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revision 1.91 by edhill, Fri Jul 30 14:31:40 2004 UTC revision 1.209 by jmc, Mon Nov 1 00:20:28 2010 UTC
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24  }  }
25    
26  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
27  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
29      cpp_options=$1      cpp_options=$1
30      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38  }  }
39    
40  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 39  test_for_string_in_file() { Line 47  test_for_string_in_file() {
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
49          grep -i "$strng" $file          grep -i "$strng" $file
50          return 1          exit 99
51      fi      fi
52      return 0      return 0
53  }  }
# Line 48  test_for_string_in_file() { Line 56  test_for_string_in_file() {
56  # the package list.  # the package list.
57  expand_pkg_groups() {  expand_pkg_groups() {
58      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
59      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
60          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
61          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
# Line 59  expand_pkg_groups() { Line 66  expand_pkg_groups() {
66              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
67                  matched=1                  matched=1
68                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
69                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
70                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
71              else              else
72                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
# Line 102  EOF Line 109  EOF
109              check_for_broken_Ff              check_for_broken_Ff
110          else          else
111              cat <<EOF 2>&1              cat <<EOF 2>&1
112  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
113    (fails the "cp" test) and this program cannot find a suitable    (fails the "cp" test) and this program cannot find a suitable
114    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
115    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
116    
117  EOF  EOF
# Line 122  EOF Line 129  EOF
129        stop        stop
130        end        end
131  EOF  EOF
132      test -f Makefile  &&  mv -f Makefile Makefile.bak      test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
133      cat <<EOF >> Makefile      cat <<EOF >> $MAKEFILE
 %.$tfs : %.F  
134  .SUFFIXES:  .SUFFIXES:
135  genmake_hello.$tfs: genmake_hello.F  .SUFFIXES: .$tfs .F
136          $LN genmake_hello.F genmake_hello.$tfs  .F.$tfs:
137            $LN \$< \$@
138  EOF  EOF
139      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE "genmake_hello."$tfs > /dev/null 2>&1
140      RETVAL=$?      RETVAL=$?
# Line 138  EOF Line 145  EOF
145              check_for_broken_Ff              check_for_broken_Ff
146          else          else
147              cat <<EOF 2>&1              cat <<EOF 2>&1
148  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
149    (fails the "make/ln" test) and this program cannot find a suitable    (fails the "make/ln" test) and this program cannot find a suitable
150    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
151    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
152    
153  EOF  EOF
# Line 148  EOF Line 155  EOF
155              return              return
156          fi          fi
157      fi      fi
158      rm -f genmake_hello.* Makefile      rm -f genmake_hello.* $MAKEFILE
159      test -f Makefile  &&  mv -f Makefile.bak Makefile      test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
160    
161      #  If we make it here, use the extensions      #  If we make it here, use the extensions
162      FS=$tfs      FS=$tfs
# Line 181  look_for_makedepend()  { Line 188  look_for_makedepend()  {
188      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
189          which makedepend > /dev/null 2>&1          which makedepend > /dev/null 2>&1
190          RV0=$?          RV0=$?
191            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
192            #  echo 'MAKEFILE="'$MAKEFILE'"'
193            cat <<EOF >> $MAKEFILE
194    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
195    #
196    #   Some "makedepend" implementations will die if they cannot
197    #   find a Makefile -- so this file is here to gives them an
198    #   empty one to find and parse.
199    EOF
200          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
201        program test        program test
202        write(*,*) 'test'        write(*,*) 'test'
# Line 189  look_for_makedepend()  { Line 205  look_for_makedepend()  {
205  EOF  EOF
206          makedepend genmake_tc.f > /dev/null 2>&1          makedepend genmake_tc.f > /dev/null 2>&1
207          RV1=$?          RV1=$?
208            test -f $MAKEFILE  &&  rm -f $MAKEFILE
209            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
210          if test "x${RV0}${RV1}" = x00 ; then          if test "x${RV0}${RV1}" = x00 ; then
211              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
212          else          else
213              echo "    a system-default makedepend was not found."              echo "    a system-default makedepend was not found."
214                
215              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
216              build_cyrus_makedepend              build_cyrus_makedepend
217              RETVAL=$?              RETVAL=$?
# Line 237  build_cyrus_makedepend()  { Line 255  build_cyrus_makedepend()  {
255      fi      fi
256  }  }
257    
258    
259    build_embed_encode()
260    {
261        printf "  building the embed-encode utility...  "
262        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
263            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
264                echo
265                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
266                echo
267                EMBED_SRC=f
268                return 1
269            fi
270            clist="cc gcc c89 $CC"
271            for ic in $clist ; do
272                comm="$ic -o encode_files encode_files.c"
273                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
274                RETVAL=$?
275                if test "x$RETVAL" = x0 ; then
276                    echo "OK"
277                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
278                    return 0
279                fi
280            done
281            echo
282            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
283            echo "      so it has been disabled"
284            echo
285            EMBED_SRC=f
286            return 1
287        fi
288        echo "OK"
289        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
290    }
291    
292    
293  # Guess possible config options for this host  # Guess possible config options for this host
294  find_possible_configs()  {  find_possible_configs()  {
295    
# Line 250  find_possible_configs()  { Line 303  find_possible_configs()  {
303      echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32      echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
304      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
305      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
306        
307      echo "test" > test      echo "test" > test
308      ln -s ./test link      ln -s ./test link
309      RETVAL=$?      RETVAL=$?
# Line 271  find_possible_configs()  { Line 324  find_possible_configs()  {
324    
325      #================================================================      #================================================================
326      #  look for possible C compilers      #  look for possible C compilers
327      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
328      p_CC=      p_CC=
329      for c in $tmp ; do      for c in $tmp ; do
330          rm -f ./genmake_hello.c  ./genmake_hello          rm -f ./genmake_hello.c  ./genmake_hello
# Line 310  EOF Line 363  EOF
363    
364      #================================================================      #================================================================
365      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
366      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
367      p_FC=      p_FC=
368      for c in $tmp ; do      for c in $tmp ; do
369          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 342  EOF Line 395  EOF
395      else      else
396          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
397          echo "   "$p_FC          echo "   "$p_FC
398          if test "x$FC" = x ; then      fi
399              FC=`echo $p_FC | $AWK '{print $1}'`  
400              echo "  Setting FORTRAN compiler to: "$FC      #  Use the first of the compilers found in the current PATH
401          fi      #  that has a correctly-named optfile
402        if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
403            for i in $p_FC ; do
404                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
405                if test -r $OPTFILE ; then
406                    echo "  Setting OPTFILE to: "$OPTFILE
407                    break
408                fi
409            done
410      fi      fi
411    
412      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
# Line 380  Error: No options file was found in:  $R Line 441  Error: No options file was found in:  $R
441  EOF  EOF
442          exit 1          exit 1
443      fi      fi
444        
445  #     # look for possible MPI libraries  #     # look for possible MPI libraries
446  #     mpi_libs=  #     mpi_libs=
447  #     mpi_fort=`which mpif77 2>/dev/null`  #     mpi_fort=`which mpif77 2>/dev/null`
# Line 399  EOF Line 460  EOF
460  #       if test "x${RETVAL}" = x0 ; then  #       if test "x${RETVAL}" = x0 ; then
461  #           a=`cat out`  #           a=`cat out`
462  #           for i in $a ; do  #           for i in $a ; do
463  #               case $i in  #               case $i in
464  #                   -*)  #                   -*)
465  #                       mpi_libs="$mpi_libs $i" ;;  #                       mpi_libs="$mpi_libs $i" ;;
466  #               esac  #               esac
# Line 418  get_pdepend_list()  { Line 479  get_pdepend_list()  {
479      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
480      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
481      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
482          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
483          > ./.pd_tmp          > ./.pd_tmp
484        RETVAL=$?
485        if test ! "x${RETVAL}" = x0 ; then
486          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
487          exit 1
488        fi
489      . ./.pd_tmp      . ./.pd_tmp
490      rm -f ./.pd_tmp      rm -f ./.pd_tmp
491    
     printf "PNAME = "${}  
492  }  }
493    
494    
# Line 446  Usage: "$0" [OPTIONS] Line 511  Usage: "$0" [OPTIONS]
511        -optfile NAME | --optfile NAME | -of NAME | --of NAME        -optfile NAME | --optfile NAME | -of NAME | --of NAME
512        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
513            Use "NAME" as the optfile.  By default, an attempt will be            Use "NAME" as the optfile.  By default, an attempt will be
514            made to find an appropriate "standard" optfile in the            made to find an appropriate "standard" optfile in the
515            tools/build_options/ directory.            tools/build_options/ directory.
516    
517      -pdepend NAME | --pdepend NAME      -pdepend NAME | --pdepend NAME
518        -pdepend=NAME | --pdepend=NAME        -pdepend=NAME | --pdepend=NAME
519            Get package dependency information from "NAME".            Get package dependency information from "NAME".
520    
521      -pdefault NAME | --pdefault NAME      -pgroups NAME | --pgroups NAME
522        -pdefault=NAME | --pdefault=NAME        -pgroups=NAME | --pgroups=NAME
523            Get the default package list from "NAME".            Get the package groups information from "NAME".
524    
525        -bash NAME
526              Explicitly specify the Bourne or BASH shell to use
527    
528      -make NAME | -m NAME      -make NAME | -m NAME
529        --make=NAME | -m=NAME        --make=NAME | -m=NAME
530            Use "NAME" for the MAKE program. The default is "make" but            Use "NAME" for the MAKE program. The default is "make" but
531            many platforms, "gmake" is the preferred choice.            many platforms, "gmake" is the preferred choice.
532    
533      -makefile NAME | -mf NAME      -makefile NAME | -mf NAME
# Line 473  Usage: "$0" [OPTIONS] Line 541  Usage: "$0" [OPTIONS]
541      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
542        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
543            Specify the location of the MITgcm ROOTDIR as "NAME".            Specify the location of the MITgcm ROOTDIR as "NAME".
544            By default, genamke will try to find the location by            By default, genamke will try to find the location by
545            looking in parent directories (up to the 5th parent).            looking in parent directories (up to the 5th parent).
546    
547      -mods NAME | --mods NAME | -mo NAME | --mo NAME      -mods NAME | --mods NAME | -mo NAME | --mo NAME
548        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
549            Here, "NAME" specifies a list of directories that are            Here, "NAME" specifies a list of directories that are
550            used for additional source code.  Files found in the            used for additional source code.  Files found in the
551            "mods list" are given preference over files of the same            "mods list" are given preference over files of the same
552            name found elsewhere.            name found elsewhere.
553    
554      -disable NAME | --disable NAME      -disable NAME | --disable NAME
555        -disable=NAME | --disable=NAME        -disable=NAME | --disable=NAME
556            Here "NAME" specifies a list of packages that we don't            Here "NAME" specifies a list of packages that we don't
557            want to use.  If this violates package dependencies,            want to use.  If this violates package dependencies,
558            genamke will exit with an error message.            genamke will exit with an error message.
559    
560      -enable NAME | --enable NAME      -enable NAME | --enable NAME
561        -enable=NAME | --enable=NAME        -enable=NAME | --enable=NAME
562            Here "NAME" specifies a list of packages that we wish            Here "NAME" specifies a list of packages that we wish
563            to specifically enable.  If this violates package            to specifically enable.  If this violates package
564            dependencies, genamke will exit with an error message.            dependencies, genamke will exit with an error message.
565    
566      -standarddirs NAME | --standarddirs NAME      -standarddirs NAME | --standarddirs NAME
567        -standarddirs=NAME | --standarddirs=NAME        -standarddirs=NAME | --standarddirs=NAME
568            Here, "NAME" specifies a list of directories to be            Here, "NAME" specifies a list of directories to be
569            used as the "standard" code.            used as the "standard" code.
570    
571      -fortran NAME | --fortran NAME | -fc NAME | --fc NAME      -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
572        -fc=NAME | --fc=NAME        -fc=NAME | --fc=NAME
573            Use "NAME" as the fortran compiler.  By default, genmake            Use "NAME" as the fortran compiler.  By default, genmake
574            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
575            "usual suspects" such as g77, f77, etc.            "usual suspects" such as g77, f77, etc.
576    
577      -cc NAME | --cc NAME | -cc=NAME | --cc=NAME      -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
578            Use "NAME" as the C compiler.  By default, genmake            Use "NAME" as the C compiler.  By default, genmake
579            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
580            "usual suspects" such as gcc, c89, cc, etc.            "usual suspects" such as gcc, c89, cc, etc.
581    
582      -[no]ieee | --[no]ieee      -[no]ieee | --[no]ieee
583            Do or don't use IEEE numerics.  Note that this option            Do or don't use IEEE numerics.  Note that this option
584            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
585            is being used.            is being used.
586    
587        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
588              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
589              *only* works if CPP_EEOPTIONS.h allows this.
590    
591        -ignoretime | -ignore_time | --ignoretime | --ignore_time
592              Ignore all the "wall clock" routines entirely.  This will
593              not in any way hurt the model results -- it simply means
594              that the code that checks how long the model spends in
595              various routines will give junk values.
596    
597        -ts | --ts
598              Produce timing information per timestep
599        -papis | --papis
600              Produce summary MFlop/s (and IPC) with PAPI per timestep
601        -pcls | --pcls
602              Produce summary MFlop/s etc. with PCL per timestep
603        -foolad | --foolad
604              Fool the AD code generator
605        -papi | --papi
606              Performance analysis with PAPI
607        -pcl | --pcl
608              Performance analysis with PCL
609        -hpmt | --hpmt
610              Performance analysis with the HPM Toolkit
611    
612        -gsl | --gsl
613              Use GSL to control floating point rounding and precision
614        -devel | --devel
615              Add additional warning and debugging flags for development
616    
617      -mpi | --mpi      -mpi | --mpi
618            Include MPI header files and link to MPI libraries            Include MPI header files and link to MPI libraries
619      -mpi=PATH | --mpi=PATH      -mpi=PATH | --mpi=PATH
620            Include MPI header files and link to MPI libraries using MPI_ROOT            Include MPI header files and link to MPI libraries using MPI_ROOT
621            set to PATH. i.e. Include files from $PATH/include, link to libraries            set to PATH. i.e. Include files from \$PATH/include, link to libraries
622            from $PATH/lib and use binaries from $PATH/bin.            from \$PATH/lib and use binaries from \$PATH/bin.
623    
624      -bash NAME      -omp | --omp
625            Explicitly specify the Bourne or BASH shell to use            Activate OpenMP code + use Compiler option OMPFLAG
626        -omp=OMPFLAG | --omp=OMPFLAG
627              Activate OpenMP code + use Compiler option OMPFLAG
628    
629        -es | --es | -embed-source | --embed-source
630              Embed a tarball containing the full source code
631              (including the Makefile, etc.) used to build the
632              executable [off by default]
633    
634    While it is most often a single word, the "NAME" variables specified    While it is most often a single word, the "NAME" variables specified
635    above can in many cases be a space-delimited string such as:    above can in many cases be a space-delimited string such as:
636    
637      --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'      --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
# Line 537  Usage: "$0" [OPTIONS] Line 642  Usage: "$0" [OPTIONS]
642    
643    For more detailed genmake documentation, please see:    For more detailed genmake documentation, please see:
644    
645      http://mitgcm.org/devel_HOWTO/      http://mitgcm.org/public/devel_HOWTO/
646    
647  EOF  EOF
648    
# Line 553  get_fortran_c_namemangling()  { Line 658  get_fortran_c_namemangling()  {
658      fi      fi
659    
660      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
661        
662      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
663  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
664  EOF  EOF
# Line 581  WARNING: Please contact <MITgcm-support@ Line 686  WARNING: Please contact <MITgcm-support@
686  EOF  EOF
687          return 1          return 1
688      fi      fi
689      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
690        subroutine tcall( string )        subroutine tcall( string )
691        character*(*) string        character*(*) string
692        call tsub( string )        call tsub( string )
693        end        end
694  EOF  EOF
695      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
696      RETVAL=$?      RETVAL=$?
697      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
698          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 653  void FC_NAMEMANGLE(cloc) ( double *curti Line 758  void FC_NAMEMANGLE(cloc) ( double *curti
758   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
759  }  }
760  EOF  EOF
761      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
762        echo $COMM >> genmake_warnings
763        $COMM >> genmake_warnings 2>&1
764      RET_C=$?      RET_C=$?
765      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
766        program hello        program hello
767        Real*8 wtime        REAL*8 wtime
768        external cloc        external cloc
769        call cloc(wtime)        call cloc(wtime)
770        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
771        end program hello        end
772  EOF  EOF
773      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
774        echo $COMM >> genmake_warnings
775        $COMM >> genmake_warnings 2>&1
776      RET_F=$?      RET_F=$?
777      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
778      RETVAL=$?      RETVAL=$?
779      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
780          HAVE_CLOC=t          HAVE_CLOC=t
# Line 675  EOF Line 784  EOF
784  }  }
785    
786    
787    check_HAVE_SIGREG()  {
788        if test ! "x$HAVE_SIGREG" = x ; then
789            return
790        fi
791        get_fortran_c_namemangling
792        cat <<EOF > genmake_tc_1.c
793    $FC_NAMEMANGLE
794    #include <stdlib.h>
795    #include <stdio.h>
796    #include <signal.h>
797    #include <errno.h>
798    #include <ucontext.h>
799    
800    int * ip;
801    
802    static void killhandler(
803        unsigned int sn, siginfo_t  si, struct ucontext *sc )
804    {
805        *ip = *ip + 1;
806        return;
807    }
808    
809    void FC_NAMEMANGLE(sigreg) (int * aip)
810    {
811        struct sigaction s;
812        ip = aip;
813        s.sa_flags = SA_SIGINFO;
814        s.sa_sigaction = (void *)killhandler;
815        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
816            printf("Sigaction returned error = %d\n", errno);
817            exit(0);
818        }
819        return;
820    }
821    EOF
822        COMM="$CC $CFLAGS -c genmake_tc_1.c"
823        echo $COMM >> genmake_warnings
824        $COMM >> genmake_warnings 2>&1
825        RET_C=$?
826        cat <<EOF > genmake_tc_2.$FS
827          program hello
828          integer anint
829          common /iv/ anint
830          external sigreg
831          call sigreg(anint)
832          end
833    EOF
834        echo >> genmake_warnings
835        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
836        cat genmake_tc_2.$FS >> genmake_warnings
837        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
838        echo $COMM >> genmake_warnings
839        $COMM >> genmake_warnings 2>&1
840        RETVAL=$?
841        if test "x$RETVAL" = x0 ; then
842            HAVE_SIGREG=t
843            DEFINES="$DEFINES -DHAVE_SIGREG"
844        fi
845        rm -f genmake_tc*
846    }
847    
848    
849    check_HAVE_SETRLSTK()  {
850        if test "x$HAVE_SETRLSTK" = xt ; then
851            DEFINES="$DEFINES -DHAVE_SETRLSTK"
852            return
853        fi  
854        if test ! "x$HAVE_SETRLSTK" = x ; then
855            return
856        fi
857        get_fortran_c_namemangling
858        cat <<EOF > genmake_tc_1.c
859    $FC_NAMEMANGLE
860    #include <sys/time.h>
861    #include <sys/resource.h>
862    #include <unistd.h>
863    void FC_NAMEMANGLE(setrlstk) ()
864    {
865        struct rlimit rls;
866        rls.rlim_cur = RLIM_INFINITY;
867        rls.rlim_max = RLIM_INFINITY;
868        setrlimit(RLIMIT_STACK, &rls);
869        return;
870    }
871    EOF
872        COMM="$CC $CFLAGS -c genmake_tc_1.c"
873        echo $COMM >> genmake_warnings
874        $COMM >> genmake_warnings 2>&1
875        RET_C=$?
876        cat <<EOF > genmake_tc_2.$FS
877          program hello
878          external setrlstk
879          call setrlstk()
880          end
881    EOF
882        echo >> genmake_warnings
883        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
884        cat genmake_tc_2.$FS >> genmake_warnings
885        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
886        echo $COMM >> genmake_warnings
887        $COMM >> genmake_warnings 2>&1
888        RETVAL=$?
889        if test "x$RETVAL" = x0 ; then
890            HAVE_SETRLSTK=t
891            DEFINES="$DEFINES -DHAVE_SETRLSTK"
892        fi
893        rm -f genmake_tc*
894    }
895    
896    
897    check_HAVE_STAT()  {
898        get_fortran_c_namemangling
899        cat <<EOF > genmake_tc_1.c
900    $FC_NAMEMANGLE
901    #include <stdio.h>
902    #include <stdlib.h>
903    #include <unistd.h>
904    #include <sys/stat.h>
905    #include <sys/types.h>
906    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
907    {
908        char name[512];
909        struct stat astat;
910    
911        name[0] = 'a'; name[1] = '\0';
912        if (! stat(name, &astat))
913            *nbyte = (int)(astat.st_size);
914        else
915            *nbyte = -1;
916    }
917    EOF
918        COMM="$CC $CFLAGS -c genmake_tc_1.c"
919        echo $COMM >> genmake_warnings
920        $COMM >> genmake_tc.log 2>&1
921        RET_C=$?
922        cat <<EOF > genmake_tc_2.$FS
923          program hello
924          integer nbyte
925          call tfsize(nbyte)
926          print *," HELLO WORLD", nbyte
927          end
928    EOF
929        echo >> genmake_warnings
930        echo "running: check_HAVE_STAT()" >> genmake_warnings
931        cat genmake_tc_2.$FS >> genmake_warnings
932        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
933        echo $COMM >> genmake_warnings
934        $COMM >> genmake_tc.log 2>&1
935        RETVAL=$?
936        if test "x$RETVAL" = x0 ; then
937            HAVE_STAT=t
938            DEFINES="$DEFINES -DHAVE_STAT"
939        fi
940        rm -f genmake_tc*
941    }
942    
943    
944  check_netcdf_libs()  {  check_netcdf_libs()  {
945      echo "" > genmake_tnc.log      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
946      cat <<EOF > genmake_tnc.for          return
947        fi
948        echo >> genmake_warnings
949        echo "running: check_netcdf_libs()" >> genmake_warnings
950        cat <<EOF > genmake_tnc.F
951        program fgennc        program fgennc
952  #include "netcdf.inc"  #include "netcdf.inc"
953    EOF
954        if test ! "x$MPI" = x ; then
955            echo '#include "mpif.h"' >> genmake_tnc.F
956        fi
957        cat <<EOF >> genmake_tnc.F
958        integer iret, ncid, xid        integer iret, ncid, xid
959        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
960        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
# Line 689  check_netcdf_libs()  { Line 964  check_netcdf_libs()  {
964        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
965        end        end
966  EOF  EOF
967      #echo "$CPP $DEFINES $INCLUDES"      echo "===  genmake_tnc.F  ===" > genmake_tnc.log
968      $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \      cat genmake_tnc.F >> genmake_tnc.log
969          &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
970        RET_CPP=f
971        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
972        echo "$COMM" >> genmake_tnc.log
973        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
974        if test "x$RET_CPP" = xf ; then
975            echo "  WARNING: CPP failed to pre-process the netcdf test." \
976                >> genmake_tnc.log
977            echo "    Please check that \$INCLUDES is properly set." \
978                >> genmake_tnc.log
979        fi
980        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
981        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
982        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
983            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
984      RET_COMPILE=$?      RET_COMPILE=$?
985      test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1      cat genmake_tnc.log >> genmake_warnings
986      RETVAL=$?  
987      if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then      #EH3  Remove test program execution for machines that either disallow
988        #EH3  execution or cannot support it (eg. cross-compilers)
989        #EH3
990        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
991        #EH3 RETVAL=$?
992        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
993    
994        if test "x$RET_COMPILE" = x0 ; then
995          HAVE_NETCDF=t          HAVE_NETCDF=t
996      else      else
997          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
998          $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \          echo "try again with added '-lnetcdf'" > genmake_tnc.log
999              &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1000              $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1001            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1002            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1003                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1004                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1005          RET_COMPILE=$?          RET_COMPILE=$?
1006          test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1          cat genmake_tnc.log >> genmake_warnings
1007          RETVAL=$?          if test "x$RET_COMPILE" = x0 ; then
         if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then  
1008              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
1009              HAVE_NETCDF=t              HAVE_NETCDF=t
1010          else          else
1011            # try again with "-lnetcdff" added to the libs
1012                echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1013                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1014                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1015                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1016                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1017                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1018                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1019                RET_COMPILE=$?
1020              cat genmake_tnc.log >> genmake_warnings              cat genmake_tnc.log >> genmake_warnings
1021                if test "x$RET_COMPILE" = x0 ; then
1022                    LIBS="$LIBS -lnetcdff -lnetcdf"
1023                    HAVE_NETCDF=t
1024                fi
1025          fi          fi
1026      fi      fi
1027      rm -f genmake_tnc*      rm -f genmake_tnc*
# Line 728  PLATFORM= Line 1040  PLATFORM=
1040  LN=  LN=
1041  S64=  S64=
1042  KPP=  KPP=
1043  FC=  #FC=
1044  CC=  #CC=gcc
1045  CPP=  #CPP=
1046  LINK=  LINK=
1047  DEFINES=  DEFINES=
1048  PACKAGES=  PACKAGES=
1049  ENABLE=  ENABLE=
1050  DISABLE=  DISABLE=
1051  MAKEFILE=  # MAKEFILE=
1052  #MAKEDEPEND=  # MAKEDEPEND=
1053  PDEPEND=  PKG_DEPEND=
1054    PKG_GROUPS=
1055  DUMPSTATE=t  DUMPSTATE=t
 PDEFAULT=  
1056  OPTFILE=  OPTFILE=
1057  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1058  FFLAGS=  FFLAGS=
1059  FOPTIM=  FOPTIM=
1060    FEXTRAFLAGS=
1061    USE_EXTENDED_SRC=
1062    EXTENDED_SRC_FLAG=
1063  CFLAGS=  CFLAGS=
1064  KFLAGS1=  KFLAGS1=
1065  KFLAGS2=  KFLAGS2=
# Line 755  NOOPTFILES= Line 1070  NOOPTFILES=
1070  NOOPTFLAGS=  NOOPTFLAGS=
1071  MPI=  MPI=
1072  MPIPATH=  MPIPATH=
1073    OMP=
1074    OMPFLAG=
1075    USE_R4=
1076    TS=
1077    PAPIS=
1078    PCLS=
1079    FOOLAD=
1080    PAPI=
1081    PCL=
1082    HPMT=
1083    GSL=
1084    DEVEL=
1085    HAVE_TEST_L=
1086    
1087  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1088  HAVE_SYSTEM=  HAVE_SYSTEM=
1089  HAVE_FDATE=  HAVE_FDATE=
1090  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1091  HAVE_CLOC=  HAVE_CLOC=
1092    # HAVE_SETRLSTK=
1093    HAVE_STAT=
1094  HAVE_NETCDF=  HAVE_NETCDF=
1095  HAVE_ETIME=  HAVE_ETIME=
1096    IGNORE_TIME=
1097    
1098  MODS=  MODS=
1099  TOOLSDIR=  TOOLSDIR=
# Line 773  STANDARDDIRS="USE_THE_DEFAULT" Line 1104  STANDARDDIRS="USE_THE_DEFAULT"
1104  G2ARGS=  G2ARGS=
1105  BASH=  BASH=
1106  PWD=`pwd`  PWD=`pwd`
1107  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1108  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1109  THISHOSTNAME=`hostname`  EMBED_SRC=
1110    THISHOST=`hostname`
1111  THISCWD=`pwd`  THISCWD=`pwd`
1112  THISDATE=`date`  THISDATE=`date`
1113    THISUSER=`echo $USER`
1114    THISVER=
1115  MACHINE=`uname -a`  MACHINE=`uname -a`
1116  EXECUTABLE=  EXECUTABLE=
1117  EXEHOOK=  EXEHOOK=
# Line 803  FTL_TAF_FLAGS= Line 1137  FTL_TAF_FLAGS=
1137  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1138  TAMC_EXTRA=  TAMC_EXTRA=
1139    
   
1140  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1141  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS MAKEFILE MAKEDEPEND PLATFORM ROOTDIR MODS DISABLE ENABLE"
1142  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC IEEE USE_R4 TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"
1143    
1144  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1145  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1146  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1147  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD THISHOST THISUSER THISDATE THISVER MACHINE"
1148  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1149  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s7="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME"
1150    
1151  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1152  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 834  quick list of options, use "genmake -h" Line 1167  quick list of options, use "genmake -h"
1167    
1168  EOF  EOF
1169    
1170    #- clean-up previous genmake logfiles:
1171    rm -f genmake_state genmake_*optfile genmake_warnings genmake_errors
1172    
1173  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1174  gm_local="genmake_local"  gm_local="genmake_local"
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
1175  printf "  getting local config information:  "  printf "  getting local config information:  "
1176  if test -f $gm_local ; then  if test -f $gm_local ; then
1177      echo "using $gm_local"      echo "using $gm_local"
# Line 852  else Line 1182  else
1182      echo "none found"      echo "none found"
1183  fi  fi
1184    
1185  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1186  #parse_options  #parse_options
1187  ac_prev=  ac_prev=
1188  for ac_option in $@ ; do  for ac_option in "$@" ; do
1189    
1190      G2ARGS="$G2ARGS \"$ac_option\""      G2ARGS="$G2ARGS \"$ac_option\""
1191    
# Line 874  for ac_option in $@ ; do Line 1195  for ac_option in $@ ; do
1195          ac_prev=          ac_prev=
1196          continue          continue
1197      fi      fi
1198        
1199      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1200        
1201      case $ac_option in      case $ac_option in
1202                    
1203          -help | --help | -h | --h)          -help | --help | -h | --h)
# Line 895  for ac_option in $@ ; do Line 1216  for ac_option in $@ ; do
1216              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1217                    
1218          -pdepend | --pdepend)          -pdepend | --pdepend)
1219              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1220          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1221              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1222                    
1223          -pdefault | --pdefault)          -pgroups | --pgroups)
1224              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1225          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1226              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1227                    
1228          -make | --make | -m | --m)          -make | --make | -m | --m)
1229              ac_prev=MAKE ;;              ac_prev=MAKE ;;
# Line 986  for ac_option in $@ ; do Line 1307  for ac_option in $@ ; do
1307          -noieee | --noieee)          -noieee | --noieee)
1308              IEEE= ;;              IEEE= ;;
1309    
1310            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1311                USE_R4=true ;;
1312    
1313            -ts | --ts)
1314                TS=true ;;
1315            -papis | --papis)
1316                PAPIS=true ;;
1317            -pcls | --pcls)
1318                PCLS=true ;;
1319            -foolad | --foolad)
1320                FOOLAD=true ;;
1321            -papi | --papi)
1322                PAPI=true ;;
1323            -pcl | --pcl)
1324                PCL=true ;;
1325            -hpmt | --hpmt)
1326                HPMT=true ;;
1327    
1328            -gsl | --gsl)
1329                GSL=true ;;
1330    
1331            -devel | --devel)
1332                DEVEL=true ;;
1333    
1334          -mpi | --mpi)          -mpi | --mpi)
1335              MPI=true ;;              MPI=true ;;
1336          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1337              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1338              MPI=true ;;              MPI=true ;;
1339                    
1340  #       -jam | --jam)          -omp | --omp)
1341  #           JAM=1 ;;              OMP=true ;;
1342  #       -nojam | --nojam)          -omp=* | --omp=*)
1343  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1344                OMP=true ;;
1345                    
1346          -ds | --ds)          -ds | --ds)
1347              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 1009  for ac_option in $@ ; do Line 1355  for ac_option in $@ ; do
1355              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1356          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1357              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1358            
1359            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1360                IGNORE_TIME="-DIGNORE_TIME" ;;
1361    
1362            -es | --es | -embed-source | --embed-source)
1363                EMBED_SRC=t ;;
1364    
1365          -*)          -*)
1366              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 1021  for ac_option in $@ ; do Line 1373  for ac_option in $@ ; do
1373              ;;              ;;
1374                    
1375      esac      esac
1376        
1377  done  done
1378    
1379    
1380  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1381      echo      echo
1382      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1383      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1384      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1385      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/devel_HOWTO/"
1386        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1387        echo "WARNING: ignore \"./.genmakerc\" and continue."
1388      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1389  fi  fi
1390    
1391    #  Find the MITgcm ${ROOTDIR}
1392  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1393      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1394      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1395          ROOTDIR=".."          ROOTDIR=".."
1396      else      else
1397          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
# Line 1062  if test ! -d ${ROOTDIR} ; then Line 1415  if test ! -d ${ROOTDIR} ; then
1415      exit 1      exit 1
1416  fi  fi
1417    
1418    #  Find the MITgcm ${THISVER}
1419    version_file="${ROOTDIR}/doc/tag-index"
1420    if test -f $version_file ; then
1421        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1422    #-  remove ./BUILD_INFO.h file if older than version_file
1423        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1424            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1425            rm -f ./BUILD_INFO.h
1426        fi
1427    fi
1428    
1429    if test "x$MAKEFILE" = x ; then
1430        MAKEFILE="Makefile"
1431    fi
1432    
1433  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1434  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1435      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 1091  if test "x$OPTFILE" != xNONE ; then Line 1459  if test "x$OPTFILE" != xNONE ; then
1459      fi      fi
1460  fi  fi
1461    
 #  Check for broken systems that cannot correctly distinguish *.F and *.f files  
 # check_for_broken_Ff  
   
1462  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:  "
1463  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1464      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
# Line 1121  if test "x${AD_OPTFILE}" != xNONE ; then Line 1486  if test "x${AD_OPTFILE}" != xNONE ; then
1486      fi      fi
1487  fi  fi
1488    
1489    #====================================================================
1490    #  Set default values if not set by the optfile
1491    #
1492  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1493  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1494  if test ! "x$BASH" = x ; then  if test ! "x$BASH" = x ; then
# Line 1138  EOF Line 1506  EOF
1506      exit 1      exit 1
1507  fi  fi
1508  if test "x$CC" = x ; then  if test "x$CC" = x ; then
1509      cat <<EOF 1>&2      CC=cc
1510    #     cat <<EOF 1>&2
1511  Error: no C compiler: please specify using one of the following:  # Error: no C compiler: please specify using one of the following:
1512    1) within the options file ("CC=...") as specified by "-of=OPTFILE"  #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1513    2) the "-cc=XXX" command-line option  #   2) the "-cc=XXX" command-line option
1514    3) the "./genmake_local" file  #   3) the "./genmake_local" file
1515  EOF  # EOF
1516      exit 1  #     exit 1
1517  fi  fi
1518  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1519      LINK=$FC      LINK=$FC
# Line 1197  Error: The command "ln -s" failed -- ple Line 1565  Error: The command "ln -s" failed -- ple
1565  EOF  EOF
1566      exit 1      exit 1
1567  fi  fi
1568    test -L genmake_tlink > /dev/null 2>&1
1569    RETVAL=$?
1570    if test "x$RETVAL" = x0 ; then
1571        HAVE_TEST_L=t
1572    fi
1573  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1574    
1575  #  Check for broken *.F/*.f handling and fix if possible  #  Check for broken *.F/*.f handling and fix if possible
# Line 1206  if test ! "x$MPI" = x ; then Line 1579  if test ! "x$MPI" = x ; then
1579        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1580        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1581  fi  fi
1582    if test ! "x$OMP" = x ; then
1583          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1584          FFLAGS="$FFLAGS $OMPFLAG"
1585          F90FLAGS="$F90FLAGS $OMPFLAG"
1586          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1587    fi
1588    
1589    if test ! "x$USE_R4" = x ; then
1590          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1591          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1592    fi
1593    
1594    if test ! "x$TS" = x ; then
1595          echo "  Turning on timing per timestep"
1596          if test ! "x$FOOLAD" = x ; then
1597                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1598          else
1599                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1600          fi
1601          PACKAGES="$PACKAGES showflops"
1602    fi
1603    if test ! "x$PAPIS" = x ; then
1604          echo "  Turning on PAPI flop summary per timestep"
1605          echo "  Please make sure PAPIINC, PAPILIB are defined"
1606          if test ! "x$FOOLAD" = x ; then
1607                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1608          else
1609                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1610          fi
1611          INCLUDES="$INCLUDES $PAPIINC"
1612          LIBS="$LIBS $PAPILIB"
1613          PACKAGES="$PACKAGES showflops"
1614    fi
1615    if test ! "x$PCLS" = x ; then
1616          echo "  Turning on PCL counter summary per timestep"
1617          echo "  Please make sure PCLINC, PCLLIB are defined"
1618          if test ! "x$FOOLAD" = x ; then
1619                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1620          else
1621                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1622          fi
1623          INCLUDES="$INCLUDES $PCLINC"
1624          LIBS="$LIBS $PCLLIB"
1625          PACKAGES="$PACKAGES showflops"
1626    fi
1627    if test ! "x$PAPI" = x ; then
1628          if test ! "x$PAPIS" = x ; then
1629              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1630              echo "  Sticking with PAPI flop summary per timestep!"
1631          else
1632              echo "  Turning on performance analysis with PAPI"
1633              echo "  Please make sure PAPIINC, PAPILIB are defined"
1634              DEFINES="$DEFINES -DUSE_PAPI"
1635              INCLUDES="$INCLUDES $PAPIINC"
1636              LIBS="$LIBS $PAPILIB"
1637          fi
1638    fi
1639    if test ! "x$PCL" = x ; then
1640          if test ! "x$PCLS" = x ; then
1641              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1642              echo "  Sticking with PCL flop summary per timestep!"
1643          else
1644              echo "  Turning on performance analysis with PCL"
1645              echo "  Please make sure PCLINC, PCLLIB are defined"
1646              DEFINES="$DEFINES -DUSE_PCL"
1647              INCLUDES="$INCLUDES $PCLINC"
1648              LIBS="$LIBS $PCLLIB"
1649          fi
1650    fi
1651    if test ! "x$HPMT" = x ; then
1652          if test ! "x$PAPI" = x ; then
1653              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1654              echo "  Sticking with PAPI!"
1655          else if test ! "x$PCL" = x ; then
1656              echo "  PCL and the HPM Toolkit cannot co-exist!"
1657              echo "  Sticking with PCL!"
1658          else
1659              echo "  Turning on performance analysis with the HPM Toolkit"
1660              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1661              DEFINES="$DEFINES -DUSE_LIBHPM"
1662              INCLUDES="$INCLUDES $HPMTINC"
1663              LIBS="$LIBS $HPMTLIB"
1664          fi
1665          fi
1666    fi
1667    if test ! "x$GSL" = x ; then
1668          echo "  Turning on use of GSL to control floating point calculations"
1669          echo "  Please make sure GSLINC, GSLLIB are defined"
1670          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1671          INCLUDES="$INCLUDES $GSLINC"
1672          LIBS="$LIBS $GSLLIB"
1673    fi
1674    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1675    if test ! "x$USE_EXTENDED_SRC" = x ; then
1676          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1677          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1678    fi
1679    
1680  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1681  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1682  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1683        program hello        program hello
1684        call system('echo hi')        call system('echo hi')
1685        end        end
1686  EOF  EOF
1687  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1688  RETVAL=$?  RETVAL=$?
1689  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1690      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 1227  fi Line 1697  fi
1697  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1698    
1699  printf "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1700  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1701        program hello        program hello
1702        CHARACTER(128) string        CHARACTER*(128) string
1703        string = ' '        string = ' '
1704        call fdate( string )        call fdate( string )
1705        print *, string        print *, string
1706        end        end
1707  EOF  EOF
1708  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1709  RETVAL=$?  RETVAL=$?
1710  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1711      HAVE_FDATE=t      HAVE_FDATE=t
# Line 1248  fi Line 1718  fi
1718  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1719    
1720  printf "  Do we have the etime() command using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1721  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1722        program hello        program hello
1723        REAL*4 ACTUAL, TARRAY(2)        REAL*4 ACTUAL, TARRAY(2)
1724        EXTERNAL ETIME        EXTERNAL ETIME
# Line 1257  cat > genmake_tcomp.f <<EOF Line 1727  cat > genmake_tcomp.f <<EOF
1727        print *, tarray        print *, tarray
1728        end        end
1729  EOF  EOF
1730  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1731  RETVAL=$?  RETVAL=$?
1732  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1733      HAVE_ETIME=t      HAVE_ETIME=t
# Line 1275  if test "x$HAVE_CLOC" != x ; then Line 1745  if test "x$HAVE_CLOC" != x ; then
1745      echo "yes"      echo "yes"
1746  else  else
1747      echo "no"      echo "no"
1748        if test "x$EMBED_SRC" = xt ; then
1749            echo "    WARNING: you requested file embedding but it has"
1750            echo "      been disabled since C code cannot be called"
1751            EMBED_SRC=
1752        fi
1753    fi
1754    rm -f genmake_t*
1755    
1756    printf "  Can we unlimit the stack size using $FC...  "
1757    check_HAVE_SETRLSTK
1758    if test "x$HAVE_SETRLSTK" = xt ; then
1759        echo "yes"
1760    else
1761        echo "no"
1762    fi
1763    rm -f genmake_t*
1764    
1765    printf "  Can we register a signal handler using $FC...  "
1766    check_HAVE_SIGREG
1767    if test "x$HAVE_SIGREG" = xt ; then
1768        echo "yes"
1769    else
1770        echo "no"
1771    fi
1772    rm -f genmake_t*
1773    
1774    printf "  Can we use stat() through C calls...  "
1775    check_HAVE_STAT
1776    if test "x$HAVE_STAT" != x ; then
1777        echo "yes"
1778    else
1779        echo "no"
1780  fi  fi
1781  rm -f genmake_t*  rm -f genmake_t*
1782    
# Line 1285  if test "x$HAVE_NETCDF" != x ; then Line 1787  if test "x$HAVE_NETCDF" != x ; then
1787  else  else
1788      echo "no"      echo "no"
1789  fi  fi
1790    DEFINES="$DEFINES $IGNORE_TIME"
1791    
1792    if test "x$EMBED_SRC" = xt ; then
1793        build_embed_encode
1794    fi
1795    if test "x$EMBED_SRC" = xt ; then
1796        ENABLE="$ENABLE embed_files"
1797    fi
1798    
1799    
1800  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1801  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1802  for d in $MODS ; do  for d in $MODS ; do
1803      if test ! -d $d ; then      if test ! -d $d ; then
1804          echo          echo
1805          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1806          exit 1          exit 1
1807      else      else
1808          printf " $d"          printf "$d "
1809          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1810          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1811      fi      fi
1812  done  done
1813  echo  echo
1814    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1815  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1816      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1817  fi  fi
1818    
1819  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1820      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1821      if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then      if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1822          EXEDIR=../exe          EXEDIR=../exe
1823      else      else
# Line 1330  if test ! -d ${TOOLSDIR} ; then Line 1837  if test ! -d ${TOOLSDIR} ; then
1837      exit 1      exit 1
1838  fi  fi
1839  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1840      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1841        RETVAL=$?
1842        if test "x${RETVAL}" = x0 ; then
1843            S64='$(TOOLSDIR)/set64bitConst.sh'
1844        else
1845            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1846            RETVAL=$?
1847            if test "x${RETVAL}" = x0 ; then
1848                S64='$(TOOLSDIR)/set64bitConst.csh'
1849            else
1850                cat <<EOF
1851    
1852    ERROR: neither of the two default scripts:
1853    
1854        ${TOOLSDIR}/set64bitConst.sh
1855        ${TOOLSDIR}/set64bitConst.csh
1856    
1857      are working so please check paths or specify (with \$S64) a
1858      working version of this script.
1859    
1860    EOF
1861                exit 1
1862            fi
1863        fi
1864  fi  fi
1865  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1866    
1867  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1868    
1869    #  Set Standard Code Directories:
1870    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1871        STANDARDDIRS="eesupp model"
1872    fi
1873    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
1874    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
1875    ckM=$?
1876    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
1877    ckE=$?
1878    if test $ckM = 0 -a $ckE = 1 ; then
1879        STANDARDDIRS="$STANDARDDIRS eesupp"
1880    fi
1881    
1882  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
1883  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
1884  #  they appear as regular source code  #  they appear as regular source code
1885  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1886      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1887      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
1888        ) > make_eesupp.errors 2>&1
1889      RETVAL=$?      RETVAL=$?
1890      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1891          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 1352  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1896  if test -r $ROOTDIR"/eesupp/src/Makefile
1896      fi      fi
1897  fi  fi
1898    
1899  #same for exch2  #same for pkg/exch2 and pkg/regrid
1900  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
1901      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1902      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
1903      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
1904      if test "x${RETVAL}" = x0 ; then          ) > make_${pdir}.errors 2>&1
1905          rm -f make_exch2.errors          RETVAL=$?
1906      else          if test "x${RETVAL}" = x0 ; then
1907          echo "Error: problem encountered while building source files in exch2:"              rm -f make_${pdir}.errors
1908          cat make_exch2.errors 1>&2          else
1909          exit 1              echo "Error: problem encountered while building source files in pkg/${pdir}:"
1910                cat make_${pdir}.errors 1>&2
1911                exit 1
1912            fi
1913      fi      fi
1914  fi  done
1915    
1916  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1917  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
1918      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
1919      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
1920          PDEPEND=$tmp  fi
1921      else  if  test "x${PKG_DEPEND}" = x ; then
1922          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
1923          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
1924  else  else
1925      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
1926          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
1927          exit 1          exit 1
1928      fi      fi
1929        echo "  getting package dependency info from  $PKG_DEPEND"
1930    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
1931        get_pdepend_list $PKG_DEPEND
1932  fi  fi
1933  echo "  getting package dependency info from  $PDEPEND"  
1934  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
1935  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
1936  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
1937      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
1938      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
1939  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
1940  if test ! "x${RETVAL}" = x0 ; then  fi
1941      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
1942      exit 1          echo "Warning:  No package groups information was specified."
1943            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
1944    else
1945        if test ! -r ${PKG_GROUPS} ; then
1946            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
1947            exit 1
1948        fi
1949        echo "  getting package groups info from      $PKG_GROUPS"
1950  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
1951    
1952  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
1953  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
1954  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
1955  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
1956      for i in "." $MODS ; do      for i in "." $MODS ; do
1957          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
1958                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
1959                  break                  break
1960          fi          fi
1961      done      done
1962  fi  fi
1963  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
1964      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
1965  fi      if test "x${PKG_GROUPS}" = x ; then
1966  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
1967      echo "    default packages file disabled"          exit 1
1968        fi
1969  else  else
1970      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
1971          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
1972            exit 1
1973      else      else
1974          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
1975          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1976          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1977          RETVAL=$?          RETVAL=$?
1978          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1979              printf "Error: can't parse default package list "              printf "Error: can't parse package list "
1980              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
1981              exit 1              exit 1
1982          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         RET=1  
         while test $RET = 1 ; do expand_pkg_groups; RET=$?; done  
         echo "    after group expansion packages are:  $PACKAGES"  
1983      fi      fi
1984  fi  fi
1985    for i in $pkg_list ; do
1986        PACKAGES="$PACKAGES $i"
1987    done
1988    echo     "    before group expansion packages are:$PACKAGES"
1989    if test "x${PKG_GROUPS}" != x ; then
1990        RET=1
1991        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1992        echo "    after group expansion packages are: $PACKAGES"
1993    fi
1994    
1995  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1996    echo "" > ./.tmp_pack
1997  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1998      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1999  done  done
# Line 1463  PACKAGES="$PACKAGES $ENABLE" Line 2021  PACKAGES="$PACKAGES $ENABLE"
2021  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2022      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2023      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2024          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2025          exit 1          exit 1
2026      fi      fi
2027      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
# Line 1473  for i in `grep -v "-" ./.tmp_pack | sort Line 2031  for i in `grep -v "-" ./.tmp_pack | sort
2031      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2032  done  done
2033  rm -f ./.tmp_pack  rm -f ./.tmp_pack
2034  echo "    packages are:  $PACKAGES"  echo "    packages are: $PACKAGES"
2035    
2036    #  Check for package MNC: if NetCDF is available, then build the MNC
2037    #  template files ; otherwise, delete mnc from the list of packages.
2038    echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2039    mnc_in=$?
2040    if test "x$HAVE_NETCDF" != xt ; then
2041        if test "x$mnc_in" = x0 ; then
2042            cat <<EOF
2043    *********************************************************************
2044    WARNING: the "mnc" package was enabled but tests failed to compile
2045      NetCDF applications.  Please check that:
2046    
2047      1) NetCDF is correctly installed for this compiler and
2048      2) the LIBS variable (within the "optfile") specifies the correct
2049           NetCDF library to link against.
2050    
2051      Due to this failure, the "mnc" package is now DISABLED.
2052    *********************************************************************
2053    EOF
2054            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2055            DISABLE="$DISABLE mnc"
2056        else
2057        #  this prevent to add mnc (due to pdepend rules) if not available
2058            DISABLE="$DISABLE mnc"
2059        fi
2060    else
2061        # we have NetCDF, we try to build MNC template files
2062        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2063        RETVAL=$?
2064        if test "x${RETVAL}" = x0 ; then
2065            rm -f make_mnc.errors
2066        else
2067            echo "Error: problem encountered while building source files in pkg/mnc:"
2068            cat make_mnc.errors 1>&2
2069            if test "x$mnc_in" = x0 ; then
2070                exit 1
2071            else
2072                DISABLE="$DISABLE mnc"
2073            fi
2074        fi
2075    fi
2076    
2077    #  Check for package PROFILES: if NetCDF is not available,
2078    #  then delete profiles from the list of available packages.
2079    if test "x$HAVE_NETCDF" != xt ; then
2080        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2081        RETVAL=$?
2082        if test "x$RETVAL" = x0 ; then
2083            cat <<EOF
2084    *********************************************************************
2085    WARNING: the "profiles" package was enabled but tests failed to
2086      compile NetCDF applications.  Please check that:
2087    
2088      1) NetCDF is correctly installed for this compiler and
2089      2) the LIBS variable (within the "optfile") specifies the correct
2090           NetCDF library to link against.
2091    
2092      Due to this failure, the "profiles" package is now DISABLED.
2093    *********************************************************************
2094    EOF
2095            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2096            DISABLE="$DISABLE profiles"
2097        else
2098        #  this prevent to add profiles (due to pdepend rules) if not available
2099            DISABLE="$DISABLE profiles"
2100        fi
2101    fi
2102    
2103  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2104  ck=    echo "  applying package dependency rules"
2105  while test "x$ck" != xtt ; do    ck=
2106      while test "x$ck" != xtt ; do
2107      i=0      i=0
2108      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2109      rtot=$nname      rtot=$nname
2110      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2111    
2112          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2113          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1493  while test "x$ck" != xtt ; do Line 2119  while test "x$ck" != xtt ; do
2119                  pin="t"                  pin="t"
2120              fi              fi
2121          done          done
2122            #  or in the current $STANDARDDIRS list?
2123            for p in $STANDARDDIRS ; do
2124                if test "x$p" = "x$pname" ; then pin="t" ; fi
2125            done
2126    
2127          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2128          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 1515  while test "x$ck" != xtt ; do Line 2145  while test "x$ck" != xtt ; do
2145    
2146          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2147          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2148                #echo "   " $pname ": need to add :" $dname
2149              in_dis="f"              in_dis="f"
2150              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2151                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1535  while test "x$ck" != xtt ; do Line 2166  while test "x$ck" != xtt ; do
2166          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2167          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2168              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2169              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2170              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2171              exit 1              exit 1
2172          fi          fi
# Line 1543  while test "x$ck" != xtt ; do Line 2174  while test "x$ck" != xtt ; do
2174          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2175      done      done
2176      ck=$ck"t"      ck=$ck"t"
2177  done    done
2178  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2179    fi
2180  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2181      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2182      if test -d $adr ; then      if test -d $adr ; then
# Line 1559  for i in $PACKAGES ; do Line 2191  for i in $PACKAGES ; do
2191      fi      fi
2192  done  done
2193    
 #  Build MNC templates and check for ability to build and use NetCDF  
 echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  
 RETVAL=$?  
 if test "x$RETVAL" = x0 ; then  
     ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         rm -f make_mnc.errors  
     else  
         echo "Error: problem encountered while building source files in pkg/mnc:"  
         cat make_mnc.errors 1>&2  
         exit 1  
     fi  
     if test "x$HAVE_NETCDF" != xt ; then  
         cat <<EOF  
   
 WARNING: the "mnc" package has been enabled but tests failed to  
   compile and/or execute NetCDF applications.  Please check that:  
   
   1) NetCDF is installed for your compiler and  
   2) the LIBS variable (within the 'optfile") specifies the correct  
        NetCDF library to link against.  
     
 EOF  
     fi  
 fi  
   
2194  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2195  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2196  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2197  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2198  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2199  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2200  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 1605  for n in $names ; do Line 2210  for n in $names ; do
2210              fi              fi
2211          done          done
2212          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2213              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2214              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2215          fi          fi
2216      fi      fi
2217  done  done
2218  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2219  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2220      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2221      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2222  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2223    
2224  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2225      case $i in      case $i in
2226          aim_v23)          aim_v23)
2227              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2228              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
# Line 1627  for i in $PACKAGES ; do Line 2232  for i in $PACKAGES ; do
2232    
2233  done  done
2234    
2235  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2236  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2237  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2238      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2239          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 1686  fi Line 2288  fi
2288    
2289  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2290  #  compiler.  #  compiler.
2291  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2292      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2293  fi  fi
2294  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2295    touch adSrcFiles.tmp
2296  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2297      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2298      for j in $list_files ; do      for j in $list_files ; do
2299          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2300      done      done
2301  done  done
2302    if test ! "x"$FS = "x.f" ; then
2303        cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2304        mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2305    fi
2306    
2307  echo  echo
2308  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
# Line 1707  for i in $INCLUDEDIRS ; do Line 2313  for i in $INCLUDEDIRS ; do
2313      fi      fi
2314  done  done
2315    
2316    if test ! "x$DIVA" = x ; then
2317        echo "  Creating the pseudo-MPI include directory"
2318        INCLUDES="-I./mpi_headers $INCLUDES"
2319        rm -rf ./mpi_headers
2320        mkdir -p ./mpi_headers
2321    
2322        if test "x$MPIINCLUDEDIR" = x ; then
2323            if test "x$MPIHOME" = x ; then
2324                MPIHOME='/usr'
2325            fi
2326            MPIINCLUDEDIR='$MPIHOME/include'
2327        fi
2328    
2329        if test -r $MPIINCLUDEDIR/mpif.h ; then
2330            for i in $MPI_HEADER_FILES; do
2331                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2332            done
2333    
2334            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2335        else
2336            echo " We cannot create a copy of mpif.h!"
2337    #       exit -1
2338        fi
2339    fi
2340    
2341  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2342  rm -rf .links.tmp  rm -rf .links.tmp
2343  mkdir .links.tmp  mkdir .links.tmp
2344    touch .links.tmp/foo
2345    if test ! -r ".links.tmp/foo" ; then
2346        echo
2347        echo "ERROR : something is wrong with your directory permissions or"
2348        echo "   your user file-creation mask (\"umask\") since creating a"
2349        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2350        echo "   not working.  Please try setting your umask to something"
2351        echo "   sane such as:"
2352        echo
2353        echo "      umask 0002"
2354        echo
2355        echo "   and please verify that you have the proper permissions for"
2356        echo "   creating sub-directories and then reading files created"
2357        echo "   within them."
2358        echo
2359        exit 1
2360    fi
2361    rm -f .links.tmp/foo
2362    
2363    if test "x$OPENAD" != x ; then
2364        OAD_DONT_COMPILE="/dev/null"
2365        OAD_DONT_TRANSFORM="/dev/null"
2366        OAD_KEEP_ORIGINAL="/dev/null"
2367        OAD_CB2M_FILES="/dev/null"
2368        echo "  looking for dontCompile file:  "
2369        for i in "." $MODS ; do
2370            if test -r $i"/dontCompile" ; then
2371                OAD_DONT_COMPILE=$i"/dontCompile"
2372                echo "     found $OAD_DONT_COMPILE"
2373                break
2374            fi
2375        done
2376        echo "  looking for dontTransform file:  "
2377        for i in "." $MODS ; do
2378            if test -r $i"/dontTransform" ; then
2379                OAD_DONT_TRANSFORM=$i"/dontTransform"
2380                echo "     found $OAD_DONT_TRANSFORM"
2381                break
2382            fi
2383        done
2384        echo "  looking for keepOriginal file:  "
2385        for i in "." $MODS ; do
2386            if test -r $i"/keepOriginal" ; then
2387                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2388                echo "     found $OAD_KEEP_ORIGINAL"
2389                break
2390            fi
2391        done
2392        echo "  looking for cb2mFiles:  "
2393        for i in "." $MODS ; do
2394            if test -r $i"/cb2mFiles" ; then
2395                OAD_CB2M_FILES=$i"/cb2mFiles"
2396                echo "     found $OAD_CB2M_FILES"
2397                break
2398            fi
2399        done
2400        echo "   OpenAD exceptions:  "
2401    fi
2402    
2403  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2404  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2405  printf 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2406  printf 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2407  printf 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2408  printf 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2409  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2410    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2411  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2412  for d in $alldirs ; do  for d in $alldirs ; do
2413      deplist=      deplist=
2414      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2415      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2416        if test "x$OPENAD" != x ; then
2417            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2418        fi
2419      for sf in $sfiles ; do      for sf in $sfiles ; do
2420          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2421              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2422                    ignore_f=f
2423                  case $d/$sf in                  case $d/$sf in
2424                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2425                            ignore_f=t
2426                          ;;                          ;;
2427                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2428                            ignore_f=t
2429                          ;;                          ;;
2430                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2431                            ignore_f=t
2432                            ;;
2433                      ./BUILD_INFO.h)
2434                            ignore_f=t
2435                            ;;
2436                      ./EMBEDDED_FILES.h)
2437                            ignore_f=t
2438                          ;;                          ;;
2439                    *)                    *)
2440                          touch .links.tmp/$sf                          #  For the local directory *ONLY*,
2441                          deplist="$deplist $sf"                          #  ignore all soft-links
2442                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2443                                ignore_f=t
2444                            else
2445                                touch .links.tmp/$sf
2446                                deplist="$deplist $sf"
2447                            fi
2448                          ;;                          ;;
2449                  esac                  esac
2450                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  if test "x$ignore_f" = xf ; then
2451                  case $extn in                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2452                      F)                      case $extn in
2453                          echo    " \\"  >> srclist.inc                        F)
2454                          printf " $sf" >> srclist.inc                          echo    " \\"  >> F77srclist.tmp
2455                            printf " $sf" >> F77srclist.tmp
2456                            if test "x$OPENAD" != x ; then
2457                                basename=${sf%%.F}
2458                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2459                                if test -z "$isAD" ; then
2460                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2461                                    if test -z "$toBeIgnored" ; then
2462                                        echo    " \\"  >> nonADF77srclist.tmp
2463                                        printf " $sf" >> nonADF77srclist.tmp
2464                                    else
2465                                        echo "    not to be compiled   :  $sf"
2466                                    fi
2467                                else # file is initially listed as an AD file we want to exclude it
2468                                     # or we want to retain the untransformed version
2469                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2470                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2471                                    if test -n "$notToBeTransformed"; then
2472                                        echo "    not to be transformed:  $sf"
2473                                    fi
2474                                    if test -n "$untransformedVersionToBeKept" ; then
2475                                        echo "    original to be kept  :  $sf"
2476                                    fi
2477                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2478                                        echo    " \\"  >> nonADF77srclist.tmp
2479                                        printf " $sf" >> nonADF77srclist.tmp
2480                                    fi
2481                                fi
2482                            fi
2483                          ;;                          ;;
2484                      F90)                      F90)
2485                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2486                          printf " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2487                          ;;                          ;;
2488                      c)                      c)
2489                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2490                          printf " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2491                          ;;                          ;;
2492                      h)                      h)
2493                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2494                          printf " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2495                          ;;                          ;;
2496                      flow)                      flow)
2497                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.tmp
2498                          printf " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.tmp
2499                          ;;                          ;;
2500                  esac                     esac
2501                    fi
2502              fi              fi
2503          fi          fi
2504      done      done
2505      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2506          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2507            echo "" >> srclinks.tmp
2508          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2509          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2510          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2511    # This may happen when make thinks that a header file has to be "remade"
2512    # because a module it depends on has changed.  In this case we do nothing.
2513            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2514          fi
2515      fi      fi
2516  done  done
2517  rm -rf .links.tmp  rm -rf .links.tmp
2518  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2519  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2520  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2521  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2522  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2523    echo "" >> ad_flow_files.tmp
2524    
2525    CMDLINE=$0
2526    for xx in "$@" ; do nw=`echo $xx | wc -w`
2527        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2528                            else CMDLINE="$CMDLINE '$xx'" ; fi
2529    done
2530    
2531  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2532      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2533  fi  fi
2534  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2535  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 1786  echo "#    $MACHINE" >> $MAKEFILE Line 2537  echo "#    $MACHINE" >> $MAKEFILE
2537  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2538  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2539  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2540  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2541  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2542  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2543    
2544  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2545  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
# Line 1797  EXE_SVD=$EXECUTABLE"_svd" Line 2548  EXE_SVD=$EXECUTABLE"_svd"
2548  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2549  #  #
2550  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2551  #  #
2552  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2553  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2554  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 1817  cat >>$MAKEFILE <<EOF Line 2568  cat >>$MAKEFILE <<EOF
2568  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2569    
2570  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2571  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2572  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2573  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2574  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
# Line 1834  ENABLED_PACKAGES = ${ENABLED_PACKAGES} Line 2585  ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2585  DISABLED_PACKAGES = ${DISABLED_PACKAGES}  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2586    
2587  # These files are created by Makefile  # These files are created by Makefile
2588  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2589  EOF  EOF
2590    
2591  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2592        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2593    else
2594        echo "EMBEDDED_FILES = " >>$MAKEFILE
2595    fi
2596    
2597  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2598  # Unix ln (link)  # Unix ln (link)
2599  LN = ${LN}  LN = ${LN}
# Line 1853  KPP = ${KPP} Line 2607  KPP = ${KPP}
2607  FC = ${FC}  FC = ${FC}
2608  # Fortran compiler  # Fortran compiler
2609  F90C = ${F90C}  F90C = ${F90C}
2610    # C compiler
2611    CC = ${CC}
2612  # Link editor  # Link editor
2613  LINK = ${LINK} ${LDADD}  LINK = ${LINK} ${LDADD}
2614    
# Line 1864  INCLUDES = ${INCLUDES} Line 2620  INCLUDES = ${INCLUDES}
2620  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2621  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2622  # Optim./debug for FC  # Optim./debug for FC
2623  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2624  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2625  # Optim./debug for FC  # Optim./debug for FC
2626  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2627  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2628    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2629  # Flags for CC  # Flags for CC
2630  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2631  # Files that should not be optimized  # Files that should not be optimized
2632  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2633  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2634  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2635  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2636  # Name of the Mekfile  # Name of the Mekfile
2637  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2638    
2639  EOF  EOF
2640    
2641  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2642  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2643  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2644  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2645  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2646    cat ad_flow_files.tmp   >> $MAKEFILE
2647    
2648    rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2649    
2650  echo >> $MAKEFILE  echo >> $MAKEFILE
2651  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  
2652  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE  # add definitions for preprocessed sources
2653  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  # and note that not all systems allow case sensitive extensions
2654    # hence the $FS and $FS90 here.
2655    # for fixed format f90 files we use ff90 or FF90 resp
2656    # but these are not expected to be the original source files
2657    
2658    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2659    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2660    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2661    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2662  echo >> $MAKEFILE  echo >> $MAKEFILE
2663  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2664  echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
 rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
 rm -f ad_flow_files.inc  
2665    
2666  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2667    
2668  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2669  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2670          @echo Creating \$@ ...          @echo Creating \$@ ...
2671          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2672  depend:  depend:
2673          @make links          @make links
2674          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2675          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2676          -rm -f makedepend.out          -rm -f makedepend.out
2677    
2678  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  lib: libmitgcmuv.a
2679    
2680  small_f: \$(F77FILES) \$(F90FILES)  libmitgcmuv.a: \$(OBJFILES)
2681            ar rcv libmitgcmuv.a \$(OBJFILES)
2682            ar d   libmitgcmuv.a main.o
2683    
2684    links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2685    
2686    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2687    
2688  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2689          @printf 'running ... '          @printf 'running ... '
2690          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2691    
2692  clean:  clean:
2693          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2694            -rm -rf *.o
2695            -rm -rf *.$FS *.flowdir
2696            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2697  Clean:  Clean:
2698          @make clean          @make clean
2699          @make cleanlinks          @make cleanlinks
2700          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES)
2701          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f make.log run.log f90mkdepend.log *.bak "$MAKEFILE.old"
2702            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2703  CLEAN:  CLEAN:
2704          @make Clean          @make Clean
2705            -rm -f genmake_state genmake_*optfile genmake_warnings genmake_errors
2706          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2707          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2708          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2709          -rm -f \$(EXECUTABLE) output.txt STD*          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2710            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2711            -rm -rf mnc_test_*
2712    
2713  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2714  makefile:  makefile:
# Line 1936  makefile: Line 2716  makefile:
2716  cleanlinks:  cleanlinks:
2717          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2718    
2719  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2720  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2721          @echo Creating \$@ ...          @echo Creating \$@ ...
2722          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
# Line 1947  FC_NAMEMANGLE.h: Line 2727  FC_NAMEMANGLE.h:
2727          @echo Creating \$@ ...          @echo Creating \$@ ...
2728          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
2729    
2730    BUILD_INFO.h:
2731            @echo Creating \$@ ...
2732    EOF
2733    
2734    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2735    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2736    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2737    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2738    
2739    if test "x$EMBED_SRC" = xt ; then
2740        cat >>$MAKEFILE <<EOF
2741    
2742    decode_files.o : EMBEDDED_FILES.h
2743    
2744    ##  \$(F77_PP_SRC_FILES)
2745    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2746            @echo Creating \$@ ...
2747            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2748            -rm -f all_fF.tar.gz
2749            -gzip all_fF.tar
2750    
2751    EMBEDDED_FILES.h : all_fF.tar.gz
2752            @echo Creating \$@ ...
2753            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2754    
2755    EOF
2756    fi
2757    
2758    cat >>$MAKEFILE <<EOF
2759    
2760  # The normal chain of rules is (  .F - .$FS - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )
2761    
2762  %.o : %.F  ## This nullifies any default implicit rules concerning these two file types:
2763    ## %.o : %.F
2764    
2765  .F.$FS:  .F.$FS:
2766          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
# Line 1957  FC_NAMEMANGLE.h: Line 2768  FC_NAMEMANGLE.h:
2768          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2769  .F90.$FS90:  .F90.$FS90:
2770          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2771    .FF90.f$FS90:
2772            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2773  .$FS90.o:  .$FS90.o:
2774          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2775    .f$FS90.o:
2776            cp \$< \$(basename  \$<).f90
2777            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2778  .c.o:  .c.o:
2779          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2780    .flow.flowdir:
2781            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2782    
2783  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2784  .F.p:  .F.p:
# Line 1968  FC_NAMEMANGLE.h: Line 2786  FC_NAMEMANGLE.h:
2786  .p.$FS:  .p.$FS:
2787          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2788    
2789    EOF
2790    
2791  #=========================================  #=========================================
2792  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2793    #===  for TAMC/TAF  ======================
2794    
2795    if test "x$OPENAD" = x ; then
2796    
2797    cat >>$MAKEFILE <<EOF
2798    
2799  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2800  TAF            = ${TAF}  TAF            = ${TAF}
# Line 1984  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2809  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2809  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2810  for i in $ad_vars ; do  for i in $ad_vars ; do
2811      name=$i      name=$i
2812      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2813      eval $t1      eval $t1
2814      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2815      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2816  done  done
2817    
2818  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2819  echo >> $MAKEFILE  echo >> $MAKEFILE
2820  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2821  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2822  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2823      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2824      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2825  done  done
2826  echo >> $MAKEFILE  echo >> $MAKEFILE
2827  rm -f ad_files  rm -f adSrcFiles.tmp
2828    
2829  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2830    
2831  # ... AD ...  # ... AD ...
2832  adall: ad_taf  adall: \$(EXE_AD)
2833  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
2834  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2835    
2836  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
2837          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2838          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2839          -rm -f ad_config.template          -rm -f ad_config.template
2840          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2841          @make \$(AD_FLOW_FILES)          @make \$(FLOFILES)
2842          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
2843    
2844  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
2845          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2846          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
2847            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2848    
2849  adtafonly:  adtafonly:
2850          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2851          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
2852            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2853  ad_taf: ad_taf_output.o \$(OBJFILES)  
2854          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2855            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2856  ad_tamc_output.f: ad_input_code.f  
2857          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f  ad_tamc_output.$FS: ad_input_code.$FS
2858          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2859            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2860    
2861  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2862          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2863    
2864    adonlyfwd:
2865            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2866    
2867    adtrick:
2868            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2869    
2870  # ... FTL ...  # ... FTL ...
2871  ftlall: ftl_taf  ftlall: ftl_taf
2872  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
2873  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
2874    
2875  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2876          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2877          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2878          -rm -f ftl_config.template          -rm -f ftl_config.template
2879          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2880          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2881          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2882    
2883  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
2884          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2885          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          ls -l ftl_input_code_ftl.$FS
2886            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2887    
2888  ftltafonly:  ftltafonly:
2889          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2890          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          ls -l ftl_input_code_ftl.$FS
2891            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2892    
2893  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2894          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2895    
2896  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.$FS: ftl_input_code.$FS
2897          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2898          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2899    
2900  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2901          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2902    
2903    
2904  # ... SVD ...  # ... SVD ...
2905  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2906  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2907            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2908    svdall: svd_touch svd_taf
2909    
2910  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
2911          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2912    
2913            @echo "--->>> Only COMPILE svd code! <<<---"
2914            @echo "--->>> Assumes you previously <<<---"
2915            @echo "--->>> did make svdtaf        <<<---"
2916    
2917    svd_touch:
2918            @echo "--->>> Only COMPILE svd code! <<<---"
2919            @echo "--->>> Assumes you previously <<<---"
2920            @echo "--->>> did make svdtaf        <<<---"
2921            touch ad_taf_output.$FS ftl_taf_output.$FS
2922            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2923            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2924            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2925            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2926            -rm -f ftl_config.template
2927    
2928  #=========================================  EOF
2929    
2930    fi
2931    
2932    #===  for OpenAD  ========================
2933    
2934    if test "x$OPENAD" != x ; then
2935    
2936    # ============ begin OpenAD specific section ==============
2937    
2938    cat >>$MAKEFILE <<EOF
2939    
2940    # all the source files linked from the various locations:
2941    ALL_LINKED_FILES= \
2942    \$(F77_SRC_FILES) \
2943    \$(C_SRC_FILES) \
2944    \$(H_SRC_FILES) \
2945    \$(F90_SRC_FILES) \
2946    \$(SPECIAL_FILES)
2947    
2948    ifndef OPENADROOT
2949      \$(error "Error:  environment variable OPENADROOT not defined!")
2950    endif
2951    
2952    ifndef XAIFSCHEMAROOT
2953      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2954    endif
2955    
2956    ifndef XAIFBOOSTERROOT
2957      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2958    endif
2959    
2960  EOF  EOF
2961    
2962    echo "  Add the source list for common block to module conversion "
2963    echo >> $MAKEFILE
2964    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2965    for i in `cat ${OAD_CB2M_FILES}` ; do
2966      echo    " \\" >> $MAKEFILE
2967      printf " $i" >> $MAKEFILE
2968    done
2969    echo >> $MAKEFILE
2970    
2971    echo "  Add the source list for AD code generation"
2972    echo >> $MAKEFILE
2973    printf "AD_FILES = " >> $MAKEFILE
2974    for i in `cat ${OAD_CB2M_FILES}` ; do
2975      echo    " \\" >> $MAKEFILE
2976      printf " ${i}_mod.f$FS90" >> $MAKEFILE
2977    done
2978    AD_FILES=`cat adSrcFiles.tmp`
2979    for i in $AD_FILES ; do
2980      basename=${i%%.f}
2981      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
2982      if test -z "$toBeIgnored" ; then
2983        echo    " \\" >> $MAKEFILE
2984        printf " $i" >> $MAKEFILE
2985      fi
2986    done
2987    echo >> $MAKEFILE
2988    rm -f adSrcFiles.tmp
2989    
2990    cat >>$MAKEFILE <<EOF
2991    
2992    adAll: \$(EXE_AD)
2993    .PHONY: adAll
2994    
2995    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
2996    
2997    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
2998    
2999    .PHONY: adDepend
3000    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3001            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3002            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3003            -rm -f makedepend.out
3004    
3005    OPENAD_SUPPORT_F90_SRC_FILES = \
3006    w2f__types.F90 \
3007    OAD_active.F90 \
3008    OAD_cp.F90 \
3009    OAD_rev.F90 \
3010    OAD_tape.F90
3011    
3012    OPENAD_SUPPORT_C_SRC_FILES = \
3013    iaddr.c \
3014    timeRatio.c
3015    
3016    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3017            cat \$^ > \$@
3018    
3019    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3020            cat \$^ > \$@
3021    
3022    f95_test.out: f95_test_mods.f90 f95_test.f90
3023            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3024            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3025    
3026    # the file included below is created by the
3027    # postProcessor and its inclusion sets the
3028    # variable POSTPROCESSEDFILES
3029    # used below. Because the file is made during
3030    # make it won't be read until the second (recursive)
3031    # invocation in the rule below
3032    -include postProcess.make
3033    
3034    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)
3035    
3036    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3037    
3038    postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)
3039    ifeq (\$(MAKELEVEL),0)
3040            \$(MAKE) adAll
3041    else
3042            touch \$@
3043    endif
3044    
3045    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)
3046    ifeq (\$(MAKELEVEL),1)
3047            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3048    else
3049            touch \$@
3050    endif
3051    
3052    # makefile debug rule
3053    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3054    .PHONY: openad
3055    
3056    # create the module files
3057    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3058            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3059    
3060    # create the header files
3061    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3062            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3063    
3064    # change everybody else to use the new module files:
3065    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3066            ../OAD_support/cb2mUseModules.bash $< ${MPI}
3067    
3068    # makefile debug rule
3069    small_f: \$(CB2M_F90_PP_SRC_FILES)
3070    .PHONY: small_f
3071    
3072    ad_output.txt: \$(EXE_AD)
3073            @printf 'linking data files ... '
3074            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3075            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3076            @printf 'running ... '
3077            @./\$(EXE_AD) > \$@
3078    
3079    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3080    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3081            cat \$^ > \$@
3082    
3083    # strip all comments and blanks to reduce
3084    # the file size in order to reduce perl's memory requirements
3085    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3086            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3087    
3088    # mfef90 preprocessing
3089    # expand statement functions
3090    # expose mfef90 specific substring handling
3091    # add the w2f__types module
3092    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3093            ./mfef90 -r8 -z -F -N132 \$<
3094            mv \$<.B \$(basename \$<).B
3095            ./whirl2f -openad \$(basename \$<).B
3096            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3097    
3098    # canonicalizer
3099    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3100            ./preProcess.py --timing --r8 -H -S \$< -o \$@
3101    
3102    # F -> WHIRL
3103    # note that the canonicalized version cuts off at col 72
3104    # doing this also for string constants which is ok as long
3105    # as we are in fixed mode and cut of exactly there.
3106    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3107    # characters respectively.
3108    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3109            ./mfef90 -r8 -z -F \$<
3110            mv \$<.B \$@
3111    
3112    # WHIRL -> XAIF
3113    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3114            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3115    
3116    # XAIF -> XAIF'
3117    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3118            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3119    
3120    # XAIF' -> WHIRL'
3121    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3122            ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<
3123    
3124    # WHIRL' -> F'
3125    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3126            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3127    
3128    # insert template directives
3129    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3130            ../OAD_support/insertTemplateDir.bash \$< \$@
3131    
3132    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3133    # postprocess F'
3134    postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3135            # the target is a placeholder to signal execution of the rule
3136            touch \$@
3137            # this step also creates the file postProcess.make but we cannot
3138            # name it as the target or else make will try to remake it for
3139            # the include directive above for any rule, e.g. make clean
3140            ./postProcess.py --progress --timing --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<
3141    
3142    # setup some links
3143    %.xsd:
3144            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3145    
3146    mfef90:
3147            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3148    
3149    # link the support files:
3150    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3151            \$(LN) ../OAD_support/\$@ .
3152    
3153    whirl2xaif xaif2whirl:
3154            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3155    
3156    preProcess.py postProcess.py:
3157            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3158    
3159    whirl2f whirl2f_be:
3160            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3161    
3162    oadDriver:
3163            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3164    
3165    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)
3166    
3167    # ============ end OpenAD specific section ==============
3168    
3169    EOF
3170    
3171    fi
3172    
3173    #=========================================
3174    
3175  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3176      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3177  fi  fi
# Line 2114  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3207  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3207  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3208    
3209  # Create special header files  # Create special header files
3210  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3211  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3212      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3213  else  else

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