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revision 1.204 by jmc, Wed Mar 10 15:49:54 2010 UTC revision 1.268 by jmc, Sun Aug 10 16:46:04 2014 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -oad | --oad
23              Generate a Makefile for an OpenAD built
24    
25        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
26          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
27              Use "NAME" as the adoptfile.  By default, the file at
28              "tools/adjoint_options/adjoint_oad" (for OpenAD built) or
29              "tools/adjoint_options/adjoint_default" will be used.
30    
31        -nooptfile | --nooptfile
32          -optfile NAME | --optfile NAME | -of NAME | --of NAME
33          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
34              Use "NAME" as the optfile.  By default, an attempt will be
35              made to find an appropriate "standard" optfile in the
36              tools/build_options/ directory.
37    
38        -pdepend NAME | --pdepend NAME
39          -pdepend=NAME | --pdepend=NAME
40              Get package dependency information from "NAME".
41    
42        -pgroups NAME | --pgroups NAME
43          -pgroups=NAME | --pgroups=NAME
44              Get the package groups information from "NAME".
45    
46        -bash NAME
47              Explicitly specify the Bourne or BASH shell to use
48    
49        -make NAME | -m NAME
50          --make=NAME | -m=NAME
51              Use "NAME" for the MAKE program. The default is "make" but
52              many platforms, "gmake" is the preferred choice.
53    
54        -makefile NAME | -mf NAME
55          --makefile=NAME | -mf=NAME
56              Call the makefile "NAME".  The default is "Makefile".
57    
58        -makedepend NAME | -md NAME
59          --makedepend=NAME | -md=NAME
60              Use "NAME" for the MAKEDEPEND program.
61    
62        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
63          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
64              Specify the location of the MITgcm ROOTDIR as "NAME".
65              By default, genamke will try to find the location by
66              looking in parent directories (up to the 5th parent).
67    
68        -mods NAME | --mods NAME | -mo NAME | --mo NAME
69          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
70              Here, "NAME" specifies a list of directories that are
71              used for additional source code.  Files found in the
72              "mods list" are given preference over files of the same
73              name found elsewhere.
74    
75        -disable NAME | --disable NAME
76          -disable=NAME | --disable=NAME
77              Here "NAME" specifies a list of packages that we don't
78              want to use.  If this violates package dependencies,
79              genamke will exit with an error message.
80    
81        -enable NAME | --enable NAME
82          -enable=NAME | --enable=NAME
83              Here "NAME" specifies a list of packages that we wish
84              to specifically enable.  If this violates package
85              dependencies, genamke will exit with an error message.
86    
87        -standarddirs NAME | --standarddirs NAME
88          -standarddirs=NAME | --standarddirs=NAME
89              Here, "NAME" specifies a list of directories to be
90              used as the "standard" code.
91    
92        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
93          -fc=NAME | --fc=NAME
94              Use "NAME" as the fortran compiler.  By default, genmake
95              will search for a working compiler by trying a list of
96              "usual suspects" such as g77, f77, etc.
97    
98        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
99              Use "NAME" as the C compiler.  By default, genmake
100              will search for a working compiler by trying a list of
101              "usual suspects" such as gcc, c89, cc, etc.
102    
103        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
104              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
105              *only* works if CPP_EEOPTIONS.h allows this.
106    
107        -ignoretime | -ignore_time | --ignoretime | --ignore_time
108              Ignore all the "wall clock" routines entirely.  This will
109              not in any way hurt the model results -- it simply means
110              that the code that checks how long the model spends in
111              various routines will give junk values.
112    
113        -ts | --ts
114              Produce timing information per timestep
115        -papis | --papis
116              Produce summary MFlop/s (and IPC) with PAPI per timestep
117        -pcls | --pcls
118              Produce summary MFlop/s etc. with PCL per timestep
119        -foolad | --foolad
120              Fool the AD code generator
121        -papi | --papi
122              Performance analysis with PAPI
123        -pcl | --pcl
124              Performance analysis with PCL
125        -hpmt | --hpmt
126              Performance analysis with the HPM Toolkit
127    
128        -ieee | --ieee
129              use IEEE numerics.  Note that this option *only* works
130              if it is supported by the OPTFILE that is being used.
131        -devel | --devel
132              Add additional warning and debugging flags for development
133              (if supported by the OPTFILE); also switch to IEEE numerics.
134        -gsl | --gsl
135              Use GSL to control floating point rounding and precision
136    
137        -mpi | --mpi
138              Include MPI header files and link to MPI libraries
139        -mpi=PATH | --mpi=PATH
140              Include MPI header files and link to MPI libraries using MPI_ROOT
141              set to PATH. i.e. Include files from \$PATH/include, link to libraries
142              from \$PATH/lib and use binaries from \$PATH/bin.
143    
144        -omp | --omp
145              Activate OpenMP code + use Compiler option OMPFLAG
146        -omp=OMPFLAG | --omp=OMPFLAG
147              Activate OpenMP code + use Compiler option OMPFLAG
148    
149        -es | --es | -embed-source | --embed-source
150              Embed a tarball containing the full source code
151              (including the Makefile, etc.) used to build the
152              executable [off by default]
153    
154        -ds | --ds
155              Report genmake internal variables status (DUMPSTATE)
156              to file "genmake_state" (for debug purpose)
157    
158      While it is most often a single word, the "NAME" variables specified
159      above can in many cases be a space-delimited string such as:
160    
161        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
162        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
163        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
164    
165      which, depending upon your shell, may need to be single-quoted.
166    
167      For more detailed genmake documentation, please see:
168    
169        http://mitgcm.org/public/devel_HOWTO/
170    
171    EOF
172    
173        exit 1
174    }
175    
176  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
177  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
178  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
179      cpp_options=$1      cpp_options=$1
180      pkg=$2      pkg=$2
181      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
182      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
183      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
184      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"  
185  }  }
186    
187  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
188  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
189  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
190      cpp_options=$1      cpp_options=$1
191      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
192      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"  
193  }  }
194    
195  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 42  test_for_mpi_in_cpp_eeoptions() { Line 197  test_for_mpi_in_cpp_eeoptions() {
197  test_for_string_in_file() {  test_for_string_in_file() {
198      file=$1      file=$1
199      strng=$2      strng=$2
200      grep -i "$strng" $file > /dev/null 2>&1      grep "$strng" $file > /dev/null 2>&1
201      RETVAL=$?      RETVAL=$?
202      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
203          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
204          grep -i "$strng" $file          grep -i "$strng" $file
205          exit 99          exit 99
206      fi      fi
207      return 0      return 0
# Line 56  test_for_string_in_file() { Line 211  test_for_string_in_file() {
211  # the package list.  # the package list.
212  expand_pkg_groups() {  expand_pkg_groups() {
213      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
214      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
215          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > $TMP.p1
216          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat $TMP.p1 | $AWK '(NF>2 && $2==":"){ print $0 }' > $TMP.p2
217          matched=0          matched=0
218          for i in $PACKAGES ; do          for i in $PACKAGES ; do
219              line=`grep "^ *$i" ./p2.tmp`              line=`grep "^ *$i" $TMP.p2`
220              RETVAL=$?              RETVAL=$?
221              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
222                  matched=1                  matched=1
223                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
224                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
225                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
226              else              else
227                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
228              fi              fi
229          done          done
230          PACKAGES=$new_packages          PACKAGES=$new_packages
231          rm -f ./p[1,2].tmp          rm -f $TMP.p[1,2]
232          return $matched          return $matched
233      else      else
234          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
# Line 110  EOF Line 264  EOF
264              check_for_broken_Ff              check_for_broken_Ff
265          else          else
266              cat <<EOF 2>&1              cat <<EOF 2>&1
267  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
268    (fails the "cp" test) and this program cannot find a suitable    (fails the "cp" test) and this program cannot find a suitable
269    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
270    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
271    
272  EOF  EOF
# Line 137  EOF Line 291  EOF
291  .F.$tfs:  .F.$tfs:
292          $LN \$< \$@          $LN \$< \$@
293  EOF  EOF
294      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
295      RETVAL=$?      RETVAL=$?
296      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
297          if test "x$FS" = x ; then          if test "x$FS" = x ; then
# Line 145  EOF Line 299  EOF
299              FS90='fr9'              FS90='fr9'
300              check_for_broken_Ff              check_for_broken_Ff
301          else          else
302              cat <<EOF 2>&1              echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
303  ERROR: Your file system cannot distinguish between *.F and *.f files              echo "       see simple makefile: '$MAKEFILE' (left here)"
304    (fails the "make/ln" test) and this program cannot find a suitable              echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
305    replacement extension.  Please try a different build environment or              echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
306    contact the <MITgcm-support@mitgcm.org> list for help.              echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
307                echo ""
 EOF  
308              exit -1              exit -1
309              return              return
310          fi          fi
# Line 165  EOF Line 318  EOF
318      return      return
319  }  }
320    
   
321  look_for_makedepend()  {  look_for_makedepend()  {
322    
323      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
# Line 176  look_for_makedepend()  { Line 328  look_for_makedepend()  {
328      #      #
329      #    1) a makedepend implementation shipped with the cyrus-imapd      #    1) a makedepend implementation shipped with the cyrus-imapd
330      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
331      #      #    2) a local tools/xmakedepend shell script
     #    2) a known-buggy xmakedpend shell script  
332      #      #
333      #  So the choices are, in order:      #  So the choices are, in order:
     #  
334      #    1) use the user-specified program      #    1) use the user-specified program
335      #    2) use a system-wide default      #    2) use the local xmakedepend script (get all dependencies, but slower)
336      #    3) locally build and use the cyrus implementation      #    3) use a system-wide default
337      #    4) fall back to the buggy local xmakedpend script      #    4) locally build and use the cyrus makedepend
338        #             (faster, but can miss some dependencies)
339      #      #
340        echo >> $LOGFILE
341        echo "running: look_for_makedepend()" >> $LOGFILE
342        if test "x${MAKEDEPEND}" != x ; then
343            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
344            RETVAL=$?
345            if test x"$RETVAL" = x0 ; then
346                build_cyrus_makedepend
347                RETVAL=$?
348                if test "x$RETVAL" != x0 ; then
349                    echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
350                    MAKEDEPEND=
351                fi
352            else
353                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
354                RETVAL=$?
355                if test "x$RETVAL" = x0 ; then
356                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
357                fi
358                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
359            fi
360        fi
361      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
         which makedepend > /dev/null 2>&1  
         RV0=$?  
362          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
363          #  echo 'MAKEFILE="'$MAKEFILE'"'          #  echo 'MAKEFILE="'$MAKEFILE'"'
364          cat <<EOF >> $MAKEFILE          cat <<EOF >> $MAKEFILE
365  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
366  #  #
367  #   Some "makedepend" implementations will die if they cannot  #   Some "makedepend" implementations will die if they cannot
368  #   find a Makefile -- so this file is here to gives them an  #   find a Makefile -- so this file is here to gives them an
369  #   empty one to find and parse.  #   empty one to find and parse.
370  EOF  EOF
371          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
# Line 204  EOF Line 374  EOF
374        stop        stop
375        end        end
376  EOF  EOF
377          makedepend genmake_tc.f > /dev/null 2>&1          $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
378          RV1=$?          RV1=$?
379            which makedepend > /dev/null 2>&1
380            RV2=$?
381            if test "x${RV2}" = x0 ; then
382                makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
383                RV3=$? ; loc_msg='not working.'
384            else RV3=$RV2 ; loc_msg='not found.'
385            fi
386          test -f $MAKEFILE  &&  rm -f $MAKEFILE          test -f $MAKEFILE  &&  rm -f $MAKEFILE
387          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
388          if test "x${RV0}${RV1}" = x00 ; then          echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
389            if test "x${RV1}" = x0 ; then
390                MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
391                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392            elif test "x${RV3}" = x0 ; then
393                echo "    local tools/xmakedepend not working. Use system-default makedepend"
394              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
395                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
396          else          else
397              echo "    a system-default makedepend was not found."              echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
398                            echo -n "    Try to build cyrus-makedepend ..."
399              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
400              build_cyrus_makedepend              build_cyrus_makedepend
401              RETVAL=$?              RETVAL=$?
402              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" = x0 ; then
403                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'                  echo "  Works"
404                else
405                    echo "  Fails" ; echo "" >> $LOGFILE
406                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
407                    echo ""
408                    exit -1
409                    return
410              fi              fi
             rm -f ./genmake_cy_md  
         fi  
     else  
         #  echo "MAKEDEPEND=${MAKEDEPEND}"  
         echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1  
         RETVAL=$?  
         if test x"$RETVAL" = x0 ; then  
             build_cyrus_makedepend  
411          fi          fi
412      fi      fi
413  }  }
414    
   
415  build_cyrus_makedepend()  {  build_cyrus_makedepend()  {
416        echo >> $LOGFILE
417        echo "running: build_cyrus_makedepend()" >> $LOGFILE
418      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
419      (      (
420          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
421              &&  ./configure > /dev/null 2>&1  \              &&  ./configure > /dev/null 2>&1  \
422              &&  make > /dev/null 2>&1              &&  $MAKE > /dev/null 2>&1
423          if test -x ./makedepend.exe ; then          if test -x ./makedepend.exe ; then
424              $LN ./makedepend.exe ./makedepend              $LN ./makedepend.exe ./makedepend
425          fi          fi
# Line 249  build_cyrus_makedepend()  { Line 431  build_cyrus_makedepend()  {
431      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
432      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
433          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
434            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
435          return 0          return 0
436      else      else
437          echo "WARNING: unable to build cyrus-imapd-makedepend"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
438          return 1          return 1
439      fi      fi
440  }  }
441    
   
442  build_embed_encode()  build_embed_encode()
443  {  {
444      printf "  building the embed-encode utility...  "      printf "  building the embed-encode utility...  "
445      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
446          if test ! -d "$ROOTDIR/tools/embed_encode" ; then          if test ! -d "$ROOTDIR/tools/embed_encode" ; then
447              echo              echo
448              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
449              echo              echo
450              EMBED_SRC=f              EMBED_SRC=f
451              return 1              return 1
452          fi          fi
453          clist="cc gcc c89 $CC"          clist="cc gcc c89 $CC"
454          for ic in $clist ; do          for ic in $clist ; do
455              comm="$ic -o encode_files encode_files.c"              comm="$ic -o encode_files encode_files.c"
456              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
457              RETVAL=$?              RETVAL=$?
458              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
459                  echo "OK"                  echo "OK"
                 DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
460                  return 0                  return 0
461              fi              fi
462          done          done
# Line 287  build_embed_encode() Line 468  build_embed_encode()
468          return 1          return 1
469      fi      fi
470      echo "OK"      echo "OK"
     DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
471  }  }
472    
473    #  look for possible C compilers
474  # Guess possible config options for this host  look_for_C_compilers() {
475  find_possible_configs()  {      echo >> $LOGFILE
476        echo "running: look_for_C_compilers()" >> $LOGFILE
477      tmp1=`uname`"_"`uname -m`      rm -f ./genmake_hello.c  ./genmake_hello
478      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat >> genmake_hello.c << EOF
     tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`  
     tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`  
     tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`  
     tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`  
     PLATFORM=$tmp3  
     echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32  
     OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`  
     echo "  The platform appears to be:  $PLATFORM"  
       
     echo "test" > test  
     ln -s ./test link  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         LN="ln -s"  
     else  
         echo "Error: \"ln -s\" does not appear to work on this system!"  
         echo "  For help, please contact <MITgcm-support@mitgcm.org>."  
         exit 1  
     fi  
     rm -f test link  
   
     if test "x$CPP" = x ; then  
         CPP="cpp -traditional -P"  
     fi  
   
     look_for_makedepend  
   
     #================================================================  
     #  look for possible C compilers  
     tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"  
     p_CC=  
     for c in $tmp ; do  
         rm -f ./genmake_hello.c  ./genmake_hello  
         cat >> genmake_hello.c << EOF  
479  #include <stdio.h>  #include <stdio.h>
480  int main(int argc, char **argv) {  int main(int argc, char **argv) {
481    printf("Hello!\n");    printf("Hello!\n");
482    return 0;    return 0;
483  }  }
484  EOF  EOF
485          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
486        p_CC=
487        for c in $tmp ; do
488            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
489            echo $COMM >> $LOGFILE
490            $COMM >> $LOGFILE 2>&1
491          RETVAL=$?          RETVAL=$?
492          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
493                echo " $c test successful" >> $LOGFILE
494              p_CC="$p_CC $c"              p_CC="$p_CC $c"
495          fi          fi
496      done      done
# Line 354  Error: No C compilers were found in your Line 506  Error: No C compilers were found in your
506  EOF  EOF
507          exit 1          exit 1
508      else      else
509          echo "  The possible C compilers found in your path are:"          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
         echo "   "$p_CC  
510          if test "x$CC" = x ; then          if test "x$CC" = x ; then
511              CC=`echo $p_CC | $AWK '{print $1}'`              CC=`echo $p_CC | $AWK '{print $1}'`
512              echo "  Setting C compiler to: "$CC              echo "  Setting C compiler to: "$CC
513          fi          fi
514      fi      fi
515        echo " --> set CC='$CC'" >> $LOGFILE
516    }
517    
518    # Guess possible config options for this host
519    find_possible_optfile()  {
520    
521        echo >> $LOGFILE
522        echo "running: find_possible_optfile()" >> $LOGFILE
523        tmp1=`uname`"_"`uname -m`
524        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
525        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
526        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
527        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
528        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
529        PLATFORM=$tmp3
530        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
531        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
532        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
533    
534      #================================================================      #================================================================
535      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
536      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"      echo "  look for possible FORTRAN compilers" >> $LOGFILE
537        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
538      p_FC=      p_FC=
539      for c in $tmp ; do      rm -f ./genmake_hello.f
540          rm -f ./hello.f ./hello      cat >> genmake_hello.f <<EOF
         cat >> hello.f <<EOF  
541        program hello        program hello
542        do i=1,3        do i=1,3
543          print *, 'hello world : ', i          print *, 'hello world : ', i
544        enddo        enddo
545        end        end
546  EOF  EOF
547          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
548            COMM="$f -o genmake_hello genmake_hello.f"
549            echo $COMM >> $LOGFILE
550            $COMM >> $LOGFILE 2>&1
551          RETVAL=$?          RETVAL=$?
552          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
553              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
554                p_FC="$p_FC $f"
555          fi          fi
556      done      done
557      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
558      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
559          cat 1>&2 <<EOF          cat 1>&2 <<EOF
560    
# Line 394  Error: No Fortran compilers were found i Line 567  Error: No Fortran compilers were found i
567  EOF  EOF
568          exit 1          exit 1
569      else      else
570          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
571      fi      fi
572    
573      #  Use the first of the compilers found in the current PATH      #  Use the first of the compilers found in the current PATH
# Line 404  EOF Line 576  EOF
576          for i in $p_FC ; do          for i in $p_FC ; do
577              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
578              if test -r $OPTFILE ; then              if test -r $OPTFILE ; then
579                  echo "  Setting OPTFILE to: "$OPTFILE                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
580                  break                  break
581              fi              fi
582          done          done
# Line 413  EOF Line 585  EOF
585      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
586          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
587          if test ! -r $OPTFILE ; then          if test ! -r $OPTFILE ; then
588               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
589          fi          fi
590      fi      fi
591  #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #   for i in $p_FC ; do  
 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
 #if test -r $p_OF ; then  
 #    OPTFILE=$p_OF  
 #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #    break  
 #fi  
 #   done  
592      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
593          cat 1>&2 <<EOF          cat 1>&2 <<EOF
594    
# Line 442  Error: No options file was found in:  $R Line 604  Error: No options file was found in:  $R
604  EOF  EOF
605          exit 1          exit 1
606      fi      fi
607        }
608  #     # look for possible MPI libraries  
609  #     mpi_libs=  #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
610  #     mpi_fort=`which mpif77 2>/dev/null`  #  checking for additional included headers (in case of chain of included header)
611  #     RETVAL=$?  mpi_headers_do_local_copy() {
612  #     if test "x${RETVAL}" = x0 ; then  
613  #       cat >>test.f <<EOF      dBug=0
614  #       PROGRAM HELLO      rm -rf ./mpi_headers
615  #       DO 10, I=1,10      if test -d $MPIINCLUDEDIR ; then
616  #       PRINT *,'Hello World'  
617  #    10 CONTINUE          #----- check for additional headers (chain of included headers)
618  #       STOP          echo -n '  Check MPI headers ... '
619  #       END          listIni=$MPI_HEADER_FILES
620  # EOF          echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
621  #       eval "$mpi_fort -showme test.f > out"          outp=$?
622  #       RETVAL=$?          #- always check mpif.h (the only mpi-header included in standard MITgcm code)
623  #       if test "x${RETVAL}" = x0 ; then          if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
624  #           a=`cat out`          if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
625  #           for i in $a ; do  
626  #               case $i in          doCheck=1 ; list2copy='' ; list2check=$listIni
627  #                   -*)          while test $doCheck = 1 ; do
628  #                       mpi_libs="$mpi_libs $i" ;;            newList=''
629  #               esac            for i in $list2check ; do
630  #           done              if test -f $MPIINCLUDEDIR/$i ; then
631  #           echo "The MPI libs appear to be:"                newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
632  #           echo "  "$mpi_libs                  sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
633  #       fi                if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
634  #       rm -f test.f out                for j in $newInc ; do
635  #     fi                  echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
636                    outp=$?
637                    if test $outp != 0 ; then
638                      if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
639                      newList="$newList $j"
640                    fi
641                  done
642                  if test $dBug = 1 ; then echo "" ; fi
643                fi
644              done
645              if test "x$newList" = x ; then doCheck=0
646              else list2check=$newList ; list2copy="$list2copy $newList"
647              fi
648            done
649            list2copy="$MPI_HEADER_FILES $list2copy"
650            if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
651    
652            #----- create local mpi_headers dir if we have files to copy
653            mkListInc=`echo $list2copy | wc -w`
654            if test $mkListInc != 0 ; then
655              echo 'create local "./mpi_headers" dir'
656              mkdir -p ./mpi_headers
657              INCLUDES="-I./mpi_headers $INCLUDES"
658              mkListInc=1
659            fi
660            if test "x$LOCAL_MPI_HEADERS" != x ; then mkListInc=0 ; fi
661    
662            #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
663            for i in $list2copy ; do
664              if test -f $MPIINCLUDEDIR/$i ; then
665                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
666                if test $i = 'mpif.h' ; then
667                    perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
668                fi
669                if test $mkListInc = 2 ; then
670                    LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
671                fi
672                if test $mkListInc = 1 ; then
673                    LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=2
674                fi
675              fi
676            done
677        else
678            echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a directory"
679            echo "WARNING: => skip checking for MPI headers (no ./mpi_headers dir)"
680    #       exit -1
681        fi
682  }  }
683    
684  #  Parse the package dependency information  #  Parse the package dependency information
# Line 480  get_pdepend_list()  { Line 687  get_pdepend_list()  {
687      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
688      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
689      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
690          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
691          > ./.pd_tmp          > ./.pd_tmp
692      . ./.pd_tmp      RETVAL=$?
693      rm -f ./.pd_tmp      if test ! "x${RETVAL}" = x0 ; then
694          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
695      printf "PNAME = "${}        exit 1
696  }      fi
697        . ./.pd_tmp
698        rm -f ./.pd_tmp
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME  
       -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME  
           Use "NAME" as the adoptfile.  By default, the file at  
           "tools/adjoint_options/adjoint_default" will be used.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -bash NAME  
           Explicitly specify the Bourne or BASH shell to use  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -cc NAME | --cc NAME | -cc=NAME | --cc=NAME  
           Use "NAME" as the C compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as gcc, c89, cc, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4  
           Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)  
           *only* works if CPP_EEOPTIONS.h allows this.  
   
     -ignoretime | -ignore_time | --ignoretime | --ignore_time  
           Ignore all the "wall clock" routines entirely.  This will  
           not in any way hurt the model results -- it simply means  
           that the code that checks how long the model spends in  
           various routines will give junk values.  
   
     -ts | --ts  
           Produce timing information per timestep  
     -papis | --papis  
           Produce summary MFlop/s (and IPC) with PAPI per timestep  
     -pcls | --pcls  
           Produce summary MFlop/s etc. with PCL per timestep  
     -foolad | --foolad  
           Fool the AD code generator  
     -papi | --papi  
           Performance analysis with PAPI  
     -pcl | --pcl  
           Performance analysis with PCL  
     -hpmt | --hpmt  
           Performance analysis with the HPM Toolkit  
   
     -gsl | --gsl  
           Use GSL to control floating point rounding and precision  
     -devel | --devel  
           Add additional warning and debugging flags for development  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from \$PATH/include, link to libraries  
           from \$PATH/lib and use binaries from \$PATH/bin.  
   
     -omp | --omp  
           Activate OpenMP code + use Compiler option OMPFLAG  
     -omp=OMPFLAG | --omp=OMPFLAG  
           Activate OpenMP code + use Compiler option OMPFLAG  
   
     -es | --es | -embed-source | --embed-source  
           Embed a tarball containing the full source code  
           (including the Makefile, etc.) used to build the  
           executable [off by default]  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/public/devel_HOWTO/  
   
 EOF  
   
     exit 1  
699  }  }
700    
701  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
# Line 651  get_fortran_c_namemangling()  { Line 703  get_fortran_c_namemangling()  {
703    
704      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
705      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
706          return 0          return 0
707      fi      fi
708        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
709    
710      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
711        
712      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
713  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
714  EOF  EOF
715      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
716        echo ' '$COMM >> $LOGFILE
717        $COMM >> $LOGFILE 2>&1
718      RETVAL=$?      RETVAL=$?
719      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
720          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
721          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
722    
723  WARNING: C test compile fails   WARNING: C test compile fails
724  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
725  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
726  EOF  EOF
727          return 1          return 1
728      fi      fi
# Line 675  EOF Line 730  EOF
730      RETVAL=$?      RETVAL=$?
731      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
732          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
733          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
734    
735  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
736  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
737  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
738  EOF  EOF
739          return 1          return 1
740      fi      fi
# Line 689  EOF Line 744  EOF
744        call tsub( string )        call tsub( string )
745        end        end
746  EOF  EOF
747      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
748        echo ' '$COMM >> $LOGFILE
749        $COMM >> $LOGFILE 2>&1
750      RETVAL=$?      RETVAL=$?
751      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
752          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
753          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
754    
755  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
756  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
757  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
758  EOF  EOF
759          return 1          return 1
760      fi      fi
# Line 705  EOF Line 762  EOF
762      RETVAL=$?      RETVAL=$?
763      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
764          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
765          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
766    
767  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
768  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
769  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
770  EOF  EOF
771          return 1          return 1
772      fi      fi
# Line 735  EOF Line 792  EOF
792    
793      #  cleanup the testing files      #  cleanup the testing files
794      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
795    
796        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
797    }
798    
799  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
800        echo >> $LOGFILE
801        echo "running: check_HAVE_CLOC()" >> $LOGFILE
802      get_fortran_c_namemangling      get_fortran_c_namemangling
803      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
804  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 756  void FC_NAMEMANGLE(cloc) ( double *curti Line 816  void FC_NAMEMANGLE(cloc) ( double *curti
816  }  }
817  EOF  EOF
818      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
819      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
820      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
821      RET_C=$?      RET_C=$?
822      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
823        program hello        program hello
# Line 768  EOF Line 828  EOF
828        end        end
829  EOF  EOF
830      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
831      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
832      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
833      RET_F=$?      RET_F=$?
834      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
835      RETVAL=$?      RETVAL=$?
836      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
837          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
838      fi      fi
839      rm -f genmake_tc*      rm -f genmake_tc*
840        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
841  }  }
842    
   
843  check_HAVE_SIGREG()  {  check_HAVE_SIGREG()  {
844      if test ! "x$HAVE_SIGREG" = x ; then      if test ! "x$HAVE_SIGREG" = x ; then
845          return          return
846      fi      fi
847        echo >> $LOGFILE
848        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
849      get_fortran_c_namemangling      get_fortran_c_namemangling
850      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
851  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 817  void FC_NAMEMANGLE(sigreg) (int * aip) Line 878  void FC_NAMEMANGLE(sigreg) (int * aip)
878  }  }
879  EOF  EOF
880      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
881      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
882      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
883      RET_C=$?      RET_C=$?
884      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
885        program hello        program hello
# Line 828  EOF Line 889  EOF
889        call sigreg(anint)        call sigreg(anint)
890        end        end
891  EOF  EOF
892      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SIGREG()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
893      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
894      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
895      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
896      RETVAL=$?      RETVAL=$?
897      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
898          HAVE_SIGREG=t          HAVE_SIGREG=t
         DEFINES="$DEFINES -DHAVE_SIGREG"  
899      fi      fi
900      rm -f genmake_tc*      rm -f genmake_tc*
901        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
902  }  }
903    
   
904  check_HAVE_SETRLSTK()  {  check_HAVE_SETRLSTK()  {
     if test "x$HAVE_SETRLSTK" = xt ; then  
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
         return  
     fi    
905      if test ! "x$HAVE_SETRLSTK" = x ; then      if test ! "x$HAVE_SETRLSTK" = x ; then
906          return          return
907      fi      fi
908        echo >> $LOGFILE
909        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
910      get_fortran_c_namemangling      get_fortran_c_namemangling
911      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
912  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 867  void FC_NAMEMANGLE(setrlstk) () Line 923  void FC_NAMEMANGLE(setrlstk) ()
923  }  }
924  EOF  EOF
925      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
926      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
927      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
928      RET_C=$?      RET_C=$?
929      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
930        program hello        program hello
# Line 876  EOF Line 932  EOF
932        call setrlstk()        call setrlstk()
933        end        end
934  EOF  EOF
935      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
936      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
937      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
938      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
939      RETVAL=$?      RETVAL=$?
940      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
941          HAVE_SETRLSTK=t          HAVE_SETRLSTK=t
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
942      fi      fi
943      rm -f genmake_tc*      rm -f genmake_tc*
944        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
945  }  }
946    
   
947  check_HAVE_STAT()  {  check_HAVE_STAT()  {
948        echo >> $LOGFILE
949        echo "running: check_HAVE_STAT()" >> $LOGFILE
950      get_fortran_c_namemangling      get_fortran_c_namemangling
951      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
952  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 913  void FC_NAMEMANGLE(tfsize) ( int *nbyte Line 968  void FC_NAMEMANGLE(tfsize) ( int *nbyte
968  }  }
969  EOF  EOF
970      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
971      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
972      $COMM >> genmake_tc.log 2>&1      $COMM >> genmake_tc.log 2>&1
973      RET_C=$?      RET_C=$?
974      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
# Line 923  EOF Line 978  EOF
978        print *," HELLO WORLD", nbyte        print *," HELLO WORLD", nbyte
979        end        end
980  EOF  EOF
981      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_STAT()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
982      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
983      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
984      $COMM >> genmake_tc.log 2>&1      $COMM >> genmake_tc.log 2>&1
985      RETVAL=$?      RETVAL=$?
986      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
987          HAVE_STAT=t          HAVE_STAT=t
         DEFINES="$DEFINES -DHAVE_STAT"  
988      fi      fi
989      rm -f genmake_tc*      rm -f genmake_tc*
990        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
991  }  }
992    
   
993  check_netcdf_libs()  {  check_netcdf_libs()  {
994      if test ! "x$SKIP_NETCDF_CHECK" = x ; then      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
995          return          return
996      fi      fi
997      echo >> genmake_warnings      echo >> $LOGFILE
998      echo "running: check_netcdf_libs()" >> genmake_warnings      echo "running: check_netcdf_libs()" >> $LOGFILE
999      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
1000        program fgennc        program fgennc
1001  #include "netcdf.inc"  #include "netcdf.inc"
1002  EOF  EOF
1003      if test ! "x$MPI" = x ; then     #if test ! "x$MPI" = x ; then
1004          echo '#include "mpif.h"' >> genmake_tnc.F     #    echo '#include "mpif.h"' >> genmake_tnc.F
1005      fi     #fi
1006      cat <<EOF >> genmake_tnc.F      cat <<EOF >> genmake_tnc.F
1007        integer iret, ncid, xid        integer iret, ncid, xid
1008        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
# Line 961  EOF Line 1013  EOF
1013        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1014        end        end
1015  EOF  EOF
1016      echo "===  genmake_tnc.F  ===" > genmake_tnc.log      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
1017      cat genmake_tnc.F >> genmake_tnc.log      cat genmake_tnc.F >> genmake_tnc.log
1018      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log      echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
1019      RET_CPP=f      RET_CPP=f
1020      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
1021      echo "$COMM" >> genmake_tnc.log      echo "$COMM" >> genmake_tnc.log
# Line 979  EOF Line 1031  EOF
1031      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1032          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
1033      RET_COMPILE=$?      RET_COMPILE=$?
1034      cat genmake_tnc.log >> genmake_warnings      cat genmake_tnc.log >> $LOGFILE
1035    
1036      #EH3  Remove test program execution for machines that either disallow      #EH3  Remove test program execution for machines that either disallow
1037      #EH3  execution or cannot support it (eg. cross-compilers)      #EH3  execution or cannot support it (eg. cross-compilers)
# Line 990  EOF Line 1042  EOF
1042    
1043      if test "x$RET_COMPILE" = x0 ; then      if test "x$RET_COMPILE" = x0 ; then
1044          HAVE_NETCDF=t          HAVE_NETCDF=t
1045            echo "check_netcdf: successful" >> $LOGFILE
1046      else      else
1047          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
1048          echo "try again with added '-lnetcdf'" > genmake_tnc.log          echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1049          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1050          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1051          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
# Line 1000  EOF Line 1053  EOF
1053              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1054              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1055          RET_COMPILE=$?          RET_COMPILE=$?
1056          cat genmake_tnc.log >> genmake_warnings          echo >> $LOGFILE
1057            cat genmake_tnc.log >> $LOGFILE
1058          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
1059              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
1060              HAVE_NETCDF=t              HAVE_NETCDF=t
1061                echo "check_netcdf: successful" >> $LOGFILE
1062          else          else
1063          # try again with "-lnetcdff" added to the libs          # try again with "-lnetcdff" added to the libs
1064              echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log              echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1065              echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log              echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1066              echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log              echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1067              echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log              echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
# Line 1014  EOF Line 1069  EOF
1069                  &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \                  &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1070                  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1                  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1071              RET_COMPILE=$?              RET_COMPILE=$?
1072              cat genmake_tnc.log >> genmake_warnings              echo >> $LOGFILE
1073                cat genmake_tnc.log >> $LOGFILE
1074              if test "x$RET_COMPILE" = x0 ; then              if test "x$RET_COMPILE" = x0 ; then
1075                  LIBS="$LIBS -lnetcdff -lnetcdf"                  LIBS="$LIBS -lnetcdff -lnetcdf"
1076                  HAVE_NETCDF=t                  HAVE_NETCDF=t
1077                    echo "check_netcdf: successful" >> $LOGFILE
1078              fi              fi
1079          fi          fi
1080      fi      fi
1081      rm -f genmake_tnc*      rm -f genmake_tnc*
1082        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1083    }
1084    
1085    check_lapack_libs()  {
1086        if test "x$CHECK_FOR_LAPACK" = xf ; then return ; fi
1087        echo >> $LOGFILE
1088        echo "running: check_lapack_libs()" >> $LOGFILE
1089        cat <<EOF > genmake_tla.F
1090          program fgenla
1091          integer info
1092          integer ipiv( 2 )
1093          double precision ab( 4, 2 ), b( 2 )
1094          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1095          data b / 1., 1. /
1096          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1097          IF (info .NE. 0) write(*,*) 'Error:', info
1098          write(*,*) b
1099          end
1100    EOF
1101        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1102        cat genmake_tla.F >> genmake_tla.log
1103        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1104        RET_CPP=f
1105        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1106        echo "$COMM" >> genmake_tla.log
1107        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1108        if test "x$RET_CPP" = xf ; then
1109            echo "  WARNING: CPP failed to pre-process the lapack test." \
1110                >> genmake_tla.log
1111            echo "    Please check that \$INCLUDES is properly set." \
1112                >> genmake_tla.log
1113        fi
1114        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1115        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1116        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1117            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1118        RET_COMPILE=$?
1119        cat genmake_tla.log >> $LOGFILE
1120    
1121        # test program execution not always possible (see check_netcdf_libs)
1122        #
1123        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1124        #RETVAL=$?
1125        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1126    
1127        if test "x$RET_COMPILE" = x0 ; then
1128            HAVE_LAPACK=t
1129            echo "check_lapack: successful" >> $LOGFILE
1130        else
1131            # try again with "-llapack" added to the libs
1132            echo "==> try again with added '-llapack'" > genmake_tla.log
1133            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1134            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1135            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1136            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1137                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1138                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1139            RET_COMPILE=$?
1140            echo >> $LOGFILE
1141            cat genmake_tla.log >> $LOGFILE
1142            if test "x$RET_COMPILE" = x0 ; then
1143                LIBS="$LIBS -llapack"
1144                HAVE_LAPACK=t
1145                echo "check_lapack: successful" >> $LOGFILE
1146            else
1147            # try again with "-lf77blas -lcblas" added to the libs
1148                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1149                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1150                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1151                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1152                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1153                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1154                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1155                RET_COMPILE=$?
1156                echo >> $LOGFILE
1157                cat genmake_tla.log >> $LOGFILE
1158                if test "x$RET_COMPILE" = x0 ; then
1159                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1160                    HAVE_LAPACK=t
1161                    echo "check_lapack: successful" >> $LOGFILE
1162                else
1163                # try again with "-latlas" added to the libs
1164                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1165                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1166                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1167                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1168                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1169                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1170                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1171                    RET_COMPILE=$?
1172                    echo >> $LOGFILE
1173                    cat genmake_tla.log >> $LOGFILE
1174                    if test "x$RET_COMPILE" = x0 ; then
1175                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1176                        HAVE_LAPACK=t
1177                        echo "check_lapack: successful" >> $LOGFILE
1178                    fi
1179                fi
1180            fi
1181        fi
1182        rm -f genmake_tla*
1183        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1184  }  }
1185    
1186    check_HAVE_FLUSH()  {
1187        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1188            return
1189        fi
1190        echo >> $LOGFILE
1191        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1192        cat <<EOF > genmake_tflsh.$FS
1193          program fgenflsh
1194          integer iounit
1195          character*9 fname
1196          iounit = 26
1197          fname = 'tmp.tflsh'
1198          open(iounit,FILE=fname,STATUS='unknown')
1199          write(iounit,*) 'genmake_tflsh: hello'
1200          call flush(iounit)
1201          close(iounit)
1202          end
1203    EOF
1204        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1205        cat genmake_tflsh.$FS >> genmake_tflsh.log
1206        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1207    
1208        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1209        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1210        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1211            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1212        RET_COMPILE=$?
1213    
1214        if test "x$RET_COMPILE" = x0 ; then
1215            HAVE_FLUSH=t
1216            #cat genmake_tflsh.log >> $LOGFILE
1217            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1218        else
1219            HAVE_FLUSH=f
1220            cat genmake_tflsh.log >> $LOGFILE
1221        fi
1222        rm -f genmake_tflsh*
1223        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1224    }
1225    
1226  ###############################################################################  ###############################################################################
1227  #   Sequential part of script starts here  #   Sequential part of script starts here
# Line 1047  ENABLE= Line 1244  ENABLE=
1244  DISABLE=  DISABLE=
1245  # MAKEFILE=  # MAKEFILE=
1246  # MAKEDEPEND=  # MAKEDEPEND=
1247  PDEPEND=  PKG_DEPEND=
1248  DUMPSTATE=t  PKG_GROUPS=
1249  PDEFAULT=  DUMPSTATE=f
1250  OPTFILE=  OPTFILE=
1251  INCLUDES="-I. $INCLUDES"  INCLUDES="-I. $INCLUDES"
1252  FFLAGS=  FFLAGS=
# Line 1057  FOPTIM= Line 1254  FOPTIM=
1254  FEXTRAFLAGS=  FEXTRAFLAGS=
1255  USE_EXTENDED_SRC=  USE_EXTENDED_SRC=
1256  EXTENDED_SRC_FLAG=  EXTENDED_SRC_FLAG=
1257    GET_FC_VERSION=
1258  CFLAGS=  CFLAGS=
1259  KFLAGS1=  KFLAGS1=
1260  KFLAGS2=  KFLAGS2=
# Line 1081  GSL= Line 1279  GSL=
1279  DEVEL=  DEVEL=
1280  HAVE_TEST_L=  HAVE_TEST_L=
1281    
1282    # set this to "t" to enable lapack test
1283    CHECK_FOR_LAPACK=f
1284    
1285  # DEFINES checked by test compilation or command-line  # DEFINES checked by test compilation or command-line
1286  HAVE_SYSTEM=  HAVE_SYSTEM=
1287  HAVE_FDATE=  HAVE_FDATE=
# Line 1091  HAVE_STAT= Line 1292  HAVE_STAT=
1292  HAVE_NETCDF=  HAVE_NETCDF=
1293  HAVE_ETIME=  HAVE_ETIME=
1294  IGNORE_TIME=  IGNORE_TIME=
1295    HAVE_LAPACK=
1296    HAVE_FLUSH=
1297    
1298  MODS=  MODS=
1299  TOOLSDIR=  TOOLSDIR=
# Line 1098  SOURCEDIRS= Line 1301  SOURCEDIRS=
1301  INCLUDEDIRS=  INCLUDEDIRS=
1302  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1303    
1304    #- local config file
1305    gm_local="genmake_local"
1306    
1307  G2ARGS=  G2ARGS=
1308  BASH=  BASH=
1309  PWD=`pwd`  PWD=`pwd`
# Line 1113  MACHINE=`uname -a` Line 1319  MACHINE=`uname -a`
1319  EXECUTABLE=  EXECUTABLE=
1320  EXEHOOK=  EXEHOOK=
1321  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1322  IEEE=  IEEE=
1323  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1324      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
# Line 1122  FS= Line 1327  FS=
1327  FS90=  FS90=
1328    
1329  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1330    OPENAD=
1331  AD_OPTFILE=  AD_OPTFILE=
1332  TAF=  TAF=
1333  AD_TAF_FLAGS=  AD_TAF_FLAGS=
# Line 1134  FTL_TAF_FLAGS= Line 1340  FTL_TAF_FLAGS=
1340  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1341  TAMC_EXTRA=  TAMC_EXTRA=
1342    
1343    DIVA=
1344    MPIINCLUDEDIR=
1345    MPI_HEADER_FILES=
1346    LOCAL_MPI_HEADERS=
1347    
1348  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1349  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1350  gm_s2="FC IEEE USE_R4 TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1351    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1352    
1353  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1354  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1355  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1356  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1357  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="TMP THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1358  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1359    
1360  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1361  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE OPENAD TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1362  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1363  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1364    
1365  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1366  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1367    
1368  cat <<EOF  cat <<EOF
1369    
1370  GENMAKE :  GENMAKE :
1371    
1372  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1373  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1374    or for more detail see the Developer's HOWTO manual at:
1375    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1376    
1377  EOF  EOF
1378    
1379    LOGFILE="genmake.log"
1380    #- clean-up previous genmake logfiles:
1381    rm -f genmake_state genmake_*optfile $LOGFILE
1382    
1383  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 printf "  getting local config information:  "  
 if test -f $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1384    
1385  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1386  #parse_options  #parse_options
# Line 1190  for ac_option in "$@" ; do Line 1395  for ac_option in "$@" ; do
1395          ac_prev=          ac_prev=
1396          continue          continue
1397      fi      fi
1398        
1399      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1400        
1401      case $ac_option in      case $ac_option in
1402            
1403          -help | --help | -h | --h)          -help | --help | -h | --h)
1404              usage ;;              usage ;;
1405            
1406          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1407              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1408          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1409              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1410          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1411              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1412            
1413            -oad | --oad)
1414                OPENAD="true" ; ALWAYS_USE_F90=1 ;;
1415          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1416              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1417          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1418              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1419            
1420          -pdepend | --pdepend)          -pdepend | --pdepend)
1421              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1422          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1423              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1424            
1425          -pdefault | --pdefault)          -pgroups | --pgroups)
1426              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1427          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1428              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1429            
1430          -make | --make | -m | --m)          -make | --make | -m | --m)
1431              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1432          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1433              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1434            
1435          -bash | --bash)          -bash | --bash)
1436              ac_prev=BASH ;;              ac_prev=BASH ;;
1437          -bash=* | --bash=*)          -bash=* | --bash=*)
1438              BASH=$ac_optarg ;;              BASH=$ac_optarg ;;
1439            
1440          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1441              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1442          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
1443              MAKEDEPEND=$ac_optarg ;;              MAKEDEPEND=$ac_optarg ;;
1444            
1445          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -mf | --mf)
1446              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1447          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1448              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1449            
1450          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1451              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1452              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1453              echo              echo
1454              usage              usage
1455              ;;              ;;
1456            
1457          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1458              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1459          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1460              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1461            
1462          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1463              ac_prev=MODS ;;              ac_prev=MODS ;;
1464          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1465              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1466            
1467          -disable | --disable)          -disable | --disable)
1468              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1469          -disable=* | --disable=*)          -disable=* | --disable=*)
1470              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1471            
1472          -enable | --enable)          -enable | --enable)
1473              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1474          -enable=* | --enable=*)          -enable=* | --enable=*)
1475              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1476            
1477          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1478              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1479          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 1276  for ac_option in "$@" ; do Line 1483  for ac_option in "$@" ; do
1483  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1484  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1485  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1486            
1487          -cc | --cc)          -cc | --cc)
1488              ac_prev=CC ;;              ac_prev=CC ;;
1489          -cc=* | --cc=*)          -cc=* | --cc=*)
1490              CC=$ac_optarg ;;              CC=$ac_optarg ;;
1491            
1492          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1493              ac_prev=FC ;;              ac_prev=FC ;;
1494          -fc=* | --fc=*)          -fc=* | --fc=*)
1495              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1496            
1497          -fs | --fs)          -fs | --fs)
1498              ac_prev=FS ;;              ac_prev=FS ;;
1499          -fs=* | --fs=*)          -fs=* | --fs=*)
1500              FS=$ac_optarg ;;              FS=$ac_optarg ;;
1501            
1502          -fs90 | --fs90)          -fs90 | --fs90)
1503              ac_prev=FS90 ;;              ac_prev=FS90 ;;
1504          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1505              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
           
         -ieee | --ieee)  
             IEEE=true ;;  
         -noieee | --noieee)  
             IEEE= ;;  
1506    
1507          -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )          -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1508              USE_R4=true ;;              USE_R4=true ;;
1509    
1510            -ieee | --ieee)
1511                IEEE=true ;;
1512            -noieee | --noieee)
1513                echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1514            -devel | --devel)
1515                IEEE=true ; DEVEL=true ;;
1516            -gsl | --gsl)
1517                GSL=true ;;
1518    
1519          -ts | --ts)          -ts | --ts)
1520              TS=true ;;              TS=true ;;
1521          -papis | --papis)          -papis | --papis)
# Line 1320  for ac_option in "$@" ; do Line 1531  for ac_option in "$@" ; do
1531          -hpmt | --hpmt)          -hpmt | --hpmt)
1532              HPMT=true ;;              HPMT=true ;;
1533    
         -gsl | --gsl)  
             GSL=true ;;  
   
         -devel | --devel)  
             DEVEL=true ;;  
   
1534          -mpi | --mpi)          -mpi | --mpi)
1535              MPI=true ;;              MPI=true ;;
1536          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1537              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1538              MPI=true ;;              MPI=true ;;
1539            
1540          -omp | --omp)          -omp | --omp)
1541              OMP=true ;;              OMP=true ;;
1542          -omp=* | --omp=*)          -omp=* | --omp=*)
1543              OMPFLAG=$ac_optarg              OMPFLAG=$ac_optarg
1544              OMP=true ;;              OMP=true ;;
1545            
1546          -ds | --ds)          -ds | --ds)
1547              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1548            
1549            -extra_flag | --extra_flag)
1550                ac_prev=FEXTRAFLAGS ;;
1551            -extra_flag=* | --extra_flag=*)
1552                FEXTRAFLAGS=$ac_optarg ;;
1553    
1554          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1555              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1556          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 1350  for ac_option in "$@" ; do Line 1560  for ac_option in "$@" ; do
1560              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1561          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1562              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1563            
1564          -ignoretime | -ignore_time | --ignoretime | --ignore_time)          -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1565              IGNORE_TIME="-DIGNORE_TIME" ;;              IGNORE_TIME="-DIGNORE_TIME" ;;
1566    
# Line 1361  for ac_option in "$@" ; do Line 1571  for ac_option in "$@" ; do
1571              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1572              usage              usage
1573              ;;              ;;
1574            
1575          *)          *)
1576              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1577              usage              usage
1578              ;;              ;;
1579            
1580      esac      esac
1581        
1582  done  done
1583    
1584    #TMP=./genmk_$$
1585    #- try to put temporary files in system-local /tmp dir
1586    TMP=/tmp/genmk_$$
1587    touch $TMP ; retVal=$?
1588    if [ $retVal -eq 0 ] ; then
1589      if test ! -r $TMP ; then TMP=./genmk_$$ ; fi
1590    else
1591      TMP=./genmk_$$
1592    fi
1593    rm -f $TMP
1594    #echo "  temp files: $TMP.*"
1595    
1596    printf "  getting local config information:  "
1597    if test -f $gm_local ; then
1598        echo "using $gm_local"
1599        . $gm_local
1600    else
1601        echo "none found"
1602    fi
1603    
1604  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1605      echo      echo
1606      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1607      echo "  file.  This file format is no longer supported.  For directions on"      echo "  file.  This file format is no longer supported.  For directions on"
1608      echo "  how to setup and use the new \"genmake2\" script, please see:"      echo "  how to setup and use the new \"genmake2\" script, please see:"
1609      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1610      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1611      echo "WARNING: ignore \"./.genmakerc\" and continue."      echo "WARNING: ignore \"./.genmakerc\" and continue."
1612      echo      echo
1613  fi  fi
1614    
1615  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
# Line 1392  if test "x${ROOTDIR}" = x ; then Line 1621  if test "x${ROOTDIR}" = x ; then
1621          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1622              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1623                  ROOTDIR=$d                  ROOTDIR=$d
1624                  printf "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1625                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1626                  break                  break
1627              fi              fi
1628          done          done
# Line 1425  if test "x$MAKEFILE" = x ; then Line 1654  if test "x$MAKEFILE" = x ; then
1654      MAKEFILE="Makefile"      MAKEFILE="Makefile"
1655  fi  fi
1656    
1657  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:"
1658  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1659      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1660          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1661          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1662          find_possible_configs          find_possible_optfile
1663      else      else
1664          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1665      fi      fi
# Line 1445  if test "x$OPTFILE" != xNONE ; then Line 1674  if test "x$OPTFILE" != xNONE ; then
1674              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1675              exit 1              exit 1
1676          fi          fi
1677          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1678              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1679          fi          fi
1680      else      else
# Line 1454  if test "x$OPTFILE" != xNONE ; then Line 1683  if test "x$OPTFILE" != xNONE ; then
1683      fi      fi
1684  fi  fi
1685    
1686  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1687  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1688      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" != x ; then
1689            AD_OPTFILE=$MITGCM_AD_OF
1690        elif test "x$OPENAD" = x ; then
1691          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1692      else      else
1693          AD_OPTFILE=$MITGCM_AD_OF          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_oad
1694      fi      fi
1695  fi  fi
1696  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
# Line 1472  if test "x${AD_OPTFILE}" != xNONE ; then Line 1703  if test "x${AD_OPTFILE}" != xNONE ; then
1703              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1704              exit 1              exit 1
1705          fi          fi
1706          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1707              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1708          fi          fi
1709      else      else
# Line 1500  Error: no Fortran compiler: please speci Line 1731  Error: no Fortran compiler: please speci
1731  EOF  EOF
1732      exit 1      exit 1
1733  fi  fi
1734    if test "x$GET_FC_VERSION" != x ; then
1735      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1736      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1737      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1738      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1739      if test -s genmake_fc_vers1 ; then
1740        cat genmake_fc_vers1 >> $LOGFILE
1741      else
1742        cat genmake_fc_vers2 >> $LOGFILE
1743      fi
1744      echo "<-- compiler version ----" >> $LOGFILE
1745      rm -f genmake_fc_vers1 genmake_fc_vers2
1746    fi
1747    
1748  if test "x$CC" = x ; then  if test "x$CC" = x ; then
1749      CC=cc      look_for_C_compilers
 #     cat <<EOF 1>&2  
 # Error: no C compiler: please specify using one of the following:  
 #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"  
 #   2) the "-cc=XXX" command-line option  
 #   3) the "./genmake_local" file  
 # EOF  
 #     exit 1  
1750  fi  fi
1751    
1752  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1753      LINK=$FC      LINK=$FC
1754  fi  fi
# Line 1517  if test "x$MAKE" = x ; then Line 1756  if test "x$MAKE" = x ; then
1756      MAKE="make"      MAKE="make"
1757  fi  fi
1758  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1759      CPP=cpp      CPP="cpp -traditional -P"
1760  fi  fi
1761  #EH3 === UGLY ===  #EH3 === UGLY ===
1762  #  The following is an ugly little hack to check for $CPP in /lib/ and  #  The following is an ugly little hack to check for $CPP in /lib/ and
# Line 1544  EOF Line 1783  EOF
1783  else  else
1784      rm -f test_cpp      rm -f test_cpp
1785  fi  fi
1786    
1787  look_for_makedepend  look_for_makedepend
1788    
1789    #  Check that soft-link command is set and usable
1790  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1791      LN="ln -s"      LN="ln -s"
1792  fi  fi
# Line 1554  RETVAL=$? Line 1796  RETVAL=$?
1796  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1797      cat <<EOF 1>&2      cat <<EOF 1>&2
1798    
1799  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1800    command in the optfile.    command in the optfile.
1801    
1802  EOF  EOF
# Line 1572  check_for_broken_Ff Line 1814  check_for_broken_Ff
1814    
1815  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1816        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1817        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI"
1818    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1819    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1820  fi  fi
1821  if test ! "x$OMP" = x ; then  if test ! "x$OMP" = x ; then
1822        echo "  Add OMPFLAG and turn on OpenMP cpp macros"        echo "  Add OMPFLAG and turn on OpenMP cpp macros"
# Line 1589  fi Line 1833  fi
1833  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1834        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
1835        if test ! "x$FOOLAD" = x ; then        if test ! "x$FOOLAD" = x ; then
1836              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1837        else        else
1838              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1839        fi        fi
# Line 1625  if test ! "x$PAPI" = x ; then Line 1869  if test ! "x$PAPI" = x ; then
1869            echo "  Sticking with PAPI flop summary per timestep!"            echo "  Sticking with PAPI flop summary per timestep!"
1870        else        else
1871            echo "  Turning on performance analysis with PAPI"            echo "  Turning on performance analysis with PAPI"
1872            echo "  Please make sure PAPIINC, PAPILIB are defined"            echo "  Please make sure PAPIINC, PAPILIB are defined"
1873            DEFINES="$DEFINES -DUSE_PAPI"            DEFINES="$DEFINES -DUSE_PAPI"
1874            INCLUDES="$INCLUDES $PAPIINC"            INCLUDES="$INCLUDES $PAPIINC"
1875            LIBS="$LIBS $PAPILIB"            LIBS="$LIBS $PAPILIB"
# Line 1637  if test ! "x$PCL" = x ; then Line 1881  if test ! "x$PCL" = x ; then
1881            echo "  Sticking with PCL flop summary per timestep!"            echo "  Sticking with PCL flop summary per timestep!"
1882        else        else
1883            echo "  Turning on performance analysis with PCL"            echo "  Turning on performance analysis with PCL"
1884            echo "  Please make sure PCLINC, PCLLIB are defined"            echo "  Please make sure PCLINC, PCLLIB are defined"
1885            DEFINES="$DEFINES -DUSE_PCL"            DEFINES="$DEFINES -DUSE_PCL"
1886            INCLUDES="$INCLUDES $PCLINC"            INCLUDES="$INCLUDES $PCLINC"
1887            LIBS="$LIBS $PCLLIB"            LIBS="$LIBS $PCLLIB"
# Line 1647  if test ! "x$HPMT" = x ; then Line 1891  if test ! "x$HPMT" = x ; then
1891        if test ! "x$PAPI" = x ; then        if test ! "x$PAPI" = x ; then
1892            echo "  PAPI and the HPM Toolkit cannot co-exist!"            echo "  PAPI and the HPM Toolkit cannot co-exist!"
1893            echo "  Sticking with PAPI!"            echo "  Sticking with PAPI!"
1894        else if test ! "x$PCL" = x ; then        else
1895            if test ! "x$PCL" = x ; then
1896            echo "  PCL and the HPM Toolkit cannot co-exist!"            echo "  PCL and the HPM Toolkit cannot co-exist!"
1897            echo "  Sticking with PCL!"            echo "  Sticking with PCL!"
1898        else          else
1899            echo "  Turning on performance analysis with the HPM Toolkit"            echo "  Turning on performance analysis with the HPM Toolkit"
1900            echo "  Please make sure HPMTINC, HPMTLIB are defined"            echo "  Please make sure HPMTINC, HPMTLIB are defined"
1901            DEFINES="$DEFINES -DUSE_LIBHPM"            DEFINES="$DEFINES -DUSE_LIBHPM"
1902            INCLUDES="$INCLUDES $HPMTINC"            INCLUDES="$INCLUDES $HPMTINC"
1903            LIBS="$LIBS $HPMTLIB"            LIBS="$LIBS $HPMTLIB"
1904        fi          fi
1905        fi        fi
1906  fi  fi
1907  if test ! "x$GSL" = x ; then  if test ! "x$GSL" = x ; then
# Line 1737  rm -f genmake_tcomp* Line 1982  rm -f genmake_tcomp*
1982  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1983  check_HAVE_CLOC  check_HAVE_CLOC
1984  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1985        DEFINES="$DEFINES -DHAVE_CLOC"
1986      echo "yes"      echo "yes"
1987  else  else
1988      echo "no"      echo "no"
# Line 1751  rm -f genmake_t* Line 1997  rm -f genmake_t*
1997  printf "  Can we unlimit the stack size using $FC...  "  printf "  Can we unlimit the stack size using $FC...  "
1998  check_HAVE_SETRLSTK  check_HAVE_SETRLSTK
1999  if test "x$HAVE_SETRLSTK" = xt ; then  if test "x$HAVE_SETRLSTK" = xt ; then
2000        DEFINES="$DEFINES -DHAVE_SETRLSTK"
2001      echo "yes"      echo "yes"
2002  else  else
2003      echo "no"      echo "no"
# Line 1760  rm -f genmake_t* Line 2007  rm -f genmake_t*
2007  printf "  Can we register a signal handler using $FC...  "  printf "  Can we register a signal handler using $FC...  "
2008  check_HAVE_SIGREG  check_HAVE_SIGREG
2009  if test "x$HAVE_SIGREG" = xt ; then  if test "x$HAVE_SIGREG" = xt ; then
2010        DEFINES="$DEFINES -DHAVE_SIGREG"
2011      echo "yes"      echo "yes"
2012  else  else
2013      echo "no"      echo "no"
# Line 1769  rm -f genmake_t* Line 2017  rm -f genmake_t*
2017  printf "  Can we use stat() through C calls...  "  printf "  Can we use stat() through C calls...  "
2018  check_HAVE_STAT  check_HAVE_STAT
2019  if test "x$HAVE_STAT" != x ; then  if test "x$HAVE_STAT" != x ; then
2020        DEFINES="$DEFINES -DHAVE_STAT"
2021      echo "yes"      echo "yes"
2022  else  else
2023      echo "no"      echo "no"
# Line 1778  rm -f genmake_t* Line 2027  rm -f genmake_t*
2027  printf "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
2028  check_netcdf_libs  check_netcdf_libs
2029  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
2030        DEFINES="$DEFINES -DHAVE_NETCDF"
2031        echo "yes"
2032    else
2033        echo "no"
2034    fi
2035    
2036    printf "  Can we create LAPACK-enabled binaries...  "
2037    check_lapack_libs
2038    if test "x$HAVE_LAPACK" != x ; then
2039        DEFINES="$DEFINES -DHAVE_LAPACK"
2040        echo "yes"
2041    else
2042        echo "no"
2043    fi
2044    
2045    printf "  Can we call FLUSH intrinsic subroutine...  "
2046    check_HAVE_FLUSH
2047    if test "x$HAVE_FLUSH" = xt ; then
2048        DEFINES="$DEFINES -DHAVE_FLUSH"
2049      echo "yes"      echo "yes"
2050  else  else
2051      echo "no"      echo "no"
2052  fi  fi
 DEFINES="$DEFINES $IGNORE_TIME"  
2053    
2054    DEFINES="$DEFINES $IGNORE_TIME"
2055  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
2056      build_embed_encode      build_embed_encode
2057  fi  fi
2058  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
2059      ENABLE="$ENABLE embed_files"      ENABLE="$ENABLE embed_files"
2060    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
2061  fi  fi
2062    
   
2063  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
2064  printf "  Adding MODS directories: "  printf "  Adding MODS directories: "
2065  for d in $MODS ; do  for d in $MODS ; do
# Line 1807  for d in $MODS ; do Line 2075  for d in $MODS ; do
2075  done  done
2076  echo  echo
2077    
2078  if test "x${PLATFORM}" = x ; then  #if test "x${PLATFORM}" = x ; then
2079      PLATFORM=$p_PLATFORM  #    PLATFORM=$p_PLATFORM
2080  fi  #fi
2081    
2082  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
2083      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
# Line 1849  ERROR: neither of the two default script Line 2117  ERROR: neither of the two default script
2117      ${TOOLSDIR}/set64bitConst.sh      ${TOOLSDIR}/set64bitConst.sh
2118      ${TOOLSDIR}/set64bitConst.csh      ${TOOLSDIR}/set64bitConst.csh
2119    
2120    are working so please check paths or specify (with \$S64) a    are working so please check paths or specify (with \$S64) a
2121    working version of this script.    working version of this script.
2122    
2123  EOF  EOF
# Line 1861  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD Line 2129  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD
2129    
2130  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2131    
2132    #  Set Standard Code Directories:
2133    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2134        STANDARDDIRS="eesupp model"
2135    fi
2136    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2137    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2138    ckM=$?
2139    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2140    ckE=$?
2141    if test $ckM = 0 -a $ckE = 1 ; then
2142        STANDARDDIRS="$STANDARDDIRS eesupp"
2143    fi
2144    
2145  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2146  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2147  #  they appear as regular source code  #  they appear as regular source code
2148  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2149      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2150      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2151        ) > make_eesupp.errors 2>&1
2152      RETVAL=$?      RETVAL=$?
2153      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2154          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 1881  fi Line 2163  fi
2163  for pdir in exch2 regrid ; do  for pdir in exch2 regrid ; do
2164      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2165          echo "  Making source files in pkg/${pdir} from templates"          echo "  Making source files in pkg/${pdir} from templates"
2166          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2167            ) > make_${pdir}.errors 2>&1
2168          RETVAL=$?          RETVAL=$?
2169          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
2170              rm -f make_${pdir}.errors              rm -f make_${pdir}.errors
# Line 1894  for pdir in exch2 regrid ; do Line 2177  for pdir in exch2 regrid ; do
2177  done  done
2178    
2179  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2180  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2181      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2182      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2183          PDEPEND=$tmp  fi
2184      else  if  test "x${PKG_DEPEND}" = x ; then
2185          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2186          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2187  else  else
2188      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2189          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2190          exit 1          exit 1
2191      fi      fi
2192        echo "  getting package dependency info from  $PKG_DEPEND"
2193    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2194        get_pdepend_list $PKG_DEPEND
2195  fi  fi
2196  echo "  getting package dependency info from  $PDEPEND"  
2197  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2198  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2199  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2200      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2201      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2202  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2203  if test ! "x${RETVAL}" = x0 ; then  fi
2204      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2205      exit 1          echo "Warning:  No package groups information was specified."
2206            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2207    else
2208        if test ! -r ${PKG_GROUPS} ; then
2209            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2210            exit 1
2211        fi
2212        echo "  getting package groups info from      $PKG_GROUPS"
2213  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
2214    
2215  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2216  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2217  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2218  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2219      for i in "." $MODS ; do      for i in "." $MODS ; do
2220          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2221                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2222                  break                  break
2223          fi          fi
2224      done      done
2225  fi  fi
2226  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2227      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2228  fi      if test "x${PKG_GROUPS}" = x ; then
2229  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2230      echo "    default packages file disabled"          exit 1
2231        fi
2232  else  else
2233      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2234          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2235            exit 1
2236      else      else
2237          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2238          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2239          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2240          RETVAL=$?          RETVAL=$?
2241          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2242              printf "Error: can't parse default package list "              printf "Error: can't parse package list "
2243              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2244              exit 1              exit 1
2245          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         RET=1  
         while test $RET = 1 ; do expand_pkg_groups; RET=$?; done  
         echo "    after group expansion packages are:  $PACKAGES"  
2246      fi      fi
2247  fi  fi
2248    for i in $pkg_list ; do
2249        PACKAGES="$PACKAGES $i"
2250    done
2251    echo     "    before group expansion packages are:$PACKAGES"
2252    if test "x${PKG_GROUPS}" != x ; then
2253        RET=1
2254        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2255        echo "    after group expansion packages are: $PACKAGES"
2256    fi
2257    
2258  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2259    echo "" > $TMP.pack
2260  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2261      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2262  done  done
2263  for i in `grep  "-" ./.tmp_pack` ; do  for i in `grep  "-" $TMP.pack` ; do
2264      j=`echo $i | sed 's/[-]//'`      j=`echo $i | sed 's/[-]//'`
2265      DISABLE="$DISABLE $j"      DISABLE="$DISABLE $j"
2266  done  done
# Line 1984  for p in $PACKAGES ; do Line 2278  for p in $PACKAGES ; do
2278  done  done
2279  PACKAGES="$pack"  PACKAGES="$pack"
2280  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2281  echo "" > ./.tmp_pack  echo "" > $TMP.pack
2282  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2283  # Test if each explicitly referenced package exists  # Test if each explicitly referenced package exists
2284  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2285      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2286      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2287          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2288          exit 1          exit 1
2289      fi      fi
2290      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2291  done  done
2292  PACKAGES=  PACKAGES=
2293  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do  for i in `grep -v "-" $TMP.pack | sort | uniq` ; do
2294      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2295  done  done
2296  rm -f ./.tmp_pack  rm -f $TMP.pack
2297  echo "    packages are:  $PACKAGES"  echo "    packages are: $PACKAGES"
2298    
2299  #  Check for package MNC: if NetCDF is available, then build the MNC  #  Check for package MNC: if NetCDF is available, then build the MNC
2300  #  template files ; otherwise, delete mnc from the list of packages.  #  template files ; otherwise, delete mnc from the list of packages.
2301  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2302  RETVAL=$?  mnc_in=$?
2303  if test "x$RETVAL" = x0 ; then  if test "x$HAVE_NETCDF" != xt ; then
2304      if test "x$HAVE_NETCDF" != xt ; then      if test "x$mnc_in" = x0 ; then
2305          cat <<EOF          cat <<EOF
   
2306  *********************************************************************  *********************************************************************
2307  WARNING: the "mnc" package was enabled but tests failed to compile  WARNING: the "mnc" package was enabled but tests failed to compile
2308    NetCDF applications.  Please check that:    NetCDF applications.  Please check that:
2309    
2310    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2311    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2312         NetCDF library to link against.         NetCDF library to link against.
2313    
2314    Due to this failure, the "mnc" package is now DISABLED.    Due to this failure, the "mnc" package is now DISABLED.
2315  *********************************************************************  *********************************************************************
   
2316  EOF  EOF
2317          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2318          DISABLE="$DISABLE mnc"          DISABLE="$DISABLE mnc"
2319      else      else
2320          ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1      #  this prevent to add mnc (due to pdepend rules) if not available
2321          RETVAL=$?          DISABLE="$DISABLE mnc"
2322          if test "x${RETVAL}" = x0 ; then      fi
2323              rm -f make_mnc.errors  else
2324          else      # we have NetCDF, we try to build MNC template files
2325              echo "Error: problem encountered while building source files in pkg/mnc:"      ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2326              cat make_mnc.errors 1>&2      RETVAL=$?
2327        if test "x${RETVAL}" = x0 ; then
2328            rm -f make_mnc.errors
2329        else
2330            echo "Error: problem encountered while building source files in pkg/mnc:"
2331            cat make_mnc.errors 1>&2
2332            if test "x$mnc_in" = x0 ; then
2333              exit 1              exit 1
2334            else
2335                DISABLE="$DISABLE mnc"
2336          fi          fi
2337      fi      fi
2338  fi  fi
2339    
2340  #  Check for package PROFILES: if NetCDF is not available,  #  Check for package PROFILES: if NetCDF is not available,
2341  #  then delete profiles from the list of available packages.  #  then delete profiles from the list of available packages.
2342  echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1  if test "x$HAVE_NETCDF" != xt ; then
2343  RETVAL=$?      echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2344  if test "x$RETVAL" = x0 ; then      RETVAL=$?
2345      if test "x$HAVE_NETCDF" != xt ; then      if test "x$RETVAL" = x0 ; then
2346          cat <<EOF          cat <<EOF
   
2347  *********************************************************************  *********************************************************************
2348  WARNING: the "profiles" package was enabled but tests failed to  WARNING: the "profiles" package was enabled but tests failed to
2349    compile NetCDF applications.  Please check that:    compile NetCDF applications.  Please check that:
2350    
2351    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2352    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2353         NetCDF library to link against.         NetCDF library to link against.
2354    
2355    Due to this failure, the "profiles" package is now DISABLED.    Due to this failure, the "profiles" package is now DISABLED.
2356  *********************************************************************  *********************************************************************
   
2357  EOF  EOF
2358          PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2359          DISABLE="$DISABLE profiles"          DISABLE="$DISABLE profiles"
2360        else
2361        #  this prevent to add profiles (due to pdepend rules) if not available
2362            DISABLE="$DISABLE profiles"
2363        fi
2364    fi
2365    
2366    #  Make sure the openad package is enabled if using OpenAD
2367    if test "x$OPENAD" != x ; then
2368        echo " $PACKAGES " | grep ' openad ' > /dev/null 2>&1
2369        RETVAL=$?
2370        if test "x$RETVAL" != x0 ; then
2371            cat <<EOF
2372    
2373    *********************************************************************
2374    ERROR: when generating an adjoint with OpenAD, the openad package
2375      must be enabled.  Please add it to packages.conf.
2376    *********************************************************************
2377    
2378    EOF
2379            exit 1
2380      fi      fi
2381  fi  fi
2382    
2383  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2384  ck=    echo "  applying package dependency rules"
2385  while test "x$ck" != xtt ; do    ck=
2386      while test "x$ck" != xtt ; do
2387      i=0      i=0
2388      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2389      rtot=$nname      rtot=$nname
# Line 2080  while test "x$ck" != xtt ; do Line 2399  while test "x$ck" != xtt ; do
2399                  pin="t"                  pin="t"
2400              fi              fi
2401          done          done
2402            #  or in the current $STANDARDDIRS list?
2403            for p in $STANDARDDIRS ; do
2404                if test "x$p" = "x$pname" ; then pin="t" ; fi
2405            done
2406    
2407          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2408          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 2102  while test "x$ck" != xtt ; do Line 2425  while test "x$ck" != xtt ; do
2425    
2426          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2427          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2428              #echo "   " $pname ": need to add :" $dname              #echo "   " $pname ": need to add :" $dname
2429              in_dis="f"              in_dis="f"
2430              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2431                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 2123  while test "x$ck" != xtt ; do Line 2446  while test "x$ck" != xtt ; do
2446          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2447          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2448              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2449              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2450              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2451              exit 1              exit 1
2452          fi          fi
2453          i=`echo "$i + 1" | bc -l`          i=`echo "$i + 1" | bc -l`
2454          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2455      done      done
2456      ck=$ck"t"      ck=$ck"t"
2457  done    done
2458  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2459    fi
2460  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2461      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2462      if test -d $adr ; then      if test -d $adr ; then
# Line 2149  done Line 2473  done
2473    
2474  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2475  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2476  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2477  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2478  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2479  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2480  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 2167  for n in $names ; do Line 2491  for n in $names ; do
2491          done          done
2492          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2493              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2494              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2495          fi          fi
2496      fi      fi
2497  done  done
# Line 2178  for i in $PACKAGES ; do Line 2502  for i in $PACKAGES ; do
2502  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2503    
2504  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2505      case $i in      case $i in
2506          aim_v23)          aim_v23)
2507              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2508              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
2509              ;;              ;;
2510      esac      esac
# Line 2188  for i in $PACKAGES ; do Line 2512  for i in $PACKAGES ; do
2512    
2513  done  done
2514    
2515  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2516  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2517  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2518      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2519          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 2225  for i in $spaths ; do Line 2546  for i in $spaths ; do
2546      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2547          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2548          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2549          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2550          for n in $names ; do          for n in $names ; do
2551              test_for_package_in_cpp_options $CPP_OPTIONS $n              test_for_package_in_cpp_options $CPP_OPTIONS $n
2552          done          done
2553      fi      fi
2554      try="$i/CPP_EEOPTIONS.h"      try="$i/CPP_EEOPTIONS.h"
2555      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2556          echo "    found CPP_EEOPTIONS=\"$try\""          echo "    found CPP_EEOPTIONS=\"$try\""
2557          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2558  #**** not yet enabled ****  #**** not yet enabled ****
2559  #        test_for_mpi_in_cpp_eeoptions $try  #        test_for_mpi_in_cpp_eeoptions $try
2560  #**** not yet enabled ****  #**** not yet enabled ****
# Line 2247  fi Line 2568  fi
2568    
2569  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2570  #  compiler.  #  compiler.
2571  if test -f ./adSrcFiles.tmp ; then  if test -f $TMP.adSrcFiles ; then
2572      rm -f ./adSrcFiles.tmp      rm -f $TMP.adSrcFiles
2573  fi  fi
2574  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2575    touch $TMP.adSrcFiles
2576  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2577      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2578      for j in $list_files ; do      for j in $list_files ; do
2579          cat $i/$j >> adSrcFiles.tmp          cat $i/$j >> $TMP.adSrcFiles
2580      done      done
2581  done  done
2582  if test ! "x"$FS = "x.f" ; then  if test ! "x"$FS = "x.f" ; then
2583      cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f      cat $TMP.adSrcFiles | sed -e "s/\.f/.$FS/g" > $TMP.adSrcFiles_f
2584      mv -f adSrcFiles.tmp_f adSrcFiles.tmp      mv -f $TMP.adSrcFiles_f $TMP.adSrcFiles
2585  fi  fi
2586    
2587  echo  echo
# Line 2271  for i in $INCLUDEDIRS ; do Line 2593  for i in $INCLUDEDIRS ; do
2593      fi      fi
2594  done  done
2595    
2596  if test ! "x$DIVA" = x ; then  if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2597      echo "  Creating the pseudo-MPI include directory"      if test ! "x$MPIINCLUDEDIR" = x ; then
2598      INCLUDES="-I./mpi_headers $INCLUDES"          #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2599      rm -rf ./mpi_headers          #   checking for additional included headers (in case of chain of included
2600      mkdir -p ./mpi_headers          #   header); also set LOCAL_MPI_HEADERS (if not already set)
2601            mpi_headers_do_local_copy
     if test "x$MPIINCLUDEDIR" = x ; then  
         if test "x$MPIHOME" = x ; then  
             MPIHOME='/usr'  
         fi  
         MPIINCLUDEDIR='$MPIHOME/include'  
     fi  
       
     if test -r $MPIINCLUDEDIR/mpif.h ; then  
         for i in $MPI_HEADER_FILES; do  
             cp -p $MPIINCLUDEDIR/$i ./mpi_headers  
         done  
   
         perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h  
     else  
         echo " We cannot create a copy of mpif.h!"  
 #       exit -1  
2602      fi      fi
2603  fi  fi
2604    
2605  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2606  rm -rf .links.tmp  rm -rf $TMP.links
2607  mkdir .links.tmp  mkdir $TMP.links
2608  touch .links.tmp/foo  touch $TMP.links/foo
2609  if test ! -r ".links.tmp/foo" ; then  if test ! -r "$TMP.links/foo" ; then
2610      echo      echo
2611      echo "ERROR : something is wrong with your directory permissions or"      echo "ERROR : something is wrong with your directory permissions or"
2612      echo "   your user file-creation mask (\"umask\") since creating a"      echo "   your user file-creation mask (\"umask\") since creating a"
# Line 2316  if test ! -r ".links.tmp/foo" ; then Line 2622  if test ! -r ".links.tmp/foo" ; then
2622      echo      echo
2623      exit 1      exit 1
2624  fi  fi
2625  rm -f .links.tmp/foo  rm -f $TMP.links/foo
2626    
2627  if test "x$OPENAD" != x ; then  if test "x$OPENAD" != x ; then
2628      OAD_DONT_COMPILE="/dev/null"      OAD_DONT_COMPILE="/dev/null"
2629      OAD_DONT_TRANSFORM="/dev/null"      OAD_DONT_TRANSFORM="/dev/null"
2630      OAD_KEEP_ORIGINAL="/dev/null"      OAD_KEEP_ORIGINAL="/dev/null"
2631      OAD_CB2M_FILES="/dev/null"      OAD_CB2M_FILES="/dev/null"
2632        OADTOOLS="$TOOLSDIR/OAD_support"
2633      echo "  looking for dontCompile file:  "      echo "  looking for dontCompile file:  "
2634      for i in "." $MODS ; do      for i in "." $MODS $OADTOOLS ; do
2635          if test -r $i"/dontCompile" ; then          if test -r $i"/dontCompile" ; then
2636              OAD_DONT_COMPILE=$i"/dontCompile"              OAD_DONT_COMPILE=$i"/dontCompile"
2637              echo "     found $OAD_DONT_COMPILE"              echo "     found $OAD_DONT_COMPILE"
# Line 2332  if test "x$OPENAD" != x ; then Line 2639  if test "x$OPENAD" != x ; then
2639          fi          fi
2640      done      done
2641      echo "  looking for dontTransform file:  "      echo "  looking for dontTransform file:  "
2642      for i in "." $MODS ; do      for i in "." $MODS $OADTOOLS ; do
2643          if test -r $i"/dontTransform" ; then          if test -r $i"/dontTransform" ; then
2644              OAD_DONT_TRANSFORM=$i"/dontTransform"              OAD_DONT_TRANSFORM=$i"/dontTransform"
2645              echo "     found $OAD_DONT_TRANSFORM"              echo "     found $OAD_DONT_TRANSFORM"
# Line 2340  if test "x$OPENAD" != x ; then Line 2647  if test "x$OPENAD" != x ; then
2647          fi          fi
2648      done      done
2649      echo "  looking for keepOriginal file:  "      echo "  looking for keepOriginal file:  "
2650      for i in "." $MODS ; do      for i in "." $MODS $OADTOOLS ; do
2651          if test -r $i"/keepOriginal" ; then          if test -r $i"/keepOriginal" ; then
2652              OAD_KEEP_ORIGINAL=$i"/keepOriginal"              OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2653              echo "     found $OAD_KEEP_ORIGINAL"              echo "     found $OAD_KEEP_ORIGINAL"
# Line 2348  if test "x$OPENAD" != x ; then Line 2655  if test "x$OPENAD" != x ; then
2655          fi          fi
2656      done      done
2657      echo "  looking for cb2mFiles:  "      echo "  looking for cb2mFiles:  "
2658      for i in "." $MODS ; do      for i in "." $MODS $OADTOOLS ; do
2659          if test -r $i"/cb2mFiles" ; then          if test -r $i"/cb2mFiles" ; then
2660              OAD_CB2M_FILES=$i"/cb2mFiles"              OAD_CB2M_FILES=$i"/cb2mFiles"
2661              echo "     found $OAD_CB2M_FILES"              echo "     found $OAD_CB2M_FILES"
# Line 2358  if test "x$OPENAD" != x ; then Line 2665  if test "x$OPENAD" != x ; then
2665      echo "   OpenAD exceptions:  "      echo "   OpenAD exceptions:  "
2666  fi  fi
2667    
2668  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > $TMP.srclinks
2669  echo "" >> srclinks.tmp  echo "" >> $TMP.srclinks
2670  printf 'F77_SRC_FILES = ' > F77srclist.tmp  printf 'F77_SRC_FILES = ' > $TMP.F77srclist
2671  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp  printf 'NON_AD_F77_SRC_FILES = ' > $TMP.nonADF77srclist
2672  printf 'C_SRC_FILES = '   > csrclist.tmp  printf 'C_SRC_FILES = '   > $TMP.csrclist
2673  printf 'F90_SRC_FILES = ' > F90srclist.tmp  printf 'F90_SRC_FILES = ' > $TMP.F90srclist
2674  printf 'H_SRC_FILES = '   > hsrclist.tmp  printf 'H_SRC_FILES = '   > $TMP.hsrclist
2675  printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp  printf 'AD_FLOW_FILES = ' > $TMP.ad_flow_files
2676  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2677  for d in $alldirs ; do  for d in $alldirs ; do
2678      deplist=      deplist=
2679      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2680      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2681      if test "x$OPENAD" != x ; then      if test "x$OPENAD" != x ; then
2682          sfiles=`( echo $sfiles | grep -v _cb2m\. )`          sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2683      fi      fi
2684      for sf in $sfiles ; do      for sf in $sfiles ; do
2685          if test ! -r ".links.tmp/$sf" ; then          if test ! -r "$TMP.links/$sf" ; then
2686              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2687                  ignore_f=f                  ignore_f=f
2688                  case $d/$sf in                  case $d/$sf in
2689                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2690                          ignore_f=t                          ignore_f=t
2691                          ;;                          ;;
2692                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2693                          ignore_f=t                          ignore_f=t
2694                          ;;                          ;;
2695                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2696                          ignore_f=t                          ignore_f=t
2697                          ;;                          ;;
2698                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2699                          ignore_f=t                          ignore_f=t
2700                          ;;                          ;;
2701                    ./EMBEDDED_FILES.h)                    ./EMBEDDED_FILES.h)
2702                          ignore_f=t                          ignore_f=t
2703                          ;;                          ;;
2704                    *)                    *)
2705                          #  For the local directory *ONLY*,                          #  For the local directory *ONLY*,
2706                          #  ignore all soft-links                          #  ignore all soft-links
2707                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2708                              ignore_f=t                              ignore_f=t
2709                          else                          else
2710                              touch .links.tmp/$sf                              touch $TMP.links/$sf
2711                              deplist="$deplist $sf"                              deplist="$deplist $sf"
2712                          fi                          fi
2713                          ;;                          ;;
2714                  esac                  esac
2715                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2716                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2717                      case $extn in                      case $extn in
2718                        F)                        F)
2719                          echo    " \\"  >> F77srclist.tmp                          echo    " \\"  >> $TMP.F77srclist
2720                          printf " $sf" >> F77srclist.tmp                          printf " $sf" >> $TMP.F77srclist
2721                          if test "x$OPENAD" != x ; then                          if test "x$OPENAD" = x ; then
2722                                basename=${sf%%.F}
2723                                isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2724                                if test -z "$isAD" ; then
2725                                    echo    " \\"  >> $TMP.nonADF77srclist
2726                                    printf " $sf" >> $TMP.nonADF77srclist
2727                                fi
2728                            else #- OpenAD case:
2729                              basename=${sf%%.F}                              basename=${sf%%.F}
2730                              isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`                              isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2731                              if test -z "$isAD" ; then                              if test -z "$isAD" ; then
2732                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2733                                  if test -z "$toBeIgnored" ; then                                  if test -z "$toBeIgnored" ; then
2734                                      echo    " \\"  >> nonADF77srclist.tmp                                      echo    " \\"  >> $TMP.nonADF77srclist
2735                                      printf " $sf" >> nonADF77srclist.tmp                                      printf " $sf" >> $TMP.nonADF77srclist
2736                                  else                                  else
2737                                      echo "    not to be compiled   :  $sf"                                      echo "    not to be compiled   :  $sf"
2738                                  fi                                  fi
2739                              else # file is initially listed as an AD file we want to exclude it                              else # file is initially listed as an AD file we want to exclude it
2740                                   # or we want to retain the untransformed version                                   # or we want to retain the untransformed version
2741                                  notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`                                  notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2742                                  untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`                                  untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2743                                  if test -n "$notToBeTransformed"; then                                  if test -n "$notToBeTransformed"; then
2744                                      echo "    not to be transformed:  $sf"                                      echo "    not to be transformed:  $sf"
2745                                  fi                                  fi
2746                                  if test -n "$untransformedVersionToBeKept" ; then                                  if test -n "$untransformedVersionToBeKept" ; then
2747                                      echo "    original to be kept  :  $sf"                                      echo "    original to be kept  :  $sf"
2748                                  fi                                      fi
2749                                  if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then                                  if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2750                                      echo    " \\"  >> nonADF77srclist.tmp                                      echo    " \\"  >> $TMP.nonADF77srclist
2751                                      printf " $sf" >> nonADF77srclist.tmp                                      printf " $sf" >> $TMP.nonADF77srclist
2752                                  fi                                  fi
2753                              fi                              fi
2754                          fi                          fi
2755                          ;;                          ;;
2756                      F90)                      F90)
2757                          echo    " \\"  >> F90srclist.tmp                          echo    " \\"  >> $TMP.F90srclist
2758                          printf " $sf" >> F90srclist.tmp                          printf " $sf" >> $TMP.F90srclist
2759                          ;;                          ;;
2760                      c)                      c)
2761                          echo    " \\"  >> csrclist.tmp                          echo    " \\"  >> $TMP.csrclist
2762                          printf " $sf" >> csrclist.tmp                          printf " $sf" >> $TMP.csrclist
2763                          ;;                          ;;
2764                      h)                      h)
2765                          echo    " \\"  >> hsrclist.tmp                          echo    " \\"  >> $TMP.hsrclist
2766                          printf " $sf" >> hsrclist.tmp                          printf " $sf" >> $TMP.hsrclist
2767                          ;;                          ;;
2768                      flow)                      flow)
2769                          echo    " \\"  >> ad_flow_files.tmp                          echo    " \\"  >> $TMP.ad_flow_files
2770                          printf " $sf" >> ad_flow_files.tmp                          printf " $sf" >> $TMP.ad_flow_files
2771                          ;;                          ;;
2772                     esac                     esac
2773                  fi                  fi
# Line 2462  for d in $alldirs ; do Line 2776  for d in $alldirs ; do
2776      done      done
2777      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2778        if test "$d" != "." ; then        if test "$d" != "." ; then
2779          echo "" >> srclinks.tmp          echo "" >> $TMP.srclinks
2780          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> $TMP.srclinks
2781          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> $TMP.srclinks
2782  # We need to make sure that the link isn't already there.  # We need to make sure that the link isn't already there.
2783  # This may happen when make thinks that a header file has to be "remade"  # This may happen when make thinks that a header file has to be "remade"
2784  # because a module it depends on has changed.  In this case we do nothing.  # because a module it depends on has changed.  In this case we do nothing.
2785          printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp          printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> $TMP.srclinks
2786        fi        fi
2787      fi      fi
2788  done  done
2789  rm -rf .links.tmp  rm -rf $TMP.links
2790  echo "" >> F77srclist.tmp  echo "" >> $TMP.F77srclist
2791  echo "" >> nonADF77srclist.tmp  echo "" >> $TMP.nonADF77srclist
2792  echo "" >> csrclist.tmp  echo "" >> $TMP.csrclist
2793  echo "" >> F90srclist.tmp  echo "" >> $TMP.F90srclist
2794  echo "" >> hsrclist.tmp  echo "" >> $TMP.hsrclist
2795  echo "" >> ad_flow_files.tmp  echo "" >> $TMP.ad_flow_files
2796    
2797  CMDLINE=$0  CMDLINE=$0
2798  for xx in "$@" ; do nw=`echo $xx | wc -w`  for xx in "$@" ; do nw=`echo $xx | wc -w`
2799      if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"      if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2800                          else CMDLINE="$CMDLINE '$xx'" ; fi                          else CMDLINE="$CMDLINE '$xx'" ; fi
2801  done  done
2802    
2803  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2804      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2805  fi  fi
2806  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2807  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 2506  EXE_SVD=$EXECUTABLE"_svd" Line 2820  EXE_SVD=$EXECUTABLE"_svd"
2820  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2821  #  #
2822  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2823  #  #
2824  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2825  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2826  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 2517  cat >>$MAKEFILE <<EOF Line 2831  cat >>$MAKEFILE <<EOF
2831  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2832  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2833  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2834  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2835  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2836  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 2526  cat >>$MAKEFILE <<EOF Line 2838  cat >>$MAKEFILE <<EOF
2838  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2839    
2840  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2841  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2842  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2843  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2844  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2845  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2846  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2847    OADTOOLS    = ${OADTOOLS}
2848    
2849  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2850  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 2552  else Line 2865  else
2865      echo "EMBEDDED_FILES = " >>$MAKEFILE      echo "EMBEDDED_FILES = " >>$MAKEFILE
2866  fi  fi
2867    
2868    # extract default cpp search path so we can pass it to makedepend
2869    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2870    
2871  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2872  # Unix ln (link)  # Unix ln (link)
2873  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2874  # Dependency generator  # Dependency generator
2875  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2876  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 2574  LINK = ${LINK} ${LDADD} Line 2888  LINK = ${LINK} ${LDADD}
2888  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2889  # Includes for CPP  # Includes for CPP
2890  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2891    # default CPP includes for makedepend
2892    CPPINCLUDES = ${CPPINCLUDES}
2893  # Flags for KPP  # Flags for KPP
2894  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2895  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
# Line 2591  NOOPTFILES = ${NOOPTFILES} Line 2907  NOOPTFILES = ${NOOPTFILES}
2907  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2908  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2909  LIBS = ${LIBS}  LIBS = ${LIBS}
2910  # Name of the Mekfile  # Name of the makefile
2911  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2912    # Name of the make program
2913    MAKE = ${MAKE}
2914    
2915  EOF  EOF
2916    
2917  cat F77srclist.tmp      >> $MAKEFILE  cat $TMP.F77srclist      >> $MAKEFILE
2918  cat nonADF77srclist.tmp >> $MAKEFILE  cat $TMP.nonADF77srclist >> $MAKEFILE
2919  cat csrclist.tmp        >> $MAKEFILE  cat $TMP.csrclist        >> $MAKEFILE
2920  cat F90srclist.tmp      >> $MAKEFILE  cat $TMP.F90srclist      >> $MAKEFILE
2921  cat hsrclist.tmp        >> $MAKEFILE  cat $TMP.hsrclist        >> $MAKEFILE
2922  cat ad_flow_files.tmp   >> $MAKEFILE  cat $TMP.ad_flow_files   >> $MAKEFILE
2923    
2924  rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp  rm -f $TMP.F77srclist $TMP.nonADF77srclist $TMP.csrclist $TMP.F90srclist $TMP.hsrclist $TMP.ad_flow_files
2925    
2926  echo >> $MAKEFILE  echo >> $MAKEFILE
2927    
2928  # add definitions for preprocessed sources  # add definitions for preprocessed sources
2929  # and note that not all systems allow case sensitive extensions  # and note that not all systems allow case sensitive extensions
2930  # hence the $FS and $FS90 here.  # hence the $FS and $FS90 here.
2931  # for fixed format f90 files we use ff90 or FF90 resp  # for fixed format f90 files we use ff90 or FF90 resp
2932  # but these are not expected to be the original source files  # but these are not expected to be the original source files
2933    
2934  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2935  echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE  echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2936  echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2937  echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE  echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2938  echo >> $MAKEFILE  echo >> $MAKEFILE
2939  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2940  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2941    
2942  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2943    
2944  all: \$(EXECUTABLE)  all: fwd_exe_target
2945    fwd_exe_target:
2946            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2947            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2948            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2949            @-rm -f ad_config.template
2950            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2951    
2952  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2953          @echo Creating \$@ ...          @echo Creating \$@ ...
2954          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2955    
2956  depend:  depend:
2957          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2958          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2959          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2960          -rm -f makedepend.out          -rm -f makedepend.out
2961    
# Line 2639  libmitgcmuv.a: \$(OBJFILES) Line 2965  libmitgcmuv.a: \$(OBJFILES)
2965          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
2966          ar d   libmitgcmuv.a main.o          ar d   libmitgcmuv.a main.o
2967    
2968    obj: \$(OBJFILES)
2969    
2970  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2971    
2972  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2973    
2974  output.txt: \$(EXECUTABLE)  # remove most of the files that "make" generates
         @printf 'running ... '  
         @\$(EXECUTABLE) > \$@  
   
2975  clean:  clean:
2976          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2977          -rm -rf *.o          -rm -rf *.o
2978          -rm -rf *.$FS *.flowdir          -rm -rf *.$FS *.flowdir
2979          -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*          -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2980    
2981    # remove most of the files that "make" and "make depend" generate
2982  Clean:  Clean:
2983          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2984          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2985          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2986          -rm -f genmake_state genmake_*optfile genmake_warnings genmake_errors          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2987          -rm -f make.log run.log f90mkdepend.log *.bak  
2988          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log  # remove also the executable, files that "genmake2" generates (except Makefile)
2989    #         and output from a run (plus log files from testreport)
2990  CLEAN:  CLEAN:
2991          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2992            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2993            -rm -f $LOGFILE genmake_state genmake_*optfile
2994            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2995            -rm -rf mpi_headers mnc_test_*
2996          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2997          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2998          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2999          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime          -rm -f *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
3000            -rm -f datetime costfinal divided.ctrl snapshot* output_adm.txt.diva_*
3001          -rm -f *_MIT_CE_000.opt0000 costfunction*0000          -rm -f *_MIT_CE_000.opt0000 costfunction*0000
3002          -rm -rf mnc_test_*          -rm -f oad_cp.[0-9][0-9][0-9].?????
3003    
 #eh3 Makefile: makefile  
3004  makefile:  makefile:
3005          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
3006  cleanlinks:  cleanlinks:
# Line 2677  cleanlinks: Line 3009  cleanlinks:
3009  # Special targets (SPECIAL_FILES) which are created by make  # Special targets (SPECIAL_FILES) which are created by make
3010  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
3011          @echo Creating \$@ ...          @echo Creating \$@ ...
3012          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
3013  AD_CONFIG.h:  AD_CONFIG.h:
3014          @echo Creating \$@ ...          @echo Creating \$@ ...
3015          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
3016  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
3017          @echo Creating \$@ ...          @echo Creating \$@ ...
3018          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
# Line 2699  if test "x$EMBED_SRC" = xt ; then Line 3031  if test "x$EMBED_SRC" = xt ; then
3031    
3032  decode_files.o : EMBEDDED_FILES.h  decode_files.o : EMBEDDED_FILES.h
3033    
3034  ##  \$(F77_PP_SRC_FILES)  ##  \$(F77_PP_SRC_FILES)
3035  all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile  all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3036          @echo Creating \$@ ...          @echo Creating \$@ ...
3037          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
# Line 2720  cat >>$MAKEFILE <<EOF Line 3052  cat >>$MAKEFILE <<EOF
3052  ## This nullifies any default implicit rules concerning these two file types:  ## This nullifies any default implicit rules concerning these two file types:
3053  ## %.o : %.F  ## %.o : %.F
3054    
3055    # C preprocessing and replacing the _d in constants:
3056    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3057    
3058  .F.$FS:  .F.$FS:
3059          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3060  .$FS.o:  .$FS.o:
3061          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3062    .F.o:
3063            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3064  .F90.$FS90:  .F90.$FS90:
3065          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3066  .FF90.f$FS90:  .FF90.f$FS90:
3067          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3068  .$FS90.o:  .$FS90.o:
3069          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3070  .f$FS90.o:  .f$FS90.o:
# Line 2736  cat >>$MAKEFILE <<EOF Line 3073  cat >>$MAKEFILE <<EOF
3073  .c.o:  .c.o:
3074          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3075  .flow.flowdir:  .flow.flowdir:
3076          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3077    
3078  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3079  .F.p:  .F.p:
3080          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3081  .p.$FS:  .p.$FS:
3082          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3083    
# Line 2750  EOF Line 3087  EOF
3087  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
3088  #===  for TAMC/TAF  ======================  #===  for TAMC/TAF  ======================
3089    
3090  if test "x$OPENAD" = x ; then  if test "x$OPENAD" = x ; then
3091    
3092  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3093    
# Line 2759  TAF            = ${TAF} Line 3096  TAF            = ${TAF}
3096    
3097  TAF_EXTRA      = ${TAF_EXTRA}  TAF_EXTRA      = ${TAF_EXTRA}
3098  TAMC_EXTRA     = ${TAMC_EXTRA}  TAMC_EXTRA     = ${TAMC_EXTRA}
3099    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3100    
3101  EOF  EOF
3102    
# Line 2776  done Line 3114  done
3114  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
3115  echo >> $MAKEFILE  echo >> $MAKEFILE
3116  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
3117  AD_FILES=`cat adSrcFiles.tmp`  AD_FILES=`cat $TMP.adSrcFiles`
3118  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3119      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
3120      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
3121  done  done
3122  echo >> $MAKEFILE  echo >> $MAKEFILE
3123  rm -f adSrcFiles.tmp  rm -f $TMP.adSrcFiles
3124    
3125  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3126    
3127  # ... AD ...  # ... AD ...
3128  adall: \$(EXE_AD)  adall: ad_exe_target
3129  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
3130  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
3131    
3132  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)  ad_exe_target:
3133          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @echo Update AD_CONFIG.h and make \$(EXE_AD)
3134            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3135            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3136            @-rm -f ad_config.template
3137            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3138    
3139    ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3140            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3141          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3142          -rm -f ad_config.template          @-rm -f ad_config.template
3143          @make \$(F77_PP_SRC_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3144          @make \$(FLOFILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3145          cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3146    
3147  ad_taf_output.$FS: ad_input_code.$FS  ad_taf_output.$FS: ad_input_code.$FS
3148            @-rm -f ad_input_code_ad.$FS ; echo ''
3149          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3150          ls -l ad_input_code_ad.$FS          ls -l ad_input_code_ad.$FS
3151          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
# Line 2809  adtafonly: Line 3155  adtafonly:
3155          ls -l ad_input_code_ad.$FS          ls -l ad_input_code_ad.$FS
3156          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3157    
3158  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)  \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3159          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3160    
3161  ad_tamc_output.$FS: ad_input_code.$FS  ad_tamc_output.$FS: ad_input_code.$FS
3162          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3163          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3164    
3165  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
3166          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3167    
3168  adonlyfwd:  adonlyfwd:
3169          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3170    
3171  adtrick:  adtrick:
3172          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3173    
3174    adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
3175    
3176  # ... FTL ...  # ... FTL ...
3177  ftlall: ftl_taf  ftlall: ftl_exe_target
3178  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
3179  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
3180    
3181  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)  ftl_exe_target:
3182          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3183          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3184          -rm -f ftl_config.template          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3185          @make \$(F77_PP_SRC_FILES)          @-rm -f ad_config.template
3186          @make \$(AD_FLOW_FILES)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3187          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS  
3188    ftl_input_code.$FS: \$(AD_FILES)
3189            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3190            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3191            @-rm -f ad_config.template
3192            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3193            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3194            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3195    
3196  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_taf_output.$FS: ftl_input_code.$FS
3197            @-rm -f ftl_input_code_tl.$FS ; echo ''
3198          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3199          ls -l ftl_input_code_ftl.$FS          ls -l ftl_input_code_tl.$FS
3200          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3201    
3202  ftltafonly:  ftltafonly:
3203          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3204          ls -l ftl_input_code_ftl.$FS          ls -l ftl_input_code_tl.$FS
3205          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3206    
3207  ftl_taf: ftl_taf_output.o \$(OBJFILES)  \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3208          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3209    
3210  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
3211          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3212          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3213    
3214  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3215          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
3216    
3217  # ... SVD ...  # ... SVD ...
3218  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
# Line 2879  svd_touch: Line 3234  svd_touch:
3234          touch ad_taf_output.$FS ftl_taf_output.$FS          touch ad_taf_output.$FS ftl_taf_output.$FS
3235          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3236          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3237          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3238          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3239          -rm -f ftl_config.template          @-rm -f ad_config.template
3240    
3241  EOF  EOF
3242    
3243  fi  fi
3244    
3245  #===  for OpenAD  ========================  #===  for OpenAD  ========================
3246    
3247  if test "x$OPENAD" != x ; then  if test "x$OPENAD" != x ; then
3248    
3249  # ============ begin OpenAD specific section ==============  # ============ begin OpenAD specific section ==============
3250    
3251  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3252    # ... OpenAD ...
3253    
3254  # all the source files linked from the various locations:  # all the source files linked from the various locations:
3255  ALL_LINKED_FILES= \  ALL_LINKED_FILES= \
3256  \$(F77_SRC_FILES) \  \$(F77_SRC_FILES) \
3257  \$(C_SRC_FILES) \  \$(C_SRC_FILES) \
# Line 2933  for i in `cat ${OAD_CB2M_FILES}` ; do Line 3289  for i in `cat ${OAD_CB2M_FILES}` ; do
3289    echo    " \\" >> $MAKEFILE    echo    " \\" >> $MAKEFILE
3290    printf " ${i}_mod.f$FS90" >> $MAKEFILE    printf " ${i}_mod.f$FS90" >> $MAKEFILE
3291  done  done
3292  AD_FILES=`cat adSrcFiles.tmp`  AD_FILES=`cat $TMP.adSrcFiles`
3293  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3294    basename=${i%%.f}    basename=${i%%.f}
3295    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
# Line 2943  for i in $AD_FILES ; do Line 3299  for i in $AD_FILES ; do
3299    fi    fi
3300  done  done
3301  echo >> $MAKEFILE  echo >> $MAKEFILE
3302  rm -f adSrcFiles.tmp  rm -f $TMP.adSrcFiles
3303    
3304  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3305    
3306  adAll: \$(EXE_AD)  adAll: ad_exe_target
3307  .PHONY: adAll  .PHONY: adAll
3308    
3309    ad_exe_target:
3310            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3311            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3312            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3313            @-rm -f ad_config.template
3314            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3315    
3316  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3317    
3318  .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)  .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3319    
3320  .PHONY: adDepend  .PHONY: adDepend
3321  adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)  adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3322          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3323          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3324          -rm -f makedepend.out          -rm -f makedepend.out
3325    
# Line 2965  w2f__types.F90 \ Line 3328  w2f__types.F90 \
3328  OAD_active.F90 \  OAD_active.F90 \
3329  OAD_cp.F90 \  OAD_cp.F90 \
3330  OAD_rev.F90 \  OAD_rev.F90 \
3331  OAD_tape.F90          OAD_tape.F90 \
3332    revolve.F90
3333    
3334  OPENAD_SUPPORT_C_SRC_FILES = \  OPENAD_SUPPORT_C_SRC_FILES = \
3335  iaddr.c \  iaddr.c \
# Line 2974  timeRatio.c Line 3338  timeRatio.c
3338  f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)  f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3339          cat \$^ > \$@          cat \$^ > \$@
3340    
3341  f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90  f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3342          cat \$^ > \$@          cat \$^ > \$@
3343    
3344  f95_test.out: f95_test_mods.f90 f95_test.f90  f95_test.out: f95_test_mods.f90 f95_test.f90
3345          f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1          f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3346          f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1          f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3347    
3348  # the file included below is created by the  CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
 # postProcessor and its inclusion sets the  
 # variable POSTPROCESSEDFILES  
 # used below. Because the file is made during  
 # make it won't be read until the second (recursive)  
 # invocation in the rule below  
 -include postProcess.make  
3349    
3350  AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)  AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3351    
3352  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3353    
3354  postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)  \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
 ifeq (\$(MAKELEVEL),0)  
         \$(MAKE) adAll  
 else  
         touch \$@  
 endif  
   
 \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)  
 ifeq (\$(MAKELEVEL),1)  
3355          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
 else  
         touch \$@  
 endif  
3356    
3357  # makefile debug rule  # create sources files modules from header files containing common blocks
3358  openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90  %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3359  .PHONY: openad          \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3360    
3361  # create the module files  # create new header files with USE statements for the new modules made above
3362  %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk  %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3363          ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk          \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3364    
3365  # create the header files  # change the include directives of everybody to refer to  the new header files with the USE statements
3366  %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk  %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3367          ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)          \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
   
 # change everybody else to use the new module files:  
 %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash  
         ../OAD_support/cb2mUseModules.bash $< ${MPI}  
3368    
3369  # makefile debug rule  # makefile debug rule
3370  small_f: \$(CB2M_F90_PP_SRC_FILES)  small_f: \$(CB2M_F90_PP_SRC_FILES)
3371  .PHONY: small_f  .PHONY: small_f
3372    
 ad_output.txt: \$(EXE_AD)  
         @printf 'linking data files ... '  
         \$(LN) -f ../input_ad/data* ../input_ad/eedata .  
         \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .  
         @printf 'running ... '  
         @./\$(EXE_AD) > \$@  
   
 CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)  
3373  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3374          cat \$^ > \$@          cat \$^ > \$@
3375    
 # strip all comments and blanks to reduce  
 # the file size in order to reduce perl's memory requirements  
 ad_input_code_sf.f$FS90 : ad_input_code.f$FS90  
         cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@  
   
 # mfef90 preprocessing  
 # expand statement functions  
 # expose mfef90 specific substring handling  
 # add the w2f__types module  
 ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90  
         ./mfef90 -r8 -z -F -N132 \$<  
         mv \$<.B \$(basename \$<).B  
         ./whirl2f -openad \$(basename \$<).B  
         cat w2f__types.f90 \$(basename \$<).w2f.f > \$@  
   
3376  # canonicalizer  # canonicalizer
3377  ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py  ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3378          ./preProcess.py --timing --r8 -H -S \$< -o \$@          \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3379    
3380    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3381    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3382            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3383    
3384  # F -> WHIRL  # F -> WHIRL
3385  # note that the canonicalized version cuts off at col 72  ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3386  # doing this also for string constants which is ok as long          \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
 # as we are in fixed mode and cut of exactly there.  
 # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)  
 # characters respectively.  
 ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90  
         ./mfef90 -r8 -z -F \$<  
         mv \$<.B \$@  
3387    
3388  # WHIRL -> XAIF  # WHIRL -> XAIF
3389  ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif  ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3390          ./whirl2xaif -s -n --debug 1 -o \$@ \$<          \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3391    
3392  # XAIF -> XAIF'  # XAIF -> XAIF'
3393  ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver  ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3394          ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r          \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3395    
3396  # XAIF' -> WHIRL'  # XAIF' -> WHIRL'
3397  ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl  ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3398          ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<          \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3399    
3400  # WHIRL' -> F'  # WHIRL' -> F'
3401  ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be  ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3402          ./whirl2f -FLIST:ftn_file=\$@ -openad \$<          \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3403    
3404  # insert template directives  # insert template directives
3405  ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash  ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3406          ../OAD_support/insertTemplateDir.bash \$< \$@          \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3407    
3408  PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F  PPEXTRAS=\$(notdir \$(wildcard \${OADTOOLS}/ad_template.*.F)) ad_inline.F
3409  # postprocess F'  # postprocess F'
3410  postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)  postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3411          # the target is a placeholder to signal execution of the rule          \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ad_inline.f \$<
3412            # the target is a placeholder to trigger a single execution of the rule
3413          touch \$@          touch \$@
3414          # this step also creates the file postProcess.make but we cannot  # put this so make knows about the postprocessing output
3415          # name it as the target or else make will try to remake it for  OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
         # the include directive above for any rule, e.g. make clean  
         ./postProcess.py --progress --timing --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<  
3416    
3417  # setup some links  # link the XAIF schema files
3418  %.xsd:  %.xsd:
3419          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3420    
 mfef90:  
         \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .  
   
3421  # link the support files:  # link the support files:
3422  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES) \$(PPEXTRAS):
3423          \$(LN) ../OAD_support/\$@ .          \$(LN) \${OADTOOLS}/\$@ .
   
 whirl2xaif xaif2whirl:  
         \$(LN) \${OPENADFORTTK}/bin/\$@ .  
3424    
3425  preProcess.py postProcess.py:  AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag
         \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .  
   
 whirl2f whirl2f_be:  
         \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .  
   
 oadDriver:  
         \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@  
   
 AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)  
3426    
3427  # ============ end OpenAD specific section ==============  # ============ end OpenAD specific section ==============
3428    
# Line 3156  for i in $NOOPTFILES ; do Line 3458  for i in $NOOPTFILES ; do
3458  done  done
3459    
3460  echo "  Add rules for links"  echo "  Add rules for links"
3461  cat srclinks.tmp >> $MAKEFILE  cat $TMP.srclinks >> $MAKEFILE
3462  rm -f srclinks.tmp  rm -f $TMP.srclinks
3463    
3464  echo "  Adding makedepend marker"  echo "  Adding makedepend marker"
3465  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE
# Line 3165  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3467  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3467  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3468    
3469  # Create special header files  # Create special header files
3470  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3471  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3472      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3473  else  else
# Line 3179  else Line 3481  else
3481      fi      fi
3482  fi  fi
3483  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3484      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3485  fi  fi
3486    
   
3487  #  Write the "state" for future records  #  Write the "state" for future records
3488  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3489      printf "" > genmake_state      printf "" > genmake_state
3490      for i in $gm_state ; do      for i in $gm_state ; do
3491          t1="t2=\$$i"          t1="t2=\$$i"
3492          eval $t1          eval $t1
3493          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3494      done      done
3495  fi  fi

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