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revision 1.20 by heimbach, Wed Oct 22 15:27:07 2003 UTC revision 1.66 by edhill, Mon Feb 23 21:51:32 2004 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99
17      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99
18      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99
19          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99
20          exit 99  }
21      fi  
22      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1  # Search for particular CPP #cmds associated with MPI
23      RETVAL=$?  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
24      if test "x${RETVAL}" = x0 ; then  test_for_mpi_in_cpp_eeoptions() {
25          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"      cpp_options=$1
26          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99
27      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99
28      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99
29        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99
30    }
31    
32    # Search for particular string in a file. Return 1 if detected, 0 if not
33    # usage: test_for_string_in_file file string
34    test_for_string_in_file() {
35        file=$1
36        strng=$2
37        grep -i "$strng" $file > /dev/null 2>&1
38      RETVAL=$?      RETVAL=$?
39      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
40          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          echo -n "Error: In $file there is an illegal line: "
41          exit 99          grep -i "$strng" $file
42            return 1
43      fi      fi
44      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
45  }  }
46    
47  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
# Line 72  find_possible_configs()  { Line 77  find_possible_configs()  {
77    
78      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
79      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
80      PLATFORM=`echo $tmp2 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
81        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
82        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
83        PLATFORM=$tmp2
84      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
85      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
86            
87      echo "test" > test      echo "test" > test
88      ln -s ./test link      ln -s ./test link
# Line 103  find_possible_configs()  { Line 100  find_possible_configs()  {
100          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
101      fi      fi
102    
103        # makedepend is not always available
104        if test "x${MAKEDEPEND}" = x ; then
105          which makedepend >& /dev/null
106          RETVAL=$?
107          if test "x${RETVAL}" = x1 ; then
108             echo "    makedepend was not found. Using xmakedpend instead."
109             MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
110          fi
111        fi
112    
113      # look for possible fortran compilers      # look for possible fortran compilers
114      tmp="$MITGCM_FC $FC g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
115      p_FC=      p_FC=
116      for c in $tmp ; do      for c in $tmp ; do
117          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 121  EOF Line 128  EOF
128              p_FC="$p_FC $c"              p_FC="$p_FC $c"
129          fi          fi
130      done      done
131        rm -f ./hello.f ./hello
132      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
133          cat 1>&2 <<EOF          cat 1>&2 <<EOF
134    
# Line 204  get_pdepend_list()  { Line 212  get_pdepend_list()  {
212      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
213          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
214          > ./.pd_tmp          > ./.pd_tmp
215      source ./.pd_tmp      . ./.pd_tmp
216      rm -f ./.pd_tmp      rm -f ./.pd_tmp
217    
218      echo -n "PNAME = "${}      echo -n "PNAME = "${}
# Line 213  get_pdepend_list()  { Line 221  get_pdepend_list()  {
221    
222  #  Explain usage  #  Explain usage
223  usage()  {  usage()  {
224      echo  cat <<EOF
225      echo "Usage: "$0" [OPTIONS]"  
226      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
227      echo    where [OPTIONS] can be:
228      echo "    -help | --help | -h | --h"  
229      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
230      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
231      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
232      echo "    -pdepend NAME | --pdepend NAME"      -nooptfile | --nooptfile
233      echo "      -pdepend=NAME | --pdepend=NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
234      echo "    -pdefault NAME | --pdefault NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
235      echo "      -pdefault=NAME | --pdefault=NAME"            Use "NAME" as the optfile.  By default, an attempt will be
236      echo "    -make NAME | -m NAME"            made to find an appropriate "standard" optfile in the
237      echo "      --make=NAME | -m=NAME"            tools/build_options/ directory.
238      echo "    -makefile NAME | -mf NAME"  
239      echo "      --makefile=NAME | -mf=NAME"      -pdepend NAME | --pdepend NAME
240      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"        -pdepend=NAME | --pdepend=NAME
241      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            Get package dependency information from "NAME".
242      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"  
243      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"      -pdefault NAME | --pdefault NAME
244      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"        -pdefault=NAME | --pdefault=NAME
245      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"            Get the default package list from "NAME".
246      echo "    -disable NAME | --disable NAME"  
247      echo "      -disable=NAME | --disable=NAME"      -make NAME | -m NAME
248      echo "    -enable NAME | --enable NAME"        --make=NAME | -m=NAME
249      echo "      -enable=NAME | --enable=NAME"            Use "NAME" for the MAKE program. The default is "make" but
250      echo "    -standarddirs NAME | --standarddirs NAME"            many platforms, "gmake" is the preferred choice.
251      echo "      -standarddirs=NAME | --standarddirs=NAME"  
252      echo "    -noopt NAME | --noopt NAME"      -makefile NAME | -mf NAME
253      echo "      -noopt=NAME | --noopt=NAME"        --makefile=NAME | -mf=NAME
254  #    echo "    -cpp NAME | --cpp NAME"            Call the makefile "NAME".  The default is "Makefile".
255  #    echo "      -cpp=NAME | --cpp=NAME"  
256      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
257      echo "      -fc=NAME | --fc=NAME"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
258      echo "    -[no]ieee | --[no]ieee"            Specify the location of the MITgcm ROOTDIR as "NAME".
259      echo "    -[no]mpi | --[no]mpi"            By default, genamke will try to find the location by
260      echo "    -[no]jam | --[no]jam"            looking in parent directories (up to the 5th parent).
261      echo  
262      echo "  and NAME is a string such as:"      -mods NAME | --mods NAME | -mo NAME | --mo NAME
263      echo        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
264      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"            Here, "NAME" specifies a list of directories that are
265      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"            used for additional source code.  Files found in the
266      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"            "mods list" are given preference over files of the same
267      echo            name found elsewhere.
268      echo "  which, depending upon your shell, may need to be single-quoted"  
269      echo "  if it contains spaces, dashes, or other special characters."      -disable NAME | --disable NAME
270          -disable=NAME | --disable=NAME
271              Here "NAME" specifies a list of packages that we don't
272              want to use.  If this violates package dependencies,
273              genamke will exit with an error message.
274    
275        -enable NAME | --enable NAME
276          -enable=NAME | --enable=NAME
277              Here "NAME" specifies a list of packages that we wish
278              to specifically enable.  If this violates package
279              dependencies, genamke will exit with an error message.
280    
281        -standarddirs NAME | --standarddirs NAME
282          -standarddirs=NAME | --standarddirs=NAME
283              Here, "NAME" specifies a list of directories to be
284              used as the "standard" code.
285    
286        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
287          -fc=NAME | --fc=NAME
288              Use "NAME" as the fortran compiler.  By default, genmake
289              will search for a working compiler by trying a list of
290              "usual suspects" such as g77, f77, etc.
291    
292        -[no]ieee | --[no]ieee
293              Do or don't use IEEE numerics.  Note that this option
294              *only* works if it is supported by the OPTFILE that
295              is being used.
296    
297      While it is most often a single word, the "NAME" variables specified
298      above can in many cases be a space-delimited string such as:
299    
300        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
301        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
302        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
303    
304      which, depending upon your shell, may need to be single-quoted.
305    
306      For more detailed genmake documentation, please see:
307    
308        http://mitgcm.org/devel_HOWTO/
309    
310    EOF
311    
312      exit 1      exit 1
313  }  }
314    
315  #eh3 # This is the generic configuration.  #  Build a CPP macro to automate calling C routines from FORTRAN
316  #eh3 set LN         = ( 'ln -s' )  get_fortran_c_namemangling()  {
317  #eh3 set CPP        = ( '/lib/cpp -P' )      default_nm="#define FC_NAMEMANGLE(X) X ## _"
318  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      
319  #eh3 set KPP        = (  )      cat > genmake_test.c <<EOF
320  #eh3 set FC         = ( 'f77' )  void tcall( char * string ) { tsub( string ); }
321  #eh3 set LINK       = $FC  EOF
322  #eh3 set MAKEDEPEND = ( 'makedepend' )      $MAKE genmake_test.o >> genmake_warnings 2>&1
323  #eh3 set INCLUDES   = ( -I. )      RETVAL=$?
324  #eh3 set FFLAGS     = (  )      if test "x$RETVAL" != x0 ; then
325  #eh3 set FOPTIM     = (  )          FC_NAMEMANGLE=$default_nm
326  #eh3 set CFLAGS     = (  )          cat <<EOF>> genmake_errors
327  #eh3 set KFLAGS1    = (  )  
328  #eh3 set KFLAGS2    = (  )  WARNING: C test compile fails
329  #eh3 set LIBS       = (  )  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
330  #eh3 set KPPFILES   = (  )  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
331  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )  EOF
332  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )          return 1
333        fi
334        c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
335        RETVAL=$?
336        if test "x$RETVAL" != x0 ; then
337            FC_NAMEMANGLE=$default_nm
338            cat <<EOF>> genmake_warnings
339    
340    WARNING: The "nm" command failed.
341    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
342    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
343    EOF
344            return 1
345        fi
346        cat > genmake_tcomp.f <<EOF
347          subroutine tcall( string )
348          character*(*) string
349          call tsub( string )
350          end
351    EOF
352        $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1
353        RETVAL=$?
354        if test "x$RETVAL" != x0 ; then
355            FC_NAMEMANGLE=$default_nm
356            cat <<EOF>> genmake_warnings
357    
358    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
359    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
360    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
361    EOF
362            return 1
363        fi
364        f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
365        RETVAL=$?
366        if test "x$RETVAL" != x0 ; then
367            FC_NAMEMANGLE=$default_nm
368            cat <<EOF>> genmake_warnings
369    
370    WARNING: The "nm" command failed.
371    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
372    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
373    EOF
374            return 1
375        fi
376    
377        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
378        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
379        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
380        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
381    
382        nmangle="X"
383        if test "x$c_a" != "x$f_a" ; then
384            comm="echo x$f_a | sed -e 's|x$c_a||'"
385            a=`eval $comm`
386            nmangle="$a ## $nmangle"
387        fi
388        if test "x$c_b" != "x$f_b" ; then
389            comm="echo x$f_b | sed -e 's|x$c_b||'"
390            b=`eval $comm`
391            nmangle="$nmangle ## $b"
392        fi
393    
394        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
395    
396        #  cleanup the testing files
397        rm -f genmake_tcomp.* genmake_test.*
398    }
399    
400    
401    check_HAVE_CLOC()  {
402        get_fortran_c_namemangling
403        cat <<EOF > genmake_tc_1.c
404    $FC_NAMEMANGLE
405    #include <stdio.h>
406    #include <stdlib.h>
407    #include <unistd.h>
408    #include <assert.h>
409    #include <sys/time.h>
410    void FC_NAMEMANGLE(cloc) ( double *curtim )
411    {
412     struct timeval tv1;
413     gettimeofday(&tv1 , (void *)NULL );
414     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
415     *curtim = *curtim/1.E6;
416    }
417    EOF
418        make genmake_tc_1.o >> genmake_tc.log 2>&1
419        RET_C=$?
420        cat <<EOF > genmake_tc_2.f
421          program hello
422          Real*8 wtime
423          external cloc
424          call cloc(wtime)
425          print *," HELLO WORLD", wtime
426          end program hello
427    EOF
428        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
429        RET_F=$?
430        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
431        RETVAL=$?
432        if test "x$RETVAL" = x0 ; then
433            HAVE_CLOC=t
434            DEFINES="$DEFINES -DHAVE_CLOC"
435        fi
436        rm -f genmake_tc*
437    }
438    
439    
440    check_netcdf_libs()  {
441        cat <<EOF > genmake_tnc.F
442          program fgennc
443    #include "netcdf.inc"
444          integer iret, ncid, xid
445          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
446          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
447          iret = nf_def_dim(ncid, 'X', 11, xid)
448          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
449          iret = nf_close(ncid)
450          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
451          end
452    EOF
453        $CPP genmake_tnc.F > genmake_tnc.f  \
454            &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1
455        RET_COMPILE=$?
456        test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
457        RETVAL=$?
458        if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
459            HAVE_NETCDF=t
460        else
461            # try again with "-lnetcdf" added to the libs
462            $CPP genmake_tnc.F > genmake_tnc.f  \
463                &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \
464                $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1
465            RET_COMPILE=$?
466            test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
467            RETVAL=$?
468            if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
469                LIBS="$LIBS -lnetcdf"
470                HAVE_NETCDF=t
471            else
472                cat genmake_tnc.log >> genmake_warnings
473            fi
474        fi
475        rm -f genmake_tnc*
476    }
477    
478    
479  #  Set defaults here  #  Set defaults here
480  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 289  LN= Line 484  LN=
484  S64=  S64=
485  KPP=  KPP=
486  FC=  FC=
487    CPP=
488  LINK=  LINK=
489  DEFINES="-DWORDLENGTH=4"  # DEFINES="-DWORDLENGTH=4"
490    DEFINES=
491  PACKAGES=  PACKAGES=
492  ENABLE=  ENABLE=
493  DISABLE=  DISABLE=
# Line 311  KPPFILES= Line 508  KPPFILES=
508  NOOPTFILES=  NOOPTFILES=
509  NOOPTFLAGS=  NOOPTFLAGS=
510    
511    # DEFINES checked by test compilation
512    HAVE_SYSTEM=
513    HAVE_FDATE=
514    FC_NAMEMANGLE=
515    HAVE_CLOC=
516    HAVE_NETCDF=
517    
518  MODS=  MODS=
519  TOOLSDIR=  TOOLSDIR=
520  SOURCEDIRS=  SOURCEDIRS=
521  INCLUDEDIRS=  INCLUDEDIRS=
522  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
523    
524  PWD=`pwd`  PWD=`pwd`
525  MAKE=make  MAKE=make
# Line 348  TAMC_EXTRA= Line 552  TAMC_EXTRA=
552    
553    
554  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
555  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
556  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"
557    
558  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
559  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
560  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
561  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"
562  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
563    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"
564    
565  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
566  gm_s7="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
567  gm_s8="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
568  gm_s9="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA"
569    
570  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8 $gm_s9"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
571    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
572    
573    cat <<EOF
574    
575    GENMAKE :
576    
577    A program for GENerating MAKEfiles for the MITgcm project.  For a
578    quick list of options, use "genmake -h" or for more detail see:
579    
580      http://mitgcm.org/devel_HOWTO/
581    
582    EOF
583    
 echo  
584  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
585  gm_local="genmake_local"  gm_local="genmake_local"
586  for i in . $MODS ; do  for i in . $MODS ; do
587      if test -r $i/$gm_local ; then      if test -r $i/$gm_local ; then
588          source $i/$gm_local          . $i/$gm_local
589          break          break
590      fi      fi
591  done  done
592  echo -n "  getting local config information:  "  echo -n "  getting local config information:  "
593  if test -e $gm_local ; then  if test -e $gm_local ; then
594      echo "using $gm_local"      echo "using $gm_local"
595      source $gm_local      . $gm_local
596      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
597      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
598  else  else
# Line 419  for ac_option ; do Line 634  for ac_option ; do
634          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
635              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
636                    
637          -adoptfile | --adoptfile | -ad | --ad)          -adoptfile | --adoptfile | -adof | --adof)
638              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
639          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
640              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
# Line 444  for ac_option ; do Line 659  for ac_option ; do
659          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
660              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
661                    
662          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
663              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
664          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
665              PLATFORM=$ac_optarg ;;              echo
666                usage
667                ;;
668                    
669          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
670              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 474  for ac_option ; do Line 691  for ac_option ; do
691          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
692              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
693    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
694  #           -cpp | --cpp)  #           -cpp | --cpp)
695  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
696  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
# Line 494  for ac_option ; do Line 706  for ac_option ; do
706          -noieee | --noieee)          -noieee | --noieee)
707              IEEE= ;;              IEEE= ;;
708                    
709          -mpi | --mpi)  #       -jam | --jam)
710              MPI=true ;;  #           JAM=1 ;;
711          -nompi | --nompi)  #       -nojam | --nojam)
712              MPI= ;;  #           JAM=0 ;;
           
         -jam | --jam)  
             JAM=1 ;;  
         -nojam | --nojam)  
             JAM=0 ;;  
713                    
714          -ds | --ds)          -ds | --ds)
715              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 581  fi Line 788  fi
788  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
789      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
790          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
791          source "$OPTFILE"          . "$OPTFILE"
792          RETVAL=$?          RETVAL=$?
793          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
794              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""
# Line 608  fi Line 815  fi
815  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
816      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
817          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
818          source "$AD_OPTFILE"          . "$AD_OPTFILE"
819          RETVAL=$?          RETVAL=$?
820          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
821              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
# Line 624  if test "x${AD_OPTFILE}" != xNONE ; then Line 831  if test "x${AD_OPTFILE}" != xNONE ; then
831      fi      fi
832  fi  fi
833    
834  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
835  #  and abort!  #  either set defaults or complain and abort!
836  if test "x$FC" = x ; then  if test "x$FC" = x ; then
837      cat <<EOF 1>&2      cat <<EOF 1>&2
838    
# Line 639  fi Line 846  fi
846  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
847      LINK=$FC      LINK=$FC
848  fi  fi
849    if test "x$MAKE" = x ; then
850        MAKE="make"
851    fi
852  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
853      CPP="cpp"      CPP=cpp
854  fi  fi
855    #EH3 === UGLY ===
856    #  The following an ugly little hack to check for $CPP in /lib/ and it
857    #  should eventually be replaced with a more general function that
858    #  searches a combo of the user's path and a list of "usual suspects"
859    #  to find the correct location for binaries such as $CPP.
860    for i in " " "/lib/" ; do
861        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
862    done
863    #EH3 === UGLY ===
864  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
865  RETVAL=$?  RETVAL=$?
866  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 651  Error: C pre-processor "$CPP" failed the Line 870  Error: C pre-processor "$CPP" failed the
870    
871    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
872    2) the "./genmake_local" file    2) the "./genmake_local" file
873      3) with the CPP environment variable
874    
875  EOF  EOF
876      exit 1      exit 1
# Line 660  fi Line 880  fi
880  if test "x$MAKEDEPEND" = x ; then  if test "x$MAKEDEPEND" = x ; then
881      MAKEDEPEND=makedepend      MAKEDEPEND=makedepend
882  fi  fi
883    if test "x$LN" = x ; then
884        LN="ln -s"
885    fi
886    echo "test" > genmake_test_ln
887    $LN genmake_test_ln genmake_tlink
888    RETVAL=$?
889    if test "x$RETVAL" != x0 ; then
890        cat <<EOF 1>&2
891    
892    Error: The command "ln -s" failed -- please specify a working soft-link
893      command in the optfile.
894    
895    EOF
896        exit 1
897    fi
898    rm -f genmake_test_ln genmake_tlink
899    
900    
901    printf "\n===  Checking system libraries  ===\n"
902    echo -n "  Do we have the system() command using $FC...  "
903    cat > genmake_tcomp.f <<EOF
904          program hello
905          call system('echo hi')
906          end
907    EOF
908    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
909    RETVAL=$?
910    if test "x$RETVAL" = x0 ; then
911        HAVE_SYSTEM=t
912        DEFINES="$DEFINES -DHAVE_SYSTEM"
913        echo "yes"
914    else
915        HAVE_SYSTEM=
916        echo "no"
917    fi
918    rm -f genmake_tcomp*
919    
920    echo -n "  Do we have the fdate() command using $FC...  "
921    cat > genmake_tcomp.f <<EOF
922          program hello
923          CHARACTER(128) string
924          string = ' '
925          call fdate( string )
926          print *, string
927          end
928    EOF
929    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
930    RETVAL=$?
931    if test "x$RETVAL" = x0 ; then
932        HAVE_FDATE=t
933        DEFINES="$DEFINES -DHAVE_FDATE"
934        echo "yes"
935    else
936        HAVE_FDATE=
937        echo "no"
938    fi
939    rm -f genmake_tcomp*
940    
941    echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
942    check_HAVE_CLOC
943    if test "x$HAVE_CLOC" != x ; then
944        echo "yes"
945    else
946        echo "no"
947    fi
948    rm -f genmake_t*
949    
950    echo -n "  Can we create NetCDF-enabled binaries...  "
951    check_netcdf_libs
952    if test "x$HAVE_NETCDF" != x ; then
953        echo "yes"
954    else
955        echo "no"
956    fi
957    
958    
959  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
960  echo -n "  Adding MODS directories:  "  echo -n "  Adding MODS directories:  "
# Line 699  if test "x${TOOLSDIR}" = x ; then Line 994  if test "x${TOOLSDIR}" = x ; then
994      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
995  fi  fi
996  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
997      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
998      exit 1      exit 1
999  fi  fi
1000  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1001      S64='$(TOOLSDIR)/set64bitConst.sh'      S64='$(TOOLSDIR)/set64bitConst.sh'
1002  fi  fi
1003    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1004    
1005  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1006    
# Line 713  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 1009  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1009  #  they appear as regular source code  #  they appear as regular source code
1010  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1011      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1012      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
1013      RETVAL=$?      RETVAL=$?
1014      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1015          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1016      else      else
1017          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1018          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1019          exit 1          exit 1
1020      fi      fi
1021  fi  fi
1022    
1023    #same for exch2
1024    if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then
1025        echo "  Making source files in exch2 from  templates"
1026        ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1
1027        RETVAL=$?
1028        if test "x${RETVAL}" = x0 ; then
1029            rm -f make_exch2.errors
1030        else
1031            echo "Error: problem encountered while building source files in exch2:"
1032            cat make_exch2.errors 1>&2
1033            exit 1
1034        fi
1035    fi
1036    
1037  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1038  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1039      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 750  if test ! "x${RETVAL}" = x0 ; then Line 1060  if test ! "x${RETVAL}" = x0 ; then
1060      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
1061      exit 1      exit 1
1062  fi  fi
1063  source ./.pd_tmp  . ./.pd_tmp
1064  rm -f ./.pd_tmp  rm -f ./.pd_tmp
1065    
1066  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1067  #  file should eventually be added so that, for convenience, one can  #  file should eventually be added so that, for convenience, one can
1068  #  specify groups of packages using names like "ocean" and "atmosphere".  #  specify groups of packages using names like "ocean" and "atmosphere".
1069  echo  -n "  checking default package list:  "  echo "  checking default package list:  "
1070  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1071      for i in "." $MODS ; do      for i in "." $MODS ; do
1072          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
# Line 769  if test "x${PDEFAULT}" = x ; then Line 1079  if test "x${PDEFAULT}" = x ; then
1079      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1080  fi  fi
1081  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1082      echo "default packages file disabled"      echo "    default packages file disabled"
1083  else  else
1084      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1085          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1086      else      else
1087          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1088          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1089          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1090          RETVAL=$?          RETVAL=$?
# Line 908  for i in $PACKAGES ; do Line 1217  for i in $PACKAGES ; do
1217      fi      fi
1218  done  done
1219    
1220  #  This is compatible with the old genmake.  The "DISABLE_*" flags  #  Build MNC templates and check for ability to build and use NetCDF
1221  #  need to be replaced by the "ALLOW_*" flags set below.  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1222  #  RETVAL=$?
1223  # echo -n "  Setting package-specific CPP flags:  "  if test "x$RETVAL" = x0 ; then
1224  # pkrm=( mom_fluxform mom_vecinv generic_advdiff )      ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1
1225  # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )      RETVAL=$?
1226  # echo -n "  "      if test "x${RETVAL}" = x0 ; then
1227  # i=0          rm -f make_mnc.errors
1228  # while test $i -lt "${#pkrm[@]}" ; do      else
1229  #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1          echo "Error: problem encountered while building source files in pkg/mnc:"
1230  #     RETVAL=$?          cat make_mnc.errors 1>&2
1231  #     if test "x$RETVAL" = x1 ; then          exit 1
1232  #       DEFINES="$DEFINES ${pkdef[$i]}"      fi
1233  #       echo -n " ${pkdef[$i]}"      if test "x$HAVE_NETCDF" != xt ; then
1234  #     fi          cat <<EOF
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
 # Create a list of #define and #undef to enable/disable packages  
 PACKAGES_DOT_H=PACKAGES_CONFIG.h  
 cat <<EOF >$PACKAGES_DOT_H".tmp"  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
1235    
1236  #ifndef PACKAGES_H  WARNING: the "mnc" package has been enabled but tests failed to
1237  #define PACKAGES_H    compile and/or execute NetCDF applications.  Please check that:
1238    
1239  C  Packages disabled by genmake:    1) NetCDF is installed for your compiler and
1240      2) the LIBS variable (within the 'optfile") specifies the correct
1241           NetCDF library to link against.
1242      
1243  EOF  EOF
1244        fi
1245    fi
1246    
1247    # Create a list of #define and #undef to enable/disable packages
1248    PACKAGES_DOT_H=PACKAGES_CONFIG.h
1249  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
1250  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
1251  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
1252  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
1253  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
1254  all_pack=  all_pack=
1255    DISABLED_PACKAGES=
1256  for n in $names ; do  for n in $names ; do
1257      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
1258          has_pack="f"          has_pack="f"
# Line 958  for n in $names ; do Line 1264  for n in $names ; do
1264          done          done
1265          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1266              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1267              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
 #           DEFINES="$DEFINES -U$undef"  
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
1268          fi          fi
1269      fi      fi
1270  done  done
1271  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
1272  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1273      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1274      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
1275  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
1276    
1277  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1278      case $i in      case $i in
1279          aim_v23)          aim_v23)
1280              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
1281              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
1282              ;;              ;;
1283      esac      esac
1284  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1285    
1286  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
1287    
1288  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1289  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1290  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1291      STANDARDDIRS="eesupp model"      STANDARDDIRS="eesupp model"
1292  fi  fi
1293  for d in $STANDARDDIRS ; do  if test "x$STANDARDDIRS" != x ; then
1294      adr="$ROOTDIR/$d/src"      for d in $STANDARDDIRS ; do
1295      if test ! -d $adr ; then          adr="$ROOTDIR/$d/src"
1296          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1297          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1298          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1299      else              exit 1
1300          SOURCEDIRS="$SOURCEDIRS $adr"          else
1301      fi              SOURCEDIRS="$SOURCEDIRS $adr"
1302      adr="$ROOTDIR/$d/inc"          fi
1303      if test ! -d $adr ; then          adr="$ROOTDIR/$d/inc"
1304          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1305          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1306          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1307      else              exit 1
1308          INCLUDEDIRS="$INCLUDEDIRS $adr"          else
1309      fi              INCLUDEDIRS="$INCLUDEDIRS $adr"
1310  done          fi
1311        done
1312    fi
1313    
1314  echo " Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
1315  echo " of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
1316  CPP_OPTIONS=  CPP_OPTIONS=
1317    CPP_EEOPTIONS=
1318  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
1319    names=`ls -1 "$ROOTDIR/pkg"`
1320  for i in $spaths ; do  for i in $spaths ; do
1321      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
1322      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
1323          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
1324          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
1325          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
1326            for n in $names ; do
1327                test_for_package_in_cpp_options $CPP_OPTIONS $n
1328            done
1329        fi
1330        try="$i/CPP_EEOPTIONS.h"
1331        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
1332            echo "    found CPP_EEOPTIONS=\"$try\""
1333            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
1334    #**** not yet enabled ****
1335    #        test_for_mpi_in_cpp_eeoptions $try
1336    #**** not yet enabled ****
1337            CPP_EEOPTIONS="$try"
1338      fi      fi
1339  done  done
1340  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
1341      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
1342      exit 1      exit 1
1343  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
1344    
1345  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
1346  #  compiler.  #  compiler.
# Line 1077  for i in $SOURCEDIRS ; do Line 1355  for i in $SOURCEDIRS ; do
1355      done      done
1356  done  done
1357    
 cat <<EOF > adjoint_sed  
 s/call adopen(/call adopen ( mythid,\\  
      \&           /g  
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
1358    
1359  echo  echo
1360  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
# Line 1118  for d in $alldirs ; do Line 1385  for d in $alldirs ; do
1385      for sf in $sfiles ; do      for sf in $sfiles ; do
1386          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1387              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1388                    case $d/$sf in
1389                      ./$PACKAGES_DOT_H)
1390                            ;;
1391                      ./AD_CONFIG.h)
1392                            ;;
1393                      ./FC_NAMEMANGLE.h)
1394                            ;;
1395                      *)
1396                            touch .links.tmp/$sf
1397                            deplist="$deplist $sf"
1398                            ;;
1399                    esac
1400                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`
                 touch .links.tmp/$sf  
                 deplist="$deplist $sf"  
1401                  case $extn in                  case $extn in
1402                      F)                      F)
1403                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
# Line 1172  echo "# by the command:" >> $MAKEFILE Line 1449  echo "# by the command:" >> $MAKEFILE
1449  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $@" >> $MAKEFILE
1450  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1451  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE
1452    
1453    EXE_AD=$EXECUTABLE"_ad"
1454    EXE_FTL=$EXECUTABLE"_ftl"
1455    EXE_SVD=$EXECUTABLE"_svd"
1456    
1457  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1458    #
1459    # OPTFILE="$OPTFILE"
1460  #  #
1461  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
1462  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 1202  TOOLSDIR    = ${TOOLSDIR} Line 1486  TOOLSDIR    = ${TOOLSDIR}
1486    
1487  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
1488  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
1489    EXE_AD      = ${EXE_AD}
1490    EXE_FTL     = ${EXE_FTL}
1491    EXE_SVD     = ${EXE_SVD}
1492    
1493    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1494    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1495    
1496    # These files are created by Makefile
1497    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h
1498    
1499  EOF  EOF
1500    
# Line 1267  cat >>$MAKEFILE <<EOF Line 1560  cat >>$MAKEFILE <<EOF
1560  .SUFFIXES: .o .f .p .F .c .F90 .f90  .SUFFIXES: .o .f .p .F .c .F90 .f90
1561    
1562  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1563  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
1564            @echo Creating \$@ ...
1565          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1566  depend:  depend:
1567          @make links          @make links
1568          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1569          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1570    
1571  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
1572    
1573  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
1574    
# Line 1283  output.txt: \$(EXECUTABLE) Line 1577  output.txt: \$(EXECUTABLE)
1577          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1578    
1579  clean:  clean:
1580          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template
1581  Clean:  Clean:
1582          @make clean          @make clean
1583          @make cleanlinks          @make cleanlinks
1584          -rm -f Makefile.bak genmake_state genmake_optfile make.log          -rm -f \$(SPECIAL_FILES)
1585            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
1586  CLEAN:  CLEAN:
1587          @make Clean          @make Clean
1588          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
# Line 1297  CLEAN: Line 1592  CLEAN:
1592    
1593  #eh3 Makefile: makefile  #eh3 Makefile: makefile
1594  makefile:  makefile:
1595          ${0} $@          $THIS_SCRIPT $@
1596  cleanlinks:  cleanlinks:
1597          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1598    
1599    # Special targets ($SPECIAL_FILES) which are create by make
1600    ${PACKAGES_DOT_H}:
1601            @echo Creating \$@ ...
1602            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
1603    AD_CONFIG.h:
1604            @echo Creating \$@ ...
1605            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1606    FC_NAMEMANGLE.h:
1607            @echo Creating \$@ ...
1608            echo "$FC_NAMEMANGLE" > \$@
1609    
1610  # The normal chain of rules is (  .F - .f - .o  )  # The normal chain of rules is (  .F - .f - .o  )
1611  .F.f:  .F.f:
1612          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
# Line 1350  for i in $AD_FILES ; do Line 1656  for i in $AD_FILES ; do
1656      echo -n " $i" >> $MAKEFILE      echo -n " $i" >> $MAKEFILE
1657  done  done
1658  echo >> $MAKEFILE  echo >> $MAKEFILE
1659    rm -f ad_files
1660    
1661  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1662    
1663  ad_input_code.f: \$(F77FILES)  # ... AD ...
1664    adall: ad_taf
1665    adtaf: ad_taf_output.f
1666    adtamc: ad_tamc_output.f
1667    
1668    ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1669            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
1670            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
1671            -rm -f ad_config.template
1672            @make \$(F77FILES)
1673          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
1674          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
1675    
 # ... AD ...  
1676  ad_taf_output.f: ad_input_code.f  ad_taf_output.f: ad_input_code.f
1677          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1678          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1679    
1680    adtafonly:
1681            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1682            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1683    
1684  ad_taf: ad_taf_output.o \$(OBJFILES)  ad_taf: ad_taf_output.o \$(OBJFILES)
1685          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
1686    
1687  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.f: ad_input_code.f
1688          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
1689          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f
1690    
1691  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
1692          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
1693    
1694    
1695  # ... FTL ...  # ... FTL ...
1696  ftl_taf_output.f: ad_input_code.f  ftlall: ftl_taf
1697          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f  ftltaf: ftl_taf_output.f
1698          cat ad_input_code_ftl.f | sed -f adjoint_sed > ftl_taf_output.f  ftltamc: ftl_tamc_output.f
1699    
1700    ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1701            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
1702            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
1703            -rm -f ftl_config.template
1704            @make \$(F77FILES)
1705            @make \$(AD_FLOW_FILES)
1706            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
1707    
1708    ftl_taf_output.f: ftl_input_code.f
1709            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1710            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1711    
1712    ftltafonly:
1713            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1714            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1715    
1716  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
1717          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
1718    
1719  ftl_tamc_output.f: ad_input_code.f  ftl_tamc_output.f: ftl_input_code.f
1720          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
1721          cat ad_input_code_ftl.f | sed -f adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f
1722    
1723  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
1724          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
1725    
1726    
1727  # ... SVD ...  # ... SVD ...
1728  svd_taf_output.f: ad_input_code.f  svdtaf: ad_taf_output.f ftl_taf_output.f
1729          \$(TAF) \$(SVD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f  svdall: svd_taf
         cat ad_input_code_ad.f | sed -f adjoint_sed > svd_taf_output.f  
1730    
1731  svd_taf: svd_taf_output.o \$(OBJFILES)  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)
1732          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) svd_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
1733    
1734    
1735  #=========================================  #=========================================
# Line 1436  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 1770  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
1770    
1771  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
1772    
1773    # Create special header files
1774    $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
1775    if test ! -f $PACKAGES_DOT_H ; then
1776        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1777    else
1778        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
1779        RETVAL=$?
1780        if test "x$RETVAL" = x0 ; then
1781            rm -f $PACKAGES_DOT_H".tmp"
1782        else
1783            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
1784            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1785        fi
1786    fi
1787    if test ! -f AD_CONFIG.h ; then
1788        $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
1789    fi
1790    
1791    
1792  #  Write the "state" for future records  #  Write the "state" for future records
1793  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then

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