
1320          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1321              ac_prev=MODS ;;              ac_prev=MODS ;;
1322          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1323              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1324            
1325          -disable | --disable)          -disable | --disable)
1326              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1327          -disable=* | --disable=*)          -disable=* | --disable=*)
1328              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1329            
1330          -enable | --enable)          -enable | --enable)
1331              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1332          -enable=* | --enable=*)          -enable=* | --enable=*)
1333              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1334            
1335          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1336              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1337          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 1276  for ac_option in "$@" ; do Line 1341  for ac_option in "$@" ; do
1341  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1342  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1343  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1344            
1345          -cc | --cc)          -cc | --cc)
1346              ac_prev=CC ;;              ac_prev=CC ;;
1347          -cc=* | --cc=*)          -cc=* | --cc=*)
1348              CC=$ac_optarg ;;              CC=$ac_optarg ;;
1349            
1350          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1351              ac_prev=FC ;;              ac_prev=FC ;;
1352          -fc=* | --fc=*)          -fc=* | --fc=*)
1353              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1354            
1355          -fs | --fs)          -fs | --fs)
1356              ac_prev=FS ;;              ac_prev=FS ;;
1357          -fs=* | --fs=*)          -fs=* | --fs=*)
1358              FS=$ac_optarg ;;              FS=$ac_optarg ;;
1359            
1360          -fs90 | --fs90)          -fs90 | --fs90)
1361              ac_prev=FS90 ;;              ac_prev=FS90 ;;
1362          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1363              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
           
         -ieee | --ieee)  
             IEEE=true ;;  
         -noieee | --noieee)  
             IEEE= ;;  
1364    
1365          -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )          -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1366              USE_R4=true ;;              USE_R4=true ;;
1367    
1368            -ieee | --ieee)
1369                IEEE=true ;;
1370            -noieee | --noieee)
1371                echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1372            -devel | --devel)
1373                IEEE=true ; DEVEL=true ;;
1374            -gsl | --gsl)
1375                GSL=true ;;
1376    
1377          -ts | --ts)          -ts | --ts)
1378              TS=true ;;              TS=true ;;
1379          -papis | --papis)          -papis | --papis)
# Line 1320  for ac_option in "$@" ; do Line 1389  for ac_option in "$@" ; do
1389          -hpmt | --hpmt)          -hpmt | --hpmt)
1390              HPMT=true ;;              HPMT=true ;;
1391    
         -gsl | --gsl)  
             GSL=true ;;  
   
         -devel | --devel)  
             DEVEL=true ;;  
   
1392          -mpi | --mpi)          -mpi | --mpi)
1393              MPI=true ;;              MPI=true ;;
1394          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1395              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1396              MPI=true ;;              MPI=true ;;
1397            
1398          -omp | --omp)          -omp | --omp)
1399              OMP=true ;;              OMP=true ;;
1400          -omp=* | --omp=*)          -omp=* | --omp=*)
1401              OMPFLAG=$ac_optarg              OMPFLAG=$ac_optarg
1402              OMP=true ;;              OMP=true ;;
1403            
1404          -ds | --ds)          -ds | --ds)
1405              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1406            
1407            -extra_flag | --extra_flag)
1408                ac_prev=FEXTRAFLAGS ;;
1409            -extra_flag=* | --extra_flag=*)
1410                FEXTRAFLAGS=$ac_optarg ;;
1411    
1412          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1413              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1414          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 1350  for ac_option in "$@" ; do Line 1418  for ac_option in "$@" ; do
1418              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1419          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1420              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1421            
1422          -ignoretime | -ignore_time | --ignoretime | --ignore_time)          -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1423              IGNORE_TIME="-DIGNORE_TIME" ;;              IGNORE_TIME="-DIGNORE_TIME" ;;
1424    
# Line 1361  for ac_option in "$@" ; do Line 1429  for ac_option in "$@" ; do
1429              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1430              usage              usage
1431              ;;              ;;
1432            
1433          *)          *)
1434              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1435              usage              usage
1436              ;;              ;;
1437            
1438      esac      esac
1439    
1440  done  done
1441    
1442    printf "  getting local config information:  "
1443    if test -f $gm_local ; then
1444        echo "using $gm_local"
1445        . $gm_local
1446    else
1447        echo "none found"
1448    fi
1449    
1450  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1451      echo      echo
1452      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1453      echo "  file.  This file format is no longer supported.  For directions on"      echo "  file.  This file format is no longer supported.  For directions on"
1454      echo "  how to setup and use the new \"genmake2\" script, please see:"      echo "  how to setup and use the new \"genmake2\" script, please see:"
1455      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1456      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1457      echo "WARNING: ignore \"./.genmakerc\" and continue."      echo "WARNING: ignore \"./.genmakerc\" and continue."
1458      echo      echo
# Line 1391  if test "x${ROOTDIR}" = x ; then Line 1467  if test "x${ROOTDIR}" = x ; then
1467          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1468              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1469                  ROOTDIR=$d                  ROOTDIR=$d
1470                  printf "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1471                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1472                  break                  break
1473              fi              fi
1474          done          done
# Line 1424  if test "x$MAKEFILE" = x ; then Line 1500  if test "x$MAKEFILE" = x ; then
1500      MAKEFILE="Makefile"      MAKEFILE="Makefile"
1501  fi  fi
1502    
1503  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:"
1504  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1505      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1506          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
# Line 1453  if test "x$OPTFILE" != xNONE ; then Line 1529  if test "x$OPTFILE" != xNONE ; then
1529      fi      fi
1530  fi  fi
1531    
1532  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1533  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1534      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
1535          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
# Line 1501  EOF Line 1577  EOF
1577  fi  fi
1578  if test "x$GET_FC_VERSION" != x ; then  if test "x$GET_FC_VERSION" != x ; then
1579    echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE    echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1580    $FC $GET_FC_VERSION >> $LOGFILE 2>&1    ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1581    echo "--- compiler version ----" >> $LOGFILE    if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1582      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1583      if test -s genmake_fc_vers1 ; then
1584        cat genmake_fc_vers1 >> $LOGFILE
1585      else
1586        cat genmake_fc_vers2 >> $LOGFILE
1587      fi
1588      echo "<-- compiler version ----" >> $LOGFILE
1589      rm -f genmake_fc_vers1 genmake_fc_vers2
1590  fi  fi
1591    
1592  if test "x$CC" = x ; then  if test "x$CC" = x ; then
# Line 1574  check_for_broken_Ff Line 1658  check_for_broken_Ff
1658    
1659  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1660        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1661        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI"
1662  fi  fi
1663  if test ! "x$OMP" = x ; then  if test ! "x$OMP" = x ; then
1664        echo "  Add OMPFLAG and turn on OpenMP cpp macros"        echo "  Add OMPFLAG and turn on OpenMP cpp macros"
# Line 1591  fi Line 1675  fi
1675  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1676        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
1677        if test ! "x$FOOLAD" = x ; then        if test ! "x$FOOLAD" = x ; then
1678              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1679        else        else
1680              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1681        fi        fi
# Line 1627  if test ! "x$PAPI" = x ; then Line 1711  if test ! "x$PAPI" = x ; then
1711            echo "  Sticking with PAPI flop summary per timestep!"            echo "  Sticking with PAPI flop summary per timestep!"
1712        else        else
1713            echo "  Turning on performance analysis with PAPI"            echo "  Turning on performance analysis with PAPI"
1714            echo "  Please make sure PAPIINC, PAPILIB are defined"            echo "  Please make sure PAPIINC, PAPILIB are defined"
1715            DEFINES="$DEFINES -DUSE_PAPI"            DEFINES="$DEFINES -DUSE_PAPI"
1716            INCLUDES="$INCLUDES $PAPIINC"            INCLUDES="$INCLUDES $PAPIINC"
1717            LIBS="$LIBS $PAPILIB"            LIBS="$LIBS $PAPILIB"
# Line 1639  if test ! "x$PCL" = x ; then Line 1723  if test ! "x$PCL" = x ; then
1723            echo "  Sticking with PCL flop summary per timestep!"            echo "  Sticking with PCL flop summary per timestep!"
1724        else        else
1725            echo "  Turning on performance analysis with PCL"            echo "  Turning on performance analysis with PCL"
1726            echo "  Please make sure PCLINC, PCLLIB are defined"            echo "  Please make sure PCLINC, PCLLIB are defined"
1727            DEFINES="$DEFINES -DUSE_PCL"            DEFINES="$DEFINES -DUSE_PCL"
1728            INCLUDES="$INCLUDES $PCLINC"            INCLUDES="$INCLUDES $PCLINC"
1729            LIBS="$LIBS $PCLLIB"            LIBS="$LIBS $PCLLIB"
# Line 1649  if test ! "x$HPMT" = x ; then Line 1733  if test ! "x$HPMT" = x ; then
1733        if test ! "x$PAPI" = x ; then        if test ! "x$PAPI" = x ; then
1734            echo "  PAPI and the HPM Toolkit cannot co-exist!"            echo "  PAPI and the HPM Toolkit cannot co-exist!"
1735            echo "  Sticking with PAPI!"            echo "  Sticking with PAPI!"
1736        else if test ! "x$PCL" = x ; then        else
1737            if test ! "x$PCL" = x ; then
1738            echo "  PCL and the HPM Toolkit cannot co-exist!"            echo "  PCL and the HPM Toolkit cannot co-exist!"
1739            echo "  Sticking with PCL!"            echo "  Sticking with PCL!"
1740        else          else
1741            echo "  Turning on performance analysis with the HPM Toolkit"            echo "  Turning on performance analysis with the HPM Toolkit"
1742            echo "  Please make sure HPMTINC, HPMTLIB are defined"            echo "  Please make sure HPMTINC, HPMTLIB are defined"
1743            DEFINES="$DEFINES -DUSE_LIBHPM"            DEFINES="$DEFINES -DUSE_LIBHPM"
1744            INCLUDES="$INCLUDES $HPMTINC"            INCLUDES="$INCLUDES $HPMTINC"
1745            LIBS="$LIBS $HPMTLIB"            LIBS="$LIBS $HPMTLIB"
1746        fi          fi
1747        fi        fi
1748  fi  fi
1749  if test ! "x$GSL" = x ; then  if test ! "x$GSL" = x ; then
# Line 1739  rm -f genmake_tcomp* Line 1824  rm -f genmake_tcomp*
1824  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1825  check_HAVE_CLOC  check_HAVE_CLOC
1826  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1827        DEFINES="$DEFINES -DHAVE_CLOC"
1828      echo "yes"      echo "yes"
1829  else  else
1830      echo "no"      echo "no"
# Line 1753  rm -f genmake_t* Line 1839  rm -f genmake_t*
1839  printf "  Can we unlimit the stack size using $FC...  "  printf "  Can we unlimit the stack size using $FC...  "
1840  check_HAVE_SETRLSTK  check_HAVE_SETRLSTK
1841  if test "x$HAVE_SETRLSTK" = xt ; then  if test "x$HAVE_SETRLSTK" = xt ; then
1842        DEFINES="$DEFINES -DHAVE_SETRLSTK"
1843      echo "yes"      echo "yes"
1844  else  else
1845      echo "no"      echo "no"
# Line 1762  rm -f genmake_t* Line 1849  rm -f genmake_t*
1849  printf "  Can we register a signal handler using $FC...  "  printf "  Can we register a signal handler using $FC...  "
1850  check_HAVE_SIGREG  check_HAVE_SIGREG
1851  if test "x$HAVE_SIGREG" = xt ; then  if test "x$HAVE_SIGREG" = xt ; then
1852        DEFINES="$DEFINES -DHAVE_SIGREG"
1853      echo "yes"      echo "yes"
1854  else  else
1855      echo "no"      echo "no"
# Line 1771  rm -f genmake_t* Line 1859  rm -f genmake_t*
1859  printf "  Can we use stat() through C calls...  "  printf "  Can we use stat() through C calls...  "
1860  check_HAVE_STAT  check_HAVE_STAT
1861  if test "x$HAVE_STAT" != x ; then  if test "x$HAVE_STAT" != x ; then
1862        DEFINES="$DEFINES -DHAVE_STAT"
1863      echo "yes"      echo "yes"
1864  else  else
1865      echo "no"      echo "no"
# Line 1780  rm -f genmake_t* Line 1869  rm -f genmake_t*
1869  printf "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
1870  check_netcdf_libs  check_netcdf_libs
1871  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
1872        DEFINES="$DEFINES -DHAVE_NETCDF"
1873        echo "yes"
1874    else
1875        echo "no"
1876    fi
1877    
1878    printf "  Can we create LAPACK-enabled binaries...  "
1879    check_lapack_libs
1880    if test "x$HAVE_LAPACK" != x ; then
1881        DEFINES="$DEFINES -DHAVE_LAPACK"
1882      echo "yes"      echo "yes"
1883  else  else
1884      echo "no"      echo "no"
# Line 1791  if test "x$EMBED_SRC" = xt ; then Line 1890  if test "x$EMBED_SRC" = xt ; then
1890  fi  fi
1891  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
1892      ENABLE="$ENABLE embed_files"      ENABLE="$ENABLE embed_files"
1893    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
1894  fi  fi
1895    
1896  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
# Line 1968  else Line 2068  else
2068          exit 1          exit 1
2069      else      else
2070          echo "    using PKG_LIST=\"$PKG_LIST\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2071          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2072          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2073          RETVAL=$?          RETVAL=$?
2074          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
# Line 2018  for i in $PACKAGES ; do Line 2118  for i in $PACKAGES ; do
2118      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2119      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2120          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2121          exit 1          exit 1
2122      fi      fi
2123      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2124  done  done
# Line 2063  else Line 2163  else
2163          echo "Error: problem encountered while building source files in pkg/mnc:"          echo "Error: problem encountered while building source files in pkg/mnc:"
2164          cat make_mnc.errors 1>&2          cat make_mnc.errors 1>&2
2165          if test "x$mnc_in" = x0 ; then          if test "x$mnc_in" = x0 ; then
2166              exit 1              exit 1
2167          else          else
2168              DISABLE="$DISABLE mnc"              DISABLE="$DISABLE mnc"
2169          fi          fi
# Line 2096  EOF Line 2196  EOF
2196      fi      fi
2197  fi  fi
2198    
2199    #  Check for package RADTRANS: if LAPACK is not available,
2200    #  then issue a warning that the direct radtrans solver is not available.
2201    if test "x$HAVE_LAPACK" != xt ; then
2202        echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1
2203        RETVAL=$?
2204        if test "x$RETVAL" = x0 ; then
2205            cat <<EOF
2206    *********************************************************************
2207    WARNING: the "radtrans" package was enabled but tests failed to
2208      compile LAPACK applications.  This means that the direct radtrans
2209      solver is not available and compilation will fail if it is enabled.
2210      If you want to use the direct solver, please check that:
2211    
2212      1) LAPACK is correctly installed for this compiler and
2213      2) the LIBS variable (within the "optfile") specifies the correct
2214         LAPACK library to link against.
2215    *********************************************************************
2216    EOF
2217        fi
2218    fi
2219    
2220  if  test "x${PKG_DEPEND}" != x ; then  if  test "x${PKG_DEPEND}" != x ; then
2221    echo "  applying package dependency rules"    echo "  applying package dependency rules"
2222    ck=    ck=
# Line 2141  if  test "x${PKG_DEPEND}" != x ; then Line 2262  if  test "x${PKG_DEPEND}" != x ; then
2262    
2263          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2264          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2265              #echo "   " $pname ": need to add :" $dname              #echo "   " $pname ": need to add :" $dname
2266              in_dis="f"              in_dis="f"
2267              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2268                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 2166  if  test "x${PKG_DEPEND}" != x ; then Line 2287  if  test "x${PKG_DEPEND}" != x ; then
2287              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2288              exit 1              exit 1
2289          fi          fi
2290          i=`echo "$i + 1" | bc -l`          i=`echo "$i + 1" | bc -l`
2291          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2292      done      done
2293      ck=$ck"t"      ck=$ck"t"
# Line 2207  for n in $names ; do Line 2328  for n in $names ; do
2328          done          done
2329          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2330              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2331              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2332          fi          fi
2333      fi      fi
2334  done  done
# Line 2220  for i in $PACKAGES ; do Line 2341  for i in $PACKAGES ; do
2341  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2342      case $i in      case $i in
2343          aim_v23)          aim_v23)
2344              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2345              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
2346              ;;              ;;
2347      esac      esac
# Line 2262  for i in $spaths ; do Line 2383  for i in $spaths ; do
2383      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2384          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2385          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2386          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2387          for n in $names ; do          for n in $names ; do
2388              test_for_package_in_cpp_options $CPP_OPTIONS $n              test_for_package_in_cpp_options $CPP_OPTIONS $n
2389          done          done
2390      fi      fi
2391      try="$i/CPP_EEOPTIONS.h"      try="$i/CPP_EEOPTIONS.h"
2392      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2393          echo "    found CPP_EEOPTIONS=\"$try\""          echo "    found CPP_EEOPTIONS=\"$try\""
2394          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2395  #**** not yet enabled ****  #**** not yet enabled ****
2396  #        test_for_mpi_in_cpp_eeoptions $try  #        test_for_mpi_in_cpp_eeoptions $try
2397  #**** not yet enabled ****  #**** not yet enabled ****
# Line 2361  if test "x$OPENAD" != x ; then Line 2482  if test "x$OPENAD" != x ; then
2482      OAD_DONT_TRANSFORM="/dev/null"      OAD_DONT_TRANSFORM="/dev/null"
2483      OAD_KEEP_ORIGINAL="/dev/null"      OAD_KEEP_ORIGINAL="/dev/null"
2484      OAD_CB2M_FILES="/dev/null"      OAD_CB2M_FILES="/dev/null"
2485        OADTOOLS="$TOOLSDIR/OAD_support"
2486        test -f "oadtempflile"  &&  \rm -f "oadtempflile"
2487    cat >> "oadtempflile" <<EOF
2488    $OADTOOLS
2489    EOF
2490      echo "  looking for dontCompile file:  "      echo "  looking for dontCompile file:  "
2491      for i in "." $MODS ; do      for i in "." $MODS ; do
2492          if test -r $i"/dontCompile" ; then          if test -r $i"/dontCompile" ; then
# Line 2416  for d in $alldirs ; do Line 2542  for d in $alldirs ; do
2542          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2543              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2544                  ignore_f=f                  ignore_f=f
2545                  case $d/$sf in                  case $d/$sf in
2546                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2547                          ignore_f=t                          ignore_f=t
2548                          ;;                          ;;
2549                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2550                          ignore_f=t                          ignore_f=t
2551                          ;;                          ;;
2552                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2553                          ignore_f=t                          ignore_f=t
2554                          ;;                          ;;
2555                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2556                          ignore_f=t                          ignore_f=t
2557                          ;;                          ;;
2558                    ./EMBEDDED_FILES.h)                    ./EMBEDDED_FILES.h)
2559                          ignore_f=t                          ignore_f=t
2560                          ;;                          ;;
2561                    *)                    *)
2562                          #  For the local directory *ONLY*,                          #  For the local directory *ONLY*,
2563                          #  ignore all soft-links                          #  ignore all soft-links
2564                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
# Line 2442  for d in $alldirs ; do Line 2568  for d in $alldirs ; do
2568                              deplist="$deplist $sf"                              deplist="$deplist $sf"
2569                          fi                          fi
2570                          ;;                          ;;
2571                  esac                  esac
2572                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2573                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2574                      case $extn in                      case $extn in
# Line 2489  for d in $alldirs ; do Line 2615  for d in $alldirs ; do
2615                          echo    " \\"  >> hsrclist.tmp                          echo    " \\"  >> hsrclist.tmp
2616                          printf " $sf" >> hsrclist.tmp                          printf " $sf" >> hsrclist.tmp
2617                          ;;                          ;;
2618                      flow)                      flow)
2619                          echo    " \\"  >> ad_flow_files.tmp                          echo    " \\"  >> ad_flow_files.tmp
2620                          printf " $sf" >> ad_flow_files.tmp                          printf " $sf" >> ad_flow_files.tmp
2621                          ;;                          ;;
# Line 2500  for d in $alldirs ; do Line 2626  for d in $alldirs ; do
2626      done      done
2627      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2628        if test "$d" != "." ; then        if test "$d" != "." ; then
2629          echo "" >> srclinks.tmp          echo "" >> srclinks.tmp
2630          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2631          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2632  # We need to make sure that the link isn't already there.  # We need to make sure that the link isn't already there.
# Line 2521  echo "" >> ad_flow_files.tmp Line 2647  echo "" >> ad_flow_files.tmp
2647  CMDLINE=$0  CMDLINE=$0
2648  for xx in "$@" ; do nw=`echo $xx | wc -w`  for xx in "$@" ; do nw=`echo $xx | wc -w`
2649      if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"      if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2650                          else CMDLINE="$CMDLINE '$xx'" ; fi                          else CMDLINE="$CMDLINE '$xx'" ; fi
2651  done  done
2652    
2653  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
# Line 2555  cat >>$MAKEFILE <<EOF Line 2681  cat >>$MAKEFILE <<EOF
2681  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2682  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2683  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2684  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2685  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2686  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 2570  INCLUDEDIRS = ${INCLUDEDIRS} Line 2694  INCLUDEDIRS = ${INCLUDEDIRS}
2694  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2695  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2696  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2697    OADTOOLS    = ${OADTOOLS}
2698    
2699  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2700  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 2593  fi Line 2718  fi
2718  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2719  # Unix ln (link)  # Unix ln (link)
2720  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2721  # Dependency generator  # Dependency generator
2722  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2723  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 2629  NOOPTFILES = ${NOOPTFILES} Line 2752  NOOPTFILES = ${NOOPTFILES}
2752  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2753  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2754  LIBS = ${LIBS}  LIBS = ${LIBS}
2755  # Name of the Mekfile  # Name of the makefile
2756  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2757    # Name of the make program
2758    MAKE = ${MAKE}
2759    
2760  EOF  EOF
2761    
# Line 2654  echo >> $MAKEFILE Line 2779  echo >> $MAKEFILE
2779  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2780  echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE  echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2781  echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2782  echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE  echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2783  echo >> $MAKEFILE  echo >> $MAKEFILE
2784  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2785  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2786    
2787  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2788    
2789  all: \$(EXECUTABLE)  all: fwd_exe_target
2790    fwd_exe_target:
2791            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2792            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2793            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2794            @-rm -f ad_config.template
2795            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2796    
2797  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2798          @echo Creating \$@ ...          @echo Creating \$@ ...
2799          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2800    
2801  depend:  depend:
2802          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2803          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2804          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2805          -rm -f makedepend.out          -rm -f makedepend.out
2806    
# Line 2677  libmitgcmuv.a: \$(OBJFILES) Line 2810  libmitgcmuv.a: \$(OBJFILES)
2810          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
2811          ar d   libmitgcmuv.a main.o          ar d   libmitgcmuv.a main.o
2812    
2813    obj: \$(OBJFILES)
2814    
2815  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2816    
2817  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
# Line 2694  clean: Line 2829  clean:
2829    
2830  # remove most of the files that "make" and "make depend" generate  # remove most of the files that "make" and "make depend" generate
2831  Clean:  Clean:
2832          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2833          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2834          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2835          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2836          -rm -f genmake_warnings genmake_errors make.log          -rm -f genmake_warnings genmake_errors make.log
2837    
2838  # remove also the executable, files that "genmake2" generates (except Makefile)  # remove also the executable, files that "genmake2" generates (except Makefile)
2839  #         and output from a run (plus log files from testreport)  #         and output from a run (plus log files from testreport)
2840  CLEAN:  CLEAN:
2841          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2842          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.bak          -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2843          -rm -f $LOGFILE genmake_state genmake_*optfile genmake.tr_log make.tr_log          -rm -f $LOGFILE genmake_state genmake_*optfile
2844            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2845          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2846          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2847          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
# Line 2721  cleanlinks: Line 2857  cleanlinks:
2857  # Special targets (SPECIAL_FILES) which are created by make  # Special targets (SPECIAL_FILES) which are created by make
2858  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2859          @echo Creating \$@ ...          @echo Creating \$@ ...
2860          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2861  AD_CONFIG.h:  AD_CONFIG.h:
2862          @echo Creating \$@ ...          @echo Creating \$@ ...
2863          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
2864  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
2865          @echo Creating \$@ ...          @echo Creating \$@ ...
2866          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
# Line 2764  cat >>$MAKEFILE <<EOF Line 2900  cat >>$MAKEFILE <<EOF
2900  ## This nullifies any default implicit rules concerning these two file types:  ## This nullifies any default implicit rules concerning these two file types:
2901  ## %.o : %.F  ## %.o : %.F
2902    
2903    # C preprocessing and replacing the _d in constants:
2904    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
2905    
2906  .F.$FS:  .F.$FS:
2907          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
2908  .$FS.o:  .$FS.o:
2909          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2910  .F.o:  .F.o:
2911          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2912  .F90.$FS90:  .F90.$FS90:
2913          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
2914  .FF90.f$FS90:  .FF90.f$FS90:
2915          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
2916  .$FS90.o:  .$FS90.o:
2917          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2918  .f$FS90.o:  .f$FS90.o:
# Line 2782  cat >>$MAKEFILE <<EOF Line 2921  cat >>$MAKEFILE <<EOF
2921  .c.o:  .c.o:
2922          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2923  .flow.flowdir:  .flow.flowdir:
2924          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
2925    
2926  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2927  .F.p:  .F.p:
2928          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
2929  .p.$FS:  .p.$FS:
2930          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2931    
# Line 2833  rm -f adSrcFiles.tmp Line 2972  rm -f adSrcFiles.tmp
2972  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2973    
2974  # ... AD ...  # ... AD ...
2975  adall: \$(EXE_AD)  adall: ad_exe_target
2976  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
2977  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
2978    
2979  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)  ad_exe_target:
2980          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @echo Update AD_CONFIG.h and make \$(EXE_AD)
2981            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2982            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2983            @-rm -f ad_config.template
2984            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
2985    
2986    ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
2987            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2988          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2989          -rm -f ad_config.template          @-rm -f ad_config.template
2990          @make \$(F77_PP_SRC_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
2991          @make \$(FLOFILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
2992          cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
2993    
2994  ad_taf_output.$FS: ad_input_code.$FS  ad_taf_output.$FS: ad_input_code.$FS
2995          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
# Line 2855  adtafonly: Line 3001  adtafonly:
3001          ls -l ad_input_code_ad.$FS          ls -l ad_input_code_ad.$FS
3002          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3003    
3004  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)  \$(EXE_AD): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ad_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3005          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
3006    
3007  ad_tamc_output.$FS: ad_input_code.$FS  ad_tamc_output.$FS: ad_input_code.$FS
# Line 2871  adonlyfwd: Line 3017  adonlyfwd:
3017  adtrick:  adtrick:
3018          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3019    
3020    adobj: ad_taf_output.o \$(OBJFILES)
3021    
3022  # ... FTL ...  # ... FTL ...
3023  ftlall: ftl_taf  ftlall: ftl_exe_target
3024  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
3025  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
3026    
3027  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)  ftl_exe_target:
3028          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3029          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3030          -rm -f ftl_config.template          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3031          @make \$(F77_PP_SRC_FILES)          @-rm -f ad_config.template
3032          @make \$(AD_FLOW_FILES)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3033          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS  
3034    ftl_input_code.$FS: \$(AD_FILES)
3035            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3036            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3037            @-rm -f ad_config.template
3038            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3039            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3040            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3041    
3042  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_taf_output.$FS: ftl_input_code.$FS
3043          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
# Line 2894  ftltafonly: Line 3049  ftltafonly:
3049          ls -l ftl_input_code_ftl.$FS          ls -l ftl_input_code_ftl.$FS
3050          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3051    
3052  ftl_taf: ftl_taf_output.o \$(OBJFILES)  \$(EXE_FTL): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ftl_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3053          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
3054    
3055  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
3056          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
# Line 2924  svd_touch: Line 3079  svd_touch:
3079          touch ad_taf_output.$FS ftl_taf_output.$FS          touch ad_taf_output.$FS ftl_taf_output.$FS
3080          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3081          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3082          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3083          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3084          -rm -f ftl_config.template          @-rm -f ad_config.template
3085    
3086  EOF  EOF
3087    
# Line 3001  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod. Line 3156  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.
3156    
3157  .PHONY: adDepend  .PHONY: adDepend
3158  adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)  adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3159          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3160          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3161          -rm -f makedepend.out          -rm -f makedepend.out
3162    
# Line 3026  f95_test.out: f95_test_mods.f90 f95_test Line 3181  f95_test.out: f95_test_mods.f90 f95_test
3181          f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1          f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3182          f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1          f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3183    
3184  # the file included below is created by the  CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
 # postProcessor and its inclusion sets the  
 # variable POSTPROCESSEDFILES  
 # used below. Because the file is made during  
 # make it won't be read until the second (recursive)  
 # invocation in the rule below  
 -include postProcess.make  
3185    
3186  AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)  AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3187    
3188  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3189    
3190  postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)  \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
 ifeq (\$(MAKELEVEL),0)  
         \$(MAKE) adAll  
 else  
         touch \$@  
 endif  
   
 \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)  
 ifeq (\$(MAKELEVEL),1)  
3191          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
 else  
         touch \$@  
 endif  
3192    
3193  # makefile debug rule  # create sources files modules from header files containing common blocks
3194  openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90  %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3195  .PHONY: openad          \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3196    
3197  # create the module files  # create new header files with USE statements for the new modules made above
3198  %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk  %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3199          ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk          \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3200    
3201  # create the header files  # change the include directives of everybody to refer to  the new header files with the USE statements
3202  %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk  %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3203          ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)          \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
   
 # change everybody else to use the new module files:  
 %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash  
         ../OAD_support/cb2mUseModules.bash $< ${MPI}  
3204    
3205  # makefile debug rule  # makefile debug rule
3206  small_f: \$(CB2M_F90_PP_SRC_FILES)  small_f: \$(CB2M_F90_PP_SRC_FILES)
# Line 3079  ad_output.txt: \$(EXE_AD) Line 3213  ad_output.txt: \$(EXE_AD)
3213          @printf 'running ... '          @printf 'running ... '
3214          @./\$(EXE_AD) > \$@          @./\$(EXE_AD) > \$@
3215    
 CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)  
3216  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3217          cat \$^ > \$@          cat \$^ > \$@
3218    
 # strip all comments and blanks to reduce  
 # the file size in order to reduce perl's memory requirements  
 ad_input_code_sf.f$FS90 : ad_input_code.f$FS90  
         cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@  
   
 # mfef90 preprocessing  
 # expand statement functions  
 # expose mfef90 specific substring handling  
 # add the w2f__types module  
 ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90  
         ./mfef90 -r8 -z -F -N132 \$<  
         mv \$<.B \$(basename \$<).B  
         ./whirl2f -openad \$(basename \$<).B  
         cat w2f__types.f90 \$(basename \$<).w2f.f > \$@  
   
3219  # canonicalizer  # canonicalizer
3220  ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py  ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3221          ./preProcess.py --timing --r8 -H -S \$< -o \$@          \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3222    
3223    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3224    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3225            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3226    
3227  # F -> WHIRL  # F -> WHIRL
3228  # note that the canonicalized version cuts off at col 72  ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3229  # doing this also for string constants which is ok as long          \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
 # as we are in fixed mode and cut of exactly there.  
 # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)  
 # characters respectively.  
 ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90  
         ./mfef90 -r8 -z -F \$<  
         mv \$<.B \$@  
3230    
3231  # WHIRL -> XAIF  # WHIRL -> XAIF
3232  ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif  ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3233          ./whirl2xaif -s -n --debug 1 -o \$@ \$<          \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3234    
3235  # XAIF -> XAIF'  # XAIF -> XAIF'
3236  ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver  ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3237          ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r          \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3238    
3239  # XAIF' -> WHIRL'  # XAIF' -> WHIRL'
3240  ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl  ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3241          ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<          \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3242    
3243  # WHIRL' -> F'  # WHIRL' -> F'
3244  ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be  ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3245          ./whirl2f -FLIST:ftn_file=\$@ -openad \$<          \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3246    
3247  # insert template directives  # insert template directives
3248  ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash  ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3249          ../OAD_support/insertTemplateDir.bash \$< \$@          \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3250    
3251  PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F  PPEXTRAS=\$(wildcard \${OADTOOLS}/ad_template.*.F) \${OADTOOLS}/ad_inline.F
3252  # postprocess F'  # postprocess F'
3253  postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)  postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3254          # the target is a placeholder to signal execution of the rule          \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i \${OADTOOLS}/ad_inline.f \$<
3255            # the target is a placeholder to trigger a single execution of the rule
3256          touch \$@          touch \$@
3257          # this step also creates the file postProcess.make but we cannot  # put this so make knows about the postprocessing output
3258          # name it as the target or else make will try to remake it for  OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
         # the include directive above for any rule, e.g. make clean  
         ./postProcess.py --progress --timing --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<  
3259    
3260  # setup some links  # link the XAIF schema files
3261  %.xsd:  %.xsd:
3262          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3263    
 mfef90:  
         \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .  
   
3264  # link the support files:  # link the support files:
3265  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3266          \$(LN) ../OAD_support/\$@ .          \$(LN) \${OADTOOLS}/\$@ .
   
 whirl2xaif xaif2whirl:  
         \$(LN) \${OPENADFORTTK}/bin/\$@ .  
   
 preProcess.py postProcess.py:  
         \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .  
   
 whirl2f whirl2f_be:  
         \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .  
   
 oadDriver:  
         \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@  
3267    
3268  AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)  AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag oadtempflile \$(PPEXTRAS:.F=.f)
3269    
3270  # ============ end OpenAD specific section ==============  # ============ end OpenAD specific section ==============
3271    
# Line 3210  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3310  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3310  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3311    
3312  # Create special header files  # Create special header files
3313  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3314  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3315      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3316  else  else
# Line 3224  else Line 3324  else
3324      fi      fi
3325  fi  fi
3326  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3327      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3328  fi  fi
3329    
3330  #  Write the "state" for future records  #  Write the "state" for future records
# Line 3233  if test "x$DUMPSTATE" = xt ; then Line 3333  if test "x$DUMPSTATE" = xt ; then
3333      for i in $gm_state ; do      for i in $gm_state ; do
3334          t1="t2=\$$i"          t1="t2=\$$i"
3335          eval $t1          eval $t1
3336          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3337      done      done
3338  fi  fi

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