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revision 1.148 by ce107, Fri May 5 20:04:43 2006 UTC revision 1.192 by jmc, Wed Apr 22 21:03:52 2009 UTC
# Line 325  find_possible_configs()  { Line 325  find_possible_configs()  {
325    
326      #================================================================      #================================================================
327      #  look for possible C compilers      #  look for possible C compilers
328      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329      p_CC=      p_CC=
330      for c in $tmp ; do      for c in $tmp ; do
331          rm -f ./genmake_hello.c  ./genmake_hello          rm -f ./genmake_hello.c  ./genmake_hello
# Line 364  EOF Line 364  EOF
364    
365      #================================================================      #================================================================
366      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
367      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 gfortran"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 601  Usage: "$0" [OPTIONS] Line 601  Usage: "$0" [OPTIONS]
601    
602      -gsl | --gsl      -gsl | --gsl
603            Use GSL to control floating point rounding and precision            Use GSL to control floating point rounding and precision
604        -devel | --devel
605              Add additional warning and debugging flags for development
606    
607      -mpi | --mpi      -mpi | --mpi
608            Include MPI header files and link to MPI libraries            Include MPI header files and link to MPI libraries
# Line 609  Usage: "$0" [OPTIONS] Line 611  Usage: "$0" [OPTIONS]
611            set to PATH. i.e. Include files from \$PATH/include, link to libraries            set to PATH. i.e. Include files from \$PATH/include, link to libraries
612            from \$PATH/lib and use binaries from \$PATH/bin.            from \$PATH/lib and use binaries from \$PATH/bin.
613    
614        -omp | --omp
615              Activate OpenMP code + use Compiler option OMPFLAG
616        -omp=OMPFLAG | --omp=OMPFLAG
617              Activate OpenMP code + use Compiler option OMPFLAG
618    
619      -es | --es | -embed-source | --embed-source      -es | --es | -embed-source | --embed-source
620            Embed a tarball containing the full source code            Embed a tarball containing the full source code
621            (including the Makefile, etc.) used to build the            (including the Makefile, etc.) used to build the
# Line 744  void FC_NAMEMANGLE(cloc) ( double *curti Line 751  void FC_NAMEMANGLE(cloc) ( double *curti
751   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
752  }  }
753  EOF  EOF
754      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
755        echo $COMM >> genmake_warnings
756        $COMM >> genmake_warnings 2>&1
757      RET_C=$?      RET_C=$?
758      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
759        program hello        program hello
# Line 754  EOF Line 763  EOF
763        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
764        end        end
765  EOF  EOF
766      $FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
767        echo $COMM >> genmake_warnings
768        $COMM >> genmake_warnings 2>&1
769      RET_F=$?      RET_F=$?
770      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
771      RETVAL=$?      RETVAL=$?
# Line 767  EOF Line 778  EOF
778    
779    
780  check_HAVE_SIGREG()  {  check_HAVE_SIGREG()  {
781        if test ! "x$HAVE_SIGREG" = x ; then
782            return
783        fi
784      get_fortran_c_namemangling      get_fortran_c_namemangling
785      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
786  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 798  void FC_NAMEMANGLE(sigreg) (int * aip) Line 812  void FC_NAMEMANGLE(sigreg) (int * aip)
812      return;      return;
813  }  }
814  EOF  EOF
815      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
816        echo $COMM >> genmake_warnings
817        $COMM >> genmake_warnings 2>&1
818      RET_C=$?      RET_C=$?
819      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
820        program hello        program hello
# Line 824  EOF Line 840  EOF
840    
841    
842  check_HAVE_SETRLSTK()  {  check_HAVE_SETRLSTK()  {
843        if test "x$HAVE_SETRLSTK" = xt ; then
844            DEFINES="$DEFINES -DHAVE_SETRLSTK"
845            return
846        fi  
847        if test ! "x$HAVE_SETRLSTK" = x ; then
848            return
849        fi
850      get_fortran_c_namemangling      get_fortran_c_namemangling
851      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
852  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 839  void FC_NAMEMANGLE(setrlstk) () Line 862  void FC_NAMEMANGLE(setrlstk) ()
862      return;      return;
863  }  }
864  EOF  EOF
865      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
866        echo $COMM >> genmake_warnings
867        $COMM >> genmake_warnings 2>&1
868      RET_C=$?      RET_C=$?
869      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
870        program hello        program hello
# Line 883  void FC_NAMEMANGLE(tfsize) ( int *nbyte Line 908  void FC_NAMEMANGLE(tfsize) ( int *nbyte
908          *nbyte = -1;          *nbyte = -1;
909  }  }
910  EOF  EOF
911      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
912        echo $COMM >> genmake_warnings
913        $COMM >> genmake_tc.log 2>&1
914      RET_C=$?      RET_C=$?
915      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
916        program hello        program hello
# Line 934  EOF Line 961  EOF
961      cat genmake_tnc.F >> genmake_tnc.log      cat genmake_tnc.F >> genmake_tnc.log
962      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
963      RET_CPP=f      RET_CPP=f
964      COMM="$CPP $DEFINES $INCLUDES genmake_tnc.F"      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
965      echo "$COMM" >> genmake_tnc.log      echo "$COMM" >> genmake_tnc.log
966      $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t      eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
967      if test "x$RET_CPP" = xf ; then      if test "x$RET_CPP" = xf ; then
968          echo "  WARNING: CPP failed to pre-process the netcdf test." \          echo "  WARNING: CPP failed to pre-process the netcdf test." \
969              >> genmake_tnc.log              >> genmake_tnc.log
# Line 944  EOF Line 971  EOF
971              >> genmake_tnc.log              >> genmake_tnc.log
972      fi      fi
973      echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log      echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
974      echo "  &&  $LINK -o genmake_tnc.o $LIBS" >> genmake_tnc.log      echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
975      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
976          &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
977      RET_COMPILE=$?      RET_COMPILE=$?
978      cat genmake_tnc.log >> genmake_warnings      cat genmake_tnc.log >> genmake_warnings
979    
# Line 962  EOF Line 989  EOF
989      else      else
990          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
991          echo "try again with added '-lnetcdf'" > genmake_tnc.log          echo "try again with added '-lnetcdf'" > genmake_tnc.log
992          echo "$CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS \ " >> genmake_tnc.log          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
993          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
994          echo " &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
995          $CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS 2>/dev/null  \          cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
996              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
997              &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
998          RET_COMPILE=$?          RET_COMPILE=$?
999          cat genmake_tnc.log >> genmake_warnings          cat genmake_tnc.log >> genmake_warnings
1000          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
1001              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
1002              HAVE_NETCDF=t              HAVE_NETCDF=t
1003            else
1004            # try again with "-lnetcdff" added to the libs
1005                echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1006                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1007                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1008                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1009                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1010                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1011                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1012                RET_COMPILE=$?
1013                cat genmake_tnc.log >> genmake_warnings
1014                if test "x$RET_COMPILE" = x0 ; then
1015                    LIBS="$LIBS -lnetcdff -lnetcdf"
1016                    HAVE_NETCDF=t
1017                fi
1018          fi          fi
1019      fi      fi
1020      rm -f genmake_tnc*      rm -f genmake_tnc*
# Line 1008  OPTFILE= Line 1050  OPTFILE=
1050  INCLUDES="-I. $INCLUDES"  INCLUDES="-I. $INCLUDES"
1051  FFLAGS=  FFLAGS=
1052  FOPTIM=  FOPTIM=
1053    FEXTRAFLAGS=
1054    USE_EXTENDED_SRC=
1055    EXTENDED_SRC_FLAG=
1056  CFLAGS=  CFLAGS=
1057  KFLAGS1=  KFLAGS1=
1058  KFLAGS2=  KFLAGS2=
# Line 1018  NOOPTFILES= Line 1063  NOOPTFILES=
1063  NOOPTFLAGS=  NOOPTFLAGS=
1064  MPI=  MPI=
1065  MPIPATH=  MPIPATH=
1066    OMP=
1067    OMPFLAG=
1068  TS=  TS=
1069  PAPIS=  PAPIS=
1070  PCLS=  PCLS=
# Line 1026  PAPI= Line 1073  PAPI=
1073  PCL=  PCL=
1074  HPMT=  HPMT=
1075  GSL=  GSL=
1076    DEVEL=
1077  HAVE_TEST_L=  HAVE_TEST_L=
1078    
1079  # DEFINES checked by test compilation or command-line  # DEFINES checked by test compilation or command-line
# Line 1033  HAVE_SYSTEM= Line 1081  HAVE_SYSTEM=
1081  HAVE_FDATE=  HAVE_FDATE=
1082  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1083  HAVE_CLOC=  HAVE_CLOC=
1084  HAVE_SETRLSTK=  # HAVE_SETRLSTK=
1085  HAVE_STAT=  HAVE_STAT=
1086  HAVE_NETCDF=  HAVE_NETCDF=
1087  HAVE_ETIME=  HAVE_ETIME=
# Line 1084  TAMC_EXTRA= Line 1132  TAMC_EXTRA=
1132    
1133  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1134  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1135  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"
1136    
1137  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1138  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1139  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1140  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1141  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
# Line 1114  EOF Line 1162  EOF
1162    
1163  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1164  gm_local="genmake_local"  gm_local="genmake_local"
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
1165  printf "  getting local config information:  "  printf "  getting local config information:  "
1166  if test -f $gm_local ; then  if test -f $gm_local ; then
1167      echo "using $gm_local"      echo "using $gm_local"
# Line 1131  else Line 1173  else
1173  fi  fi
1174    
1175  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1176  #parse_options  #parse_options
1177  ac_prev=  ac_prev=
1178  for ac_option in "$@" ; do  for ac_option in "$@" ; do
# Line 1282  for ac_option in "$@" ; do Line 1315  for ac_option in "$@" ; do
1315          -gsl | --gsl)          -gsl | --gsl)
1316              GSL=true ;;              GSL=true ;;
1317    
1318            -devel | --devel)
1319                DEVEL=true ;;
1320    
1321          -mpi | --mpi)          -mpi | --mpi)
1322              MPI=true ;;              MPI=true ;;
1323          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1324              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1325              MPI=true ;;              MPI=true ;;
1326                    
1327  #       -jam | --jam)          -omp | --omp)
1328  #           JAM=1 ;;              OMP=true ;;
1329  #       -nojam | --nojam)          -omp=* | --omp=*)
1330  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1331                OMP=true ;;
1332                    
1333          -ds | --ds)          -ds | --ds)
1334              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 1330  done Line 1367  done
1367  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1368      echo      echo
1369      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1370      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1371      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1372      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/devel_HOWTO/"
1373      echo      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1374      echo "  for directions on how to setup and use the new \"genmake2\" input"      echo "WARNING: ignore \"./.genmakerc\" and continue."
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
1375      echo      echo
1376  fi  fi
1377    
1378  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
1379  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1380      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1381      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1382          ROOTDIR=".."          ROOTDIR=".."
1383      else      else
1384          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
# Line 1367  if test ! -d ${ROOTDIR} ; then Line 1403  if test ! -d ${ROOTDIR} ; then
1403  fi  fi
1404    
1405  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1406  if test -f "${ROOTDIR}/doc/tag-index" ; then  version_file="${ROOTDIR}/doc/tag-index"
1407      THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`  if test -f $version_file ; then
1408        THISVER=`grep '^checkpoint' $version_file | head -1`
1409    #-  remove ./BUILD_INFO.h file if older than version_file
1410        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1411            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1412            rm -f ./BUILD_INFO.h
1413        fi
1414  fi  fi
1415    
1416  if test "x$MAKEFILE" = x ; then  if test "x$MAKEFILE" = x ; then
# Line 1524  if test ! "x$MPI" = x ; then Line 1566  if test ! "x$MPI" = x ; then
1566        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1567        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1568  fi  fi
1569    if test ! "x$OMP" = x ; then
1570          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1571          FFLAGS="$FFLAGS $OMPFLAG"
1572          F90FLAGS="$F90FLAGS $OMPFLAG"
1573          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1574    fi
1575    
1576  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1577        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
# Line 1532  if test ! "x$TS" = x ; then Line 1580  if test ! "x$TS" = x ; then
1580        else        else
1581              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1582        fi        fi
1583          PACKAGES="$PACKAGES showflops"
1584  fi  fi
1585  if test ! "x$PAPIS" = x ; then  if test ! "x$PAPIS" = x ; then
1586        echo "  Turning on PAPI flop summary per timestep"        echo "  Turning on PAPI flop summary per timestep"
# Line 1543  if test ! "x$PAPIS" = x ; then Line 1592  if test ! "x$PAPIS" = x ; then
1592        fi        fi
1593        INCLUDES="$INCLUDES $PAPIINC"        INCLUDES="$INCLUDES $PAPIINC"
1594        LIBS="$LIBS $PAPILIB"        LIBS="$LIBS $PAPILIB"
1595          PACKAGES="$PACKAGES showflops"
1596  fi  fi
1597  if test ! "x$PCLS" = x ; then  if test ! "x$PCLS" = x ; then
1598        echo "  Turning on PCL counter summary per timestep"        echo "  Turning on PCL counter summary per timestep"
# Line 1554  if test ! "x$PCLS" = x ; then Line 1604  if test ! "x$PCLS" = x ; then
1604        fi        fi
1605        INCLUDES="$INCLUDES $PCLINC"        INCLUDES="$INCLUDES $PCLINC"
1606        LIBS="$LIBS $PCLLIB"        LIBS="$LIBS $PCLLIB"
1607          PACKAGES="$PACKAGES showflops"
1608  fi  fi
1609  if test ! "x$PAPI" = x ; then  if test ! "x$PAPI" = x ; then
1610        if test ! "x$PAPIS" = x ; then        if test ! "x$PAPIS" = x ; then
# Line 1602  if test ! "x$GSL" = x ; then Line 1653  if test ! "x$GSL" = x ; then
1653        INCLUDES="$INCLUDES $GSLINC"        INCLUDES="$INCLUDES $GSLINC"
1654        LIBS="$LIBS $GSLLIB"        LIBS="$LIBS $GSLLIB"
1655  fi  fi
1656    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1657    if test ! "x$USE_EXTENDED_SRC" = x ; then
1658          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1659          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1660    fi
1661    
1662  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1663  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
# Line 1681  rm -f genmake_t* Line 1737  rm -f genmake_t*
1737    
1738  printf "  Can we unlimit the stack size using $FC...  "  printf "  Can we unlimit the stack size using $FC...  "
1739  check_HAVE_SETRLSTK  check_HAVE_SETRLSTK
1740  if test "x$HAVE_SETRLSTK" != x ; then  if test "x$HAVE_SETRLSTK" = xt ; then
1741      echo "yes"      echo "yes"
1742  else  else
1743      echo "no"      echo "no"
# Line 1690  rm -f genmake_t* Line 1746  rm -f genmake_t*
1746    
1747  printf "  Can we register a signal handler using $FC...  "  printf "  Can we register a signal handler using $FC...  "
1748  check_HAVE_SIGREG  check_HAVE_SIGREG
1749  if test "x$HAVE_SIGREG" != x ; then  if test "x$HAVE_SIGREG" = xt ; then
1750      echo "yes"      echo "yes"
1751  else  else
1752      echo "no"      echo "no"
# Line 1724  fi Line 1780  fi
1780    
1781    
1782  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1783  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1784  for d in $MODS ; do  for d in $MODS ; do
1785      if test ! -d $d ; then      if test ! -d $d ; then
1786          echo          echo
1787          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1788          exit 1          exit 1
1789      else      else
1790          printf " $d"          printf "$d "
1791          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1792          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1793      fi      fi
# Line 1808  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1864  if test -r $ROOTDIR"/eesupp/src/Makefile
1864      fi      fi
1865  fi  fi
1866    
1867  #same for exch2  #same for pkg/exch2 and pkg/regrid
1868  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
1869      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1870      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
1871      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1
1872      if test "x${RETVAL}" = x0 ; then          RETVAL=$?
1873          rm -f make_exch2.errors          if test "x${RETVAL}" = x0 ; then
1874      else              rm -f make_${pdir}.errors
1875          echo "Error: problem encountered while building source files in exch2:"          else
1876          cat make_exch2.errors 1>&2              echo "Error: problem encountered while building source files in pkg/${pdir}:"
1877          exit 1              cat make_${pdir}.errors 1>&2
1878                exit 1
1879            fi
1880      fi      fi
1881  fi  done
1882    
1883  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1884  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
# Line 1931  done Line 1989  done
1989  rm -f ./.tmp_pack  rm -f ./.tmp_pack
1990  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1991    
1992  #  Check availability of NetCDF and then either build the MNC template  #  Check for package MNC: if NetCDF is available, then build the MNC
1993  #  files or delete mnc from the list of available packages.  #  template files ; otherwise, delete mnc from the list of packages.
1994  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1995  RETVAL=$?  RETVAL=$?
1996  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
# Line 1966  EOF Line 2024  EOF
2024      fi      fi
2025  fi  fi
2026    
2027    #  Check for package PROFILES: if NetCDF is not available,
2028    #  then delete profiles from the list of available packages.
2029    echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1
2030    RETVAL=$?
2031    if test "x$RETVAL" = x0 ; then
2032        if test "x$HAVE_NETCDF" != xt ; then
2033            cat <<EOF
2034    
2035    *********************************************************************
2036    WARNING: the "profiles" package was enabled but tests failed to
2037      compile NetCDF applications.  Please check that:
2038    
2039      1) NetCDF is correctly installed for this compiler and
2040      2) the LIBS variable (within the "optfile") specifies the correct
2041           NetCDF library to link against.
2042    
2043      Due to this failure, the "profiles" package is now DISABLED.
2044    *********************************************************************
2045    
2046    EOF
2047            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2048            DISABLE="$DISABLE profiles"
2049        fi
2050    fi
2051    
2052  echo "  applying package dependency rules"  echo "  applying package dependency rules"
2053  ck=  ck=
2054  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
2055      i=0      i=0
2056      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2057      rtot=$nname      rtot=$nname
2058      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2059    
2060          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2061          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 2006  while test "x$ck" != xtt ; do Line 2089  while test "x$ck" != xtt ; do
2089    
2090          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2091          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2092                #echo "   " $pname ": need to add :" $dname
2093              in_dis="f"              in_dis="f"
2094              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2095                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 2150  fi Line 2234  fi
2234    
2235  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2236  #  compiler.  #  compiler.
2237  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2238      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2239  fi  fi
2240  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2241  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2242      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2243      for j in $list_files ; do      for j in $list_files ; do
2244          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2245      done      done
2246  done  done
2247  if test ! "x"$FS = "x.f" ; then  if test ! "x"$FS = "x.f" ; then
2248      cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f      cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2249      mv -f ad_files_f ad_files      mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2250  fi  fi
2251    
2252  echo  echo
# Line 2195  if test ! "x$DIVA" = x ; then Line 2279  if test ! "x$DIVA" = x ; then
2279          perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h          perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2280      else      else
2281          echo " We cannot create a copy of mpif.h!"          echo " We cannot create a copy of mpif.h!"
2282          exit -1  #       exit -1
2283      fi      fi
2284  fi  fi
2285    
# Line 2220  if test ! -r ".links.tmp/foo" ; then Line 2304  if test ! -r ".links.tmp/foo" ; then
2304      exit 1      exit 1
2305  fi  fi
2306  rm -f .links.tmp/foo  rm -f .links.tmp/foo
2307    
2308    if test "x$OPENAD" != x ; then
2309        OAD_DONT_COMPILE="/dev/null"
2310        OAD_DONT_TRANSFORM="/dev/null"
2311        OAD_KEEP_ORIGINAL="/dev/null"
2312        OAD_CB2M_FILES="/dev/null"
2313        echo "  looking for dontCompile file:  "
2314        for i in "." $MODS ; do
2315            if test -r $i"/dontCompile" ; then
2316                OAD_DONT_COMPILE=$i"/dontCompile"
2317                echo "     found $OAD_DONT_COMPILE"
2318                break
2319            fi
2320        done
2321        echo "  looking for dontTransform file:  "
2322        for i in "." $MODS ; do
2323            if test -r $i"/dontTransform" ; then
2324                OAD_DONT_TRANSFORM=$i"/dontTransform"
2325                echo "     found $OAD_DONT_TRANSFORM"
2326                break
2327            fi
2328        done
2329        echo "  looking for keepOriginal file:  "
2330        for i in "." $MODS ; do
2331            if test -r $i"/keepOriginal" ; then
2332                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2333                echo "     found $OAD_KEEP_ORIGINAL"
2334                break
2335            fi
2336        done
2337        echo "  looking for cb2mFiles:  "
2338        for i in "." $MODS ; do
2339            if test -r $i"/cb2mFiles" ; then
2340                OAD_CB2M_FILES=$i"/cb2mFiles"
2341                echo "     found $OAD_CB2M_FILES"
2342                break
2343            fi
2344        done
2345        echo "   OpenAD exceptions:  "
2346    fi
2347    
2348  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2349  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2350  printf 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2351  printf 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2352  printf 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2353  printf 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2354  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2355    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2356  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2357  for d in $alldirs ; do  for d in $alldirs ; do
2358      deplist=      deplist=
2359      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2360      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2361        if test "x$OPENAD" != x ; then
2362            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2363        fi
2364      for sf in $sfiles ; do      for sf in $sfiles ; do
2365          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2366              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
# Line 2266  for d in $alldirs ; do Line 2395  for d in $alldirs ; do
2395                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2396                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2397                      case $extn in                      case $extn in
2398                          F)                        F)
2399                              echo    " \\"  >> srclist.inc                          echo    " \\"  >> F77srclist.tmp
2400                              printf " $sf" >> srclist.inc                          printf " $sf" >> F77srclist.tmp
2401                              ;;                          if test "x$OPENAD" != x ; then
2402                          F90)                              basename=${sf%%.F}
2403                              echo    " \\"  >> f90srclist.inc                              isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2404                              printf " $sf" >> f90srclist.inc                              if test -z "$isAD" ; then
2405                              ;;                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2406                          c)                                  if test -z "$toBeIgnored" ; then
2407                              echo    " \\"  >> csrclist.inc                                      echo    " \\"  >> nonADF77srclist.tmp
2408                              printf " $sf" >> csrclist.inc                                      printf " $sf" >> nonADF77srclist.tmp
2409                              ;;                                  else
2410                          h)                                      echo "    not to be compiled   :  $sf"
2411                              echo    " \\"  >> hlist.inc                                  fi
2412                              printf " $sf" >> hlist.inc                              else # file is initially listed as an AD file we want to exclude it
2413                              ;;                                   # or we want to retain the untransformed version
2414                          flow)                                  notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2415                              echo    " \\"  >> ad_flow_files.inc                                  untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2416                              printf " $sf" >> ad_flow_files.inc                                  if test -n "$notToBeTransformed"; then
2417                              ;;                                      echo "    not to be transformed:  $sf"
2418                      esac                                  fi
2419                  fi                                  if test -n "$untransformedVersionToBeKept" ; then
2420                                        echo "    original to be kept  :  $sf"
2421                                    fi    
2422                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2423                                        echo    " \\"  >> nonADF77srclist.tmp
2424                                        printf " $sf" >> nonADF77srclist.tmp
2425                                    fi
2426                                fi
2427                            fi
2428                            ;;
2429                        F90)
2430                            echo    " \\"  >> F90srclist.tmp
2431                            printf " $sf" >> F90srclist.tmp
2432                            ;;
2433                        c)
2434                            echo    " \\"  >> csrclist.tmp
2435                            printf " $sf" >> csrclist.tmp
2436                            ;;
2437                        h)
2438                            echo    " \\"  >> hsrclist.tmp
2439                            printf " $sf" >> hsrclist.tmp
2440                            ;;
2441                        flow)
2442                            echo    " \\"  >> ad_flow_files.tmp
2443                            printf " $sf" >> ad_flow_files.tmp
2444                            ;;
2445                       esac
2446                    fi
2447              fi              fi
2448          fi          fi
2449      done      done
2450      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2451          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2452            echo "" >> srclinks.tmp
2453          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2454          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2455          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2456    # This may happen when make thinks that a header file has to be "remade"
2457    # because a module it depends on has changed.  In this case we do nothing.
2458            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2459          fi
2460      fi      fi
2461  done  done
2462  rm -rf .links.tmp  rm -rf .links.tmp
2463  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2464  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2465  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2466  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2467  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2468    echo "" >> ad_flow_files.tmp
2469    
2470    CMDLINE=$0
2471    for xx in "$@" ; do nw=`echo $xx | wc -w`
2472        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2473                            else CMDLINE="$CMDLINE '$xx'" ; fi
2474    done
2475    
2476  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2477      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
# Line 2314  echo "#    $MACHINE" >> $MAKEFILE Line 2482  echo "#    $MACHINE" >> $MAKEFILE
2482  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2483  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2484  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2485  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2486  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2487  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2488    
# Line 2371  else Line 2539  else
2539      echo "EMBEDDED_FILES = " >>$MAKEFILE      echo "EMBEDDED_FILES = " >>$MAKEFILE
2540  fi  fi
2541    
 #  Note: figure out some way to add Hyades JAM libraries here  
2542  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2543  # Unix ln (link)  # Unix ln (link)
2544  LN = ${LN}  LN = ${LN}
# Line 2398  INCLUDES = ${INCLUDES} Line 2565  INCLUDES = ${INCLUDES}
2565  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2566  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2567  # Optim./debug for FC  # Optim./debug for FC
2568  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2569  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2570  # Optim./debug for FC  # Optim./debug for FC
2571  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2572  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2573    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2574  # Flags for CC  # Flags for CC
2575  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2576  # Files that should not be optimized  # Files that should not be optimized
# Line 2415  MAKEFILE=${MAKEFILE} Line 2583  MAKEFILE=${MAKEFILE}
2583    
2584  EOF  EOF
2585    
2586  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2587  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2588  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2589  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2590  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2591    cat ad_flow_files.tmp   >> $MAKEFILE
2592    
2593    rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2594    
2595  echo >> $MAKEFILE  echo >> $MAKEFILE
2596  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  
2597  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE  # add definitions for preprocessed sources
2598  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  # and note that not all systems allow case sensitive extensions
2599    # hence the $FS and $FS90 here.
2600    # for fixed format f90 files we use ff90 or FF90 resp
2601    # but these are not expected to be the original source files
2602    
2603    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2604    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2605    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2606    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2607  echo >> $MAKEFILE  echo >> $MAKEFILE
2608  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2609  echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
 rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
 rm -f ad_flow_files.inc  
2610    
2611  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2612    
2613  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2614  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2615          @echo Creating \$@ ...          @echo Creating \$@ ...
2616          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2617  depend:  depend:
2618          @make links          @make links
2619          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2620          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2621          -rm -f makedepend.out          -rm -f makedepend.out
2622    
# Line 2446  lib: libmitgcmuv.a Line 2624  lib: libmitgcmuv.a
2624    
2625  libmitgcmuv.a: \$(OBJFILES)  libmitgcmuv.a: \$(OBJFILES)
2626          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
2627            ar d   libmitgcmuv.a main.o
2628    
2629  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2630    
2631  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2632    
2633  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2634          @printf 'running ... '          @printf 'running ... '
2635          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2636    
2637  clean:  clean:
2638          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2639            -rm -rf *.o
2640            -rm -rf *.$FS *.flowdir
2641            -rm -rf *.f$FS90 *_mod.h *_mod.F90 *.FF90 *.mod-whirl ad_input*
2642            -rm -rf temp.sed
2643  Clean:  Clean:
2644          @make clean          @make clean
2645          @make cleanlinks          @make cleanlinks
2646          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES)
2647          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log f90mkdepend.log *.bak
2648            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2649  CLEAN:  CLEAN:
2650          @make Clean          @make Clean
2651          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2652          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2653          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2654          -rm -f \$(EXECUTABLE) *.txt STD* *diagnostics.log datetime          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2655            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2656          -rm -rf mnc_test_*          -rm -rf mnc_test_*
2657    
2658  #eh3 Makefile: makefile  #eh3 Makefile: makefile
# Line 2476  makefile: Line 2661  makefile:
2661  cleanlinks:  cleanlinks:
2662          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2663    
2664  # Special targets (SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2665  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2666          @echo Creating \$@ ...          @echo Creating \$@ ...
2667          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
# Line 2501  if test "x$EMBED_SRC" = xt ; then Line 2686  if test "x$EMBED_SRC" = xt ; then
2686    
2687  decode_files.o : EMBEDDED_FILES.h  decode_files.o : EMBEDDED_FILES.h
2688    
2689  ##  \$(F77FILES)  ##  \$(F77_PP_SRC_FILES)
2690  all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile  all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2691          @echo Creating \$@ ...          @echo Creating \$@ ...
2692          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2693          -rm -f all_fF.tar.gz          -rm -f all_fF.tar.gz
2694          -gzip all_fF.tar          -gzip all_fF.tar
2695    
# Line 2528  cat >>$MAKEFILE <<EOF Line 2713  cat >>$MAKEFILE <<EOF
2713          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2714  .F90.$FS90:  .F90.$FS90:
2715          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2716    .FF90.f$FS90:
2717            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2718  .$FS90.o:  .$FS90.o:
2719          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2720    .f$FS90.o:
2721            cp \$< \$(basename  \$<).f90
2722            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2723  .c.o:  .c.o:
2724          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2725    .flow.flowdir:
2726            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2727    
2728  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2729  .F.p:  .F.p:
# Line 2539  cat >>$MAKEFILE <<EOF Line 2731  cat >>$MAKEFILE <<EOF
2731  .p.$FS:  .p.$FS:
2732          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2733    
2734    EOF
2735    
2736  #=========================================  #=========================================
2737  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2738    #===  for TAMC/TAF  ======================
2739    
2740    if test "x$OPENAD" = x ; then
2741    
2742    cat >>$MAKEFILE <<EOF
2743    
2744  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2745  TAF            = ${TAF}  TAF            = ${TAF}
# Line 2555  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2754  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2754  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2755  for i in $ad_vars ; do  for i in $ad_vars ; do
2756      name=$i      name=$i
2757      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2758      eval $t1      eval $t1
2759      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2760      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2761  done  done
2762    
2763  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2764  echo >> $MAKEFILE  echo >> $MAKEFILE
2765  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2766  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2767  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2768      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2769      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2770  done  done
2771  echo >> $MAKEFILE  echo >> $MAKEFILE
2772  rm -f ad_files  rm -f adSrcFiles.tmp
2773    
2774  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2775    
2776  # ... AD ...  # ... AD ...
2777  adall: ad_taf  adall: \$(EXE_AD)
2778  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
2779  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
2780    
2781  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
2782          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2783          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2784          -rm -f ad_config.template          -rm -f ad_config.template
2785          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2786          @make \$(AD_FLOW_FILES)          @make \$(FLOFILES)
2787          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS          cat \$(FLOFILES) \$(AD_FILES) > ad_input_code.$FS
2788    
2789  ad_taf_output.$FS: ad_input_code.$FS  ad_taf_output.$FS: ad_input_code.$FS
2790          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2791            ls -l ad_input_code_ad.$FS
2792          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2793    
2794  adtafonly:  adtafonly:
2795          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2796            ls -l ad_input_code_ad.$FS
2797          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2798    
2799  ad_taf: ad_taf_output.o \$(OBJFILES)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2800          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2801    
2802  ad_tamc_output.$FS: ad_input_code.$FS  ad_tamc_output.$FS: ad_input_code.$FS
2803          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
# Line 2616  ftlall: ftl_taf Line 2817  ftlall: ftl_taf
2817  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
2818  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
2819    
2820  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2821          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2822          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2823          -rm -f ftl_config.template          -rm -f ftl_config.template
2824          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2825          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2826          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2827    
2828  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_taf_output.$FS: ftl_input_code.$FS
2829          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2830            ls -l ftl_input_code_ftl.$FS
2831          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2832    
2833  ftltafonly:  ftltafonly:
2834          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2835            ls -l ftl_input_code_ftl.$FS
2836          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2837    
2838  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
# Line 2667  svd_touch: Line 2870  svd_touch:
2870          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2871          -rm -f ftl_config.template          -rm -f ftl_config.template
2872    
2873  #=========================================  EOF
2874    
2875    fi
2876    
2877    #===  for OpenAD  ========================
2878    
2879    if test "x$OPENAD" != x ; then
2880    
2881    # ============ begin OpenAD specific section ==============
2882    
2883    cat >>$MAKEFILE <<EOF
2884    
2885    # all the source files linked from the various locations:
2886    ALL_LINKED_FILES= \
2887    \$(F77_SRC_FILES) \
2888    \$(C_SRC_FILES) \
2889    \$(H_SRC_FILES) \
2890    \$(F90_SRC_FILES) \
2891    \$(SPECIAL_FILES)
2892    
2893    ifndef OPENADROOT
2894      \$(error "Error:  environment variable OPENADROOT not defined!")
2895    endif
2896    
2897    ifndef XAIFSCHEMAROOT
2898      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2899    endif
2900    
2901    ifndef XAIFBOOSTERROOT
2902      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2903    endif
2904    
2905    EOF
2906    
2907    echo "  Add the source list for common block to module conversion "
2908    echo >> $MAKEFILE
2909    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2910    for i in `cat ${OAD_CB2M_FILES}` ; do
2911      echo    " \\" >> $MAKEFILE
2912      printf " $i" >> $MAKEFILE
2913    done
2914    echo >> $MAKEFILE
2915    
2916    echo "  Add the source list for AD code generation"
2917    echo >> $MAKEFILE
2918    printf "AD_FILES = " >> $MAKEFILE
2919    for i in `cat ${OAD_CB2M_FILES}` ; do
2920      echo    " \\" >> $MAKEFILE
2921      printf " ${i}_mod.f$FS90" >> $MAKEFILE
2922    done
2923    AD_FILES=`cat adSrcFiles.tmp`
2924    for i in $AD_FILES ; do
2925      basename=${i%%.f}
2926      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
2927      if test -z "$toBeIgnored" ; then
2928        echo    " \\" >> $MAKEFILE
2929        printf " $i" >> $MAKEFILE
2930      fi
2931    done
2932    echo >> $MAKEFILE
2933    rm -f adSrcFiles.tmp
2934    
2935    cat >>$MAKEFILE <<EOF
2936    
2937    adAll: \$(EXE_AD)
2938    .PHONY: adAll
2939    
2940    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
2941    
2942    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
2943    
2944    .PHONY: adDepend
2945    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
2946            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2947            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2948            -rm -f makedepend.out
2949    
2950    OPENAD_SUPPORT_F90_SRC_FILES = \
2951    w2f__types.F90 \
2952    OAD_active.F90 \
2953    OAD_cp.F90 \
2954    OAD_rev.F90 \
2955    OAD_tape.F90        
2956    
2957    OPENAD_SUPPORT_C_SRC_FILES = \
2958    iaddr.c \
2959    timeRatio.c
2960    
2961    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
2962            cat \$^ > \$@
2963    
2964    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
2965            cat \$^ > \$@
2966    
2967    f95_test.out: f95_test_mods.f90 f95_test.f90
2968            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
2969            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
2970    
2971    AD_OBJ_FILES=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) all_mods.xb.x2w.w2f.pp.o  ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.o \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
2972    
2973    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(AD_OBJ_FILES)
2974            @echo Creating \$@ ...
2975            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES) \$(LIBS)
2976    
2977    # makefile debug rule
2978    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
2979    .PHONY: openad
2980    
2981    # create the module files
2982    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
2983            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
2984    
2985    # create the header files
2986    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
2987            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
2988    
2989    # change everybody else to use the new module files:
2990    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
2991            ../OAD_support/cb2mUseModules.bash $< ${MPI}
2992    
2993    # makefile debug rule
2994    small_f: \$(CB2M_F90_PP_SRC_FILES)
2995    .PHONY: small_f
2996    
2997    ad_output.txt: \$(EXE_AD)
2998            @printf 'linking data files ... '
2999            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3000            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3001            @printf 'running ... '
3002            @./\$(EXE_AD) > \$@
3003    
3004    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3005    ad_input_code.f$FS90: ../OAD_support/maxMinDefs.f \$(CB2M_AD_FILES)
3006            cat \$^ > \$@
3007    
3008    # strip all comments and blanks to reduce
3009    # the file size in order to reduce perl's memory requirements
3010    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3011            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3012    
3013    # mfef90 preprocessing
3014    # expand statement functions
3015    # expose mfef90 specific substring handling
3016    # add the w2f__types module
3017    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3018            ./mfef90 -r8 -z -F -N132 \$<
3019            mv \$<.B \$(basename \$<).B
3020            ./whirl2f -openad \$(basename \$<).B
3021            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3022    
3023    # canonicalizer
3024    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3025            ./preProcess.py -H -S \$< -o \$@
3026    
3027    # F -> WHIRL
3028    # note that the canonicalized version cuts off at col 72
3029    # doing this also for string constants which is ok as long
3030    # as we are in fixed mode and cut of exactly there.
3031    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3032    # characters respectively.
3033    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3034            ./mfef90 -r8 -z -F \$<
3035            mv \$<.B \$@
3036    
3037    # WHIRL -> XAIF
3038    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3039            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3040    
3041    # XAIF -> XAIF'
3042    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3043            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3044    
3045    # XAIF' -> WHIRL'
3046    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3047            ./xaif2whirl --debug 1 --structured ad_input_code_sf.w2f.pre.B \$<
3048    
3049    # WHIRL' -> F'
3050    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3051            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3052    
3053    # insert template directives
3054    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3055            ../OAD_support/insertTemplateDir.bash \$< \$@
3056    
3057    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3058    # postprocess F'
3059    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3060            ./postProcess.py -m r -i ../OAD_support/ad_inline.f -o \$@ \$<
3061    
3062    # extract all transformed modules
3063    all_mods.xb.x2w.w2f.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3064            cat \$< | sed -n '/MODULE /,/END MODULE/p' > \$@
3065    
3066    # remove the transformed globals module from the
3067    # transformed ad_input_code file
3068    # and remove for now the duplicate variables
3069    # and fix 2 data statements
3070    ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3071            cat \$< | sed '/MODULE /,/END MODULE/d' | sed '/^      INTEGER(w2f__i4) DOLOOP_UB/d' > \$@
3072    
3073    # setup some links
3074    %.xsd:
3075            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3076    
3077    mfef90:
3078            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3079    
3080    # link the support files:
3081    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3082            \$(LN) ../OAD_support/\$@ .
3083    
3084    whirl2xaif xaif2whirl:
3085            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3086    
3087    preProcess.py postProcess.py:
3088            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3089    
3090    whirl2f whirl2f_be:
3091            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3092    
3093    oadDriver:
3094            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3095    
3096    # ============ end OpenAD specific section ==============
3097    
3098  EOF  EOF
3099    
3100    fi
3101    
3102    #=========================================
3103    
3104  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3105      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3106  fi  fi

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