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revision 1.83 by adcroft, Tue Jul 6 18:06:49 2004 UTC revision 1.197 by utke, Tue Sep 22 04:36:30 2009 UTC
# Line 1  Line 1 
1  #! /usr/bin/env sh  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24  }  }
25    
26  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
27  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
29      cpp_options=$1      cpp_options=$1
30      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38  }  }
39    
40  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 39  test_for_string_in_file() { Line 47  test_for_string_in_file() {
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
49          grep -i "$strng" $file          grep -i "$strng" $file
50          return 1          exit 99
51      fi      fi
52      return 0      return 0
53  }  }
# Line 122  EOF Line 130  EOF
130        stop        stop
131        end        end
132  EOF  EOF
133      test -e Makefile  &&  mv -f Makefile Makefile.bak      test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
134      cat <<EOF >> Makefile      cat <<EOF >> $MAKEFILE
 %.$tfs : %.F  
135  .SUFFIXES:  .SUFFIXES:
136  genmake_hello.$tfs: genmake_hello.F  .SUFFIXES: .$tfs .F
137          $LN genmake_hello.F genmake_hello.$tfs  .F.$tfs:
138            $LN \$< \$@
139  EOF  EOF
140      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE "genmake_hello."$tfs > /dev/null 2>&1
141      RETVAL=$?      RETVAL=$?
142      if test "x$RETVAL" != x0 -o ! -e "genmake_hello."$tfs ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
143          if test "x$FS" = x ; then          if test "x$FS" = x ; then
144              FS='for'              FS='for'
145              FS90='fr9'              FS90='fr9'
# Line 148  EOF Line 156  EOF
156              return              return
157          fi          fi
158      fi      fi
159      rm -f genmake_hello.* Makefile      rm -f genmake_hello.* $MAKEFILE
160      test -e Makefile  &&  mv -f Makefile.bak Makefile      test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
161    
162      #  If we make it here, use the extensions      #  If we make it here, use the extensions
163      FS=$tfs      FS=$tfs
# Line 158  EOF Line 166  EOF
166  }  }
167    
168    
169    look_for_makedepend()  {
170    
171        #  The "original" makedepend is part of the Imake system that is
172        #  most often distributed with XFree86 or with an XFree86 source
173        #  package.  As a result, many machines (eg. generic Linux) do not
174        #  have a system-default "makedepend" available.  For those
175        #  systems, we have two fall-back options:
176        #
177        #    1) a makedepend implementation shipped with the cyrus-imapd
178        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
179        #
180        #    2) a known-buggy xmakedpend shell script
181        #
182        #  So the choices are, in order:
183        #
184        #    1) use the user-specified program
185        #    2) use a system-wide default
186        #    3) locally build and use the cyrus implementation
187        #    4) fall back to the buggy local xmakedpend script
188        #
189        if test "x${MAKEDEPEND}" = x ; then
190            which makedepend > /dev/null 2>&1
191            RV0=$?
192            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
193            #  echo 'MAKEFILE="'$MAKEFILE'"'
194            cat <<EOF >> $MAKEFILE
195    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
196    #
197    #   Some "makedepend" implementations will die if they cannot
198    #   find a Makefile -- so this file is here to gives them an
199    #   empty one to find and parse.
200    EOF
201            cat <<EOF >> genmake_tc.f
202          program test
203          write(*,*) 'test'
204          stop
205          end
206    EOF
207            makedepend genmake_tc.f > /dev/null 2>&1
208            RV1=$?
209            test -f $MAKEFILE  &&  rm -f $MAKEFILE
210            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
211            if test "x${RV0}${RV1}" = x00 ; then
212                MAKEDEPEND=makedepend
213            else
214                echo "    a system-default makedepend was not found."
215                
216                #  Try to build the cyrus implementation
217                build_cyrus_makedepend
218                RETVAL=$?
219                if test "x$RETVAL" != x0 ; then
220                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
221                fi
222                rm -f ./genmake_cy_md
223            fi
224        else
225            #  echo "MAKEDEPEND=${MAKEDEPEND}"
226            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
227            RETVAL=$?
228            if test x"$RETVAL" = x0 ; then
229                build_cyrus_makedepend
230            fi
231        fi
232    }
233    
234    
235    build_cyrus_makedepend()  {
236        rm -f ./genmake_cy_md
237        (
238            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
239                &&  ./configure > /dev/null 2>&1  \
240                &&  make > /dev/null 2>&1
241            if test -x ./makedepend.exe ; then
242                $LN ./makedepend.exe ./makedepend
243            fi
244            ./makedepend ifparser.c > /dev/null 2>&1  \
245                &&  echo "true"
246        ) > ./genmake_cy_md
247        grep true ./genmake_cy_md > /dev/null 2>&1
248        RETVAL=$?
249        rm -f ./genmake_cy_md
250        if test "x$RETVAL" = x0 ; then
251            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
252            return 0
253        else
254            echo "WARNING: unable to build cyrus-imapd-makedepend"
255            return 1
256        fi
257    }
258    
259    
260    build_embed_encode()
261    {
262        printf "  building the embed-encode utility...  "
263        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265                echo
266                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267                echo
268                EMBED_SRC=f
269                return 1
270            fi
271            clist="cc gcc c89 $CC"
272            for ic in $clist ; do
273                comm="$ic -o encode_files encode_files.c"
274                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275                RETVAL=$?
276                if test "x$RETVAL" = x0 ; then
277                    echo "OK"
278                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279                    return 0
280                fi
281            done
282            echo
283            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
284            echo "      so it has been disabled"
285            echo
286            EMBED_SRC=f
287            return 1
288        fi
289        echo "OK"
290        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291    }
292    
293    
294  # Guess possible config options for this host  # Guess possible config options for this host
295  find_possible_configs()  {  find_possible_configs()  {
296    
# Line 188  find_possible_configs()  { Line 321  find_possible_configs()  {
321          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
322      fi      fi
323    
324      #  The "original" makedepend is part of the Imake system that is      look_for_makedepend
325      #  most often distributed with XFree86 or with an XFree86 source  
326      #  package.  As a result, many machines (eg. generic Linux) do not      #================================================================
327      #  have a system-default "makedepend" available.  For those      #  look for possible C compilers
328      #  systems, we have two fall-back options:      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329      #      p_CC=
330      #    1) a makedepend implementation shipped with the cyrus-imapd      for c in $tmp ; do
331      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/          rm -f ./genmake_hello.c  ./genmake_hello
332      #          cat >> genmake_hello.c << EOF
333      #    2) a known-buggy xmakedpend shell script  #include <stdio.h>
334      #  int main(int argc, char **argv) {
335      #  So the choices are, in order:    printf("Hello!\n");
336      #    return 0;
337      #    1) use the user-specified program  }
     #    2) use a system-wide default  
     #    3) locally build and use the cyrus implementation  
     #    4) fall back to the buggy local xmakedpend script  
     #  
     if test "x${MAKEDEPEND}" = x ; then  
       which makedepend > /dev/null 2>&1  
       RV0=$?  
       cat <<EOF >> genmake_tc.f  
       program test  
       write(*,*) 'test'  
       stop  
       end  
338  EOF  EOF
339        makedepend genmake_tc.f > /dev/null 2>&1          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
340        RV1=$?          RETVAL=$?
341        if test ! "x${RV0}${RV1}" = x00 ; then          if test "x${RETVAL}" = x0 ; then
342           echo "    a system-default makedepend was not found."              p_CC="$p_CC $c"
343            fi
344           #  Try to build the cyrus impl      done
345           rm -f ./genmake_cy_md      rm -f ./genmake_hello.c ./genmake_hello
346           (      if test "x${p_CC}" = x ; then
347               cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cat 1>&2 <<EOF
348                   &&  ./configure > /dev/null 2>&1  \  
349                   &&  make > /dev/null 2>&1  Error: No C compilers were found in your path.  Please specify one using:
350               if test -x ./makedepend.exe ; then  
351                   $LN ./makedepend.exe ./makedepend      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
352               fi      2) the CC or MITGCM_CC environment variables.
353               ./makedepend ifparser.c > /dev/null 2>&1  \  
354                   &&  echo "true"  EOF
355           ) > ./genmake_cy_md          exit 1
356           grep true ./genmake_cy_md > /dev/null 2>&1      else
357           RETVAL=$?          echo "  The possible C compilers found in your path are:"
358           if test "x$RETVAL" = x0 ; then          echo "   "$p_CC
359               MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          if test "x$CC" = x ; then
360           else              CC=`echo $p_CC | $AWK '{print $1}'`
361               MAKEDEPEND='$(TOOLSDIR)/xmakedepend'              echo "  Setting C compiler to: "$CC
362           fi          fi
          rm -f ./genmake_cy_md  
       fi  
363      fi      fi
364    
365      # look for possible fortran compilers      #================================================================
366      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      #  look for possible FORTRAN compilers
367        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 269  Error: No Fortran compilers were found i Line 389  Error: No Fortran compilers were found i
389    
390      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
391      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
392      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
393    
394  EOF  EOF
395          exit 1          exit 1
396      else      else
397          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
398          echo "   "$p_FC          echo "   "$p_FC
399          if test "x$FC" = x ; then      fi
400              FC=`echo $p_FC | $AWK '{print $1}'`  
401              echo "  Setting FORTRAN compiler to: "$FC      #  Use the first of the compilers found in the current PATH
402          fi      #  that has a correctly-named optfile
403        if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
404            for i in $p_FC ; do
405                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
406                if test -r $OPTFILE ; then
407                    echo "  Setting OPTFILE to: "$OPTFILE
408                    break
409                fi
410            done
411      fi      fi
412    
413      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
# Line 440  Usage: "$0" [OPTIONS] Line 568  Usage: "$0" [OPTIONS]
568            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
569            "usual suspects" such as g77, f77, etc.            "usual suspects" such as g77, f77, etc.
570    
571        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
572              Use "NAME" as the C compiler.  By default, genmake
573              will search for a working compiler by trying a list of
574              "usual suspects" such as gcc, c89, cc, etc.
575    
576      -[no]ieee | --[no]ieee      -[no]ieee | --[no]ieee
577            Do or don't use IEEE numerics.  Note that this option            Do or don't use IEEE numerics.  Note that this option
578            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
579            is being used.            is being used.
580    
581        -ignoretime | -ignore_time | --ignoretime | --ignore_time
582              Ignore all the "wall clock" routines entirely.  This will
583              not in any way hurt the model results -- it simply means
584              that the code that checks how long the model spends in
585              various routines will give junk values.
586    
587        -ts | --ts
588              Produce timing information per timestep
589        -papis | --papis
590              Produce summary MFlop/s (and IPC) with PAPI per timestep
591        -pcls | --pcls
592              Produce summary MFlop/s etc. with PCL per timestep
593        -foolad | --foolad
594              Fool the AD code generator
595        -papi | --papi
596              Performance analysis with PAPI
597        -pcl | --pcl
598              Performance analysis with PCL
599        -hpmt | --hpmt
600              Performance analysis with the HPM Toolkit
601    
602        -gsl | --gsl
603              Use GSL to control floating point rounding and precision
604        -devel | --devel
605              Add additional warning and debugging flags for development
606    
607      -mpi | --mpi      -mpi | --mpi
608            Include MPI header files and link to MPI libraries            Include MPI header files and link to MPI libraries
609      -mpi=PATH | --mpi=PATH      -mpi=PATH | --mpi=PATH
610            Include MPI header files and link to MPI libraries using MPI_ROOT            Include MPI header files and link to MPI libraries using MPI_ROOT
611            set to PATH. i.e. Include files from $PATH/include, link to libraries            set to PATH. i.e. Include files from \$PATH/include, link to libraries
612            from $PATH/lib and use binaries from $PATH/bin.            from \$PATH/lib and use binaries from \$PATH/bin.
613    
614        -omp | --omp
615              Activate OpenMP code + use Compiler option OMPFLAG
616        -omp=OMPFLAG | --omp=OMPFLAG
617              Activate OpenMP code + use Compiler option OMPFLAG
618    
619        -es | --es | -embed-source | --embed-source
620              Embed a tarball containing the full source code
621              (including the Makefile, etc.) used to build the
622              executable [off by default]
623    
624      -bash NAME      -bash NAME
625            Explicitly specify the Bourne or BASH shell to use            Explicitly specify the Bourne or BASH shell to use
# Line 475  EOF Line 644  EOF
644    
645  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
646  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
647    
648        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
649        if test ! "x$FC_NAMEMANGLE" = x ; then
650            return 0
651        fi
652    
653      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
654            
655      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
# Line 492  WARNING: Please contact <MITgcm-support@ Line 667  WARNING: Please contact <MITgcm-support@
667  EOF  EOF
668          return 1          return 1
669      fi      fi
670      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
671      RETVAL=$?      RETVAL=$?
672      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
673          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 504  WARNING: Please contact <MITgcm-support@ Line 679  WARNING: Please contact <MITgcm-support@
679  EOF  EOF
680          return 1          return 1
681      fi      fi
682      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
683        subroutine tcall( string )        subroutine tcall( string )
684        character*(*) string        character*(*) string
685        call tsub( string )        call tsub( string )
686        end        end
687  EOF  EOF
688      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
689      RETVAL=$?      RETVAL=$?
690      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
691          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 522  WARNING: Please contact <MITgcm-support@ Line 697  WARNING: Please contact <MITgcm-support@
697  EOF  EOF
698          return 1          return 1
699      fi      fi
700      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
701      RETVAL=$?      RETVAL=$?
702      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
703          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 576  void FC_NAMEMANGLE(cloc) ( double *curti Line 751  void FC_NAMEMANGLE(cloc) ( double *curti
751   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
752  }  }
753  EOF  EOF
754      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
755        echo $COMM >> genmake_warnings
756        $COMM >> genmake_warnings 2>&1
757      RET_C=$?      RET_C=$?
758      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
759        program hello        program hello
760        Real*8 wtime        REAL*8 wtime
761        external cloc        external cloc
762        call cloc(wtime)        call cloc(wtime)
763        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
764        end program hello        end
765  EOF  EOF
766      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
767        echo $COMM >> genmake_warnings
768        $COMM >> genmake_warnings 2>&1
769      RET_F=$?      RET_F=$?
770      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
771      RETVAL=$?      RETVAL=$?
772      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
773          HAVE_CLOC=t          HAVE_CLOC=t
# Line 598  EOF Line 777  EOF
777  }  }
778    
779    
780    check_HAVE_SIGREG()  {
781        if test ! "x$HAVE_SIGREG" = x ; then
782            return
783        fi
784        get_fortran_c_namemangling
785        cat <<EOF > genmake_tc_1.c
786    $FC_NAMEMANGLE
787    #include <stdlib.h>
788    #include <stdio.h>
789    #include <signal.h>
790    #include <errno.h>
791    #include <ucontext.h>
792    
793    int * ip;
794    
795    static void killhandler(
796        unsigned int sn, siginfo_t  si, struct ucontext *sc )
797    {
798        *ip = *ip + 1;
799        return;
800    }
801    
802    void FC_NAMEMANGLE(sigreg) (int * aip)
803    {
804        struct sigaction s;
805        ip = aip;
806        s.sa_flags = SA_SIGINFO;
807        s.sa_sigaction = (void *)killhandler;
808        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
809            printf("Sigaction returned error = %d\n", errno);
810            exit(0);
811        }
812        return;
813    }
814    EOF
815        COMM="$CC $CFLAGS -c genmake_tc_1.c"
816        echo $COMM >> genmake_warnings
817        $COMM >> genmake_warnings 2>&1
818        RET_C=$?
819        cat <<EOF > genmake_tc_2.$FS
820          program hello
821          integer anint
822          common /iv/ anint
823          external sigreg
824          call sigreg(anint)
825          end
826    EOF
827        echo >> genmake_warnings
828        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
829        cat genmake_tc_2.$FS >> genmake_warnings
830        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
831        echo $COMM >> genmake_warnings
832        $COMM >> genmake_warnings 2>&1
833        RETVAL=$?
834        if test "x$RETVAL" = x0 ; then
835            HAVE_SIGREG=t
836            DEFINES="$DEFINES -DHAVE_SIGREG"
837        fi
838        rm -f genmake_tc*
839    }
840    
841    
842    check_HAVE_SETRLSTK()  {
843        if test "x$HAVE_SETRLSTK" = xt ; then
844            DEFINES="$DEFINES -DHAVE_SETRLSTK"
845            return
846        fi  
847        if test ! "x$HAVE_SETRLSTK" = x ; then
848            return
849        fi
850        get_fortran_c_namemangling
851        cat <<EOF > genmake_tc_1.c
852    $FC_NAMEMANGLE
853    #include <sys/time.h>
854    #include <sys/resource.h>
855    #include <unistd.h>
856    void FC_NAMEMANGLE(setrlstk) ()
857    {
858        struct rlimit rls;
859        rls.rlim_cur = RLIM_INFINITY;
860        rls.rlim_max = RLIM_INFINITY;
861        setrlimit(RLIMIT_STACK, &rls);
862        return;
863    }
864    EOF
865        COMM="$CC $CFLAGS -c genmake_tc_1.c"
866        echo $COMM >> genmake_warnings
867        $COMM >> genmake_warnings 2>&1
868        RET_C=$?
869        cat <<EOF > genmake_tc_2.$FS
870          program hello
871          external setrlstk
872          call setrlstk()
873          end
874    EOF
875        echo >> genmake_warnings
876        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
877        cat genmake_tc_2.$FS >> genmake_warnings
878        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
879        echo $COMM >> genmake_warnings
880        $COMM >> genmake_warnings 2>&1
881        RETVAL=$?
882        if test "x$RETVAL" = x0 ; then
883            HAVE_SETRLSTK=t
884            DEFINES="$DEFINES -DHAVE_SETRLSTK"
885        fi
886        rm -f genmake_tc*
887    }
888    
889    
890    check_HAVE_STAT()  {
891        get_fortran_c_namemangling
892        cat <<EOF > genmake_tc_1.c
893    $FC_NAMEMANGLE
894    #include <stdio.h>
895    #include <stdlib.h>
896    #include <unistd.h>
897    #include <sys/stat.h>
898    #include <sys/types.h>
899    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
900    {
901        char name[512];
902        struct stat astat;
903    
904        name[0] = 'a'; name[1] = '\0';
905        if (! stat(name, &astat))
906            *nbyte = (int)(astat.st_size);
907        else
908            *nbyte = -1;
909    }
910    EOF
911        COMM="$CC $CFLAGS -c genmake_tc_1.c"
912        echo $COMM >> genmake_warnings
913        $COMM >> genmake_tc.log 2>&1
914        RET_C=$?
915        cat <<EOF > genmake_tc_2.$FS
916          program hello
917          integer nbyte
918          call tfsize(nbyte)
919          print *," HELLO WORLD", nbyte
920          end
921    EOF
922        echo >> genmake_warnings
923        echo "running: check_HAVE_STAT()" >> genmake_warnings
924        cat genmake_tc_2.$FS >> genmake_warnings
925        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
926        echo $COMM >> genmake_warnings
927        $COMM >> genmake_tc.log 2>&1
928        RETVAL=$?
929        if test "x$RETVAL" = x0 ; then
930            HAVE_STAT=t
931            DEFINES="$DEFINES -DHAVE_STAT"
932        fi
933        rm -f genmake_tc*
934    }
935    
936    
937  check_netcdf_libs()  {  check_netcdf_libs()  {
938      cat <<EOF > genmake_tnc.for      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
939            return
940        fi
941        echo >> genmake_warnings
942        echo "running: check_netcdf_libs()" >> genmake_warnings
943        cat <<EOF > genmake_tnc.F
944        program fgennc        program fgennc
945  #include "netcdf.inc"  #include "netcdf.inc"
946    EOF
947        if test ! "x$MPI" = x ; then
948            echo '#include "mpif.h"' >> genmake_tnc.F
949        fi
950        cat <<EOF >> genmake_tnc.F
951        integer iret, ncid, xid        integer iret, ncid, xid
952        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
953        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
# Line 611  check_netcdf_libs()  { Line 957  check_netcdf_libs()  {
957        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
958        end        end
959  EOF  EOF
960      $CPP genmake_tnc.for > genmake_tnc.f  \      echo "===  genmake_tnc.F  ===" > genmake_tnc.log
961          &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1      cat genmake_tnc.F >> genmake_tnc.log
962        echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
963        RET_CPP=f
964        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
965        echo "$COMM" >> genmake_tnc.log
966        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
967        if test "x$RET_CPP" = xf ; then
968            echo "  WARNING: CPP failed to pre-process the netcdf test." \
969                >> genmake_tnc.log
970            echo "    Please check that \$INCLUDES is properly set." \
971                >> genmake_tnc.log
972        fi
973        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
974        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
975        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
976            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
977      RET_COMPILE=$?      RET_COMPILE=$?
978      test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1      cat genmake_tnc.log >> genmake_warnings
979      RETVAL=$?  
980      if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then      #EH3  Remove test program execution for machines that either disallow
981        #EH3  execution or cannot support it (eg. cross-compilers)
982        #EH3
983        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
984        #EH3 RETVAL=$?
985        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
986    
987        if test "x$RET_COMPILE" = x0 ; then
988          HAVE_NETCDF=t          HAVE_NETCDF=t
989      else      else
990          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
991          $CPP genmake_tnc.for > genmake_tnc.f  \          echo "try again with added '-lnetcdf'" > genmake_tnc.log
992              &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
993              $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
994            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
995            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
996                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
997                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
998          RET_COMPILE=$?          RET_COMPILE=$?
999          test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1          cat genmake_tnc.log >> genmake_warnings
1000          RETVAL=$?          if test "x$RET_COMPILE" = x0 ; then
         if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then  
1001              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
1002              HAVE_NETCDF=t              HAVE_NETCDF=t
1003          else          else
1004            # try again with "-lnetcdff" added to the libs
1005                echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1006                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1007                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1008                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1009                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1010                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1011                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1012                RET_COMPILE=$?
1013              cat genmake_tnc.log >> genmake_warnings              cat genmake_tnc.log >> genmake_warnings
1014                if test "x$RET_COMPILE" = x0 ; then
1015                    LIBS="$LIBS -lnetcdff -lnetcdf"
1016                    HAVE_NETCDF=t
1017                fi
1018          fi          fi
1019      fi      fi
1020      rm -f genmake_tnc*      rm -f genmake_tnc*
# Line 649  PLATFORM= Line 1033  PLATFORM=
1033  LN=  LN=
1034  S64=  S64=
1035  KPP=  KPP=
1036  FC=  #FC=
1037  CPP=  #CC=gcc
1038    #CPP=
1039  LINK=  LINK=
1040  DEFINES=  DEFINES=
1041  PACKAGES=  PACKAGES=
1042  ENABLE=  ENABLE=
1043  DISABLE=  DISABLE=
1044  MAKEFILE=  # MAKEFILE=
1045  MAKEDEPEND=  # MAKEDEPEND=
1046  PDEPEND=  PDEPEND=
1047  DUMPSTATE=t  DUMPSTATE=t
1048  PDEFAULT=  PDEFAULT=
1049  OPTFILE=  OPTFILE=
1050  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1051  FFLAGS=  FFLAGS=
1052  FOPTIM=  FOPTIM=
1053    FEXTRAFLAGS=
1054    USE_EXTENDED_SRC=
1055    EXTENDED_SRC_FLAG=
1056  CFLAGS=  CFLAGS=
1057  KFLAGS1=  KFLAGS1=
1058  KFLAGS2=  KFLAGS2=
# Line 675  NOOPTFILES= Line 1063  NOOPTFILES=
1063  NOOPTFLAGS=  NOOPTFLAGS=
1064  MPI=  MPI=
1065  MPIPATH=  MPIPATH=
1066    OMP=
1067    OMPFLAG=
1068    TS=
1069    PAPIS=
1070    PCLS=
1071    FOOLAD=
1072    PAPI=
1073    PCL=
1074    HPMT=
1075    GSL=
1076    DEVEL=
1077    HAVE_TEST_L=
1078    
1079  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1080  HAVE_SYSTEM=  HAVE_SYSTEM=
1081  HAVE_FDATE=  HAVE_FDATE=
1082  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1083  HAVE_CLOC=  HAVE_CLOC=
1084    # HAVE_SETRLSTK=
1085    HAVE_STAT=
1086  HAVE_NETCDF=  HAVE_NETCDF=
1087  HAVE_ETIME=  HAVE_ETIME=
1088    IGNORE_TIME=
1089    
1090  MODS=  MODS=
1091  TOOLSDIR=  TOOLSDIR=
# Line 693  STANDARDDIRS="USE_THE_DEFAULT" Line 1096  STANDARDDIRS="USE_THE_DEFAULT"
1096  G2ARGS=  G2ARGS=
1097  BASH=  BASH=
1098  PWD=`pwd`  PWD=`pwd`
1099  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1100  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1101  THISHOSTNAME=`hostname`  EMBED_SRC=
1102    THISHOST=`hostname`
1103  THISCWD=`pwd`  THISCWD=`pwd`
1104  THISDATE=`date`  THISDATE=`date`
1105    THISUSER=`echo $USER`
1106    THISVER=
1107  MACHINE=`uname -a`  MACHINE=`uname -a`
1108  EXECUTABLE=  EXECUTABLE=
1109  EXEHOOK=  EXEHOOK=
# Line 726  TAMC_EXTRA= Line 1132  TAMC_EXTRA=
1132    
1133  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1134  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1135  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"
1136    
1137  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1138  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1139  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1140  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1141  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1142  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
1143    
# Line 756  EOF Line 1162  EOF
1162    
1163  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1164  gm_local="genmake_local"  gm_local="genmake_local"
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
1165  printf "  getting local config information:  "  printf "  getting local config information:  "
1166  if test -e $gm_local ; then  if test -f $gm_local ; then
1167      echo "using $gm_local"      echo "using $gm_local"
1168      . $gm_local      . $gm_local
1169      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
# Line 772  else Line 1172  else
1172      echo "none found"      echo "none found"
1173  fi  fi
1174    
1175  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1176  #parse_options  #parse_options
1177  ac_prev=  ac_prev=
1178  for ac_option ; do  for ac_option in "$@" ; do
1179    
1180      G2ARGS="$G2ARGS \"$ac_option\""      G2ARGS="$G2ARGS \"$ac_option\""
1181    
# Line 880  for ac_option ; do Line 1271  for ac_option ; do
1271  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1272  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1273  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1274                        
1275            -cc | --cc)
1276                ac_prev=CC ;;
1277            -cc=* | --cc=*)
1278                CC=$ac_optarg ;;
1279            
1280          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1281              ac_prev=FC ;;              ac_prev=FC ;;
1282          -fc=* | --fc=*)          -fc=* | --fc=*)
# Line 901  for ac_option ; do Line 1297  for ac_option ; do
1297          -noieee | --noieee)          -noieee | --noieee)
1298              IEEE= ;;              IEEE= ;;
1299    
1300            -ts | --ts)
1301                TS=true ;;
1302            -papis | --papis)
1303                PAPIS=true ;;
1304            -pcls | --pcls)
1305                PCLS=true ;;
1306            -foolad | --foolad)
1307                FOOLAD=true ;;
1308            -papi | --papi)
1309                PAPI=true ;;
1310            -pcl | --pcl)
1311                PCL=true ;;
1312            -hpmt | --hpmt)
1313                HPMT=true ;;
1314    
1315            -gsl | --gsl)
1316                GSL=true ;;
1317    
1318            -devel | --devel)
1319                DEVEL=true ;;
1320    
1321          -mpi | --mpi)          -mpi | --mpi)
1322              MPI=true ;;              MPI=true ;;
1323          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1324              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1325              MPI=true ;;              MPI=true ;;
1326                    
1327  #       -jam | --jam)          -omp | --omp)
1328  #           JAM=1 ;;              OMP=true ;;
1329  #       -nojam | --nojam)          -omp=* | --omp=*)
1330  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1331                OMP=true ;;
1332                    
1333          -ds | --ds)          -ds | --ds)
1334              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 924  for ac_option ; do Line 1342  for ac_option ; do
1342              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1343          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1344              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1345            
1346            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1347                IGNORE_TIME="-DIGNORE_TIME" ;;
1348    
1349            -es | --es | -embed-source | --embed-source)
1350                EMBED_SRC=t ;;
1351    
1352          -*)          -*)
1353              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 939  for ac_option ; do Line 1363  for ac_option ; do
1363            
1364  done  done
1365    
1366    
1367  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1368      echo      echo
1369      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1370      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1371      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1372      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/devel_HOWTO/"
1373      echo      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1374      echo "  for directions on how to setup and use the new \"genmake2\" input"      echo "WARNING: ignore \"./.genmakerc\" and continue."
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
1375      echo      echo
1376  fi  fi
1377    
1378    #  Find the MITgcm ${ROOTDIR}
1379  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1380      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1381        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1382          ROOTDIR=".."          ROOTDIR=".."
1383      else      else
1384          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
# Line 976  if test ! -d ${ROOTDIR} ; then Line 1402  if test ! -d ${ROOTDIR} ; then
1402      exit 1      exit 1
1403  fi  fi
1404    
1405    #  Find the MITgcm ${THISVER}
1406    version_file="${ROOTDIR}/doc/tag-index"
1407    if test -f $version_file ; then
1408        THISVER=`grep '^checkpoint' $version_file | head -1`
1409    #-  remove ./BUILD_INFO.h file if older than version_file
1410        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1411            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1412            rm -f ./BUILD_INFO.h
1413        fi
1414    fi
1415    
1416    if test "x$MAKEFILE" = x ; then
1417        MAKEFILE="Makefile"
1418    fi
1419    
1420  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1421  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1422      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 1005  if test "x$OPTFILE" != xNONE ; then Line 1446  if test "x$OPTFILE" != xNONE ; then
1446      fi      fi
1447  fi  fi
1448    
 #  Check for broken systems that cannot correctly distinguish *.F and *.f files  
 # check_for_broken_Ff  
   
1449  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:  "
1450  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1451      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
# Line 1035  if test "x${AD_OPTFILE}" != xNONE ; then Line 1473  if test "x${AD_OPTFILE}" != xNONE ; then
1473      fi      fi
1474  fi  fi
1475    
1476  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #====================================================================
1477    #  Set default values if not set by the optfile
1478    #
1479    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1480  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1481  if test ! "x$BASH" = x ; then  if test ! "x$BASH" = x ; then
1482      # add a trailing space so that it works within the Makefile syntax (see below)      # add a trailing space so that it works within the Makefile syntax (see below)
# Line 1051  Error: no Fortran compiler: please speci Line 1492  Error: no Fortran compiler: please speci
1492  EOF  EOF
1493      exit 1      exit 1
1494  fi  fi
1495    if test "x$CC" = x ; then
1496        CC=cc
1497    #     cat <<EOF 1>&2
1498    # Error: no C compiler: please specify using one of the following:
1499    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1500    #   2) the "-cc=XXX" command-line option
1501    #   3) the "./genmake_local" file
1502    # EOF
1503    #     exit 1
1504    fi
1505  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1506      LINK=$FC      LINK=$FC
1507  fi  fi
# Line 1085  EOF Line 1536  EOF
1536  else  else
1537      rm -f test_cpp      rm -f test_cpp
1538  fi  fi
1539  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
     MAKEDEPEND=makedepend  
 fi  
1540  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1541      LN="ln -s"      LN="ln -s"
1542  fi  fi
# Line 1103  Error: The command "ln -s" failed -- ple Line 1552  Error: The command "ln -s" failed -- ple
1552  EOF  EOF
1553      exit 1      exit 1
1554  fi  fi
1555    test -L genmake_tlink > /dev/null 2>&1
1556    RETVAL=$?
1557    if test "x$RETVAL" = x0 ; then
1558        HAVE_TEST_L=t
1559    fi
1560  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1561    
1562  #  Check for broken *.F/*.f handling and fix if possible  #  Check for broken *.F/*.f handling and fix if possible
# Line 1112  if test ! "x$MPI" = x ; then Line 1566  if test ! "x$MPI" = x ; then
1566        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1567        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1568  fi  fi
1569    if test ! "x$OMP" = x ; then
1570          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1571          FFLAGS="$FFLAGS $OMPFLAG"
1572          F90FLAGS="$F90FLAGS $OMPFLAG"
1573          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1574    fi
1575    
1576    if test ! "x$TS" = x ; then
1577          echo "  Turning on timing per timestep"
1578          if test ! "x$FOOLAD" = x ; then
1579                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1580          else
1581                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1582          fi
1583          PACKAGES="$PACKAGES showflops"
1584    fi
1585    if test ! "x$PAPIS" = x ; then
1586          echo "  Turning on PAPI flop summary per timestep"
1587          echo "  Please make sure PAPIINC, PAPILIB are defined"
1588          if test ! "x$FOOLAD" = x ; then
1589                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1590          else
1591                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1592          fi
1593          INCLUDES="$INCLUDES $PAPIINC"
1594          LIBS="$LIBS $PAPILIB"
1595          PACKAGES="$PACKAGES showflops"
1596    fi
1597    if test ! "x$PCLS" = x ; then
1598          echo "  Turning on PCL counter summary per timestep"
1599          echo "  Please make sure PCLINC, PCLLIB are defined"
1600          if test ! "x$FOOLAD" = x ; then
1601                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1602          else
1603                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1604          fi
1605          INCLUDES="$INCLUDES $PCLINC"
1606          LIBS="$LIBS $PCLLIB"
1607          PACKAGES="$PACKAGES showflops"
1608    fi
1609    if test ! "x$PAPI" = x ; then
1610          if test ! "x$PAPIS" = x ; then
1611              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1612              echo "  Sticking with PAPI flop summary per timestep!"
1613          else
1614              echo "  Turning on performance analysis with PAPI"
1615              echo "  Please make sure PAPIINC, PAPILIB are defined"
1616              DEFINES="$DEFINES -DUSE_PAPI"
1617              INCLUDES="$INCLUDES $PAPIINC"
1618              LIBS="$LIBS $PAPILIB"
1619          fi
1620    fi
1621    if test ! "x$PCL" = x ; then
1622          if test ! "x$PCLS" = x ; then
1623              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1624              echo "  Sticking with PCL flop summary per timestep!"
1625          else
1626              echo "  Turning on performance analysis with PCL"
1627              echo "  Please make sure PCLINC, PCLLIB are defined"
1628              DEFINES="$DEFINES -DUSE_PCL"
1629              INCLUDES="$INCLUDES $PCLINC"
1630              LIBS="$LIBS $PCLLIB"
1631          fi
1632    fi
1633    if test ! "x$HPMT" = x ; then
1634          if test ! "x$PAPI" = x ; then
1635              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1636              echo "  Sticking with PAPI!"
1637          else if test ! "x$PCL" = x ; then
1638              echo "  PCL and the HPM Toolkit cannot co-exist!"
1639              echo "  Sticking with PCL!"
1640          else
1641              echo "  Turning on performance analysis with the HPM Toolkit"
1642              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1643              DEFINES="$DEFINES -DUSE_LIBHPM"
1644              INCLUDES="$INCLUDES $HPMTINC"
1645              LIBS="$LIBS $HPMTLIB"
1646          fi
1647          fi
1648    fi
1649    if test ! "x$GSL" = x ; then
1650          echo "  Turning on use of GSL to control floating point calculations"
1651          echo "  Please make sure GSLINC, GSLLIB are defined"
1652          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1653          INCLUDES="$INCLUDES $GSLINC"
1654          LIBS="$LIBS $GSLLIB"
1655    fi
1656    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1657    if test ! "x$USE_EXTENDED_SRC" = x ; then
1658          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1659          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1660    fi
1661    
1662  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1663  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1664  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1665        program hello        program hello
1666        call system('echo hi')        call system('echo hi')
1667        end        end
1668  EOF  EOF
1669  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1670  RETVAL=$?  RETVAL=$?
1671  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1672      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 1133  fi Line 1679  fi
1679  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1680    
1681  printf "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1682  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1683        program hello        program hello
1684        CHARACTER(128) string        CHARACTER*(128) string
1685        string = ' '        string = ' '
1686        call fdate( string )        call fdate( string )
1687        print *, string        print *, string
1688        end        end
1689  EOF  EOF
1690  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1691  RETVAL=$?  RETVAL=$?
1692  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1693      HAVE_FDATE=t      HAVE_FDATE=t
# Line 1154  fi Line 1700  fi
1700  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1701    
1702  printf "  Do we have the etime() command using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1703  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1704        program hello        program hello
1705        REAL*4 ACTUAL, TARRAY(2)        REAL*4 ACTUAL, TARRAY(2)
1706        EXTERNAL ETIME        EXTERNAL ETIME
# Line 1163  cat > genmake_tcomp.f <<EOF Line 1709  cat > genmake_tcomp.f <<EOF
1709        print *, tarray        print *, tarray
1710        end        end
1711  EOF  EOF
1712  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1713  RETVAL=$?  RETVAL=$?
1714  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1715      HAVE_ETIME=t      HAVE_ETIME=t
# Line 1181  if test "x$HAVE_CLOC" != x ; then Line 1727  if test "x$HAVE_CLOC" != x ; then
1727      echo "yes"      echo "yes"
1728  else  else
1729      echo "no"      echo "no"
1730        if test "x$EMBED_SRC" = xt ; then
1731            echo "    WARNING: you requested file embedding but it has"
1732            echo "      been disabled since C code cannot be called"
1733            EMBED_SRC=
1734        fi
1735    fi
1736    rm -f genmake_t*
1737    
1738    printf "  Can we unlimit the stack size using $FC...  "
1739    check_HAVE_SETRLSTK
1740    if test "x$HAVE_SETRLSTK" = xt ; then
1741        echo "yes"
1742    else
1743        echo "no"
1744    fi
1745    rm -f genmake_t*
1746    
1747    printf "  Can we register a signal handler using $FC...  "
1748    check_HAVE_SIGREG
1749    if test "x$HAVE_SIGREG" = xt ; then
1750        echo "yes"
1751    else
1752        echo "no"
1753    fi
1754    rm -f genmake_t*
1755    
1756    printf "  Can we use stat() through C calls...  "
1757    check_HAVE_STAT
1758    if test "x$HAVE_STAT" != x ; then
1759        echo "yes"
1760    else
1761        echo "no"
1762  fi  fi
1763  rm -f genmake_t*  rm -f genmake_t*
1764    
# Line 1191  if test "x$HAVE_NETCDF" != x ; then Line 1769  if test "x$HAVE_NETCDF" != x ; then
1769  else  else
1770      echo "no"      echo "no"
1771  fi  fi
1772    DEFINES="$DEFINES $IGNORE_TIME"
1773    
1774    if test "x$EMBED_SRC" = xt ; then
1775        build_embed_encode
1776    fi
1777    if test "x$EMBED_SRC" = xt ; then
1778        ENABLE="$ENABLE embed_files"
1779    fi
1780    
1781    
1782  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1783  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1784  for d in $MODS ; do  for d in $MODS ; do
1785      if test ! -d $d ; then      if test ! -d $d ; then
1786          echo          echo
1787          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1788          exit 1          exit 1
1789      else      else
1790          printf " $d"          printf "$d "
1791          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1792          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1793      fi      fi
1794  done  done
1795  echo  echo
1796    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1797  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1798      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1799  fi  fi
1800    
1801  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1802      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1803        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1804          EXEDIR=../exe          EXEDIR=../exe
1805      else      else
1806          EXEDIR=.          EXEDIR=.
# Line 1235  if test ! -d ${TOOLSDIR} ; then Line 1819  if test ! -d ${TOOLSDIR} ; then
1819      exit 1      exit 1
1820  fi  fi
1821  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1822      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1823        RETVAL=$?
1824        if test "x${RETVAL}" = x0 ; then
1825            S64='$(TOOLSDIR)/set64bitConst.sh'
1826        else
1827            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1828            RETVAL=$?
1829            if test "x${RETVAL}" = x0 ; then
1830                S64='$(TOOLSDIR)/set64bitConst.csh'
1831            else
1832                cat <<EOF
1833    
1834    ERROR: neither of the two default scripts:
1835    
1836        ${TOOLSDIR}/set64bitConst.sh
1837        ${TOOLSDIR}/set64bitConst.csh
1838    
1839      are working so please check paths or specify (with \$S64) a
1840      working version of this script.
1841    
1842    EOF
1843                exit 1
1844            fi
1845        fi
1846  fi  fi
1847  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1848    
# Line 1257  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1864  if test -r $ROOTDIR"/eesupp/src/Makefile
1864      fi      fi
1865  fi  fi
1866    
1867  #same for exch2  #same for pkg/exch2 and pkg/regrid
1868  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
1869      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1870      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
1871      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1
1872      if test "x${RETVAL}" = x0 ; then          RETVAL=$?
1873          rm -f make_exch2.errors          if test "x${RETVAL}" = x0 ; then
1874      else              rm -f make_${pdir}.errors
1875          echo "Error: problem encountered while building source files in exch2:"          else
1876          cat make_exch2.errors 1>&2              echo "Error: problem encountered while building source files in pkg/${pdir}:"
1877          exit 1              cat make_${pdir}.errors 1>&2
1878                exit 1
1879            fi
1880      fi      fi
1881  fi  done
1882    
1883  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1884  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
# Line 1334  else Line 1943  else
1943              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1944          done          done
1945          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1946          while ! expand_pkg_groups; do echo > /dev/null; done          RET=1
1947            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1948          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1949      fi      fi
1950  fi  fi
# Line 1379  done Line 1989  done
1989  rm -f ./.tmp_pack  rm -f ./.tmp_pack
1990  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1991    
1992    #  Check for package MNC: if NetCDF is available, then build the MNC
1993    #  template files ; otherwise, delete mnc from the list of packages.
1994    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1995    RETVAL=$?
1996    if test "x$RETVAL" = x0 ; then
1997        if test "x$HAVE_NETCDF" != xt ; then
1998            cat <<EOF
1999    
2000    *********************************************************************
2001    WARNING: the "mnc" package was enabled but tests failed to compile
2002      NetCDF applications.  Please check that:
2003    
2004      1) NetCDF is correctly installed for this compiler and
2005      2) the LIBS variable (within the "optfile") specifies the correct
2006           NetCDF library to link against.
2007    
2008      Due to this failure, the "mnc" package is now DISABLED.
2009    *********************************************************************
2010    
2011    EOF
2012            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2013            DISABLE="$DISABLE mnc"
2014        else
2015            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2016            RETVAL=$?
2017            if test "x${RETVAL}" = x0 ; then
2018                rm -f make_mnc.errors
2019            else
2020                echo "Error: problem encountered while building source files in pkg/mnc:"
2021                cat make_mnc.errors 1>&2
2022                exit 1
2023            fi
2024        fi
2025    fi
2026    
2027    #  Check for package PROFILES: if NetCDF is not available,
2028    #  then delete profiles from the list of available packages.
2029    echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1
2030    RETVAL=$?
2031    if test "x$RETVAL" = x0 ; then
2032        if test "x$HAVE_NETCDF" != xt ; then
2033            cat <<EOF
2034    
2035    *********************************************************************
2036    WARNING: the "profiles" package was enabled but tests failed to
2037      compile NetCDF applications.  Please check that:
2038    
2039      1) NetCDF is correctly installed for this compiler and
2040      2) the LIBS variable (within the "optfile") specifies the correct
2041           NetCDF library to link against.
2042    
2043      Due to this failure, the "profiles" package is now DISABLED.
2044    *********************************************************************
2045    
2046    EOF
2047            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2048            DISABLE="$DISABLE profiles"
2049        fi
2050    fi
2051    
2052  echo "  applying package dependency rules"  echo "  applying package dependency rules"
2053  ck=  ck=
2054  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
2055      i=0      i=0
2056      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2057      rtot=$nname      rtot=$nname
2058      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2059    
2060          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2061          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1419  while test "x$ck" != xtt ; do Line 2089  while test "x$ck" != xtt ; do
2089    
2090          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2091          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2092                #echo "   " $pname ": need to add :" $dname
2093              in_dis="f"              in_dis="f"
2094              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2095                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1443  while test "x$ck" != xtt ; do Line 2114  while test "x$ck" != xtt ; do
2114              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2115              exit 1              exit 1
2116          fi          fi
2117          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2118            #i=$(( $i + 1 ))
2119      done      done
2120      ck=$ck"t"      ck=$ck"t"
2121  done  done
# Line 1462  for i in $PACKAGES ; do Line 2134  for i in $PACKAGES ; do
2134      fi      fi
2135  done  done
2136    
 #  Build MNC templates and check for ability to build and use NetCDF  
 echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  
 RETVAL=$?  
 if test "x$RETVAL" = x0 ; then  
     ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         rm -f make_mnc.errors  
     else  
         echo "Error: problem encountered while building source files in pkg/mnc:"  
         cat make_mnc.errors 1>&2  
         exit 1  
     fi  
     if test "x$HAVE_NETCDF" != xt ; then  
         cat <<EOF  
   
 WARNING: the "mnc" package has been enabled but tests failed to  
   compile and/or execute NetCDF applications.  Please check that:  
   
   1) NetCDF is installed for your compiler and  
   2) the LIBS variable (within the 'optfile") specifies the correct  
        NetCDF library to link against.  
     
 EOF  
     fi  
 fi  
   
2137  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2138  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2139  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
# Line 1508  for n in $names ; do Line 2153  for n in $names ; do
2153              fi              fi
2154          done          done
2155          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2156              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2157              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2158          fi          fi
2159      fi      fi
2160  done  done
2161  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2162  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2163      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2164      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2165  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2166    
# Line 1589  fi Line 2234  fi
2234    
2235  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2236  #  compiler.  #  compiler.
2237  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2238      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2239  fi  fi
2240  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2241  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2242      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2243      for j in $list_files ; do      for j in $list_files ; do
2244          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2245      done      done
2246  done  done
2247    if test ! "x"$FS = "x.f" ; then
2248        cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2249        mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2250    fi
2251    
2252  echo  echo
2253  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2254  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2255  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2256      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2257          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2258      fi      fi
2259  done  done
2260    
2261    if test ! "x$DIVA" = x ; then
2262        echo "  Creating the pseudo-MPI include directory"
2263        INCLUDES="-I./mpi_headers $INCLUDES"
2264        rm -rf ./mpi_headers
2265        mkdir -p ./mpi_headers
2266    
2267        if test "x$MPIINCLUDEDIR" = x ; then
2268            if test "x$MPIHOME" = x ; then
2269                MPIHOME='/usr'
2270            fi
2271            MPIINCLUDEDIR='$MPIHOME/include'
2272        fi
2273        
2274        if test -r $MPIINCLUDEDIR/mpif.h ; then
2275            for i in $MPI_HEADER_FILES; do
2276                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2277            done
2278    
2279            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2280        else
2281            echo " We cannot create a copy of mpif.h!"
2282    #       exit -1
2283        fi
2284    fi
2285    
2286  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2287  rm -rf .links.tmp  rm -rf .links.tmp
2288  mkdir .links.tmp  mkdir .links.tmp
2289    touch .links.tmp/foo
2290    if test ! -r ".links.tmp/foo" ; then
2291        echo
2292        echo "ERROR : something is wrong with your directory permissions or"
2293        echo "   your user file-creation mask (\"umask\") since creating a"
2294        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2295        echo "   not working.  Please try setting your umask to something"
2296        echo "   sane such as:"
2297        echo
2298        echo "      umask 0002"
2299        echo
2300        echo "   and please verify that you have the proper permissions for"
2301        echo "   creating sub-directories and then reading files created"
2302        echo "   within them."
2303        echo
2304        exit 1
2305    fi
2306    rm -f .links.tmp/foo
2307    
2308    if test "x$OPENAD" != x ; then
2309        OAD_DONT_COMPILE="/dev/null"
2310        OAD_DONT_TRANSFORM="/dev/null"
2311        OAD_KEEP_ORIGINAL="/dev/null"
2312        OAD_CB2M_FILES="/dev/null"
2313        echo "  looking for dontCompile file:  "
2314        for i in "." $MODS ; do
2315            if test -r $i"/dontCompile" ; then
2316                OAD_DONT_COMPILE=$i"/dontCompile"
2317                echo "     found $OAD_DONT_COMPILE"
2318                break
2319            fi
2320        done
2321        echo "  looking for dontTransform file:  "
2322        for i in "." $MODS ; do
2323            if test -r $i"/dontTransform" ; then
2324                OAD_DONT_TRANSFORM=$i"/dontTransform"
2325                echo "     found $OAD_DONT_TRANSFORM"
2326                break
2327            fi
2328        done
2329        echo "  looking for keepOriginal file:  "
2330        for i in "." $MODS ; do
2331            if test -r $i"/keepOriginal" ; then
2332                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2333                echo "     found $OAD_KEEP_ORIGINAL"
2334                break
2335            fi
2336        done
2337        echo "  looking for cb2mFiles:  "
2338        for i in "." $MODS ; do
2339            if test -r $i"/cb2mFiles" ; then
2340                OAD_CB2M_FILES=$i"/cb2mFiles"
2341                echo "     found $OAD_CB2M_FILES"
2342                break
2343            fi
2344        done
2345        echo "   OpenAD exceptions:  "
2346    fi
2347    
2348  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2349  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2350  printf 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2351  printf 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2352  printf 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2353  printf 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2354  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2355    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2356  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2357  for d in $alldirs ; do  for d in $alldirs ; do
2358      deplist=      deplist=
2359      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2360      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2361        if test "x$OPENAD" != x ; then
2362            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2363        fi
2364      for sf in $sfiles ; do      for sf in $sfiles ; do
2365          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2366              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2367                    ignore_f=f
2368                  case $d/$sf in                  case $d/$sf in
2369                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2370                            ignore_f=t
2371                          ;;                          ;;
2372                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2373                            ignore_f=t
2374                          ;;                          ;;
2375                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2376                            ignore_f=t
2377                            ;;
2378                      ./BUILD_INFO.h)
2379                            ignore_f=t
2380                            ;;
2381                      ./EMBEDDED_FILES.h)
2382                            ignore_f=t
2383                          ;;                          ;;
2384                    *)                    *)
2385                          touch .links.tmp/$sf                          #  For the local directory *ONLY*,
2386                          deplist="$deplist $sf"                          #  ignore all soft-links
2387                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2388                                ignore_f=t
2389                            else
2390                                touch .links.tmp/$sf
2391                                deplist="$deplist $sf"
2392                            fi
2393                          ;;                          ;;
2394                  esac                  esac
2395                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  if test "x$ignore_f" = xf ; then
2396                  case $extn in                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2397                      F)                      case $extn in
2398                          echo    " \\"  >> srclist.inc                        F)
2399                          printf " $sf" >> srclist.inc                          echo    " \\"  >> F77srclist.tmp
2400                            printf " $sf" >> F77srclist.tmp
2401                            if test "x$OPENAD" != x ; then
2402                                basename=${sf%%.F}
2403                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2404                                if test -z "$isAD" ; then
2405                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2406                                    if test -z "$toBeIgnored" ; then
2407                                        echo    " \\"  >> nonADF77srclist.tmp
2408                                        printf " $sf" >> nonADF77srclist.tmp
2409                                    else
2410                                        echo "    not to be compiled   :  $sf"
2411                                    fi
2412                                else # file is initially listed as an AD file we want to exclude it
2413                                     # or we want to retain the untransformed version
2414                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2415                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2416                                    if test -n "$notToBeTransformed"; then
2417                                        echo "    not to be transformed:  $sf"
2418                                    fi
2419                                    if test -n "$untransformedVersionToBeKept" ; then
2420                                        echo "    original to be kept  :  $sf"
2421                                    fi    
2422                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2423                                        echo    " \\"  >> nonADF77srclist.tmp
2424                                        printf " $sf" >> nonADF77srclist.tmp
2425                                    fi
2426                                fi
2427                            fi
2428                          ;;                          ;;
2429                      F90)                      F90)
2430                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2431                          printf " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2432                          ;;                          ;;
2433                      c)                      c)
2434                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2435                          printf " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2436                          ;;                          ;;
2437                      h)                      h)
2438                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2439                          printf " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2440                          ;;                          ;;
2441                      flow)                      flow)
2442                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.tmp
2443                          printf " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.tmp
2444                          ;;                          ;;
2445                  esac                     esac
2446                    fi
2447              fi              fi
2448          fi          fi
2449      done      done
2450      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2451          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2452            echo "" >> srclinks.tmp
2453          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2454          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2455          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2456    # This may happen when make thinks that a header file has to be "remade"
2457    # because a module it depends on has changed.  In this case we do nothing.
2458            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2459          fi
2460      fi      fi
2461  done  done
2462  rm -rf .links.tmp  rm -rf .links.tmp
2463  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2464  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2465  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2466  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2467  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2468    echo "" >> ad_flow_files.tmp
2469    
2470    CMDLINE=$0
2471    for xx in "$@" ; do nw=`echo $xx | wc -w`
2472        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2473                            else CMDLINE="$CMDLINE '$xx'" ; fi
2474    done
2475    
2476  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2477      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
2478  fi  fi
2479  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1691  echo "#    $MACHINE" >> $MAKEFILE Line 2482  echo "#    $MACHINE" >> $MAKEFILE
2482  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2483  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2484  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2485  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2486  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2487  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2488    
2489  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2490  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
# Line 1739  ENABLED_PACKAGES = ${ENABLED_PACKAGES} Line 2530  ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2530  DISABLED_PACKAGES = ${DISABLED_PACKAGES}  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2531    
2532  # These files are created by Makefile  # These files are created by Makefile
2533  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2534  EOF  EOF
2535    
2536  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2537        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2538    else
2539        echo "EMBEDDED_FILES = " >>$MAKEFILE
2540    fi
2541    
2542  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2543  # Unix ln (link)  # Unix ln (link)
2544  LN = ${LN}  LN = ${LN}
# Line 1758  KPP = ${KPP} Line 2552  KPP = ${KPP}
2552  FC = ${FC}  FC = ${FC}
2553  # Fortran compiler  # Fortran compiler
2554  F90C = ${F90C}  F90C = ${F90C}
2555    # C compiler
2556    CC = ${CC}
2557  # Link editor  # Link editor
2558  LINK = ${LINK} ${LDADD}  LINK = ${LINK} ${LDADD}
2559    
# Line 1769  INCLUDES = ${INCLUDES} Line 2565  INCLUDES = ${INCLUDES}
2565  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2566  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2567  # Optim./debug for FC  # Optim./debug for FC
2568  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2569  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2570  # Optim./debug for FC  # Optim./debug for FC
2571  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2572  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2573    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2574  # Flags for CC  # Flags for CC
2575  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2576  # Files that should not be optimized  # Files that should not be optimized
2577  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2578  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2579  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2580  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2581  # Name of the Mekfile  # Name of the Mekfile
2582  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2583    
2584  EOF  EOF
2585    
2586  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2587  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2588  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2589  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2590  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2591    cat ad_flow_files.tmp   >> $MAKEFILE
2592    
2593    rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2594    
2595  echo >> $MAKEFILE  echo >> $MAKEFILE
2596  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  
2597  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE  # add definitions for preprocessed sources
2598  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  # and note that not all systems allow case sensitive extensions
2599    # hence the $FS and $FS90 here.
2600    # for fixed format f90 files we use ff90 or FF90 resp
2601    # but these are not expected to be the original source files
2602    
2603    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2604    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2605    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2606    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2607  echo >> $MAKEFILE  echo >> $MAKEFILE
2608  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2609  echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
 rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
 rm -f ad_flow_files.inc  
2610    
2611  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2612    
2613  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2614  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2615          @echo Creating \$@ ...          @echo Creating \$@ ...
2616          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2617  depend:  depend:
2618          @make links          @make links
2619          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2620          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2621          -rm -f makedepend.out          -rm -f makedepend.out
2622    
2623  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  lib: libmitgcmuv.a
2624    
2625    libmitgcmuv.a: \$(OBJFILES)
2626            ar rcv libmitgcmuv.a \$(OBJFILES)
2627            ar d   libmitgcmuv.a main.o
2628    
2629  small_f: \$(F77FILES) \$(F90FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2630    
2631    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2632    
2633  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2634          @printf 'running ... '          @printf 'running ... '
2635          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2636    
2637  clean:  clean:
2638          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2639            -rm -rf *.o
2640            -rm -rf *.$FS *.flowdir
2641            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2642  Clean:  Clean:
2643          @make clean          @make clean
2644          @make cleanlinks          @make cleanlinks
2645          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES)
2646          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log f90mkdepend.log *.bak
2647            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2648  CLEAN:  CLEAN:
2649          @make Clean          @make Clean
2650          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2651          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2652          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2653          -rm -f \$(EXECUTABLE) output.txt STD*          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2654            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2655            -rm -rf mnc_test_*
2656    
2657  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2658  makefile:  makefile:
# Line 1841  makefile: Line 2660  makefile:
2660  cleanlinks:  cleanlinks:
2661          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2662    
2663  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2664  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2665          @echo Creating \$@ ...          @echo Creating \$@ ...
2666          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
# Line 1852  FC_NAMEMANGLE.h: Line 2671  FC_NAMEMANGLE.h:
2671          @echo Creating \$@ ...          @echo Creating \$@ ...
2672          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
2673    
2674    BUILD_INFO.h:
2675            @echo Creating \$@ ...
2676    EOF
2677    
2678    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2679    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2680    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2681    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2682    
2683    if test "x$EMBED_SRC" = xt ; then
2684        cat >>$MAKEFILE <<EOF
2685    
2686    decode_files.o : EMBEDDED_FILES.h
2687    
2688    ##  \$(F77_PP_SRC_FILES)
2689    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2690            @echo Creating \$@ ...
2691            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2692            -rm -f all_fF.tar.gz
2693            -gzip all_fF.tar
2694    
2695    EMBEDDED_FILES.h : all_fF.tar.gz
2696            @echo Creating \$@ ...
2697            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2698    
2699    EOF
2700    fi
2701    
2702    cat >>$MAKEFILE <<EOF
2703    
2704  # The normal chain of rules is (  .F - .$FS - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )
2705    
2706  %.o : %.F  ## This nullifies any default implicit rules concerning these two file types:
2707    ## %.o : %.F
2708    
2709  .F.$FS:  .F.$FS:
2710          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
# Line 1862  FC_NAMEMANGLE.h: Line 2712  FC_NAMEMANGLE.h:
2712          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2713  .F90.$FS90:  .F90.$FS90:
2714          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2715    .FF90.f$FS90:
2716            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2717  .$FS90.o:  .$FS90.o:
2718          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2719    .f$FS90.o:
2720            cp \$< \$(basename  \$<).f90
2721            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2722  .c.o:  .c.o:
2723          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2724    .flow.flowdir:
2725            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2726    
2727  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2728  .F.p:  .F.p:
# Line 1873  FC_NAMEMANGLE.h: Line 2730  FC_NAMEMANGLE.h:
2730  .p.$FS:  .p.$FS:
2731          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2732    
2733    EOF
2734    
2735  #=========================================  #=========================================
2736  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2737    #===  for TAMC/TAF  ======================
2738    
2739    if test "x$OPENAD" = x ; then
2740    
2741    cat >>$MAKEFILE <<EOF
2742    
2743  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2744  TAF            = ${TAF}  TAF            = ${TAF}
# Line 1889  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2753  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2753  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2754  for i in $ad_vars ; do  for i in $ad_vars ; do
2755      name=$i      name=$i
2756      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2757      eval $t1      eval $t1
2758      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2759      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2760  done  done
2761    
2762  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2763  echo >> $MAKEFILE  echo >> $MAKEFILE
2764  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2765  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2766  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2767      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2768      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2769  done  done
2770  echo >> $MAKEFILE  echo >> $MAKEFILE
2771  rm -f ad_files  rm -f adSrcFiles.tmp
2772    
2773  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2774    
2775  # ... AD ...  # ... AD ...
2776  adall: ad_taf  adall: \$(EXE_AD)
2777  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
2778  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2779    
2780  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
2781          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2782          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2783          -rm -f ad_config.template          -rm -f ad_config.template
2784          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2785          @make \$(AD_FLOW_FILES)          @make \$(FLOFILES)
2786          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(FLOFILES) \$(AD_FILES) > ad_input_code.$FS
2787    
2788  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
2789          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2790          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
2791            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2792    
2793  adtafonly:  adtafonly:
2794          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2795          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
2796            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2797  ad_taf: ad_taf_output.o \$(OBJFILES)  
2798          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2799            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2800  ad_tamc_output.f: ad_input_code.f  
2801          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f  ad_tamc_output.$FS: ad_input_code.$FS
2802          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2803            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2804    
2805  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2806          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2807    
2808    adonlyfwd:
2809            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2810    
2811    adtrick:
2812            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2813    
2814  # ... FTL ...  # ... FTL ...
2815  ftlall: ftl_taf  ftlall: ftl_taf
2816  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
2817  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
2818    
2819  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2820          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2821          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2822          -rm -f ftl_config.template          -rm -f ftl_config.template
2823          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2824          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2825          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2826    
2827  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
2828          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2829          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          ls -l ftl_input_code_ftl.$FS
2830            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2831    
2832  ftltafonly:  ftltafonly:
2833          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2834          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          ls -l ftl_input_code_ftl.$FS
2835            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2836    
2837  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2838          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2839    
2840  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.$FS: ftl_input_code.$FS
2841          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2842          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2843    
2844  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2845          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2846    
2847    
2848  # ... SVD ...  # ... SVD ...
2849  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2850  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2851            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2852    svdall: svd_touch svd_taf
2853    
2854  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
2855          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2856    
2857            @echo "--->>> Only COMPILE svd code! <<<---"
2858            @echo "--->>> Assumes you previously <<<---"
2859            @echo "--->>> did make svdtaf        <<<---"
2860    
2861    svd_touch:
2862            @echo "--->>> Only COMPILE svd code! <<<---"
2863            @echo "--->>> Assumes you previously <<<---"
2864            @echo "--->>> did make svdtaf        <<<---"
2865            touch ad_taf_output.$FS ftl_taf_output.$FS
2866            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2867            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2868            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2869            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2870            -rm -f ftl_config.template
2871    
2872  #=========================================  EOF
2873    
2874    fi
2875    
2876    #===  for OpenAD  ========================
2877    
2878    if test "x$OPENAD" != x ; then
2879    
2880    # ============ begin OpenAD specific section ==============
2881    
2882    cat >>$MAKEFILE <<EOF
2883    
2884    # all the source files linked from the various locations:
2885    ALL_LINKED_FILES= \
2886    \$(F77_SRC_FILES) \
2887    \$(C_SRC_FILES) \
2888    \$(H_SRC_FILES) \
2889    \$(F90_SRC_FILES) \
2890    \$(SPECIAL_FILES)
2891    
2892    ifndef OPENADROOT
2893      \$(error "Error:  environment variable OPENADROOT not defined!")
2894    endif
2895    
2896    ifndef XAIFSCHEMAROOT
2897      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2898    endif
2899    
2900    ifndef XAIFBOOSTERROOT
2901      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2902    endif
2903    
2904    EOF
2905    
2906    echo "  Add the source list for common block to module conversion "
2907    echo >> $MAKEFILE
2908    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2909    for i in `cat ${OAD_CB2M_FILES}` ; do
2910      echo    " \\" >> $MAKEFILE
2911      printf " $i" >> $MAKEFILE
2912    done
2913    echo >> $MAKEFILE
2914    
2915    echo "  Add the source list for AD code generation"
2916    echo >> $MAKEFILE
2917    printf "AD_FILES = " >> $MAKEFILE
2918    for i in `cat ${OAD_CB2M_FILES}` ; do
2919      echo    " \\" >> $MAKEFILE
2920      printf " ${i}_mod.f$FS90" >> $MAKEFILE
2921    done
2922    AD_FILES=`cat adSrcFiles.tmp`
2923    for i in $AD_FILES ; do
2924      basename=${i%%.f}
2925      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
2926      if test -z "$toBeIgnored" ; then
2927        echo    " \\" >> $MAKEFILE
2928        printf " $i" >> $MAKEFILE
2929      fi
2930    done
2931    echo >> $MAKEFILE
2932    rm -f adSrcFiles.tmp
2933    
2934    cat >>$MAKEFILE <<EOF
2935    
2936    adAll: \$(EXE_AD)
2937    .PHONY: adAll
2938    
2939    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
2940    
2941    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
2942    
2943    .PHONY: adDepend
2944    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
2945            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2946            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2947            -rm -f makedepend.out
2948    
2949    OPENAD_SUPPORT_F90_SRC_FILES = \
2950    w2f__types.F90 \
2951    OAD_active.F90 \
2952    OAD_cp.F90 \
2953    OAD_rev.F90 \
2954    OAD_tape.F90        
2955    
2956    OPENAD_SUPPORT_C_SRC_FILES = \
2957    iaddr.c \
2958    timeRatio.c
2959    
2960    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
2961            cat \$^ > \$@
2962    
2963    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
2964            cat \$^ > \$@
2965    
2966    f95_test.out: f95_test_mods.f90 f95_test.f90
2967            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
2968            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
2969    
2970    # the file included below is created by the
2971    # postProcessor and its inclusion sets the
2972    # variable POSTPROCESSEDFILES
2973    # used below. Because the file is made during
2974    # make it won't be read until the second (recursive)
2975    # invocation in the rule below
2976    -include postProcess.make
2977    
2978    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)
2979    
2980    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
2981    
2982    postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)
2983    ifeq (\$(MAKELEVEL),0)
2984            \$(MAKE) adAll
2985    else
2986            touch \$@
2987    endif
2988    
2989    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)
2990    ifeq (\$(MAKELEVEL),1)
2991            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
2992    else
2993            touch \$@
2994    endif
2995    
2996    # makefile debug rule
2997    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
2998    .PHONY: openad
2999    
3000    # create the module files
3001    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3002            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3003    
3004    # create the header files
3005    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3006            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3007    
3008    # change everybody else to use the new module files:
3009    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3010            ../OAD_support/cb2mUseModules.bash $< ${MPI}
3011    
3012    # makefile debug rule
3013    small_f: \$(CB2M_F90_PP_SRC_FILES)
3014    .PHONY: small_f
3015    
3016    ad_output.txt: \$(EXE_AD)
3017            @printf 'linking data files ... '
3018            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3019            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3020            @printf 'running ... '
3021            @./\$(EXE_AD) > \$@
3022    
3023    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3024    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3025            cat \$^ > \$@
3026    
3027    # strip all comments and blanks to reduce
3028    # the file size in order to reduce perl's memory requirements
3029    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3030            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3031    
3032    # mfef90 preprocessing
3033    # expand statement functions
3034    # expose mfef90 specific substring handling
3035    # add the w2f__types module
3036    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3037            ./mfef90 -r8 -z -F -N132 \$<
3038            mv \$<.B \$(basename \$<).B
3039            ./whirl2f -openad \$(basename \$<).B
3040            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3041    
3042    # canonicalizer
3043    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3044            ./preProcess.py --timing -H -S \$< -o \$@
3045    
3046    # F -> WHIRL
3047    # note that the canonicalized version cuts off at col 72
3048    # doing this also for string constants which is ok as long
3049    # as we are in fixed mode and cut of exactly there.
3050    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3051    # characters respectively.
3052    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3053            ./mfef90 -r8 -z -F \$<
3054            mv \$<.B \$@
3055    
3056    # WHIRL -> XAIF
3057    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3058            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3059    
3060    # XAIF -> XAIF'
3061    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3062            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3063    
3064    # XAIF' -> WHIRL'
3065    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3066            ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<
3067    
3068    # WHIRL' -> F'
3069    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3070            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3071    
3072    # insert template directives
3073    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3074            ../OAD_support/insertTemplateDir.bash \$< \$@
3075    
3076    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3077    # postprocess F'
3078    postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3079            # the target is a placeholder to signal execution of the rule
3080            touch \$@
3081            # this step also creates the file postProcess.make but we cannot
3082            # name it as the target or else make will try to remake it for
3083            # the include directive above for any rule, e.g. make clean
3084            ./postProcess.py --progress --timing -m r -i ../OAD_support/ad_inline.f --width 4 \$<
3085    
3086    # setup some links
3087    %.xsd:
3088            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3089    
3090    mfef90:
3091            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3092    
3093    # link the support files:
3094    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3095            \$(LN) ../OAD_support/\$@ .
3096    
3097    whirl2xaif xaif2whirl:
3098            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3099    
3100    preProcess.py postProcess.py:
3101            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3102    
3103    whirl2f whirl2f_be:
3104            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3105    
3106    oadDriver:
3107            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3108    
3109    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)
3110    
3111    # ============ end OpenAD specific section ==============
3112    
3113  EOF  EOF
3114    
3115    fi
3116    
3117    #=========================================
3118    
3119  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3120      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3121  fi  fi

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