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revision 1.164 by ce107, Tue Jul 31 22:27:01 2007 UTC revision 1.204 by jmc, Wed Mar 10 15:49:54 2010 UTC
# Line 519  Usage: "$0" [OPTIONS] Line 519  Usage: "$0" [OPTIONS]
519        -pdefault=NAME | --pdefault=NAME        -pdefault=NAME | --pdefault=NAME
520            Get the default package list from "NAME".            Get the default package list from "NAME".
521    
522        -bash NAME
523              Explicitly specify the Bourne or BASH shell to use
524    
525      -make NAME | -m NAME      -make NAME | -m NAME
526        --make=NAME | -m=NAME        --make=NAME | -m=NAME
527            Use "NAME" for the MAKE program. The default is "make" but            Use "NAME" for the MAKE program. The default is "make" but
# Line 578  Usage: "$0" [OPTIONS] Line 581  Usage: "$0" [OPTIONS]
581            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
582            is being used.            is being used.
583    
584        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
585              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
586              *only* works if CPP_EEOPTIONS.h allows this.
587    
588      -ignoretime | -ignore_time | --ignoretime | --ignore_time      -ignoretime | -ignore_time | --ignoretime | --ignore_time
589            Ignore all the "wall clock" routines entirely.  This will            Ignore all the "wall clock" routines entirely.  This will
590            not in any way hurt the model results -- it simply means            not in any way hurt the model results -- it simply means
# Line 611  Usage: "$0" [OPTIONS] Line 618  Usage: "$0" [OPTIONS]
618            set to PATH. i.e. Include files from \$PATH/include, link to libraries            set to PATH. i.e. Include files from \$PATH/include, link to libraries
619            from \$PATH/lib and use binaries from \$PATH/bin.            from \$PATH/lib and use binaries from \$PATH/bin.
620    
621        -omp | --omp
622              Activate OpenMP code + use Compiler option OMPFLAG
623        -omp=OMPFLAG | --omp=OMPFLAG
624              Activate OpenMP code + use Compiler option OMPFLAG
625    
626      -es | --es | -embed-source | --embed-source      -es | --es | -embed-source | --embed-source
627            Embed a tarball containing the full source code            Embed a tarball containing the full source code
628            (including the Makefile, etc.) used to build the            (including the Makefile, etc.) used to build the
629            executable [off by default]            executable [off by default]
630    
     -bash NAME  
           Explicitly specify the Bourne or BASH shell to use  
   
631    While it is most often a single word, the "NAME" variables specified    While it is most often a single word, the "NAME" variables specified
632    above can in many cases be a space-delimited string such as:    above can in many cases be a space-delimited string such as:
633    
# Line 630  Usage: "$0" [OPTIONS] Line 639  Usage: "$0" [OPTIONS]
639    
640    For more detailed genmake documentation, please see:    For more detailed genmake documentation, please see:
641    
642      http://mitgcm.org/devel_HOWTO/      http://mitgcm.org/public/devel_HOWTO/
643    
644  EOF  EOF
645    
# Line 746  void FC_NAMEMANGLE(cloc) ( double *curti Line 755  void FC_NAMEMANGLE(cloc) ( double *curti
755   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
756  }  }
757  EOF  EOF
758      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
759        echo $COMM >> genmake_warnings
760        $COMM >> genmake_warnings 2>&1
761      RET_C=$?      RET_C=$?
762      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
763        program hello        program hello
# Line 805  void FC_NAMEMANGLE(sigreg) (int * aip) Line 816  void FC_NAMEMANGLE(sigreg) (int * aip)
816      return;      return;
817  }  }
818  EOF  EOF
819      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
820        echo $COMM >> genmake_warnings
821        $COMM >> genmake_warnings 2>&1
822      RET_C=$?      RET_C=$?
823      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
824        program hello        program hello
# Line 853  void FC_NAMEMANGLE(setrlstk) () Line 866  void FC_NAMEMANGLE(setrlstk) ()
866      return;      return;
867  }  }
868  EOF  EOF
869      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
870        echo $COMM >> genmake_warnings
871        $COMM >> genmake_warnings 2>&1
872      RET_C=$?      RET_C=$?
873      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
874        program hello        program hello
# Line 897  void FC_NAMEMANGLE(tfsize) ( int *nbyte Line 912  void FC_NAMEMANGLE(tfsize) ( int *nbyte
912          *nbyte = -1;          *nbyte = -1;
913  }  }
914  EOF  EOF
915      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
916        echo $COMM >> genmake_warnings
917        $COMM >> genmake_tc.log 2>&1
918      RET_C=$?      RET_C=$?
919      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
920        program hello        program hello
# Line 1037  OPTFILE= Line 1054  OPTFILE=
1054  INCLUDES="-I. $INCLUDES"  INCLUDES="-I. $INCLUDES"
1055  FFLAGS=  FFLAGS=
1056  FOPTIM=  FOPTIM=
1057    FEXTRAFLAGS=
1058    USE_EXTENDED_SRC=
1059    EXTENDED_SRC_FLAG=
1060  CFLAGS=  CFLAGS=
1061  KFLAGS1=  KFLAGS1=
1062  KFLAGS2=  KFLAGS2=
# Line 1047  NOOPTFILES= Line 1067  NOOPTFILES=
1067  NOOPTFLAGS=  NOOPTFLAGS=
1068  MPI=  MPI=
1069  MPIPATH=  MPIPATH=
1070    OMP=
1071    OMPFLAG=
1072    USE_R4=
1073  TS=  TS=
1074  PAPIS=  PAPIS=
1075  PCLS=  PCLS=
# Line 1114  TAMC_EXTRA= Line 1137  TAMC_EXTRA=
1137    
1138  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1139  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1140  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC IEEE USE_R4 TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"
1141    
1142  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1143  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1144  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1145  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1146  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
# Line 1144  EOF Line 1167  EOF
1167    
1168  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1169  gm_local="genmake_local"  gm_local="genmake_local"
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
1170  printf "  getting local config information:  "  printf "  getting local config information:  "
1171  if test -f $gm_local ; then  if test -f $gm_local ; then
1172      echo "using $gm_local"      echo "using $gm_local"
# Line 1161  else Line 1178  else
1178  fi  fi
1179    
1180  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1181  #parse_options  #parse_options
1182  ac_prev=  ac_prev=
1183  for ac_option in "$@" ; do  for ac_option in "$@" ; do
# Line 1294  for ac_option in "$@" ; do Line 1302  for ac_option in "$@" ; do
1302          -noieee | --noieee)          -noieee | --noieee)
1303              IEEE= ;;              IEEE= ;;
1304    
1305            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1306                USE_R4=true ;;
1307    
1308          -ts | --ts)          -ts | --ts)
1309              TS=true ;;              TS=true ;;
1310          -papis | --papis)          -papis | --papis)
# Line 1321  for ac_option in "$@" ; do Line 1332  for ac_option in "$@" ; do
1332              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1333              MPI=true ;;              MPI=true ;;
1334                    
1335  #       -jam | --jam)          -omp | --omp)
1336  #           JAM=1 ;;              OMP=true ;;
1337  #       -nojam | --nojam)          -omp=* | --omp=*)
1338  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1339                OMP=true ;;
1340                    
1341          -ds | --ds)          -ds | --ds)
1342              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 1399  if test ! -d ${ROOTDIR} ; then Line 1411  if test ! -d ${ROOTDIR} ; then
1411  fi  fi
1412    
1413  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1414  if test -f "${ROOTDIR}/doc/tag-index" ; then  version_file="${ROOTDIR}/doc/tag-index"
1415      THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`  if test -f $version_file ; then
1416        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1417    #-  remove ./BUILD_INFO.h file if older than version_file
1418        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1419            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1420            rm -f ./BUILD_INFO.h
1421        fi
1422  fi  fi
1423    
1424  if test "x$MAKEFILE" = x ; then  if test "x$MAKEFILE" = x ; then
# Line 1556  if test ! "x$MPI" = x ; then Line 1574  if test ! "x$MPI" = x ; then
1574        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1575        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1576  fi  fi
1577    if test ! "x$OMP" = x ; then
1578          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1579          FFLAGS="$FFLAGS $OMPFLAG"
1580          F90FLAGS="$F90FLAGS $OMPFLAG"
1581          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1582    fi
1583    
1584    if test ! "x$USE_R4" = x ; then
1585          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1586          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1587    fi
1588    
1589  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1590        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
# Line 1637  if test ! "x$GSL" = x ; then Line 1666  if test ! "x$GSL" = x ; then
1666        INCLUDES="$INCLUDES $GSLINC"        INCLUDES="$INCLUDES $GSLINC"
1667        LIBS="$LIBS $GSLLIB"        LIBS="$LIBS $GSLLIB"
1668  fi  fi
1669    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1670    if test ! "x$USE_EXTENDED_SRC" = x ; then
1671          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1672          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1673    fi
1674    
1675  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1676  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
# Line 1759  fi Line 1793  fi
1793    
1794    
1795  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1796  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1797  for d in $MODS ; do  for d in $MODS ; do
1798      if test ! -d $d ; then      if test ! -d $d ; then
1799          echo          echo
1800          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1801          exit 1          exit 1
1802      else      else
1803          printf " $d"          printf "$d "
1804          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1805          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1806      fi      fi
# Line 2213  fi Line 2247  fi
2247    
2248  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2249  #  compiler.  #  compiler.
2250  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2251      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2252  fi  fi
2253  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2254  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2255      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2256      for j in $list_files ; do      for j in $list_files ; do
2257          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2258      done      done
2259  done  done
2260  if test ! "x"$FS = "x.f" ; then  if test ! "x"$FS = "x.f" ; then
2261      cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f      cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2262      mv -f ad_files_f ad_files      mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2263  fi  fi
2264    
2265  echo  echo
# Line 2283  if test ! -r ".links.tmp/foo" ; then Line 2317  if test ! -r ".links.tmp/foo" ; then
2317      exit 1      exit 1
2318  fi  fi
2319  rm -f .links.tmp/foo  rm -f .links.tmp/foo
2320    
2321    if test "x$OPENAD" != x ; then
2322        OAD_DONT_COMPILE="/dev/null"
2323        OAD_DONT_TRANSFORM="/dev/null"
2324        OAD_KEEP_ORIGINAL="/dev/null"
2325        OAD_CB2M_FILES="/dev/null"
2326        echo "  looking for dontCompile file:  "
2327        for i in "." $MODS ; do
2328            if test -r $i"/dontCompile" ; then
2329                OAD_DONT_COMPILE=$i"/dontCompile"
2330                echo "     found $OAD_DONT_COMPILE"
2331                break
2332            fi
2333        done
2334        echo "  looking for dontTransform file:  "
2335        for i in "." $MODS ; do
2336            if test -r $i"/dontTransform" ; then
2337                OAD_DONT_TRANSFORM=$i"/dontTransform"
2338                echo "     found $OAD_DONT_TRANSFORM"
2339                break
2340            fi
2341        done
2342        echo "  looking for keepOriginal file:  "
2343        for i in "." $MODS ; do
2344            if test -r $i"/keepOriginal" ; then
2345                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2346                echo "     found $OAD_KEEP_ORIGINAL"
2347                break
2348            fi
2349        done
2350        echo "  looking for cb2mFiles:  "
2351        for i in "." $MODS ; do
2352            if test -r $i"/cb2mFiles" ; then
2353                OAD_CB2M_FILES=$i"/cb2mFiles"
2354                echo "     found $OAD_CB2M_FILES"
2355                break
2356            fi
2357        done
2358        echo "   OpenAD exceptions:  "
2359    fi
2360    
2361  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2362  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2363  printf 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2364  printf 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2365  printf 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2366  printf 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2367  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2368    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2369  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2370  for d in $alldirs ; do  for d in $alldirs ; do
2371      deplist=      deplist=
2372      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2373      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2374        if test "x$OPENAD" != x ; then
2375            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2376        fi
2377      for sf in $sfiles ; do      for sf in $sfiles ; do
2378          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2379              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
# Line 2329  for d in $alldirs ; do Line 2408  for d in $alldirs ; do
2408                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2409                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2410                      case $extn in                      case $extn in
2411                          F)                        F)
2412                              echo    " \\"  >> srclist.inc                          echo    " \\"  >> F77srclist.tmp
2413                              printf " $sf" >> srclist.inc                          printf " $sf" >> F77srclist.tmp
2414                              ;;                          if test "x$OPENAD" != x ; then
2415                          F90)                              basename=${sf%%.F}
2416                              echo    " \\"  >> f90srclist.inc                              isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2417                              printf " $sf" >> f90srclist.inc                              if test -z "$isAD" ; then
2418                              ;;                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2419                          c)                                  if test -z "$toBeIgnored" ; then
2420                              echo    " \\"  >> csrclist.inc                                      echo    " \\"  >> nonADF77srclist.tmp
2421                              printf " $sf" >> csrclist.inc                                      printf " $sf" >> nonADF77srclist.tmp
2422                              ;;                                  else
2423                          h)                                      echo "    not to be compiled   :  $sf"
2424                              echo    " \\"  >> hlist.inc                                  fi
2425                              printf " $sf" >> hlist.inc                              else # file is initially listed as an AD file we want to exclude it
2426                              ;;                                   # or we want to retain the untransformed version
2427                          flow)                                  notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2428                              echo    " \\"  >> ad_flow_files.inc                                  untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2429                              printf " $sf" >> ad_flow_files.inc                                  if test -n "$notToBeTransformed"; then
2430                              ;;                                      echo "    not to be transformed:  $sf"
2431                      esac                                  fi
2432                  fi                                  if test -n "$untransformedVersionToBeKept" ; then
2433                                        echo "    original to be kept  :  $sf"
2434                                    fi    
2435                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2436                                        echo    " \\"  >> nonADF77srclist.tmp
2437                                        printf " $sf" >> nonADF77srclist.tmp
2438                                    fi
2439                                fi
2440                            fi
2441                            ;;
2442                        F90)
2443                            echo    " \\"  >> F90srclist.tmp
2444                            printf " $sf" >> F90srclist.tmp
2445                            ;;
2446                        c)
2447                            echo    " \\"  >> csrclist.tmp
2448                            printf " $sf" >> csrclist.tmp
2449                            ;;
2450                        h)
2451                            echo    " \\"  >> hsrclist.tmp
2452                            printf " $sf" >> hsrclist.tmp
2453                            ;;
2454                        flow)
2455                            echo    " \\"  >> ad_flow_files.tmp
2456                            printf " $sf" >> ad_flow_files.tmp
2457                            ;;
2458                       esac
2459                    fi
2460              fi              fi
2461          fi          fi
2462      done      done
2463      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2464          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2465            echo "" >> srclinks.tmp
2466          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2467          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2468          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2469    # This may happen when make thinks that a header file has to be "remade"
2470    # because a module it depends on has changed.  In this case we do nothing.
2471            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2472          fi
2473      fi      fi
2474  done  done
2475  rm -rf .links.tmp  rm -rf .links.tmp
2476  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2477  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2478  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2479  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2480  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2481    echo "" >> ad_flow_files.tmp
2482    
2483    CMDLINE=$0
2484    for xx in "$@" ; do nw=`echo $xx | wc -w`
2485        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2486                            else CMDLINE="$CMDLINE '$xx'" ; fi
2487    done
2488    
2489  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2490      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
# Line 2377  echo "#    $MACHINE" >> $MAKEFILE Line 2495  echo "#    $MACHINE" >> $MAKEFILE
2495  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2496  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2497  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2498  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2499  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2500  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2501    
# Line 2434  else Line 2552  else
2552      echo "EMBEDDED_FILES = " >>$MAKEFILE      echo "EMBEDDED_FILES = " >>$MAKEFILE
2553  fi  fi
2554    
 #  Note: figure out some way to add Hyades JAM libraries here  
2555  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2556  # Unix ln (link)  # Unix ln (link)
2557  LN = ${LN}  LN = ${LN}
# Line 2461  INCLUDES = ${INCLUDES} Line 2578  INCLUDES = ${INCLUDES}
2578  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2579  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2580  # Optim./debug for FC  # Optim./debug for FC
2581  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2582  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2583  # Optim./debug for FC  # Optim./debug for FC
2584  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2585  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2586    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2587  # Flags for CC  # Flags for CC
2588  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2589  # Files that should not be optimized  # Files that should not be optimized
# Line 2478  MAKEFILE=${MAKEFILE} Line 2596  MAKEFILE=${MAKEFILE}
2596    
2597  EOF  EOF
2598    
2599  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2600  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2601  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2602  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2603  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2604    cat ad_flow_files.tmp   >> $MAKEFILE
2605    
2606    rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2607    
2608  echo >> $MAKEFILE  echo >> $MAKEFILE
2609  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  
2610  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE  # add definitions for preprocessed sources
2611  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  # and note that not all systems allow case sensitive extensions
2612    # hence the $FS and $FS90 here.
2613    # for fixed format f90 files we use ff90 or FF90 resp
2614    # but these are not expected to be the original source files
2615    
2616    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2617    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2618    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2619    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2620  echo >> $MAKEFILE  echo >> $MAKEFILE
2621  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2622  echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
 rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
 rm -f ad_flow_files.inc  
2623    
2624  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2625    
2626  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2627  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2628          @echo Creating \$@ ...          @echo Creating \$@ ...
2629          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2630  depend:  depend:
2631          @make links          @make links
2632          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2633          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2634          -rm -f makedepend.out          -rm -f makedepend.out
2635    
# Line 2511  libmitgcmuv.a: \$(OBJFILES) Line 2639  libmitgcmuv.a: \$(OBJFILES)
2639          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
2640          ar d   libmitgcmuv.a main.o          ar d   libmitgcmuv.a main.o
2641    
2642  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2643    
2644  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2645    
2646  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2647          @printf 'running ... '          @printf 'running ... '
# Line 2522  output.txt: \$(EXECUTABLE) Line 2650  output.txt: \$(EXECUTABLE)
2650  clean:  clean:
2651          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2652          -rm -rf *.o          -rm -rf *.o
2653          -rm -rf *.$FS          -rm -rf *.$FS *.flowdir
2654            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2655  Clean:  Clean:
2656          @make clean          @make clean
2657          @make cleanlinks          @make cleanlinks
2658          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES)
2659          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f genmake_state genmake_*optfile genmake_warnings genmake_errors
2660            -rm -f make.log run.log f90mkdepend.log *.bak
2661            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2662  CLEAN:  CLEAN:
2663          @make Clean          @make Clean
2664          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2665          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2666          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2667          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2668            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2669          -rm -rf mnc_test_*          -rm -rf mnc_test_*
2670    
2671  #eh3 Makefile: makefile  #eh3 Makefile: makefile
# Line 2542  makefile: Line 2674  makefile:
2674  cleanlinks:  cleanlinks:
2675          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2676    
2677  # Special targets (SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2678  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2679          @echo Creating \$@ ...          @echo Creating \$@ ...
2680          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
# Line 2567  if test "x$EMBED_SRC" = xt ; then Line 2699  if test "x$EMBED_SRC" = xt ; then
2699    
2700  decode_files.o : EMBEDDED_FILES.h  decode_files.o : EMBEDDED_FILES.h
2701    
2702  ##  \$(F77FILES)  ##  \$(F77_PP_SRC_FILES)
2703  all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile  all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2704          @echo Creating \$@ ...          @echo Creating \$@ ...
2705          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2706          -rm -f all_fF.tar.gz          -rm -f all_fF.tar.gz
2707          -gzip all_fF.tar          -gzip all_fF.tar
2708    
# Line 2592  cat >>$MAKEFILE <<EOF Line 2724  cat >>$MAKEFILE <<EOF
2724          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2725  .$FS.o:  .$FS.o:
2726          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2727  .F90.o:    .F90.$FS90:
2728            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2729    .FF90.f$FS90:
2730            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2731    .$FS90.o:
2732          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2733    .f$FS90.o:
2734            cp \$< \$(basename  \$<).f90
2735            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2736  .c.o:  .c.o:
2737          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2738    .flow.flowdir:
2739            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2740    
2741  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2742  .F.p:  .F.p:
# Line 2603  cat >>$MAKEFILE <<EOF Line 2744  cat >>$MAKEFILE <<EOF
2744  .p.$FS:  .p.$FS:
2745          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2746    
2747    EOF
2748    
2749  #=========================================  #=========================================
2750  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2751    #===  for TAMC/TAF  ======================
2752    
2753    if test "x$OPENAD" = x ; then
2754    
2755    cat >>$MAKEFILE <<EOF
2756    
2757  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2758  TAF            = ${TAF}  TAF            = ${TAF}
# Line 2628  done Line 2776  done
2776  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2777  echo >> $MAKEFILE  echo >> $MAKEFILE
2778  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2779  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2780  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2781      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2782      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2783  done  done
2784  echo >> $MAKEFILE  echo >> $MAKEFILE
2785  rm -f ad_files  rm -f adSrcFiles.tmp
2786    
2787  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2788    
# Line 2643  adall: \$(EXE_AD) Line 2791  adall: \$(EXE_AD)
2791  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
2792  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
2793    
2794  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
2795          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2796          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2797          -rm -f ad_config.template          -rm -f ad_config.template
2798          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2799          @make \$(AD_FLOW_FILES)          @make \$(FLOFILES)
2800          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS          cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
2801    
2802  ad_taf_output.$FS: ad_input_code.$FS  ad_taf_output.$FS: ad_input_code.$FS
2803          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2804            ls -l ad_input_code_ad.$FS
2805          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2806    
2807  adtafonly:  adtafonly:
2808          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2809            ls -l ad_input_code_ad.$FS
2810          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2811    
2812  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
# Line 2680  ftlall: ftl_taf Line 2830  ftlall: ftl_taf
2830  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
2831  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
2832    
2833  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2834          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2835          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2836          -rm -f ftl_config.template          -rm -f ftl_config.template
2837          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2838          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2839          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2840    
2841  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_taf_output.$FS: ftl_input_code.$FS
2842          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2843            ls -l ftl_input_code_ftl.$FS
2844          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2845    
2846  ftltafonly:  ftltafonly:
2847          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2848            ls -l ftl_input_code_ftl.$FS
2849          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2850    
2851  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
# Line 2731  svd_touch: Line 2883  svd_touch:
2883          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2884          -rm -f ftl_config.template          -rm -f ftl_config.template
2885    
2886  #=========================================  EOF
2887    
2888    fi
2889    
2890    #===  for OpenAD  ========================
2891    
2892    if test "x$OPENAD" != x ; then
2893    
2894    # ============ begin OpenAD specific section ==============
2895    
2896    cat >>$MAKEFILE <<EOF
2897    
2898    # all the source files linked from the various locations:
2899    ALL_LINKED_FILES= \
2900    \$(F77_SRC_FILES) \
2901    \$(C_SRC_FILES) \
2902    \$(H_SRC_FILES) \
2903    \$(F90_SRC_FILES) \
2904    \$(SPECIAL_FILES)
2905    
2906    ifndef OPENADROOT
2907      \$(error "Error:  environment variable OPENADROOT not defined!")
2908    endif
2909    
2910    ifndef XAIFSCHEMAROOT
2911      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2912    endif
2913    
2914    ifndef XAIFBOOSTERROOT
2915      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2916    endif
2917    
2918  EOF  EOF
2919    
2920    echo "  Add the source list for common block to module conversion "
2921    echo >> $MAKEFILE
2922    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2923    for i in `cat ${OAD_CB2M_FILES}` ; do
2924      echo    " \\" >> $MAKEFILE
2925      printf " $i" >> $MAKEFILE
2926    done
2927    echo >> $MAKEFILE
2928    
2929    echo "  Add the source list for AD code generation"
2930    echo >> $MAKEFILE
2931    printf "AD_FILES = " >> $MAKEFILE
2932    for i in `cat ${OAD_CB2M_FILES}` ; do
2933      echo    " \\" >> $MAKEFILE
2934      printf " ${i}_mod.f$FS90" >> $MAKEFILE
2935    done
2936    AD_FILES=`cat adSrcFiles.tmp`
2937    for i in $AD_FILES ; do
2938      basename=${i%%.f}
2939      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
2940      if test -z "$toBeIgnored" ; then
2941        echo    " \\" >> $MAKEFILE
2942        printf " $i" >> $MAKEFILE
2943      fi
2944    done
2945    echo >> $MAKEFILE
2946    rm -f adSrcFiles.tmp
2947    
2948    cat >>$MAKEFILE <<EOF
2949    
2950    adAll: \$(EXE_AD)
2951    .PHONY: adAll
2952    
2953    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
2954    
2955    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
2956    
2957    .PHONY: adDepend
2958    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
2959            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2960            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2961            -rm -f makedepend.out
2962    
2963    OPENAD_SUPPORT_F90_SRC_FILES = \
2964    w2f__types.F90 \
2965    OAD_active.F90 \
2966    OAD_cp.F90 \
2967    OAD_rev.F90 \
2968    OAD_tape.F90        
2969    
2970    OPENAD_SUPPORT_C_SRC_FILES = \
2971    iaddr.c \
2972    timeRatio.c
2973    
2974    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
2975            cat \$^ > \$@
2976    
2977    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
2978            cat \$^ > \$@
2979    
2980    f95_test.out: f95_test_mods.f90 f95_test.f90
2981            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
2982            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
2983    
2984    # the file included below is created by the
2985    # postProcessor and its inclusion sets the
2986    # variable POSTPROCESSEDFILES
2987    # used below. Because the file is made during
2988    # make it won't be read until the second (recursive)
2989    # invocation in the rule below
2990    -include postProcess.make
2991    
2992    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)
2993    
2994    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
2995    
2996    postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)
2997    ifeq (\$(MAKELEVEL),0)
2998            \$(MAKE) adAll
2999    else
3000            touch \$@
3001    endif
3002    
3003    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)
3004    ifeq (\$(MAKELEVEL),1)
3005            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3006    else
3007            touch \$@
3008    endif
3009    
3010    # makefile debug rule
3011    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3012    .PHONY: openad
3013    
3014    # create the module files
3015    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3016            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3017    
3018    # create the header files
3019    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3020            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3021    
3022    # change everybody else to use the new module files:
3023    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3024            ../OAD_support/cb2mUseModules.bash $< ${MPI}
3025    
3026    # makefile debug rule
3027    small_f: \$(CB2M_F90_PP_SRC_FILES)
3028    .PHONY: small_f
3029    
3030    ad_output.txt: \$(EXE_AD)
3031            @printf 'linking data files ... '
3032            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3033            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3034            @printf 'running ... '
3035            @./\$(EXE_AD) > \$@
3036    
3037    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3038    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3039            cat \$^ > \$@
3040    
3041    # strip all comments and blanks to reduce
3042    # the file size in order to reduce perl's memory requirements
3043    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3044            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3045    
3046    # mfef90 preprocessing
3047    # expand statement functions
3048    # expose mfef90 specific substring handling
3049    # add the w2f__types module
3050    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3051            ./mfef90 -r8 -z -F -N132 \$<
3052            mv \$<.B \$(basename \$<).B
3053            ./whirl2f -openad \$(basename \$<).B
3054            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3055    
3056    # canonicalizer
3057    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3058            ./preProcess.py --timing --r8 -H -S \$< -o \$@
3059    
3060    # F -> WHIRL
3061    # note that the canonicalized version cuts off at col 72
3062    # doing this also for string constants which is ok as long
3063    # as we are in fixed mode and cut of exactly there.
3064    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3065    # characters respectively.
3066    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3067            ./mfef90 -r8 -z -F \$<
3068            mv \$<.B \$@
3069    
3070    # WHIRL -> XAIF
3071    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3072            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3073    
3074    # XAIF -> XAIF'
3075    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3076            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3077    
3078    # XAIF' -> WHIRL'
3079    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3080            ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<
3081    
3082    # WHIRL' -> F'
3083    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3084            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3085    
3086    # insert template directives
3087    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3088            ../OAD_support/insertTemplateDir.bash \$< \$@
3089    
3090    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3091    # postprocess F'
3092    postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3093            # the target is a placeholder to signal execution of the rule
3094            touch \$@
3095            # this step also creates the file postProcess.make but we cannot
3096            # name it as the target or else make will try to remake it for
3097            # the include directive above for any rule, e.g. make clean
3098            ./postProcess.py --progress --timing --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<
3099    
3100    # setup some links
3101    %.xsd:
3102            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3103    
3104    mfef90:
3105            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3106    
3107    # link the support files:
3108    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3109            \$(LN) ../OAD_support/\$@ .
3110    
3111    whirl2xaif xaif2whirl:
3112            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3113    
3114    preProcess.py postProcess.py:
3115            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3116    
3117    whirl2f whirl2f_be:
3118            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3119    
3120    oadDriver:
3121            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3122    
3123    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)
3124    
3125    # ============ end OpenAD specific section ==============
3126    
3127    EOF
3128    
3129    fi
3130    
3131    #=========================================
3132    
3133  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3134      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3135  fi  fi

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