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revision 1.16 by edhill, Tue Oct 21 19:31:24 2003 UTC revision 1.215 by jmc, Mon Dec 6 17:16:06 2010 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -[no]ieee | --[no]ieee
100              Do or don't use IEEE numerics.  Note that this option
101              *only* works if it is supported by the OPTFILE that
102              is being used.
103    
104        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
105              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
106              *only* works if CPP_EEOPTIONS.h allows this.
107    
108        -ignoretime | -ignore_time | --ignoretime | --ignore_time
109              Ignore all the "wall clock" routines entirely.  This will
110              not in any way hurt the model results -- it simply means
111              that the code that checks how long the model spends in
112              various routines will give junk values.
113    
114        -ts | --ts
115              Produce timing information per timestep
116        -papis | --papis
117              Produce summary MFlop/s (and IPC) with PAPI per timestep
118        -pcls | --pcls
119              Produce summary MFlop/s etc. with PCL per timestep
120        -foolad | --foolad
121              Fool the AD code generator
122        -papi | --papi
123              Performance analysis with PAPI
124        -pcl | --pcl
125              Performance analysis with PCL
126        -hpmt | --hpmt
127              Performance analysis with the HPM Toolkit
128    
129        -gsl | --gsl
130              Use GSL to control floating point rounding and precision
131        -devel | --devel
132              Add additional warning and debugging flags for development
133    
134        -mpi | --mpi
135              Include MPI header files and link to MPI libraries
136        -mpi=PATH | --mpi=PATH
137              Include MPI header files and link to MPI libraries using MPI_ROOT
138              set to PATH. i.e. Include files from \$PATH/include, link to libraries
139              from \$PATH/lib and use binaries from \$PATH/bin.
140    
141        -omp | --omp
142              Activate OpenMP code + use Compiler option OMPFLAG
143        -omp=OMPFLAG | --omp=OMPFLAG
144              Activate OpenMP code + use Compiler option OMPFLAG
145    
146        -es | --es | -embed-source | --embed-source
147              Embed a tarball containing the full source code
148              (including the Makefile, etc.) used to build the
149              executable [off by default]
150    
151        -ds | --ds
152              Report genmake internal variables status (DUMPSTATE)
153              to file "genmake_state" (for debug purpose)
154    
155      While it is most often a single word, the "NAME" variables specified
156      above can in many cases be a space-delimited string such as:
157    
158        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
159        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
160        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
161    
162      which, depending upon your shell, may need to be single-quoted.
163    
164      For more detailed genmake documentation, please see:
165    
166        http://mitgcm.org/public/devel_HOWTO/
167    
168    EOF
169    
170        exit 1
171    }
172    
173  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
174  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
175  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
176      cpp_options=$1      cpp_options=$1
177      pkg=$2      pkg=$2
178      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
179      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
180      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
181          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
182          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
183      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
184      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
185      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
186      if test "x${RETVAL}" = x0 ; then  }
187          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"  
188          exit 99  # Search for particular CPP #cmds associated with MPI
189      fi  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
190      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1  test_for_mpi_in_cpp_eeoptions() {
191        cpp_options=$1
192        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
193        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
194        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
195        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
196        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
197        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
198        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
199        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
200    }
201    
202    # Search for particular string in a file. Return 1 if detected, 0 if not
203    # usage: test_for_string_in_file file string
204    test_for_string_in_file() {
205        file=$1
206        strng=$2
207        grep -i "$strng" $file > /dev/null 2>&1
208      RETVAL=$?      RETVAL=$?
209      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
210          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
211            grep -i "$strng" $file
212          exit 99          exit 99
213      fi      fi
214      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
215  }  }
216    
217  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
218  # the package list.  # the package list.
219  expand_pkg_groups() {  expand_pkg_groups() {
220      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
221      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
222          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
223          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
# Line 54  expand_pkg_groups() { Line 228  expand_pkg_groups() {
228              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
229                  matched=1                  matched=1
230                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
231                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
232                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
233              else              else
234                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
# Line 62  expand_pkg_groups() { Line 236  expand_pkg_groups() {
236          done          done
237          PACKAGES=$new_packages          PACKAGES=$new_packages
238          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
239            return $matched
240      else      else
241          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
242      fi      fi
243  }  }
244    
245  # Guess possible config options for this host  #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
246  find_possible_configs()  {  #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
247    check_for_broken_Ff()  {
248        #  Do we have defaults for $FS and/or $FS90 ?
249        tfs=f
250        tfs9=f90
251        if test "x$FS" != x ; then
252            tfs="$FS"
253        fi
254        if test "x$FS90" != x ; then
255            tfs9="$FS90"
256        fi
257    
258      tmp1=`uname`"_"`uname -m`      #  First check the ability to create a *.F/.f pair.
259      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat <<EOF >> genmake_hello.F
260      PLATFORM=`echo $tmp2 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`        program hello
261      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`        write(*,*) 'hi'
262      echo "  The platform appears to be:  $PLATFORM"        stop
263  #     if test "x$OFLIST" = x ; then        end
264  #       echo "  No pre-defined options files were found matching this platform"  EOF
265  #       echo "  but examples for other platforms can be found in:"      cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
       
     echo "test" > test  
     ln -s ./test link  
266      RETVAL=$?      RETVAL=$?
267      if test "x${RETVAL}" = x0 ; then      if test "x$RETVAL" != x0 ; then
268          LN="ln -s"          if test "x$FS" = x ; then
269                FS='for'
270                FS90='fr9'
271                check_for_broken_Ff
272            else
273                cat <<EOF 2>&1
274    ERROR: Your file system cannot distinguish between *.F and *.f files
275      (fails the "cp" test) and this program cannot find a suitable
276      replacement extension.  Please try a different build environment or
277      contact the <MITgcm-support@mitgcm.org> list for help.
278    
279    EOF
280                exit -1
281            fi
282            return
283        fi
284        rm -f genmake_hello.*
285    
286        #  Check the ability of ${MAKE} and ${LN} to use the current set
287        #  of extensions.
288        cat <<EOF >> genmake_hello.F
289          program hello
290          write(*,*) 'hi'
291          stop
292          end
293    EOF
294        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
295        cat <<EOF >> $MAKEFILE
296    .SUFFIXES:
297    .SUFFIXES: .$tfs .F
298    .F.$tfs:
299            $LN \$< \$@
300    EOF
301        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
302        RETVAL=$?
303        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
304            if test "x$FS" = x ; then
305                FS='for'
306                FS90='fr9'
307                check_for_broken_Ff
308            else
309                cat <<EOF 2>&1
310    ERROR: Your file system cannot distinguish between *.F and *.f files
311      (fails the "make/ln" test) and this program cannot find a suitable
312      replacement extension.  Please try a different build environment or
313      contact the <MITgcm-support@mitgcm.org> list for help.
314    
315    EOF
316                exit -1
317                return
318            fi
319        fi
320        rm -f genmake_hello.* $MAKEFILE
321        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
322    
323        #  If we make it here, use the extensions
324        FS=$tfs
325        FS90=$tfs9
326        return
327    }
328    
329    look_for_makedepend()  {
330    
331        #  The "original" makedepend is part of the Imake system that is
332        #  most often distributed with XFree86 or with an XFree86 source
333        #  package.  As a result, many machines (eg. generic Linux) do not
334        #  have a system-default "makedepend" available.  For those
335        #  systems, we have two fall-back options:
336        #
337        #    1) a makedepend implementation shipped with the cyrus-imapd
338        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
339        #
340        #    2) a known-buggy xmakedpend shell script
341        #
342        #  So the choices are, in order:
343        #
344        #    1) use the user-specified program
345        #    2) use a system-wide default
346        #    3) locally build and use the cyrus implementation
347        #    4) fall back to the buggy local xmakedpend script
348        #
349        if test "x${MAKEDEPEND}" = x ; then
350            which makedepend > /dev/null 2>&1
351            RV0=$?
352            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
353            #  echo 'MAKEFILE="'$MAKEFILE'"'
354            cat <<EOF >> $MAKEFILE
355    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
356    #
357    #   Some "makedepend" implementations will die if they cannot
358    #   find a Makefile -- so this file is here to gives them an
359    #   empty one to find and parse.
360    EOF
361            cat <<EOF >> genmake_tc.f
362          program test
363          write(*,*) 'test'
364          stop
365          end
366    EOF
367            makedepend genmake_tc.f > /dev/null 2>&1
368            RV1=$?
369            test -f $MAKEFILE  &&  rm -f $MAKEFILE
370            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
371            if test "x${RV0}${RV1}" = x00 ; then
372                MAKEDEPEND=makedepend
373            else
374                echo "    a system-default makedepend was not found."
375                #  Try to build the cyrus implementation
376                build_cyrus_makedepend
377                RETVAL=$?
378                if test "x$RETVAL" != x0 ; then
379                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
380                fi
381                rm -f ./genmake_cy_md
382            fi
383      else      else
384          echo "Error: \"ln -s\" does not appear to work on this system!"          #  echo "MAKEDEPEND=${MAKEDEPEND}"
385          echo "  For help, please contact <MITgcm-support@mitgcm.org>."          echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
386          exit 1          RETVAL=$?
387            if test x"$RETVAL" = x0 ; then
388                build_cyrus_makedepend
389            fi
390      fi      fi
391      rm -f test link  }
392    
393      if test "x$CPP" = x ; then  build_cyrus_makedepend()  {
394          CPP="cpp -traditional -P"      rm -f ./genmake_cy_md
395        (
396            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
397                &&  ./configure > /dev/null 2>&1  \
398                &&  make > /dev/null 2>&1
399            if test -x ./makedepend.exe ; then
400                $LN ./makedepend.exe ./makedepend
401            fi
402            ./makedepend ifparser.c > /dev/null 2>&1  \
403                &&  echo "true"
404        ) > ./genmake_cy_md
405        grep true ./genmake_cy_md > /dev/null 2>&1
406        RETVAL=$?
407        rm -f ./genmake_cy_md
408        if test "x$RETVAL" = x0 ; then
409            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
410            return 0
411        else
412            echo "WARNING: unable to build cyrus-imapd-makedepend"
413            return 1
414      fi      fi
415    }
416    
417      # look for possible fortran compilers  build_embed_encode()
418      tmp="$MITGCM_FC $FC g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"  {
419      p_FC=      printf "  building the embed-encode utility...  "
420        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
421            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
422                echo
423                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
424                echo
425                EMBED_SRC=f
426                return 1
427            fi
428            clist="cc gcc c89 $CC"
429            for ic in $clist ; do
430                comm="$ic -o encode_files encode_files.c"
431                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
432                RETVAL=$?
433                if test "x$RETVAL" = x0 ; then
434                    echo "OK"
435                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
436                    return 0
437                fi
438            done
439            echo
440            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
441            echo "      so it has been disabled"
442            echo
443            EMBED_SRC=f
444            return 1
445        fi
446        echo "OK"
447        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
448    }
449    
450    #  look for possible C compilers
451    look_for_C_compilers() {
452        echo >> $LOGFILE
453        echo "running: look_for_C_compilers()" >> $LOGFILE
454        rm -f ./genmake_hello.c  ./genmake_hello
455        cat >> genmake_hello.c << EOF
456    #include <stdio.h>
457    int main(int argc, char **argv) {
458      printf("Hello!\n");
459      return 0;
460    }
461    EOF
462        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
463        p_CC=
464      for c in $tmp ; do      for c in $tmp ; do
465          rm -f ./hello.f ./hello          COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
466          cat >> hello.f <<EOF          echo $COMM >> $LOGFILE
467            $COMM >> $LOGFILE 2>&1
468            RETVAL=$?
469            if test "x${RETVAL}" = x0 ; then
470                echo " $c test successful" >> $LOGFILE
471                p_CC="$p_CC $c"
472            fi
473        done
474        rm -f ./genmake_hello.c ./genmake_hello
475        if test "x${p_CC}" = x ; then
476            cat 1>&2 <<EOF
477    
478    Error: No C compilers were found in your path.  Please specify one using:
479    
480        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
481        2) the CC or MITGCM_CC environment variables.
482    
483    EOF
484            exit 1
485        else
486            echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
487            if test "x$CC" = x ; then
488                CC=`echo $p_CC | $AWK '{print $1}'`
489                echo "  Setting C compiler to: "$CC
490            fi
491        fi
492        echo " --> set CC='$CC'" >> $LOGFILE
493    }
494    
495    # Guess possible config options for this host
496    find_possible_optfile()  {
497    
498        echo >> $LOGFILE
499        echo "running: find_possible_optfile()" >> $LOGFILE
500        tmp1=`uname`"_"`uname -m`
501        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
502        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
503        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
504        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
505        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
506        PLATFORM=$tmp3
507        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
508        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
509        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
510    
511        #================================================================
512        #  look for possible FORTRAN compilers
513        echo "  look for possible FORTRAN compilers" >> $LOGFILE
514        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
515        p_FC=
516        rm -f ./genmake_hello.f
517        cat >> genmake_hello.f <<EOF
518        program hello        program hello
519        do i=1,3        do i=1,3
520          print *, 'hello world : ', i          print *, 'hello world : ', i
521        enddo        enddo
522        end        end
523  EOF  EOF
524          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
525            COMM="$f -o genmake_hello genmake_hello.f"
526            echo $COMM >> $LOGFILE
527            $COMM >> $LOGFILE 2>&1
528          RETVAL=$?          RETVAL=$?
529          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
530              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
531                p_FC="$p_FC $f"
532          fi          fi
533      done      done
534        rm -f ./genmake_hello.f ./genmake_hello
535      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
536          cat 1>&2 <<EOF          cat 1>&2 <<EOF
537    
# Line 128  Error: No Fortran compilers were found i Line 539  Error: No Fortran compilers were found i
539    
540      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
541      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
542      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
543    
544  EOF  EOF
545          exit 1          exit 1
546      else      else
547          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
548          echo "   "$p_FC      fi
549          if test "x$FC" = x ; then  
550              FC=`echo $p_FC | $AWK '{print $1}'`      #  Use the first of the compilers found in the current PATH
551          fi      #  that has a correctly-named optfile
552        if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
553            for i in $p_FC ; do
554                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
555                if test -r $OPTFILE ; then
556                    echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
557                    break
558                fi
559            done
560        fi
561    
562        if test "x$OPTFILE" = x ; then
563            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
564            if test ! -r $OPTFILE ; then
565                 echo "  I looked for the file "$OPTFILE" but did not find it"
566            fi
567      fi      fi
568    
     for i in $p_FC ; do  
         p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
         if test -r $p_OF ; then  
             OPTFILE=$p_OF  
             echo "  The options file:  $p_OF"  
             echo "    appears to match so we'll use it."  
             break  
         fi  
     done  
569      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
570          cat 1>&2 <<EOF          cat 1>&2 <<EOF
571    
# Line 164  Error: No options file was found in:  $R Line 581  Error: No options file was found in:  $R
581  EOF  EOF
582          exit 1          exit 1
583      fi      fi
584        
585  #     # look for possible MPI libraries  #     # look for possible MPI libraries
586  #     mpi_libs=  #     mpi_libs=
587  #     mpi_fort=`which mpif77 2>/dev/null`  #     mpi_fort=`which mpif77 2>/dev/null`
# Line 183  EOF Line 600  EOF
600  #       if test "x${RETVAL}" = x0 ; then  #       if test "x${RETVAL}" = x0 ; then
601  #           a=`cat out`  #           a=`cat out`
602  #           for i in $a ; do  #           for i in $a ; do
603  #               case $i in  #               case $i in
604  #                   -*)  #                   -*)
605  #                       mpi_libs="$mpi_libs $i" ;;  #                       mpi_libs="$mpi_libs $i" ;;
606  #               esac  #               esac
# Line 193  EOF Line 610  EOF
610  #       fi  #       fi
611  #       rm -f test.f out  #       rm -f test.f out
612  #     fi  #     fi
   
613  }  }
614    
615  #  Parse the package dependency information  #  Parse the package dependency information
# Line 202  get_pdepend_list()  { Line 618  get_pdepend_list()  {
618      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
619      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
620      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
621          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
622          > ./.pd_tmp          > ./.pd_tmp
623      source ./.pd_tmp      RETVAL=$?
624        if test ! "x${RETVAL}" = x0 ; then
625          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
626          exit 1
627        fi
628        . ./.pd_tmp
629      rm -f ./.pd_tmp      rm -f ./.pd_tmp
630    }
631    
632    #  Build a CPP macro to automate calling C routines from FORTRAN
633    get_fortran_c_namemangling()  {
634    
635        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
636        if test ! "x$FC_NAMEMANGLE" = x ; then
637            return 0
638        fi
639        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
640    
641        default_nm="#define FC_NAMEMANGLE(X) X ## _"
642    
643        cat > genmake_test.c <<EOF
644    void tcall( char * string ) { tsub( string ); }
645    EOF
646        COMM="$CC $CFLAGS -c genmake_test.c"
647        echo ' '$COMM >> $LOGFILE
648        $COMM >> $LOGFILE 2>&1
649        RETVAL=$?
650        if test "x$RETVAL" != x0 ; then
651            FC_NAMEMANGLE=$default_nm
652            cat <<EOF>> $LOGFILE
653    
654     WARNING: C test compile fails
655     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
656     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
657    EOF
658            return 1
659        fi
660        c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
661        RETVAL=$?
662        if test "x$RETVAL" != x0 ; then
663            FC_NAMEMANGLE=$default_nm
664            cat <<EOF>> $LOGFILE
665    
666     WARNING: The "nm" command failed.
667     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
668     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
669    EOF
670            return 1
671        fi
672        cat > genmake_tcomp.$FS <<EOF
673          subroutine tcall( string )
674          character*(*) string
675          call tsub( string )
676          end
677    EOF
678        COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
679        echo ' '$COMM >> $LOGFILE
680        $COMM >> $LOGFILE 2>&1
681        RETVAL=$?
682        if test "x$RETVAL" != x0 ; then
683            FC_NAMEMANGLE=$default_nm
684            cat <<EOF>> $LOGFILE
685    
686     WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
687     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
688     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
689    EOF
690            return 1
691        fi
692        f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
693        RETVAL=$?
694        if test "x$RETVAL" != x0 ; then
695            FC_NAMEMANGLE=$default_nm
696            cat <<EOF>> $LOGFILE
697    
698     WARNING: The "nm" command failed.
699     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
700     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
701    EOF
702            return 1
703        fi
704    
705        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
706        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
707        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
708        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
709    
710        nmangle="X"
711        if test "x$c_a" != "x$f_a" ; then
712            comm="echo x$f_a | sed -e 's|x$c_a||'"
713            a=`eval $comm`
714            nmangle="$a ## $nmangle"
715        fi
716        if test "x$c_b" != "x$f_b" ; then
717            comm="echo x$f_b | sed -e 's|x$c_b||'"
718            b=`eval $comm`
719            nmangle="$nmangle ## $b"
720        fi
721    
722        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
723    
724        #  cleanup the testing files
725        rm -f genmake_tcomp.* genmake_test.*
726    
727        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
728    }
729    
730    check_HAVE_CLOC()  {
731        echo >> $LOGFILE
732        echo "running: check_HAVE_CLOC()" >> $LOGFILE
733        get_fortran_c_namemangling
734        cat <<EOF > genmake_tc_1.c
735    $FC_NAMEMANGLE
736    #include <stdio.h>
737    #include <stdlib.h>
738    #include <unistd.h>
739    #include <assert.h>
740    #include <sys/time.h>
741    void FC_NAMEMANGLE(cloc) ( double *curtim )
742    {
743     struct timeval tv1;
744     gettimeofday(&tv1 , (void *)NULL );
745     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
746     *curtim = *curtim/1.E6;
747    }
748    EOF
749        COMM="$CC $CFLAGS -c genmake_tc_1.c"
750        echo $COMM >> $LOGFILE
751        $COMM >> $LOGFILE 2>&1
752        RET_C=$?
753        cat <<EOF > genmake_tc_2.$FS
754          program hello
755          REAL*8 wtime
756          external cloc
757          call cloc(wtime)
758          print *," HELLO WORLD", wtime
759          end
760    EOF
761        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
762        echo $COMM >> $LOGFILE
763        $COMM >> $LOGFILE 2>&1
764        RET_F=$?
765        test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
766        RETVAL=$?
767        if test "x$RETVAL" = x0 ; then
768            HAVE_CLOC=t
769            DEFINES="$DEFINES -DHAVE_CLOC"
770        fi
771        rm -f genmake_tc*
772        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
773    }
774    
775      echo -n "PNAME = "${}  check_HAVE_SIGREG()  {
776        if test ! "x$HAVE_SIGREG" = x ; then
777            return
778        fi
779        echo >> $LOGFILE
780        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
781        get_fortran_c_namemangling
782        cat <<EOF > genmake_tc_1.c
783    $FC_NAMEMANGLE
784    #include <stdlib.h>
785    #include <stdio.h>
786    #include <signal.h>
787    #include <errno.h>
788    #include <ucontext.h>
789    
790    int * ip;
791    
792    static void killhandler(
793        unsigned int sn, siginfo_t  si, struct ucontext *sc )
794    {
795        *ip = *ip + 1;
796        return;
797  }  }
798    
799    void FC_NAMEMANGLE(sigreg) (int * aip)
800    {
801        struct sigaction s;
802        ip = aip;
803        s.sa_flags = SA_SIGINFO;
804        s.sa_sigaction = (void *)killhandler;
805        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
806            printf("Sigaction returned error = %d\n", errno);
807            exit(0);
808        }
809        return;
810    }
811    EOF
812        COMM="$CC $CFLAGS -c genmake_tc_1.c"
813        echo $COMM >> $LOGFILE
814        $COMM >> $LOGFILE 2>&1
815        RET_C=$?
816        cat <<EOF > genmake_tc_2.$FS
817          program hello
818          integer anint
819          common /iv/ anint
820          external sigreg
821          call sigreg(anint)
822          end
823    EOF
824        cat genmake_tc_2.$FS >> $LOGFILE
825        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
826        echo $COMM >> $LOGFILE
827        $COMM >> $LOGFILE 2>&1
828        RETVAL=$?
829        if test "x$RETVAL" = x0 ; then
830            HAVE_SIGREG=t
831            DEFINES="$DEFINES -DHAVE_SIGREG"
832        fi
833        rm -f genmake_tc*
834        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
835    }
836    
837  #  Explain usage  check_HAVE_SETRLSTK()  {
838  usage()  {      if test "x$HAVE_SETRLSTK" = xt ; then
839      echo          DEFINES="$DEFINES -DHAVE_SETRLSTK"
840      echo "Usage: "$0" [OPTIONS]"          return
841      echo "  where [OPTIONS] can be:"      fi  
842      echo      if test ! "x$HAVE_SETRLSTK" = x ; then
843      echo "    -help | --help | -h | --h"          return
844      echo "    -nooptfile | --nooptfile"      fi
845      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"      echo >> $LOGFILE
846      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"      echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
847      echo "    -pdepend NAME | --pdepend NAME"      get_fortran_c_namemangling
848      echo "      -pdepend=NAME | --pdepend=NAME"      cat <<EOF > genmake_tc_1.c
849      echo "    -pdefault NAME | --pdefault NAME"  $FC_NAMEMANGLE
850      echo "      -pdefault=NAME | --pdefault=NAME"  #include <sys/time.h>
851      echo "    -make NAME | -m NAME"  #include <sys/resource.h>
852      echo "      --make=NAME | -m=NAME"  #include <unistd.h>
853      echo "    -makefile NAME | -mf NAME"  void FC_NAMEMANGLE(setrlstk) ()
854      echo "      --makefile=NAME | -mf=NAME"  {
855      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"      struct rlimit rls;
856      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"      rls.rlim_cur = RLIM_INFINITY;
857      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"      rls.rlim_max = RLIM_INFINITY;
858      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"      setrlimit(RLIMIT_STACK, &rls);
859      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"      return;
860      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"  }
861      echo "    -disable NAME | --disable NAME"  EOF
862      echo "      -disable=NAME | --disable=NAME"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
863      echo "    -enable NAME | --enable NAME"      echo $COMM >> $LOGFILE
864      echo "      -enable=NAME | --enable=NAME"      $COMM >> $LOGFILE 2>&1
865      echo "    -standarddirs NAME | --standarddirs NAME"      RET_C=$?
866      echo "      -standarddirs=NAME | --standarddirs=NAME"      cat <<EOF > genmake_tc_2.$FS
867      echo "    -noopt NAME | --noopt NAME"        program hello
868      echo "      -noopt=NAME | --noopt=NAME"        external setrlstk
869  #    echo "    -cpp NAME | --cpp NAME"        call setrlstk()
870  #    echo "      -cpp=NAME | --cpp=NAME"        end
871      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"  EOF
872      echo "      -fc=NAME | --fc=NAME"      cat genmake_tc_2.$FS >> $LOGFILE
873      echo "    -[no]ieee | --[no]ieee"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
874      echo "    -[no]mpi | --[no]mpi"      echo $COMM >> $LOGFILE
875      echo "    -[no]jam | --[no]jam"      $COMM >> $LOGFILE 2>&1
876      echo      RETVAL=$?
877      echo "  and NAME is a string such as:"      if test "x$RETVAL" = x0 ; then
878      echo          HAVE_SETRLSTK=t
879      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"          DEFINES="$DEFINES -DHAVE_SETRLSTK"
880      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"      fi
881      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"      rm -f genmake_tc*
882      echo      echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
     echo "  which, depending upon your shell, may need to be single-quoted"  
     echo "  if it contains spaces, dashes, or other special characters."  
     exit 1  
883  }  }
884    
885  #eh3 # This is the generic configuration.  check_HAVE_STAT()  {
886  #eh3 set LN         = ( 'ln -s' )      echo >> $LOGFILE
887  #eh3 set CPP        = ( '/lib/cpp -P' )      echo "running: check_HAVE_STAT()" >> $LOGFILE
888  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      get_fortran_c_namemangling
889  #eh3 set KPP        = (  )      cat <<EOF > genmake_tc_1.c
890  #eh3 set FC         = ( 'f77' )  $FC_NAMEMANGLE
891  #eh3 set LINK       = $FC  #include <stdio.h>
892  #eh3 set MAKEDEPEND = ( 'makedepend' )  #include <stdlib.h>
893  #eh3 set INCLUDES   = ( -I. )  #include <unistd.h>
894  #eh3 set FFLAGS     = (  )  #include <sys/stat.h>
895  #eh3 set FOPTIM     = (  )  #include <sys/types.h>
896  #eh3 set CFLAGS     = (  )  void FC_NAMEMANGLE(tfsize) ( int *nbyte )
897  #eh3 set KFLAGS1    = (  )  {
898  #eh3 set KFLAGS2    = (  )      char name[512];
899  #eh3 set LIBS       = (  )      struct stat astat;
900  #eh3 set KPPFILES   = (  )  
901  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )      name[0] = 'a'; name[1] = '\0';
902  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )      if (! stat(name, &astat))
903            *nbyte = (int)(astat.st_size);
904        else
905            *nbyte = -1;
906    }
907    EOF
908        COMM="$CC $CFLAGS -c genmake_tc_1.c"
909        echo $COMM >> $LOGFILE
910        $COMM >> genmake_tc.log 2>&1
911        RET_C=$?
912        cat <<EOF > genmake_tc_2.$FS
913          program hello
914          integer nbyte
915          call tfsize(nbyte)
916          print *," HELLO WORLD", nbyte
917          end
918    EOF
919        cat genmake_tc_2.$FS >> $LOGFILE
920        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
921        echo $COMM >> $LOGFILE
922        $COMM >> genmake_tc.log 2>&1
923        RETVAL=$?
924        if test "x$RETVAL" = x0 ; then
925            HAVE_STAT=t
926            DEFINES="$DEFINES -DHAVE_STAT"
927        fi
928        rm -f genmake_tc*
929        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
930    }
931    
932    check_netcdf_libs()  {
933        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
934            return
935        fi
936        echo >> $LOGFILE
937        echo "running: check_netcdf_libs()" >> $LOGFILE
938        cat <<EOF > genmake_tnc.F
939          program fgennc
940    #include "netcdf.inc"
941    EOF
942        if test ! "x$MPI" = x ; then
943            echo '#include "mpif.h"' >> genmake_tnc.F
944        fi
945        cat <<EOF >> genmake_tnc.F
946          integer iret, ncid, xid
947          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
948          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
949          iret = nf_def_dim(ncid, 'X', 11, xid)
950          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
951          iret = nf_close(ncid)
952          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
953          end
954    EOF
955        echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
956        cat genmake_tnc.F >> genmake_tnc.log
957        echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
958        RET_CPP=f
959        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
960        echo "$COMM" >> genmake_tnc.log
961        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
962        if test "x$RET_CPP" = xf ; then
963            echo "  WARNING: CPP failed to pre-process the netcdf test." \
964                >> genmake_tnc.log
965            echo "    Please check that \$INCLUDES is properly set." \
966                >> genmake_tnc.log
967        fi
968        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
969        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
970        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
971            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
972        RET_COMPILE=$?
973        cat genmake_tnc.log >> $LOGFILE
974    
975        #EH3  Remove test program execution for machines that either disallow
976        #EH3  execution or cannot support it (eg. cross-compilers)
977        #EH3
978        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
979        #EH3 RETVAL=$?
980        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
981    
982        if test "x$RET_COMPILE" = x0 ; then
983            HAVE_NETCDF=t
984            echo "check_netcdf: successful" >> $LOGFILE
985        else
986            # try again with "-lnetcdf" added to the libs
987            echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
988            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
989            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
990            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
991            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
992                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
993                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
994            RET_COMPILE=$?
995            echo >> $LOGFILE
996            cat genmake_tnc.log >> $LOGFILE
997            if test "x$RET_COMPILE" = x0 ; then
998                LIBS="$LIBS -lnetcdf"
999                HAVE_NETCDF=t
1000                echo "check_netcdf: successful" >> $LOGFILE
1001            else
1002            # try again with "-lnetcdff" added to the libs
1003                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1004                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1005                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1006                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1007                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1008                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1009                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1010                RET_COMPILE=$?
1011                echo >> $LOGFILE
1012                cat genmake_tnc.log >> $LOGFILE
1013                if test "x$RET_COMPILE" = x0 ; then
1014                    LIBS="$LIBS -lnetcdff -lnetcdf"
1015                    HAVE_NETCDF=t
1016                    echo "check_netcdf: successful" >> $LOGFILE
1017                fi
1018            fi
1019        fi
1020        rm -f genmake_tnc*
1021        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1022    }
1023    
1024    
1025    ###############################################################################
1026    #   Sequential part of script starts here
1027    ###############################################################################
1028    
1029  #  Set defaults here  #  Set defaults here
1030  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 288  PLATFORM= Line 1033  PLATFORM=
1033  LN=  LN=
1034  S64=  S64=
1035  KPP=  KPP=
1036  FC=  #FC=
1037    #CC=gcc
1038    #CPP=
1039  LINK=  LINK=
1040  DEFINES="-DWORDLENGTH=4"  DEFINES=
1041  PACKAGES=  PACKAGES=
1042  ENABLE=  ENABLE=
1043  DISABLE=  DISABLE=
1044  MAKEFILE=  # MAKEFILE=
1045  MAKEDEPEND=  # MAKEDEPEND=
1046  PDEPEND=  PKG_DEPEND=
1047  DUMPSTATE=t  PKG_GROUPS=
1048  PDEFAULT=  DUMPSTATE=f
1049  OPTFILE=  OPTFILE=
1050  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1051  FFLAGS=  FFLAGS=
1052  FOPTIM=  FOPTIM=
1053    FEXTRAFLAGS=
1054    USE_EXTENDED_SRC=
1055    EXTENDED_SRC_FLAG=
1056  CFLAGS=  CFLAGS=
1057  KFLAGS1=  KFLAGS1=
1058  KFLAGS2=  KFLAGS2=
1059    #LDADD=
1060  LIBS=  LIBS=
1061  KPPFILES=  KPPFILES=
1062  NOOPTFILES=  NOOPTFILES=
1063  NOOPTFLAGS=  NOOPTFLAGS=
1064    MPI=
1065    MPIPATH=
1066    OMP=
1067    OMPFLAG=
1068    USE_R4=
1069    TS=
1070    PAPIS=
1071    PCLS=
1072    FOOLAD=
1073    PAPI=
1074    PCL=
1075    HPMT=
1076    GSL=
1077    DEVEL=
1078    HAVE_TEST_L=
1079    
1080    # DEFINES checked by test compilation or command-line
1081    HAVE_SYSTEM=
1082    HAVE_FDATE=
1083    FC_NAMEMANGLE=
1084    HAVE_CLOC=
1085    # HAVE_SETRLSTK=
1086    HAVE_STAT=
1087    HAVE_NETCDF=
1088    HAVE_ETIME=
1089    IGNORE_TIME=
1090    
1091  MODS=  MODS=
1092  TOOLSDIR=  TOOLSDIR=
1093  SOURCEDIRS=  SOURCEDIRS=
1094  INCLUDEDIRS=  INCLUDEDIRS=
1095  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
1096    
1097    G2ARGS=
1098    BASH=
1099  PWD=`pwd`  PWD=`pwd`
1100  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1101  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1102  THISHOSTNAME=`hostname`  EMBED_SRC=
1103    THISHOST=`hostname`
1104  THISCWD=`pwd`  THISCWD=`pwd`
1105  THISDATE=`date`  THISDATE=`date`
1106    THISUSER=`echo $USER`
1107    THISVER=
1108  MACHINE=`uname -a`  MACHINE=`uname -a`
1109  EXECUTABLE=  EXECUTABLE=
1110  EXEHOOK=  EXEHOOK=
# Line 332  IEEE= Line 1114  IEEE=
1114  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1115      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1116  fi  fi
1117    FS=
1118    FS90=
1119    
1120  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1121  AD_OPTFILE=  AD_OPTFILE=
1122    TAF=
1123    AD_TAF_FLAGS=
1124    FTL_TAF_FLAGS=
1125    SVD_TAF_FLAGS=
1126    TAF_EXTRA=
1127    TAMC=
1128    AD_TAMC_FLAGS=
1129    FTL_TAF_FLAGS=
1130    SVD_TAMC_FLAGS=
1131    TAMC_EXTRA=
1132    
1133  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1134  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS MAKEFILE MAKEDEPEND PLATFORM ROOTDIR MODS DISABLE ENABLE"
1135  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CC IEEE USE_R4 TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"
1136    
1137  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1138  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1139  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1140  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD THISHOST THISUSER THISDATE THISVER MACHINE"
1141  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1142    gm_s7="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME"
1143    
1144  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1145  gm_s7="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF DIFF_FLAGS AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1146  gm_s8="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1147  gm_s9=""  gm_s12="TAF_EXTRA TAMC_EXTRA"
1148    
1149  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
1150    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1151    
1152    cat <<EOF
1153    
1154    GENMAKE :
1155    
1156    A program for GENerating MAKEfiles for the MITgcm project.
1157       For a quick list of options, use "genmake2 -h"
1158    or for more detail see the Developer's HOWTO manual at:
1159       http://mitgcm.org/public/docs.html
1160    
1161    EOF
1162    
1163    LOGFILE="genmake.log"
1164    #- clean-up previous genmake logfiles:
1165    rm -f genmake_state genmake_*optfile $LOGFILE
1166    
 echo  
1167  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1168  gm_local="genmake_local"  gm_local="genmake_local"
1169  for i in . $MODS ; do  printf "  getting local config information:  "
1170      if test -r $i/$gm_local ; then  if test -f $gm_local ; then
         source $i/$gm_local  
         break  
     fi  
 done  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
1171      echo "using $gm_local"      echo "using $gm_local"
1172      source $gm_local      . $gm_local
1173      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
1174      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
1175  else  else
1176      echo "none found"      echo "none found"
1177  fi  fi
1178    
1179  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1180  #parse_options  #parse_options
1181  ac_prev=  ac_prev=
1182  for ac_option ; do  for ac_option in "$@" ; do
1183    
1184        G2ARGS="$G2ARGS \"$ac_option\""
1185    
1186      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1187      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 393  for ac_option ; do Line 1189  for ac_option ; do
1189          ac_prev=          ac_prev=
1190          continue          continue
1191      fi      fi
1192        
1193      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1194        
1195      case $ac_option in      case $ac_option in
1196                    
1197          -help | --help | -h | --h)          -help | --help | -h | --h)
# Line 408  for ac_option ; do Line 1204  for ac_option ; do
1204          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1205              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1206                    
1207          -adoptfile | --adoptfile | -ad | --ad)          -adoptfile | --adoptfile | -adof | --adof)
1208              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1209          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1210              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1211                    
1212          -pdepend | --pdepend)          -pdepend | --pdepend)
1213              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1214          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1215              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1216                    
1217          -pdefault | --pdefault)          -pgroups | --pgroups)
1218              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1219          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1220              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1221                    
1222          -make | --make | -m | --m)          -make | --make | -m | --m)
1223              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1224          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1225              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1226                    
1227            -bash | --bash)
1228                ac_prev=BASH ;;
1229            -bash=* | --bash=*)
1230                BASH=$ac_optarg ;;
1231            
1232            -makedepend | --makedepend | -md | --md)
1233                ac_prev=MAKEDEPEND ;;
1234            -makedepend=* | --makedepend=* | -md=* | --md=*)
1235                MAKEDEPEND=$ac_optarg ;;
1236            
1237          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
1238              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1239          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
1240              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1241                    
1242          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1243              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
1244          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
1245              PLATFORM=$ac_optarg ;;              echo
1246                usage
1247                ;;
1248                    
1249          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1250              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 463  for ac_option ; do Line 1271  for ac_option ; do
1271          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
1272              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
1273    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
1274  #           -cpp | --cpp)  #           -cpp | --cpp)
1275  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1276  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1277  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1278                        
1279            -cc | --cc)
1280                ac_prev=CC ;;
1281            -cc=* | --cc=*)
1282                CC=$ac_optarg ;;
1283            
1284          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1285              ac_prev=FC ;;              ac_prev=FC ;;
1286          -fc=* | --fc=*)          -fc=* | --fc=*)
1287              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1288                    
1289            -fs | --fs)
1290                ac_prev=FS ;;
1291            -fs=* | --fs=*)
1292                FS=$ac_optarg ;;
1293            
1294            -fs90 | --fs90)
1295                ac_prev=FS90 ;;
1296            -fs90=* | --fs90=*)
1297                FS90=$ac_optarg ;;
1298            
1299          -ieee | --ieee)          -ieee | --ieee)
1300              IEEE=true ;;              IEEE=true ;;
1301          -noieee | --noieee)          -noieee | --noieee)
1302              IEEE= ;;              IEEE= ;;
1303            
1304            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1305                USE_R4=true ;;
1306    
1307            -ts | --ts)
1308                TS=true ;;
1309            -papis | --papis)
1310                PAPIS=true ;;
1311            -pcls | --pcls)
1312                PCLS=true ;;
1313            -foolad | --foolad)
1314                FOOLAD=true ;;
1315            -papi | --papi)
1316                PAPI=true ;;
1317            -pcl | --pcl)
1318                PCL=true ;;
1319            -hpmt | --hpmt)
1320                HPMT=true ;;
1321    
1322            -gsl | --gsl)
1323                GSL=true ;;
1324    
1325            -devel | --devel)
1326                DEVEL=true ;;
1327    
1328          -mpi | --mpi)          -mpi | --mpi)
1329              MPI=true ;;              MPI=true ;;
1330          -nompi | --nompi)          -mpi=* | --mpi=*)
1331              MPI= ;;              MPIPATH=$ac_optarg
1332                MPI=true ;;
1333                    
1334          -jam | --jam)          -omp | --omp)
1335              JAM=1 ;;              OMP=true ;;
1336          -nojam | --nojam)          -omp=* | --omp=*)
1337              JAM=0 ;;              OMPFLAG=$ac_optarg
1338                OMP=true ;;
1339                    
1340          -ds | --ds)          -ds | --ds)
1341              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1342                    
1343            -taf_extra | --taf_extra)
1344                ac_prev=TAF_EXTRA ;;
1345            -taf_extra=* | --taf_extra=*)
1346                TAF_EXTRA=$ac_optarg ;;
1347    
1348            -tamc_extra | --tamc_extra)
1349                ac_prev=TAMC_EXTRA ;;
1350            -tamc_extra=* | --tamc_extra=*)
1351                TAMC_EXTRA=$ac_optarg ;;
1352            
1353            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1354                IGNORE_TIME="-DIGNORE_TIME" ;;
1355    
1356            -es | --es | -embed-source | --embed-source)
1357                EMBED_SRC=t ;;
1358    
1359          -*)          -*)
1360              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1361              usage              usage
# Line 507  for ac_option ; do Line 1367  for ac_option ; do
1367              ;;              ;;
1368                    
1369      esac      esac
1370        
1371  done  done
1372    
1373  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1374      echo      echo
1375      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1376      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1377      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1378      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/devel_HOWTO/"
1379        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1380        echo "WARNING: ignore \"./.genmakerc\" and continue."
1381      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1382  fi  fi
1383    
1384    #  Find the MITgcm ${ROOTDIR}
1385  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1386      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1387        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1388          ROOTDIR=".."          ROOTDIR=".."
1389      else      else
1390          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1391              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1392                  ROOTDIR=$d                  ROOTDIR=$d
1393                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1394                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1395                  break                  break
1396              fi              fi
# Line 547  if test ! -d ${ROOTDIR} ; then Line 1408  if test ! -d ${ROOTDIR} ; then
1408      exit 1      exit 1
1409  fi  fi
1410    
1411    #  Find the MITgcm ${THISVER}
1412    version_file="${ROOTDIR}/doc/tag-index"
1413    if test -f $version_file ; then
1414        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1415    #-  remove ./BUILD_INFO.h file if older than version_file
1416        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1417            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1418            rm -f ./BUILD_INFO.h
1419        fi
1420    fi
1421    
1422    if test "x$MAKEFILE" = x ; then
1423        MAKEFILE="Makefile"
1424    fi
1425    
1426  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1427  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1428      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1429          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1430          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1431          find_possible_configs          find_possible_optfile
1432      else      else
1433          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1434      fi      fi
# Line 560  fi Line 1436  fi
1436  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
1437      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1438          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
1439          source "$OPTFILE"          . "$OPTFILE"
1440          RETVAL=$?          RETVAL=$?
1441          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1442              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1443              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1444              exit 1              exit 1
1445          fi          fi
1446          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1447              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1448          fi          fi
1449      else      else
# Line 587  fi Line 1463  fi
1463  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
1464      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1465          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1466          source "$AD_OPTFILE"          . "$AD_OPTFILE"
1467          RETVAL=$?          RETVAL=$?
1468          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1469              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1470              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1471              exit 1              exit 1
1472          fi          fi
1473          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1474              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1475          fi          fi
1476      else      else
# Line 603  if test "x${AD_OPTFILE}" != xNONE ; then Line 1479  if test "x${AD_OPTFILE}" != xNONE ; then
1479      fi      fi
1480  fi  fi
1481    
1482  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  #====================================================================
1483  #  and abort!  #  Set default values if not set by the optfile
1484    #
1485    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1486    #  either set defaults or complain and abort!
1487    if test ! "x$BASH" = x ; then
1488        # add a trailing space so that it works within the Makefile syntax (see below)
1489        BASH="$BASH "
1490    fi
1491  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1492      cat <<EOF 1>&2      cat <<EOF 1>&2
1493    
# Line 615  Error: no Fortran compiler: please speci Line 1498  Error: no Fortran compiler: please speci
1498  EOF  EOF
1499      exit 1      exit 1
1500  fi  fi
1501    
1502    if test "x$CC" = x ; then
1503        look_for_C_compilers
1504    fi
1505    
1506  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1507      LINK=$FC      LINK=$FC
1508  fi  fi
1509    if test "x$MAKE" = x ; then
1510        MAKE="make"
1511    fi
1512  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1513      CPP="cpp"      CPP="cpp -traditional -P"
1514  fi  fi
1515    #EH3 === UGLY ===
1516    #  The following is an ugly little hack to check for $CPP in /lib/ and
1517    #  it should eventually be replaced with a more general function that
1518    #  searches a combo of the user's path and a list of "usual suspects"
1519    #  to find the correct location for binaries such as $CPP.
1520    for i in " " "/lib/" ; do
1521        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1522    done
1523    #EH3 === UGLY ===
1524  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1525  RETVAL=$?  RETVAL=$?
1526  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 630  Error: C pre-processor "$CPP" failed the Line 1530  Error: C pre-processor "$CPP" failed the
1530    
1531    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1532    2) the "./genmake_local" file    2) the "./genmake_local" file
1533      3) with the CPP environment variable
1534    
1535  EOF  EOF
1536      exit 1      exit 1
1537  else  else
1538      rm -f test_cpp      rm -f test_cpp
1539  fi  fi
1540  if test "x$MAKEDEPEND" = x ; then  
1541      MAKEDEPEND=makedepend  look_for_makedepend
1542    
1543    #  Check that soft-link command is set and usable
1544    if test "x$LN" = x ; then
1545        LN="ln -s"
1546    fi
1547    echo "test" > genmake_test_ln
1548    $LN genmake_test_ln genmake_tlink
1549    RETVAL=$?
1550    if test "x$RETVAL" != x0 ; then
1551        cat <<EOF 1>&2
1552    
1553    Error: The command "$LN" failed -- please specify a working soft-link
1554      command in the optfile.
1555    
1556    EOF
1557        exit 1
1558    fi
1559    test -L genmake_tlink > /dev/null 2>&1
1560    RETVAL=$?
1561    if test "x$RETVAL" = x0 ; then
1562        HAVE_TEST_L=t
1563    fi
1564    rm -f genmake_test_ln genmake_tlink
1565    
1566    #  Check for broken *.F/*.f handling and fix if possible
1567    check_for_broken_Ff
1568    
1569    if test ! "x$MPI" = x ; then
1570          echo "  Turning on MPI cpp macros"
1571          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1572    fi
1573    if test ! "x$OMP" = x ; then
1574          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1575          FFLAGS="$FFLAGS $OMPFLAG"
1576          F90FLAGS="$F90FLAGS $OMPFLAG"
1577          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1578    fi
1579    
1580    if test ! "x$USE_R4" = x ; then
1581          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1582          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1583    fi
1584    
1585    if test ! "x$TS" = x ; then
1586          echo "  Turning on timing per timestep"
1587          if test ! "x$FOOLAD" = x ; then
1588                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1589          else
1590                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1591          fi
1592          PACKAGES="$PACKAGES showflops"
1593    fi
1594    if test ! "x$PAPIS" = x ; then
1595          echo "  Turning on PAPI flop summary per timestep"
1596          echo "  Please make sure PAPIINC, PAPILIB are defined"
1597          if test ! "x$FOOLAD" = x ; then
1598                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1599          else
1600                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1601          fi
1602          INCLUDES="$INCLUDES $PAPIINC"
1603          LIBS="$LIBS $PAPILIB"
1604          PACKAGES="$PACKAGES showflops"
1605    fi
1606    if test ! "x$PCLS" = x ; then
1607          echo "  Turning on PCL counter summary per timestep"
1608          echo "  Please make sure PCLINC, PCLLIB are defined"
1609          if test ! "x$FOOLAD" = x ; then
1610                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1611          else
1612                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1613          fi
1614          INCLUDES="$INCLUDES $PCLINC"
1615          LIBS="$LIBS $PCLLIB"
1616          PACKAGES="$PACKAGES showflops"
1617    fi
1618    if test ! "x$PAPI" = x ; then
1619          if test ! "x$PAPIS" = x ; then
1620              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1621              echo "  Sticking with PAPI flop summary per timestep!"
1622          else
1623              echo "  Turning on performance analysis with PAPI"
1624              echo "  Please make sure PAPIINC, PAPILIB are defined"
1625              DEFINES="$DEFINES -DUSE_PAPI"
1626              INCLUDES="$INCLUDES $PAPIINC"
1627              LIBS="$LIBS $PAPILIB"
1628          fi
1629    fi
1630    if test ! "x$PCL" = x ; then
1631          if test ! "x$PCLS" = x ; then
1632              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1633              echo "  Sticking with PCL flop summary per timestep!"
1634          else
1635              echo "  Turning on performance analysis with PCL"
1636              echo "  Please make sure PCLINC, PCLLIB are defined"
1637              DEFINES="$DEFINES -DUSE_PCL"
1638              INCLUDES="$INCLUDES $PCLINC"
1639              LIBS="$LIBS $PCLLIB"
1640          fi
1641    fi
1642    if test ! "x$HPMT" = x ; then
1643          if test ! "x$PAPI" = x ; then
1644              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1645              echo "  Sticking with PAPI!"
1646          else if test ! "x$PCL" = x ; then
1647              echo "  PCL and the HPM Toolkit cannot co-exist!"
1648              echo "  Sticking with PCL!"
1649          else
1650              echo "  Turning on performance analysis with the HPM Toolkit"
1651              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1652              DEFINES="$DEFINES -DUSE_LIBHPM"
1653              INCLUDES="$INCLUDES $HPMTINC"
1654              LIBS="$LIBS $HPMTLIB"
1655          fi
1656          fi
1657    fi
1658    if test ! "x$GSL" = x ; then
1659          echo "  Turning on use of GSL to control floating point calculations"
1660          echo "  Please make sure GSLINC, GSLLIB are defined"
1661          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1662          INCLUDES="$INCLUDES $GSLINC"
1663          LIBS="$LIBS $GSLLIB"
1664    fi
1665    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1666    if test ! "x$USE_EXTENDED_SRC" = x ; then
1667          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1668          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1669    fi
1670    
1671    printf "\n===  Checking system libraries  ===\n"
1672    printf "  Do we have the system() command using $FC...  "
1673    cat > genmake_tcomp.$FS <<EOF
1674          program hello
1675          call system('echo hi')
1676          end
1677    EOF
1678    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1679    RETVAL=$?
1680    if test "x$RETVAL" = x0 ; then
1681        HAVE_SYSTEM=t
1682        DEFINES="$DEFINES -DHAVE_SYSTEM"
1683        echo "yes"
1684    else
1685        HAVE_SYSTEM=
1686        echo "no"
1687    fi
1688    rm -f genmake_tcomp*
1689    
1690    printf "  Do we have the fdate() command using $FC...  "
1691    cat > genmake_tcomp.$FS <<EOF
1692          program hello
1693          CHARACTER*(128) string
1694          string = ' '
1695          call fdate( string )
1696          print *, string
1697          end
1698    EOF
1699    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1700    RETVAL=$?
1701    if test "x$RETVAL" = x0 ; then
1702        HAVE_FDATE=t
1703        DEFINES="$DEFINES -DHAVE_FDATE"
1704        echo "yes"
1705    else
1706        HAVE_FDATE=
1707        echo "no"
1708    fi
1709    rm -f genmake_tcomp*
1710    
1711    printf "  Do we have the etime() command using $FC...  "
1712    cat > genmake_tcomp.$FS <<EOF
1713          program hello
1714          REAL*4 ACTUAL, TARRAY(2)
1715          EXTERNAL ETIME
1716          REAL*4 ETIME
1717          actual = etime( tarray )
1718          print *, tarray
1719          end
1720    EOF
1721    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1722    RETVAL=$?
1723    if test "x$RETVAL" = x0 ; then
1724        HAVE_ETIME=t
1725        DEFINES="$DEFINES -DHAVE_ETIME"
1726        echo "yes"
1727    else
1728        HAVE_ETIME=
1729        echo "no"
1730    fi
1731    rm -f genmake_tcomp*
1732    
1733    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1734    check_HAVE_CLOC
1735    if test "x$HAVE_CLOC" != x ; then
1736        echo "yes"
1737    else
1738        echo "no"
1739        if test "x$EMBED_SRC" = xt ; then
1740            echo "    WARNING: you requested file embedding but it has"
1741            echo "      been disabled since C code cannot be called"
1742            EMBED_SRC=
1743        fi
1744    fi
1745    rm -f genmake_t*
1746    
1747    printf "  Can we unlimit the stack size using $FC...  "
1748    check_HAVE_SETRLSTK
1749    if test "x$HAVE_SETRLSTK" = xt ; then
1750        echo "yes"
1751    else
1752        echo "no"
1753    fi
1754    rm -f genmake_t*
1755    
1756    printf "  Can we register a signal handler using $FC...  "
1757    check_HAVE_SIGREG
1758    if test "x$HAVE_SIGREG" = xt ; then
1759        echo "yes"
1760    else
1761        echo "no"
1762    fi
1763    rm -f genmake_t*
1764    
1765    printf "  Can we use stat() through C calls...  "
1766    check_HAVE_STAT
1767    if test "x$HAVE_STAT" != x ; then
1768        echo "yes"
1769    else
1770        echo "no"
1771    fi
1772    rm -f genmake_t*
1773    
1774    printf "  Can we create NetCDF-enabled binaries...  "
1775    check_netcdf_libs
1776    if test "x$HAVE_NETCDF" != x ; then
1777        echo "yes"
1778    else
1779        echo "no"
1780    fi
1781    DEFINES="$DEFINES $IGNORE_TIME"
1782    
1783    if test "x$EMBED_SRC" = xt ; then
1784        build_embed_encode
1785    fi
1786    if test "x$EMBED_SRC" = xt ; then
1787        ENABLE="$ENABLE embed_files"
1788  fi  fi
1789    
1790  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1791  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1792  for d in $MODS ; do  for d in $MODS ; do
1793      if test ! -d $d ; then      if test ! -d $d ; then
1794          echo          echo
1795          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1796          exit 1          exit 1
1797      else      else
1798          echo -n " $d"          printf "$d "
1799          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1800          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1801      fi      fi
1802  done  done
1803  echo  echo
1804    
1805  if test "x$MAKEFILE" = x ; then  #if test "x${PLATFORM}" = x ; then
1806      MAKEFILE="Makefile"  #    PLATFORM=$p_PLATFORM
1807  fi  #fi
 if test "x${PLATFORM}" = x ; then  
     PLATFORM=$p_PLATFORM  
 fi  
1808    
1809  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1810      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1811        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1812          EXEDIR=../exe          EXEDIR=../exe
1813      else      else
1814          EXEDIR=.          EXEDIR=.
# Line 674  if test ! -d ${EXEDIR} ; then Line 1819  if test ! -d ${EXEDIR} ; then
1819      exit 1      exit 1
1820  fi  fi
1821    
1822  if test "x${TOOLSDIR}" = x ; then  if test "x${TOOLSDIR}" = x ; then
1823      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1824  fi  fi
1825  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1826      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1827      exit 1      exit 1
1828    fi
1829    if test "x$S64" = x ; then
1830        echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1831        RETVAL=$?
1832        if test "x${RETVAL}" = x0 ; then
1833            S64='$(TOOLSDIR)/set64bitConst.sh'
1834        else
1835            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1836            RETVAL=$?
1837            if test "x${RETVAL}" = x0 ; then
1838                S64='$(TOOLSDIR)/set64bitConst.csh'
1839            else
1840                cat <<EOF
1841    
1842    ERROR: neither of the two default scripts:
1843    
1844        ${TOOLSDIR}/set64bitConst.sh
1845        ${TOOLSDIR}/set64bitConst.csh
1846    
1847      are working so please check paths or specify (with \$S64) a
1848      working version of this script.
1849    
1850    EOF
1851                exit 1
1852            fi
1853        fi
1854    fi
1855    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1856    
1857    EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1858    
1859    #  Set Standard Code Directories:
1860    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1861        STANDARDDIRS="eesupp model"
1862  fi  fi
1863  if test "x$S64" = x ; then  #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
1864      S64='$(TOOLSDIR)/set64bitConst.sh'  echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
1865    ckM=$?
1866    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
1867    ckE=$?
1868    if test $ckM = 0 -a $ckE = 1 ; then
1869        STANDARDDIRS="$STANDARDDIRS eesupp"
1870  fi  fi
1871    
 EXECUTABLE=${EXECUTABLE:-mitgcmuv}  
   
1872  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
1873  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
1874  #  they appear as regular source code  #  they appear as regular source code
1875  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1876      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1877      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
1878        ) > make_eesupp.errors 2>&1
1879      RETVAL=$?      RETVAL=$?
1880      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1881          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1882      else      else
1883          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1884          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1885          exit 1          exit 1
1886      fi      fi
1887  fi  fi
1888    
1889    #same for pkg/exch2 and pkg/regrid
1890    for pdir in exch2 regrid ; do
1891        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1892            echo "  Making source files in pkg/${pdir} from templates"
1893            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
1894            ) > make_${pdir}.errors 2>&1
1895            RETVAL=$?
1896            if test "x${RETVAL}" = x0 ; then
1897                rm -f make_${pdir}.errors
1898            else
1899                echo "Error: problem encountered while building source files in pkg/${pdir}:"
1900                cat make_${pdir}.errors 1>&2
1901                exit 1
1902            fi
1903        fi
1904    done
1905    
1906  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1907  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
1908      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
1909      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
1910          PDEPEND=$tmp  fi
1911      else  if  test "x${PKG_DEPEND}" = x ; then
1912          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
1913          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
1914  else  else
1915      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
1916          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
1917          exit 1          exit 1
1918      fi      fi
1919        echo "  getting package dependency info from  $PKG_DEPEND"
1920    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
1921        get_pdepend_list $PKG_DEPEND
1922  fi  fi
1923  echo "  getting package dependency info from  $PDEPEND"  
1924  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
1925  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
1926  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
1927      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
1928      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
1929  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
1930  if test ! "x${RETVAL}" = x0 ; then  fi
1931      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
1932      exit 1          echo "Warning:  No package groups information was specified."
1933            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
1934    else
1935        if test ! -r ${PKG_GROUPS} ; then
1936            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
1937            exit 1
1938        fi
1939        echo "  getting package groups info from      $PKG_GROUPS"
1940  fi  fi
 source ./.pd_tmp  
 rm -f ./.pd_tmp  
1941    
1942  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
1943  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
1944  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
1945  echo  -n "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
1946      for i in "." $MODS ; do      for i in "." $MODS ; do
1947          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
1948                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
1949                  break                  break
1950          fi          fi
1951      done      done
1952  fi  fi
1953  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
1954      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
1955  fi      if test "x${PKG_GROUPS}" = x ; then
1956  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
1957      echo "default packages file disabled"          exit 1
1958        fi
1959  else  else
1960      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
1961          echo ""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
1962          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          exit 1
1963      else      else
1964          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
1965          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1966          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1967          RETVAL=$?          RETVAL=$?
1968          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1969              echo -n "Error: can't parse default package list "              printf "Error: can't parse package list "
1970              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
1971              exit 1              exit 1
1972          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         expand_pkg_groups  
         echo "    after group expansion packages are:  $PACKAGES"  
1973      fi      fi
1974  fi  fi
1975    for i in $pkg_list ; do
1976        PACKAGES="$PACKAGES $i"
1977    done
1978    echo     "    before group expansion packages are:$PACKAGES"
1979    if test "x${PKG_GROUPS}" != x ; then
1980        RET=1
1981        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1982        echo "    after group expansion packages are: $PACKAGES"
1983    fi
1984    
1985  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1986    echo "" > ./.tmp_pack
1987    for i in $PACKAGES ; do
1988        echo $i >> ./.tmp_pack
1989    done
1990    for i in `grep  "-" ./.tmp_pack` ; do
1991        j=`echo $i | sed 's/[-]//'`
1992        DISABLE="$DISABLE $j"
1993    done
1994  pack=  pack=
1995  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1996      addit="t"      addit="t"
# Line 789  PACKAGES="$pack" Line 2007  PACKAGES="$pack"
2007  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2008  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
2009  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2010    # Test if each explicitly referenced package exists
2011  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2012      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
2013          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""      if test ! -d "$ROOTDIR/pkg/$j" ; then
2014          exit 1          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2015            exit 1
2016      fi      fi
2017      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2018  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
2019  PACKAGES=  PACKAGES=
2020  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
2021      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2022  done  done
2023  echo "    packages are:  $PACKAGES"  rm -f ./.tmp_pack
2024    echo "    packages are: $PACKAGES"
2025    
2026    #  Check for package MNC: if NetCDF is available, then build the MNC
2027    #  template files ; otherwise, delete mnc from the list of packages.
2028    echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2029    mnc_in=$?
2030    if test "x$HAVE_NETCDF" != xt ; then
2031        if test "x$mnc_in" = x0 ; then
2032            cat <<EOF
2033    *********************************************************************
2034    WARNING: the "mnc" package was enabled but tests failed to compile
2035      NetCDF applications.  Please check that:
2036    
2037      1) NetCDF is correctly installed for this compiler and
2038      2) the LIBS variable (within the "optfile") specifies the correct
2039           NetCDF library to link against.
2040    
2041      Due to this failure, the "mnc" package is now DISABLED.
2042    *********************************************************************
2043    EOF
2044            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2045            DISABLE="$DISABLE mnc"
2046        else
2047        #  this prevent to add mnc (due to pdepend rules) if not available
2048            DISABLE="$DISABLE mnc"
2049        fi
2050    else
2051        # we have NetCDF, we try to build MNC template files
2052        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2053        RETVAL=$?
2054        if test "x${RETVAL}" = x0 ; then
2055            rm -f make_mnc.errors
2056        else
2057            echo "Error: problem encountered while building source files in pkg/mnc:"
2058            cat make_mnc.errors 1>&2
2059            if test "x$mnc_in" = x0 ; then
2060                exit 1
2061            else
2062                DISABLE="$DISABLE mnc"
2063            fi
2064        fi
2065    fi
2066    
2067    #  Check for package PROFILES: if NetCDF is not available,
2068    #  then delete profiles from the list of available packages.
2069    if test "x$HAVE_NETCDF" != xt ; then
2070        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2071        RETVAL=$?
2072        if test "x$RETVAL" = x0 ; then
2073            cat <<EOF
2074    *********************************************************************
2075    WARNING: the "profiles" package was enabled but tests failed to
2076      compile NetCDF applications.  Please check that:
2077    
2078      1) NetCDF is correctly installed for this compiler and
2079      2) the LIBS variable (within the "optfile") specifies the correct
2080           NetCDF library to link against.
2081    
2082      Due to this failure, the "profiles" package is now DISABLED.
2083    *********************************************************************
2084    EOF
2085            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2086            DISABLE="$DISABLE profiles"
2087        else
2088        #  this prevent to add profiles (due to pdepend rules) if not available
2089            DISABLE="$DISABLE profiles"
2090        fi
2091    fi
2092    
2093  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2094  ck=    echo "  applying package dependency rules"
2095  while test "x$ck" != xtt ; do    ck=
2096      while test "x$ck" != xtt ; do
2097      i=0      i=0
2098      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2099      rtot=$nname      rtot=$nname
2100      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2101    
2102          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2103          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 822  while test "x$ck" != xtt ; do Line 2109  while test "x$ck" != xtt ; do
2109                  pin="t"                  pin="t"
2110              fi              fi
2111          done          done
2112            #  or in the current $STANDARDDIRS list?
2113            for p in $STANDARDDIRS ; do
2114                if test "x$p" = "x$pname" ; then pin="t" ; fi
2115            done
2116    
2117          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2118          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 844  while test "x$ck" != xtt ; do Line 2135  while test "x$ck" != xtt ; do
2135    
2136          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2137          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2138                #echo "   " $pname ": need to add :" $dname
2139              in_dis="f"              in_dis="f"
2140              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2141                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 864  while test "x$ck" != xtt ; do Line 2156  while test "x$ck" != xtt ; do
2156          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2157          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2158              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2159              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2160              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2161              exit 1              exit 1
2162          fi          fi
2163          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2164            #i=$(( $i + 1 ))
2165      done      done
2166      ck=$ck"t"      ck=$ck"t"
2167  done    done
2168  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2169    fi
2170  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2171      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2172      if test -d $adr ; then      if test -d $adr ; then
# Line 887  for i in $PACKAGES ; do Line 2181  for i in $PACKAGES ; do
2181      fi      fi
2182  done  done
2183    
 #  This is compatible with the old genmake.  The "DISABLE_*" flags  
 #  need to be replaced by the "ALLOW_*" flags set below.  
 #  
 # echo -n "  Setting package-specific CPP flags:  "  
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
2184  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2185  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2186  cat <<EOF >$PACKAGES_DOT_H".tmp"  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2187  C=== GENMAKE v2 ===  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
   
 C  Packages disabled by genmake:  
 EOF  
 #  The following UGLY HACK sets multiple "#undef"s and it needs to go  
 #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  
2188  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2189  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2190  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2191  all_pack=  all_pack=
2192    DISABLED_PACKAGES=
2193  for n in $names ; do  for n in $names ; do
2194      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2195          has_pack="f"          has_pack="f"
# Line 936  for n in $names ; do Line 2200  for n in $names ; do
2200              fi              fi
2201          done          done
2202          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2203              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2204              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
 #           DEFINES="$DEFINES -U$undef"  
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
2205          fi          fi
2206      fi      fi
2207  done  done
2208  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2209  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2210      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2211      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2212  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2213    
2214  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2215      case $i in      case $i in
2216          aim_v23)          aim_v23)
2217              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2218              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
2219              ;;              ;;
2220      esac      esac
2221  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2222    
2223  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
2224    
2225  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2226  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2227  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" != x ; then
2228      STANDARDDIRS="eesupp model"      for d in $STANDARDDIRS ; do
2229            adr="$ROOTDIR/$d/src"
2230            if test ! -d $adr ; then
2231                echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2232                echo "  is correct and that you correctly specified the STANDARDDIRS option"
2233                exit 1
2234            else
2235                SOURCEDIRS="$SOURCEDIRS $adr"
2236            fi
2237            adr="$ROOTDIR/$d/inc"
2238            if test ! -d $adr ; then
2239                echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2240                echo "  is correct and that you correctly specified the STANDARDDIRS option"
2241                exit 1
2242            else
2243                INCLUDEDIRS="$INCLUDEDIRS $adr"
2244            fi
2245        done
2246  fi  fi
 for d in $STANDARDDIRS ; do  
     adr="$ROOTDIR/$d/src"  
     if test ! -d $adr ; then  
         echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""  
         echo "  is correct and that you correctly specified the STANDARDDIRS option"  
         exit 1  
     else  
         SOURCEDIRS="$SOURCEDIRS $adr"  
     fi  
     adr="$ROOTDIR/$d/inc"  
     if test ! -d $adr ; then  
         echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""  
         echo "  is correct and that you correctly specified the STANDARDDIRS option"  
         exit 1  
     else  
         INCLUDEDIRS="$INCLUDEDIRS $adr"  
     fi  
 done  
2247    
2248  echo " Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2249  echo " of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
2250  CPP_OPTIONS=  CPP_OPTIONS=
2251    CPP_EEOPTIONS=
2252  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
2253    names=`ls -1 "$ROOTDIR/pkg"`
2254  for i in $spaths ; do  for i in $spaths ; do
2255      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
2256      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
2257          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2258          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2259          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2260            for n in $names ; do
2261                test_for_package_in_cpp_options $CPP_OPTIONS $n
2262            done
2263        fi
2264        try="$i/CPP_EEOPTIONS.h"
2265        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2266            echo "    found CPP_EEOPTIONS=\"$try\""
2267            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2268    #**** not yet enabled ****
2269    #        test_for_mpi_in_cpp_eeoptions $try
2270    #**** not yet enabled ****
2271            CPP_EEOPTIONS="$try"
2272      fi      fi
2273  done  done
2274  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
2275      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2276      exit 1      exit 1
2277  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
2278    
2279  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2280  #  compiler.  #  compiler.
2281  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2282      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2283  fi  fi
2284  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2285    touch adSrcFiles.tmp
2286  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2287      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2288      for j in $list_files ; do      for j in $list_files ; do
2289          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2290      done      done
2291  done  done
2292    if test ! "x"$FS = "x.f" ; then
2293  cat <<EOF > adjoint_sed      cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2294  s/call adopen(/call adopen ( mythid,\\      mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2295       \&           /g  fi
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
2296    
2297  echo  echo
2298  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2299  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2300  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2301      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2302          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2303      fi      fi
2304  done  done
2305    
2306    if test ! "x$DIVA" = x ; then
2307        echo "  Creating the pseudo-MPI include directory"
2308        INCLUDES="-I./mpi_headers $INCLUDES"
2309        rm -rf ./mpi_headers
2310        mkdir -p ./mpi_headers
2311    
2312        if test "x$MPIINCLUDEDIR" = x ; then
2313            if test "x$MPIHOME" = x ; then
2314                MPIHOME='/usr'
2315            fi
2316            MPIINCLUDEDIR='$MPIHOME/include'
2317        fi
2318    
2319        if test -r $MPIINCLUDEDIR/mpif.h ; then
2320            for i in $MPI_HEADER_FILES; do
2321                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2322            done
2323    
2324            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2325        else
2326            echo " We cannot create a copy of mpif.h!"
2327    #       exit -1
2328        fi
2329    fi
2330    
2331  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2332  rm -rf .links.tmp  rm -rf .links.tmp
2333  mkdir .links.tmp  mkdir .links.tmp
2334    touch .links.tmp/foo
2335    if test ! -r ".links.tmp/foo" ; then
2336        echo
2337        echo "ERROR : something is wrong with your directory permissions or"
2338        echo "   your user file-creation mask (\"umask\") since creating a"
2339        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2340        echo "   not working.  Please try setting your umask to something"
2341        echo "   sane such as:"
2342        echo
2343        echo "      umask 0002"
2344        echo
2345        echo "   and please verify that you have the proper permissions for"
2346        echo "   creating sub-directories and then reading files created"
2347        echo "   within them."
2348        echo
2349        exit 1
2350    fi
2351    rm -f .links.tmp/foo
2352    
2353    if test "x$OPENAD" != x ; then
2354        OAD_DONT_COMPILE="/dev/null"
2355        OAD_DONT_TRANSFORM="/dev/null"
2356        OAD_KEEP_ORIGINAL="/dev/null"
2357        OAD_CB2M_FILES="/dev/null"
2358        echo "  looking for dontCompile file:  "
2359        for i in "." $MODS ; do
2360            if test -r $i"/dontCompile" ; then
2361                OAD_DONT_COMPILE=$i"/dontCompile"
2362                echo "     found $OAD_DONT_COMPILE"
2363                break
2364            fi
2365        done
2366        echo "  looking for dontTransform file:  "
2367        for i in "." $MODS ; do
2368            if test -r $i"/dontTransform" ; then
2369                OAD_DONT_TRANSFORM=$i"/dontTransform"
2370                echo "     found $OAD_DONT_TRANSFORM"
2371                break
2372            fi
2373        done
2374        echo "  looking for keepOriginal file:  "
2375        for i in "." $MODS ; do
2376            if test -r $i"/keepOriginal" ; then
2377                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2378                echo "     found $OAD_KEEP_ORIGINAL"
2379                break
2380            fi
2381        done
2382        echo "  looking for cb2mFiles:  "
2383        for i in "." $MODS ; do
2384            if test -r $i"/cb2mFiles" ; then
2385                OAD_CB2M_FILES=$i"/cb2mFiles"
2386                echo "     found $OAD_CB2M_FILES"
2387                break
2388            fi
2389        done
2390        echo "   OpenAD exceptions:  "
2391    fi
2392    
2393  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2394  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2395  echo -n 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2396  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2397  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2398  echo -n 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2399  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2400    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2401  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2402  for d in $alldirs ; do  for d in $alldirs ; do
2403      deplist=      deplist=
2404      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2405      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2406        if test "x$OPENAD" != x ; then
2407            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2408        fi
2409      for sf in $sfiles ; do      for sf in $sfiles ; do
2410          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2411              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2412                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  ignore_f=f
2413                  touch .links.tmp/$sf                  case $d/$sf in
2414                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2415                  case $extn in                          ignore_f=t
2416                      F)                          ;;
2417                          echo    " \\"  >> srclist.inc                    ./AD_CONFIG.h)
2418                          echo -n " $sf" >> srclist.inc                          ignore_f=t
2419                            ;;
2420                      ./FC_NAMEMANGLE.h)
2421                            ignore_f=t
2422                            ;;
2423                      ./BUILD_INFO.h)
2424                            ignore_f=t
2425                            ;;
2426                      ./EMBEDDED_FILES.h)
2427                            ignore_f=t
2428                            ;;
2429                      *)
2430                            #  For the local directory *ONLY*,
2431                            #  ignore all soft-links
2432                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2433                                ignore_f=t
2434                            else
2435                                touch .links.tmp/$sf
2436                                deplist="$deplist $sf"
2437                            fi
2438                            ;;
2439                    esac
2440                    if test "x$ignore_f" = xf ; then
2441                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2442                        case $extn in
2443                          F)
2444                            echo    " \\"  >> F77srclist.tmp
2445                            printf " $sf" >> F77srclist.tmp
2446                            if test "x$OPENAD" != x ; then
2447                                basename=${sf%%.F}
2448                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2449                                if test -z "$isAD" ; then
2450                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2451                                    if test -z "$toBeIgnored" ; then
2452                                        echo    " \\"  >> nonADF77srclist.tmp
2453                                        printf " $sf" >> nonADF77srclist.tmp
2454                                    else
2455                                        echo "    not to be compiled   :  $sf"
2456                                    fi
2457                                else # file is initially listed as an AD file we want to exclude it
2458                                     # or we want to retain the untransformed version
2459                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2460                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2461                                    if test -n "$notToBeTransformed"; then
2462                                        echo "    not to be transformed:  $sf"
2463                                    fi
2464                                    if test -n "$untransformedVersionToBeKept" ; then
2465                                        echo "    original to be kept  :  $sf"
2466                                    fi
2467                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2468                                        echo    " \\"  >> nonADF77srclist.tmp
2469                                        printf " $sf" >> nonADF77srclist.tmp
2470                                    fi
2471                                fi
2472                            fi
2473                          ;;                          ;;
2474                      F90)                      F90)
2475                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2476                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2477                          ;;                          ;;
2478                      c)                      c)
2479                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2480                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2481                          ;;                          ;;
2482                      h)                      h)
2483                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2484                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2485                          ;;                          ;;
2486                      flow)                      flow)
2487                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.tmp
2488                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.tmp
2489                          ;;                          ;;
2490                  esac                     esac
2491                    fi
2492              fi              fi
2493          fi          fi
2494      done      done
2495      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2496          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2497            echo "" >> srclinks.tmp
2498          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2499          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2500          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2501    # This may happen when make thinks that a header file has to be "remade"
2502    # because a module it depends on has changed.  In this case we do nothing.
2503            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2504          fi
2505      fi      fi
2506  done  done
2507  rm -rf .links.tmp  rm -rf .links.tmp
2508  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2509  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2510  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2511  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2512  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2513    echo "" >> ad_flow_files.tmp
2514    
2515    CMDLINE=$0
2516    for xx in "$@" ; do nw=`echo $xx | wc -w`
2517        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2518                            else CMDLINE="$CMDLINE '$xx'" ; fi
2519    done
2520    
2521  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2522      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2523  fi  fi
2524  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2525  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 1148  echo "#    $MACHINE" >> $MAKEFILE Line 2527  echo "#    $MACHINE" >> $MAKEFILE
2527  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2528  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2529  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2530  echo "#    $0 $@" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2531  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2532  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2533    
2534    EXE_AD=$EXECUTABLE"_ad"
2535    EXE_FTL=$EXECUTABLE"_ftl"
2536    EXE_SVD=$EXECUTABLE"_svd"
2537    
2538  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2539  #  #
2540    # OPTFILE="$OPTFILE"
2541    #
2542  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2543  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2544  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 1172  cat >>$MAKEFILE <<EOF Line 2558  cat >>$MAKEFILE <<EOF
2558  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2559    
2560  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2561  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2562  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2563  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2564  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
# Line 1181  TOOLSDIR    = ${TOOLSDIR} Line 2567  TOOLSDIR    = ${TOOLSDIR}
2567    
2568  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2569  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
2570    EXE_AD      = ${EXE_AD}
2571    EXE_FTL     = ${EXE_FTL}
2572    EXE_SVD     = ${EXE_SVD}
2573    
2574    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2575    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2576    
2577    # These files are created by Makefile
2578    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2579  EOF  EOF
2580    
2581  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2582        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2583    else
2584        echo "EMBEDDED_FILES = " >>$MAKEFILE
2585    fi
2586    
2587  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2588  # Unix ln (link)  # Unix ln (link)
2589  LN = ${LN}  LN = ${LN}
# Line 1199  KPP = ${KPP} Line 2597  KPP = ${KPP}
2597  FC = ${FC}  FC = ${FC}
2598  # Fortran compiler  # Fortran compiler
2599  F90C = ${F90C}  F90C = ${F90C}
2600    # C compiler
2601    CC = ${CC}
2602  # Link editor  # Link editor
2603  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2604    
2605  # Defines for CPP  # Defines for CPP
2606  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1210  INCLUDES = ${INCLUDES} Line 2610  INCLUDES = ${INCLUDES}
2610  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2611  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2612  # Optim./debug for FC  # Optim./debug for FC
2613  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2614  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2615  # Optim./debug for FC  # Optim./debug for FC
2616  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2617  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2618    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2619  # Flags for CC  # Flags for CC
2620  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2621  # Files that should not be optimized  # Files that should not be optimized
2622  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2623  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2624  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2625  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2626  # Name of the Mekfile  # Name of the Mekfile
2627  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2628    
2629  EOF  EOF
2630    
2631  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2632  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2633  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2634  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2635  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2636  echo               >> $MAKEFILE  cat ad_flow_files.tmp   >> $MAKEFILE
 echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  
 echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  
 echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2637    
2638  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
 rm -f ad_flow_files.inc  
2639    
2640  cat >>$MAKEFILE <<EOF  echo >> $MAKEFILE
2641    
2642  .SUFFIXES:  # add definitions for preprocessed sources
2643  .SUFFIXES: .o .f .p .F .c .F90 .f90  # and note that not all systems allow case sensitive extensions
2644    # hence the $FS and $FS90 here.
2645    # for fixed format f90 files we use ff90 or FF90 resp
2646    # but these are not expected to be the original source files
2647    
2648    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2649    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2650    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2651    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2652    echo >> $MAKEFILE
2653    echo '.SUFFIXES:' >> $MAKEFILE
2654    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2655    
2656    cat >>$MAKEFILE <<EOF
2657    
2658  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2659  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2660            @echo Creating \$@ ...
2661          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2662  depend:  depend:
2663          @make links          @make links
2664          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2665          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2666            -rm -f makedepend.out
2667    
2668  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  lib: libmitgcmuv.a
2669    
2670  small_f: \$(F77FILES) \$(F90FILES)  libmitgcmuv.a: \$(OBJFILES)
2671            ar rcv libmitgcmuv.a \$(OBJFILES)
2672            ar d   libmitgcmuv.a main.o
2673    
2674    links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2675    
2676    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2677    
2678  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2679          @printf 'running ... '          @printf 'running ... '
2680          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2681    
2682    # remove most of the files that "make" generates
2683  clean:  clean:
2684          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2685            -rm -rf *.o
2686            -rm -rf *.$FS *.flowdir
2687            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2688    
2689    # remove most of the files that "make" and "make depend" generate
2690  Clean:  Clean:
2691          @make clean          @make clean
2692          @make cleanlinks          @make cleanlinks
2693          -rm -f Makefile.bak genmake_state genmake_optfile make.log          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2694            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2695            -rm -f genmake_warnings genmake_errors make.log
2696    
2697    # remove also the executable, files that "genmake2" generates (except Makefile)
2698    #         and output from a run (plus log files from testreport)
2699  CLEAN:  CLEAN:
2700          @make Clean          @make Clean
2701            -rm -f \$(EXECUTABLE) \$(EXE_AD) *.bak
2702            -rm -f $LOGFILE genmake_state genmake_*optfile genmake.tr_log make.tr_log
2703          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2704          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2705          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2706          -rm -f \$(EXECUTABLE) output.txt          -rm -f *.txt STD* *diagnostics.log datetime
2707            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2708            -rm -rf mnc_test_*
2709    
 Makefile: makefile  
2710  makefile:  makefile:
2711          ${0} $@          $THIS_SCRIPT $G2ARGS
2712  cleanlinks:  cleanlinks:
2713          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2714    
2715  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are created by make
2716  .F.f:  ${PACKAGES_DOT_H}:
2717            @echo Creating \$@ ...
2718            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2719    AD_CONFIG.h:
2720            @echo Creating \$@ ...
2721            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2722    FC_NAMEMANGLE.h:
2723            @echo Creating \$@ ...
2724            echo "$FC_NAMEMANGLE" > \$@
2725    
2726    BUILD_INFO.h:
2727            @echo Creating \$@ ...
2728    EOF
2729    
2730    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2731    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2732    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2733    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2734    
2735    if test "x$EMBED_SRC" = xt ; then
2736        cat >>$MAKEFILE <<EOF
2737    
2738    decode_files.o : EMBEDDED_FILES.h
2739    
2740    ##  \$(F77_PP_SRC_FILES)
2741    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2742            @echo Creating \$@ ...
2743            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2744            -rm -f all_fF.tar.gz
2745            -gzip all_fF.tar
2746    
2747    EMBEDDED_FILES.h : all_fF.tar.gz
2748            @echo Creating \$@ ...
2749            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2750    
2751    EOF
2752    fi
2753    
2754    cat >>$MAKEFILE <<EOF
2755    
2756    # The normal chain of rules is (  .F - .$FS - .o  )
2757    
2758    ## This nullifies any default implicit rules concerning these two file types:
2759    ## %.o : %.F
2760    
2761    .F.$FS:
2762          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2763  .f.o:  .$FS.o:
2764            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2765    .F.o:
2766          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2767  .F90.f90:  .F90.$FS90:
2768          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2769  .f90.o:  .FF90.f$FS90:
2770            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2771    .$FS90.o:
2772          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2773    .f$FS90.o:
2774            cp \$< \$(basename  \$<).f90
2775            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2776  .c.o:  .c.o:
2777          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2778    .flow.flowdir:
2779            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2780    
2781  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2782  .F.p:  .F.p:
2783          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2784  .p.f:  .p.$FS:
2785          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2786    
2787    EOF
2788    
2789  #=========================================  #=========================================
2790  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2791    #===  for TAMC/TAF  ======================
2792    
2793    if test "x$OPENAD" = x ; then
2794    
2795    cat >>$MAKEFILE <<EOF
2796    
2797  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2798  TAF            = ${TAF}  TAF            = ${TAF}
2799    
2800    TAF_EXTRA      = ${TAF_EXTRA}
2801    TAMC_EXTRA     = ${TAMC_EXTRA}
2802    
2803  EOF  EOF
2804    
2805  ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"  ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 1311  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2807  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2807  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2808  for i in $ad_vars ; do  for i in $ad_vars ; do
2809      name=$i      name=$i
2810      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2811      eval $t1      eval $t1
2812      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2813      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2814  done  done
2815    
2816  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2817  echo >> $MAKEFILE  echo >> $MAKEFILE
2818  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2819  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2820  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2821      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2822      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2823  done  done
2824  echo >> $MAKEFILE  echo >> $MAKEFILE
2825    rm -f adSrcFiles.tmp
2826    
2827  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2828    
2829    # ... AD ...
2830    adall: \$(EXE_AD)
2831    adtaf: ad_taf_output.$FS
2832    adtamc: ad_tamc_output.$FS
2833    
2834    ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
2835            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2836            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2837            -rm -f ad_config.template
2838            @make \$(F77_PP_SRC_FILES)
2839            @make \$(FLOFILES)
2840            cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
2841    
2842    ad_taf_output.$FS: ad_input_code.$FS
2843            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2844            ls -l ad_input_code_ad.$FS
2845            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2846    
2847    adtafonly:
2848            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2849            ls -l ad_input_code_ad.$FS
2850            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2851    
2852    \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2853            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2854    
2855    ad_tamc_output.$FS: ad_input_code.$FS
2856            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2857            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2858    
2859    ad_tamc: ad_tamc_output.o \$(OBJFILES)
2860            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2861    
2862    adonlyfwd:
2863            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2864    
2865  ad_input_code.f: \$(F77FILES)  adtrick:
2866            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2867    
2868    # ... FTL ...
2869    ftlall: ftl_taf
2870    ftltaf: ftl_taf_output.$FS
2871    ftltamc: ftl_tamc_output.$FS
2872    
2873    ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2874            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2875            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2876            -rm -f ftl_config.template
2877            @make \$(F77_PP_SRC_FILES)
2878          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2879          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2880    
2881  # ... AD ...  ftl_taf_output.$FS: ftl_input_code.$FS
2882  ad_taf_output.f: ad_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2883          \$(TAF) \$(AD_TAF_FLAGS) ad_input_code.f          ls -l ftl_input_code_ftl.$FS
2884          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2885    
2886  ad_taf: ad_taf_output.o \$(OBJFILES)  ftltafonly:
2887          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2888            ls -l ftl_input_code_ftl.$FS
2889  ad_tamc_output.f: ad_input_code.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2890          \$(TAMC) \$(AD_TAMC_FLAGS) ad_input_code.f  
2891          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2892            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2893    
2894    ftl_tamc_output.$FS: ftl_input_code.$FS
2895            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2896            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2897    
2898  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2899          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2900    
2901    # ... SVD ...
2902    svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2903            @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2904            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2905    svdall: svd_touch svd_taf
2906    
2907    svd_taf: \$(OBJFILES)
2908            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2909    
2910            @echo "--->>> Only COMPILE svd code! <<<---"
2911            @echo "--->>> Assumes you previously <<<---"
2912            @echo "--->>> did make svdtaf        <<<---"
2913    
2914    svd_touch:
2915            @echo "--->>> Only COMPILE svd code! <<<---"
2916            @echo "--->>> Assumes you previously <<<---"
2917            @echo "--->>> did make svdtaf        <<<---"
2918            touch ad_taf_output.$FS ftl_taf_output.$FS
2919            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2920            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2921            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2922            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2923            -rm -f ftl_config.template
2924    
2925    EOF
2926    
2927  # ... FLT ...  fi
 flt_taf_output.f: ad_input_code.f  
         \$(TAF) \$(FTL_TAF_FLAGS) ad_input_code.f  
         cat ad_input_code_ad.f | sed -f adjoint_sed > flt_taf_output.f  
2928    
2929  flt_taf: flt_taf_output.o \$(OBJFILES)  #===  for OpenAD  ========================
         \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) flt_taf_output.o \$(LIBS)  
2930    
2931  flt_tamc_output.f: ad_input_code.f  if test "x$OPENAD" != x ; then
         \$(TAMC) \$(FTL_TAF_FLAGS) ad_input_code.f  
         cat ad_input_code_ad.f | sed -f adjoint_sed > flt_tamc_output.f  
2932    
2933  flt_tamc: flt_tamc_output.o \$(OBJFILES)  # ============ begin OpenAD specific section ==============
         \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) flt_tamc_output.o \$(LIBS)  
2934    
2935    cat >>$MAKEFILE <<EOF
2936    
2937  # ... SVD ...  # all the source files linked from the various locations:
2938  svd_taf_output.f: ad_input_code.f  ALL_LINKED_FILES= \
2939          \$(TAF) \$(SVD_TAF_FLAGS) ad_input_code.f  \$(F77_SRC_FILES) \
2940          cat ad_input_code_ad.f | sed -f adjoint_sed > svd_taf_output.f  \$(C_SRC_FILES) \
2941    \$(H_SRC_FILES) \
2942    \$(F90_SRC_FILES) \
2943    \$(SPECIAL_FILES)
2944    
2945    ifndef OPENADROOT
2946      \$(error "Error:  environment variable OPENADROOT not defined!")
2947    endif
2948    
2949    ifndef XAIFSCHEMAROOT
2950      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2951    endif
2952    
2953    ifndef XAIFBOOSTERROOT
2954      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2955    endif
2956    
2957  svd_taf: svd_taf_output.o \$(OBJFILES)  EOF
         \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) svd_taf_output.o \$(LIBS)  
2958    
2959    echo "  Add the source list for common block to module conversion "
2960    echo >> $MAKEFILE
2961    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2962    for i in `cat ${OAD_CB2M_FILES}` ; do
2963      echo    " \\" >> $MAKEFILE
2964      printf " $i" >> $MAKEFILE
2965    done
2966    echo >> $MAKEFILE
2967    
2968  #=========================================  echo "  Add the source list for AD code generation"
2969    echo >> $MAKEFILE
2970    printf "AD_FILES = " >> $MAKEFILE
2971    for i in `cat ${OAD_CB2M_FILES}` ; do
2972      echo    " \\" >> $MAKEFILE
2973      printf " ${i}_mod.f$FS90" >> $MAKEFILE
2974    done
2975    AD_FILES=`cat adSrcFiles.tmp`
2976    for i in $AD_FILES ; do
2977      basename=${i%%.f}
2978      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
2979      if test -z "$toBeIgnored" ; then
2980        echo    " \\" >> $MAKEFILE
2981        printf " $i" >> $MAKEFILE
2982      fi
2983    done
2984    echo >> $MAKEFILE
2985    rm -f adSrcFiles.tmp
2986    
2987    cat >>$MAKEFILE <<EOF
2988    
2989    adAll: \$(EXE_AD)
2990    .PHONY: adAll
2991    
2992    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
2993    
2994    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
2995    
2996    .PHONY: adDepend
2997    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
2998            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2999            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3000            -rm -f makedepend.out
3001    
3002    OPENAD_SUPPORT_F90_SRC_FILES = \
3003    w2f__types.F90 \
3004    OAD_active.F90 \
3005    OAD_cp.F90 \
3006    OAD_rev.F90 \
3007    OAD_tape.F90
3008    
3009    OPENAD_SUPPORT_C_SRC_FILES = \
3010    iaddr.c \
3011    timeRatio.c
3012    
3013    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3014            cat \$^ > \$@
3015    
3016    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3017            cat \$^ > \$@
3018    
3019    f95_test.out: f95_test_mods.f90 f95_test.f90
3020            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3021            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3022    
3023    # the file included below is created by the
3024    # postProcessor and its inclusion sets the
3025    # variable POSTPROCESSEDFILES
3026    # used below. Because the file is made during
3027    # make it won't be read until the second (recursive)
3028    # invocation in the rule below
3029    -include postProcess.make
3030    
3031    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)
3032    
3033    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3034    
3035    postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)
3036    ifeq (\$(MAKELEVEL),0)
3037            \$(MAKE) adAll
3038    else
3039            touch \$@
3040    endif
3041    
3042    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)
3043    ifeq (\$(MAKELEVEL),1)
3044            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3045    else
3046            touch \$@
3047    endif
3048    
3049    # makefile debug rule
3050    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3051    .PHONY: openad
3052    
3053    # create the module files
3054    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3055            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3056    
3057    # create the header files
3058    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3059            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3060    
3061    # change everybody else to use the new module files:
3062    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3063            ../OAD_support/cb2mUseModules.bash $< ${MPI}
3064    
3065    # makefile debug rule
3066    small_f: \$(CB2M_F90_PP_SRC_FILES)
3067    .PHONY: small_f
3068    
3069    ad_output.txt: \$(EXE_AD)
3070            @printf 'linking data files ... '
3071            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3072            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3073            @printf 'running ... '
3074            @./\$(EXE_AD) > \$@
3075    
3076    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3077    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3078            cat \$^ > \$@
3079    
3080    # strip all comments and blanks to reduce
3081    # the file size in order to reduce perl's memory requirements
3082    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3083            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3084    
3085    # mfef90 preprocessing
3086    # expand statement functions
3087    # expose mfef90 specific substring handling
3088    # add the w2f__types module
3089    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3090            ./mfef90 -r8 -z -F -N132 \$<
3091            mv \$<.B \$(basename \$<).B
3092            ./whirl2f -openad \$(basename \$<).B
3093            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3094    
3095    # canonicalizer
3096    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3097            ./preProcess.py --timing --r8 -H -S \$< -o \$@
3098    
3099    # F -> WHIRL
3100    # note that the canonicalized version cuts off at col 72
3101    # doing this also for string constants which is ok as long
3102    # as we are in fixed mode and cut of exactly there.
3103    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3104    # characters respectively.
3105    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3106            ./mfef90 -r8 -z -F \$<
3107            mv \$<.B \$@
3108    
3109    # WHIRL -> XAIF
3110    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3111            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3112    
3113    # XAIF -> XAIF'
3114    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3115            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3116    
3117    # XAIF' -> WHIRL'
3118    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3119            ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<
3120    
3121    # WHIRL' -> F'
3122    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3123            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3124    
3125    # insert template directives
3126    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3127            ../OAD_support/insertTemplateDir.bash \$< \$@
3128    
3129    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3130    # postprocess F'
3131    postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3132            # the target is a placeholder to signal execution of the rule
3133            touch \$@
3134            # this step also creates the file postProcess.make but we cannot
3135            # name it as the target or else make will try to remake it for
3136            # the include directive above for any rule, e.g. make clean
3137            ./postProcess.py --progress --timing --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<
3138    
3139    # setup some links
3140    %.xsd:
3141            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3142    
3143    mfef90:
3144            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3145    
3146    # link the support files:
3147    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3148            \$(LN) ../OAD_support/\$@ .
3149    
3150    whirl2xaif xaif2whirl:
3151            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3152    
3153    preProcess.py postProcess.py:
3154            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3155    
3156    whirl2f whirl2f_be:
3157            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3158    
3159    oadDriver:
3160            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3161    
3162    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)
3163    
3164    # ============ end OpenAD specific section ==============
3165    
3166  EOF  EOF
3167    
3168    fi
3169    
3170    #=========================================
3171    
3172  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3173      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3174  fi  fi
# Line 1390  for i in $KPPFILES ; do Line 3180  for i in $KPPFILES ; do
3180      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3181          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3182      fi      fi
3183      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3184  done  done
3185    
3186  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1400  for i in $NOOPTFILES ; do Line 3190  for i in $NOOPTFILES ; do
3190      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3191          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3192      fi      fi
3193      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3194      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3195  done  done
3196    
# Line 1413  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3203  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3203    
3204  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3205    
3206    # Create special header files
3207    $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3208    if test ! -f $PACKAGES_DOT_H ; then
3209        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3210    else
3211        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
3212        RETVAL=$?
3213        if test "x$RETVAL" = x0 ; then
3214            rm -f $PACKAGES_DOT_H".tmp"
3215        else
3216            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
3217            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3218        fi
3219    fi
3220    if test ! -f AD_CONFIG.h ; then
3221        $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
3222    fi
3223    
3224  #  Write the "state" for future records  #  Write the "state" for future records
3225  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3226      echo -n "" > genmake_state      printf "" > genmake_state
3227      for i in $gm_state ; do      for i in $gm_state ; do
3228          t1="t2=\$$i"          t1="t2=\$$i"
3229          eval $t1          eval $t1

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