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revision 1.22 by edhill, Thu Oct 23 04:41:41 2003 UTC revision 1.191 by jmc, Wed Apr 22 19:21:18 2009 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24      if test "x${RETVAL}" = x0 ; then  }
25          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"  
26          exit 99  # Search for particular CPP #cmds associated with MPI
27      fi  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1  test_for_mpi_in_cpp_eeoptions() {
29        cpp_options=$1
30        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38    }
39    
40    # Search for particular string in a file. Return 1 if detected, 0 if not
41    # usage: test_for_string_in_file file string
42    test_for_string_in_file() {
43        file=$1
44        strng=$2
45        grep -i "$strng" $file > /dev/null 2>&1
46      RETVAL=$?      RETVAL=$?
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
49            grep -i "$strng" $file
50          exit 99          exit 99
51      fi      fi
52      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
53  }  }
54    
55  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
# Line 62  expand_pkg_groups() { Line 75  expand_pkg_groups() {
75          done          done
76          PACKAGES=$new_packages          PACKAGES=$new_packages
77          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
78            return $matched
79      else      else
80          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
81      fi      fi
82  }  }
83    
84    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
85    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
86    check_for_broken_Ff()  {
87        #  Do we have defaults for $FS and/or $FS90 ?
88        tfs=f
89        tfs9=f90
90        if test "x$FS" != x ; then
91            tfs="$FS"
92        fi
93        if test "x$FS90" != x ; then
94            tfs9="$FS90"
95        fi
96    
97        #  First check the ability to create a *.F/.f pair.
98        cat <<EOF >> genmake_hello.F
99          program hello
100          write(*,*) 'hi'
101          stop
102          end
103    EOF
104        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
105        RETVAL=$?
106        if test "x$RETVAL" != x0 ; then
107            if test "x$FS" = x ; then
108                FS='for'
109                FS90='fr9'
110                check_for_broken_Ff
111            else
112                cat <<EOF 2>&1
113    ERROR: Your file system cannot distinguish between *.F and *.f files
114      (fails the "cp" test) and this program cannot find a suitable
115      replacement extension.  Please try a different build environment or
116      contact the <MITgcm-support@mitgcm.org> list for help.
117    
118    EOF
119                exit -1
120            fi
121            return
122        fi
123        rm -f genmake_hello.*
124    
125        #  Check the ability of ${MAKE} and ${LN} to use the current set
126        #  of extensions.
127        cat <<EOF >> genmake_hello.F
128          program hello
129          write(*,*) 'hi'
130          stop
131          end
132    EOF
133        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
134        cat <<EOF >> $MAKEFILE
135    .SUFFIXES:
136    .SUFFIXES: .$tfs .F
137    .F.$tfs:
138            $LN \$< \$@
139    EOF
140        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
141        RETVAL=$?
142        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
143            if test "x$FS" = x ; then
144                FS='for'
145                FS90='fr9'
146                check_for_broken_Ff
147            else
148                cat <<EOF 2>&1
149    ERROR: Your file system cannot distinguish between *.F and *.f files
150      (fails the "make/ln" test) and this program cannot find a suitable
151      replacement extension.  Please try a different build environment or
152      contact the <MITgcm-support@mitgcm.org> list for help.
153    
154    EOF
155                exit -1
156                return
157            fi
158        fi
159        rm -f genmake_hello.* $MAKEFILE
160        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
161    
162        #  If we make it here, use the extensions
163        FS=$tfs
164        FS90=$tfs9
165        return
166    }
167    
168    
169    look_for_makedepend()  {
170    
171        #  The "original" makedepend is part of the Imake system that is
172        #  most often distributed with XFree86 or with an XFree86 source
173        #  package.  As a result, many machines (eg. generic Linux) do not
174        #  have a system-default "makedepend" available.  For those
175        #  systems, we have two fall-back options:
176        #
177        #    1) a makedepend implementation shipped with the cyrus-imapd
178        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
179        #
180        #    2) a known-buggy xmakedpend shell script
181        #
182        #  So the choices are, in order:
183        #
184        #    1) use the user-specified program
185        #    2) use a system-wide default
186        #    3) locally build and use the cyrus implementation
187        #    4) fall back to the buggy local xmakedpend script
188        #
189        if test "x${MAKEDEPEND}" = x ; then
190            which makedepend > /dev/null 2>&1
191            RV0=$?
192            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
193            #  echo 'MAKEFILE="'$MAKEFILE'"'
194            cat <<EOF >> $MAKEFILE
195    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
196    #
197    #   Some "makedepend" implementations will die if they cannot
198    #   find a Makefile -- so this file is here to gives them an
199    #   empty one to find and parse.
200    EOF
201            cat <<EOF >> genmake_tc.f
202          program test
203          write(*,*) 'test'
204          stop
205          end
206    EOF
207            makedepend genmake_tc.f > /dev/null 2>&1
208            RV1=$?
209            test -f $MAKEFILE  &&  rm -f $MAKEFILE
210            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
211            if test "x${RV0}${RV1}" = x00 ; then
212                MAKEDEPEND=makedepend
213            else
214                echo "    a system-default makedepend was not found."
215                
216                #  Try to build the cyrus implementation
217                build_cyrus_makedepend
218                RETVAL=$?
219                if test "x$RETVAL" != x0 ; then
220                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
221                fi
222                rm -f ./genmake_cy_md
223            fi
224        else
225            #  echo "MAKEDEPEND=${MAKEDEPEND}"
226            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
227            RETVAL=$?
228            if test x"$RETVAL" = x0 ; then
229                build_cyrus_makedepend
230            fi
231        fi
232    }
233    
234    
235    build_cyrus_makedepend()  {
236        rm -f ./genmake_cy_md
237        (
238            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
239                &&  ./configure > /dev/null 2>&1  \
240                &&  make > /dev/null 2>&1
241            if test -x ./makedepend.exe ; then
242                $LN ./makedepend.exe ./makedepend
243            fi
244            ./makedepend ifparser.c > /dev/null 2>&1  \
245                &&  echo "true"
246        ) > ./genmake_cy_md
247        grep true ./genmake_cy_md > /dev/null 2>&1
248        RETVAL=$?
249        rm -f ./genmake_cy_md
250        if test "x$RETVAL" = x0 ; then
251            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
252            return 0
253        else
254            echo "WARNING: unable to build cyrus-imapd-makedepend"
255            return 1
256        fi
257    }
258    
259    
260    build_embed_encode()
261    {
262        printf "  building the embed-encode utility...  "
263        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265                echo
266                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267                echo
268                EMBED_SRC=f
269                return 1
270            fi
271            clist="cc gcc c89 $CC"
272            for ic in $clist ; do
273                comm="$ic -o encode_files encode_files.c"
274                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275                RETVAL=$?
276                if test "x$RETVAL" = x0 ; then
277                    echo "OK"
278                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279                    return 0
280                fi
281            done
282            echo
283            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
284            echo "      so it has been disabled"
285            echo
286            EMBED_SRC=f
287            return 1
288        fi
289        echo "OK"
290        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291    }
292    
293    
294  # Guess possible config options for this host  # Guess possible config options for this host
295  find_possible_configs()  {  find_possible_configs()  {
296    
297      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
298      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
299      PLATFORM=`echo $tmp2 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
300        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
301        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
302        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
303        PLATFORM=$tmp3
304        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
305      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
306      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
307            
308      echo "test" > test      echo "test" > test
309      ln -s ./test link      ln -s ./test link
# Line 103  find_possible_configs()  { Line 321  find_possible_configs()  {
321          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
322      fi      fi
323    
324      # look for possible fortran compilers      look_for_makedepend
325      tmp="$MITGCM_FC $FC g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"  
326        #================================================================
327        #  look for possible C compilers
328        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329        p_CC=
330        for c in $tmp ; do
331            rm -f ./genmake_hello.c  ./genmake_hello
332            cat >> genmake_hello.c << EOF
333    #include <stdio.h>
334    int main(int argc, char **argv) {
335      printf("Hello!\n");
336      return 0;
337    }
338    EOF
339            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
340            RETVAL=$?
341            if test "x${RETVAL}" = x0 ; then
342                p_CC="$p_CC $c"
343            fi
344        done
345        rm -f ./genmake_hello.c ./genmake_hello
346        if test "x${p_CC}" = x ; then
347            cat 1>&2 <<EOF
348    
349    Error: No C compilers were found in your path.  Please specify one using:
350    
351        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
352        2) the CC or MITGCM_CC environment variables.
353    
354    EOF
355            exit 1
356        else
357            echo "  The possible C compilers found in your path are:"
358            echo "   "$p_CC
359            if test "x$CC" = x ; then
360                CC=`echo $p_CC | $AWK '{print $1}'`
361                echo "  Setting C compiler to: "$CC
362            fi
363        fi
364    
365        #================================================================
366        #  look for possible FORTRAN compilers
367        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 129  Error: No Fortran compilers were found i Line 389  Error: No Fortran compilers were found i
389    
390      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
391      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
392      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
393    
394  EOF  EOF
395          exit 1          exit 1
396      else      else
397          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
398          echo "   "$p_FC          echo "   "$p_FC
         if test "x$FC" = x ; then  
             FC=`echo $p_FC | $AWK '{print $1}'`  
         fi  
399      fi      fi
400    
401      for i in $p_FC ; do      #  Use the first of the compilers found in the current PATH
402          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i      #  that has a correctly-named optfile
403          if test -r $p_OF ; then      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
404              OPTFILE=$p_OF          for i in $p_FC ; do
405              echo "  The options file:  $p_OF"              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
406              echo "    appears to match so we'll use it."              if test -r $OPTFILE ; then
407              break                  echo "  Setting OPTFILE to: "$OPTFILE
408          fi                  break
409      done              fi
410            done
411        fi
412    
413        if test "x$OPTFILE" = x ; then
414            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
415            if test ! -r $OPTFILE ; then
416                 echo "  I looked for the file "$OPTFILE" but did not find it"
417            fi
418        fi
419    #    echo "  The options file:  $p_OF"
420    #    echo "    appears to match so we'll use it."
421    #   for i in $p_FC ; do
422    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
423    #if test -r $p_OF ; then
424    #    OPTFILE=$p_OF
425    #    echo "  The options file:  $p_OF"
426    #    echo "    appears to match so we'll use it."
427    #    break
428    #fi
429    #   done
430      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
431          cat 1>&2 <<EOF          cat 1>&2 <<EOF
432    
# Line 205  get_pdepend_list()  { Line 482  get_pdepend_list()  {
482      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
483          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
484          > ./.pd_tmp          > ./.pd_tmp
485      source ./.pd_tmp      . ./.pd_tmp
486      rm -f ./.pd_tmp      rm -f ./.pd_tmp
487    
488      echo -n "PNAME = "${}      printf "PNAME = "${}
489  }  }
490    
491    
492  #  Explain usage  #  Explain usage
493  usage()  {  usage()  {
494      echo  cat <<EOF
495      echo "Usage: "$0" [OPTIONS]"  
496      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
497      echo    where [OPTIONS] can be:
498      echo "    -help | --help | -h | --h"  
499      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
500      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
501      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
502      echo "    -pdepend NAME | --pdepend NAME"      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
503      echo "      -pdepend=NAME | --pdepend=NAME"        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
504      echo "    -pdefault NAME | --pdefault NAME"            Use "NAME" as the adoptfile.  By default, the file at
505      echo "      -pdefault=NAME | --pdefault=NAME"            "tools/adjoint_options/adjoint_default" will be used.
506      echo "    -make NAME | -m NAME"  
507      echo "      --make=NAME | -m=NAME"      -nooptfile | --nooptfile
508      echo "    -makefile NAME | -mf NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
509      echo "      --makefile=NAME | -mf=NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
510      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"            Use "NAME" as the optfile.  By default, an attempt will be
511      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            made to find an appropriate "standard" optfile in the
512      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"            tools/build_options/ directory.
513      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"  
514      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"      -pdepend NAME | --pdepend NAME
515      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"        -pdepend=NAME | --pdepend=NAME
516      echo "    -disable NAME | --disable NAME"            Get package dependency information from "NAME".
517      echo "      -disable=NAME | --disable=NAME"  
518      echo "    -enable NAME | --enable NAME"      -pdefault NAME | --pdefault NAME
519      echo "      -enable=NAME | --enable=NAME"        -pdefault=NAME | --pdefault=NAME
520      echo "    -standarddirs NAME | --standarddirs NAME"            Get the default package list from "NAME".
521      echo "      -standarddirs=NAME | --standarddirs=NAME"  
522      echo "    -noopt NAME | --noopt NAME"      -make NAME | -m NAME
523      echo "      -noopt=NAME | --noopt=NAME"        --make=NAME | -m=NAME
524  #    echo "    -cpp NAME | --cpp NAME"            Use "NAME" for the MAKE program. The default is "make" but
525  #    echo "      -cpp=NAME | --cpp=NAME"            many platforms, "gmake" is the preferred choice.
526      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"  
527      echo "      -fc=NAME | --fc=NAME"      -makefile NAME | -mf NAME
528      echo "    -[no]ieee | --[no]ieee"        --makefile=NAME | -mf=NAME
529      echo "    -[no]mpi | --[no]mpi"            Call the makefile "NAME".  The default is "Makefile".
530      echo "    -[no]jam | --[no]jam"  
531      echo      -makedepend NAME | -md NAME
532      echo "  and NAME is a string such as:"        --makedepend=NAME | -md=NAME
533      echo            Use "NAME" for the MAKEDEPEND program.
534      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"  
535      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
536      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
537      echo            Specify the location of the MITgcm ROOTDIR as "NAME".
538      echo "  which, depending upon your shell, may need to be single-quoted"            By default, genamke will try to find the location by
539      echo "  if it contains spaces, dashes, or other special characters."            looking in parent directories (up to the 5th parent).
540    
541        -mods NAME | --mods NAME | -mo NAME | --mo NAME
542          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
543              Here, "NAME" specifies a list of directories that are
544              used for additional source code.  Files found in the
545              "mods list" are given preference over files of the same
546              name found elsewhere.
547    
548        -disable NAME | --disable NAME
549          -disable=NAME | --disable=NAME
550              Here "NAME" specifies a list of packages that we don't
551              want to use.  If this violates package dependencies,
552              genamke will exit with an error message.
553    
554        -enable NAME | --enable NAME
555          -enable=NAME | --enable=NAME
556              Here "NAME" specifies a list of packages that we wish
557              to specifically enable.  If this violates package
558              dependencies, genamke will exit with an error message.
559    
560        -standarddirs NAME | --standarddirs NAME
561          -standarddirs=NAME | --standarddirs=NAME
562              Here, "NAME" specifies a list of directories to be
563              used as the "standard" code.
564    
565        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
566          -fc=NAME | --fc=NAME
567              Use "NAME" as the fortran compiler.  By default, genmake
568              will search for a working compiler by trying a list of
569              "usual suspects" such as g77, f77, etc.
570    
571        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
572              Use "NAME" as the C compiler.  By default, genmake
573              will search for a working compiler by trying a list of
574              "usual suspects" such as gcc, c89, cc, etc.
575    
576        -[no]ieee | --[no]ieee
577              Do or don't use IEEE numerics.  Note that this option
578              *only* works if it is supported by the OPTFILE that
579              is being used.
580    
581        -ignoretime | -ignore_time | --ignoretime | --ignore_time
582              Ignore all the "wall clock" routines entirely.  This will
583              not in any way hurt the model results -- it simply means
584              that the code that checks how long the model spends in
585              various routines will give junk values.
586    
587        -ts | --ts
588              Produce timing information per timestep
589        -papis | --papis
590              Produce summary MFlop/s (and IPC) with PAPI per timestep
591        -pcls | --pcls
592              Produce summary MFlop/s etc. with PCL per timestep
593        -foolad | --foolad
594              Fool the AD code generator
595        -papi | --papi
596              Performance analysis with PAPI
597        -pcl | --pcl
598              Performance analysis with PCL
599        -hpmt | --hpmt
600              Performance analysis with the HPM Toolkit
601    
602        -gsl | --gsl
603              Use GSL to control floating point rounding and precision
604        -devel | --devel
605              Add additional warning and debugging flags for development
606    
607        -mpi | --mpi
608              Include MPI header files and link to MPI libraries
609        -mpi=PATH | --mpi=PATH
610              Include MPI header files and link to MPI libraries using MPI_ROOT
611              set to PATH. i.e. Include files from \$PATH/include, link to libraries
612              from \$PATH/lib and use binaries from \$PATH/bin.
613    
614        -omp | --omp
615              Activate OpenMP code + use Compiler option OMPFLAG
616        -omp=OMPFLAG | --omp=OMPFLAG
617              Activate OpenMP code + use Compiler option OMPFLAG
618    
619        -es | --es | -embed-source | --embed-source
620              Embed a tarball containing the full source code
621              (including the Makefile, etc.) used to build the
622              executable [off by default]
623    
624        -bash NAME
625              Explicitly specify the Bourne or BASH shell to use
626    
627      While it is most often a single word, the "NAME" variables specified
628      above can in many cases be a space-delimited string such as:
629    
630        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
631        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
632        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
633    
634      which, depending upon your shell, may need to be single-quoted.
635    
636      For more detailed genmake documentation, please see:
637    
638        http://mitgcm.org/devel_HOWTO/
639    
640    EOF
641    
642      exit 1      exit 1
643  }  }
644    
645  #eh3 # This is the generic configuration.  #  Build a CPP macro to automate calling C routines from FORTRAN
646  #eh3 set LN         = ( 'ln -s' )  get_fortran_c_namemangling()  {
647  #eh3 set CPP        = ( '/lib/cpp -P' )  
648  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
649  #eh3 set KPP        = (  )      if test ! "x$FC_NAMEMANGLE" = x ; then
650  #eh3 set FC         = ( 'f77' )          return 0
651  #eh3 set LINK       = $FC      fi
652  #eh3 set MAKEDEPEND = ( 'makedepend' )  
653  #eh3 set INCLUDES   = ( -I. )      default_nm="#define FC_NAMEMANGLE(X) X ## _"
654  #eh3 set FFLAGS     = (  )      
655  #eh3 set FOPTIM     = (  )      cat > genmake_test.c <<EOF
656  #eh3 set CFLAGS     = (  )  void tcall( char * string ) { tsub( string ); }
657  #eh3 set KFLAGS1    = (  )  EOF
658  #eh3 set KFLAGS2    = (  )      $MAKE genmake_test.o >> genmake_warnings 2>&1
659  #eh3 set LIBS       = (  )      RETVAL=$?
660  #eh3 set KPPFILES   = (  )      if test "x$RETVAL" != x0 ; then
661  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )          FC_NAMEMANGLE=$default_nm
662  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )          cat <<EOF>> genmake_errors
663    
664    WARNING: C test compile fails
665    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
666    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
667    EOF
668            return 1
669        fi
670        c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
671        RETVAL=$?
672        if test "x$RETVAL" != x0 ; then
673            FC_NAMEMANGLE=$default_nm
674            cat <<EOF>> genmake_warnings
675    
676    WARNING: The "nm" command failed.
677    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
678    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
679    EOF
680            return 1
681        fi
682        cat > genmake_tcomp.$FS <<EOF
683          subroutine tcall( string )
684          character*(*) string
685          call tsub( string )
686          end
687    EOF
688        $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
689        RETVAL=$?
690        if test "x$RETVAL" != x0 ; then
691            FC_NAMEMANGLE=$default_nm
692            cat <<EOF>> genmake_warnings
693    
694    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
695    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
696    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
697    EOF
698            return 1
699        fi
700        f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
701        RETVAL=$?
702        if test "x$RETVAL" != x0 ; then
703            FC_NAMEMANGLE=$default_nm
704            cat <<EOF>> genmake_warnings
705    
706    WARNING: The "nm" command failed.
707    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
708    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
709    EOF
710            return 1
711        fi
712    
713        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
714        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
715        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
716        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
717    
718        nmangle="X"
719        if test "x$c_a" != "x$f_a" ; then
720            comm="echo x$f_a | sed -e 's|x$c_a||'"
721            a=`eval $comm`
722            nmangle="$a ## $nmangle"
723        fi
724        if test "x$c_b" != "x$f_b" ; then
725            comm="echo x$f_b | sed -e 's|x$c_b||'"
726            b=`eval $comm`
727            nmangle="$nmangle ## $b"
728        fi
729    
730        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
731    
732        #  cleanup the testing files
733        rm -f genmake_tcomp.* genmake_test.*
734    }
735    
736    
737    check_HAVE_CLOC()  {
738        get_fortran_c_namemangling
739        cat <<EOF > genmake_tc_1.c
740    $FC_NAMEMANGLE
741    #include <stdio.h>
742    #include <stdlib.h>
743    #include <unistd.h>
744    #include <assert.h>
745    #include <sys/time.h>
746    void FC_NAMEMANGLE(cloc) ( double *curtim )
747    {
748     struct timeval tv1;
749     gettimeofday(&tv1 , (void *)NULL );
750     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
751     *curtim = *curtim/1.E6;
752    }
753    EOF
754        COMM="$CC $CFLAGS -c genmake_tc_1.c"
755        echo $COMM >> genmake_warnings
756        $COMM >> genmake_warnings 2>&1
757        RET_C=$?
758        cat <<EOF > genmake_tc_2.$FS
759          program hello
760          REAL*8 wtime
761          external cloc
762          call cloc(wtime)
763          print *," HELLO WORLD", wtime
764          end
765    EOF
766        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
767        echo $COMM >> genmake_warnings
768        $COMM >> genmake_warnings 2>&1
769        RET_F=$?
770        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
771        RETVAL=$?
772        if test "x$RETVAL" = x0 ; then
773            HAVE_CLOC=t
774            DEFINES="$DEFINES -DHAVE_CLOC"
775        fi
776        rm -f genmake_tc*
777    }
778    
779    
780    check_HAVE_SIGREG()  {
781        if test ! "x$HAVE_SIGREG" = x ; then
782            return
783        fi
784        get_fortran_c_namemangling
785        cat <<EOF > genmake_tc_1.c
786    $FC_NAMEMANGLE
787    #include <stdlib.h>
788    #include <stdio.h>
789    #include <signal.h>
790    #include <errno.h>
791    #include <ucontext.h>
792    
793    int * ip;
794    
795    static void killhandler(
796        unsigned int sn, siginfo_t  si, struct ucontext *sc )
797    {
798        *ip = *ip + 1;
799        return;
800    }
801    
802    void FC_NAMEMANGLE(sigreg) (int * aip)
803    {
804        struct sigaction s;
805        ip = aip;
806        s.sa_flags = SA_SIGINFO;
807        s.sa_sigaction = (void *)killhandler;
808        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
809            printf("Sigaction returned error = %d\n", errno);
810            exit(0);
811        }
812        return;
813    }
814    EOF
815        COMM="$CC $CFLAGS -c genmake_tc_1.c"
816        echo $COMM >> genmake_warnings
817        $COMM >> genmake_warnings 2>&1
818        RET_C=$?
819        cat <<EOF > genmake_tc_2.$FS
820          program hello
821          integer anint
822          common /iv/ anint
823          external sigreg
824          call sigreg(anint)
825          end
826    EOF
827        echo >> genmake_warnings
828        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
829        cat genmake_tc_2.$FS >> genmake_warnings
830        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
831        echo $COMM >> genmake_warnings
832        $COMM >> genmake_warnings 2>&1
833        RETVAL=$?
834        if test "x$RETVAL" = x0 ; then
835            HAVE_SIGREG=t
836            DEFINES="$DEFINES -DHAVE_SIGREG"
837        fi
838        rm -f genmake_tc*
839    }
840    
841    
842    check_HAVE_SETRLSTK()  {
843        if test "x$HAVE_SETRLSTK" = xt ; then
844            DEFINES="$DEFINES -DHAVE_SETRLSTK"
845            return
846        fi  
847        if test ! "x$HAVE_SETRLSTK" = x ; then
848            return
849        fi
850        get_fortran_c_namemangling
851        cat <<EOF > genmake_tc_1.c
852    $FC_NAMEMANGLE
853    #include <sys/time.h>
854    #include <sys/resource.h>
855    #include <unistd.h>
856    void FC_NAMEMANGLE(setrlstk) ()
857    {
858        struct rlimit rls;
859        rls.rlim_cur = RLIM_INFINITY;
860        rls.rlim_max = RLIM_INFINITY;
861        setrlimit(RLIMIT_STACK, &rls);
862        return;
863    }
864    EOF
865        COMM="$CC $CFLAGS -c genmake_tc_1.c"
866        echo $COMM >> genmake_warnings
867        $COMM >> genmake_warnings 2>&1
868        RET_C=$?
869        cat <<EOF > genmake_tc_2.$FS
870          program hello
871          external setrlstk
872          call setrlstk()
873          end
874    EOF
875        echo >> genmake_warnings
876        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
877        cat genmake_tc_2.$FS >> genmake_warnings
878        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
879        echo $COMM >> genmake_warnings
880        $COMM >> genmake_warnings 2>&1
881        RETVAL=$?
882        if test "x$RETVAL" = x0 ; then
883            HAVE_SETRLSTK=t
884            DEFINES="$DEFINES -DHAVE_SETRLSTK"
885        fi
886        rm -f genmake_tc*
887    }
888    
889    
890    check_HAVE_STAT()  {
891        get_fortran_c_namemangling
892        cat <<EOF > genmake_tc_1.c
893    $FC_NAMEMANGLE
894    #include <stdio.h>
895    #include <stdlib.h>
896    #include <unistd.h>
897    #include <sys/stat.h>
898    #include <sys/types.h>
899    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
900    {
901        char name[512];
902        struct stat astat;
903    
904        name[0] = 'a'; name[1] = '\0';
905        if (! stat(name, &astat))
906            *nbyte = (int)(astat.st_size);
907        else
908            *nbyte = -1;
909    }
910    EOF
911        COMM="$CC $CFLAGS -c genmake_tc_1.c"
912        echo $COMM >> genmake_warnings
913        $COMM >> genmake_tc.log 2>&1
914        RET_C=$?
915        cat <<EOF > genmake_tc_2.$FS
916          program hello
917          integer nbyte
918          call tfsize(nbyte)
919          print *," HELLO WORLD", nbyte
920          end
921    EOF
922        echo >> genmake_warnings
923        echo "running: check_HAVE_STAT()" >> genmake_warnings
924        cat genmake_tc_2.$FS >> genmake_warnings
925        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
926        echo $COMM >> genmake_warnings
927        $COMM >> genmake_tc.log 2>&1
928        RETVAL=$?
929        if test "x$RETVAL" = x0 ; then
930            HAVE_STAT=t
931            DEFINES="$DEFINES -DHAVE_STAT"
932        fi
933        rm -f genmake_tc*
934    }
935    
936    
937    check_netcdf_libs()  {
938        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
939            return
940        fi
941        echo >> genmake_warnings
942        echo "running: check_netcdf_libs()" >> genmake_warnings
943        cat <<EOF > genmake_tnc.F
944          program fgennc
945    #include "netcdf.inc"
946    EOF
947        if test ! "x$MPI" = x ; then
948            echo '#include "mpif.h"' >> genmake_tnc.F
949        fi
950        cat <<EOF >> genmake_tnc.F
951          integer iret, ncid, xid
952          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
953          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
954          iret = nf_def_dim(ncid, 'X', 11, xid)
955          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
956          iret = nf_close(ncid)
957          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
958          end
959    EOF
960        echo "===  genmake_tnc.F  ===" > genmake_tnc.log
961        cat genmake_tnc.F >> genmake_tnc.log
962        echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
963        RET_CPP=f
964        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
965        echo "$COMM" >> genmake_tnc.log
966        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
967        if test "x$RET_CPP" = xf ; then
968            echo "  WARNING: CPP failed to pre-process the netcdf test." \
969                >> genmake_tnc.log
970            echo "    Please check that \$INCLUDES is properly set." \
971                >> genmake_tnc.log
972        fi
973        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
974        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
975        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
976            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
977        RET_COMPILE=$?
978        cat genmake_tnc.log >> genmake_warnings
979    
980        #EH3  Remove test program execution for machines that either disallow
981        #EH3  execution or cannot support it (eg. cross-compilers)
982        #EH3
983        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
984        #EH3 RETVAL=$?
985        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
986    
987        if test "x$RET_COMPILE" = x0 ; then
988            HAVE_NETCDF=t
989        else
990            # try again with "-lnetcdf" added to the libs
991            echo "try again with added '-lnetcdf'" > genmake_tnc.log
992            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
993            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
994            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
995            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
996                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
997                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
998            RET_COMPILE=$?
999            cat genmake_tnc.log >> genmake_warnings
1000            if test "x$RET_COMPILE" = x0 ; then
1001                LIBS="$LIBS -lnetcdf"
1002                HAVE_NETCDF=t
1003            else
1004            # try again with "-lnetcdff" added to the libs
1005                echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1006                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1007                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1008                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1009                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1010                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1011                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1012                RET_COMPILE=$?
1013                cat genmake_tnc.log >> genmake_warnings
1014                if test "x$RET_COMPILE" = x0 ; then
1015                    LIBS="$LIBS -lnetcdff -lnetcdf"
1016                    HAVE_NETCDF=t
1017                fi
1018            fi
1019        fi
1020        rm -f genmake_tnc*
1021    }
1022    
1023    
1024    
1025    ###############################################################################
1026    #   Sequential part of script starts here
1027    ###############################################################################
1028    
1029  #  Set defaults here  #  Set defaults here
1030  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 289  PLATFORM= Line 1033  PLATFORM=
1033  LN=  LN=
1034  S64=  S64=
1035  KPP=  KPP=
1036  FC=  #FC=
1037    #CC=gcc
1038    #CPP=
1039  LINK=  LINK=
1040  DEFINES="-DWORDLENGTH=4"  DEFINES=
1041  PACKAGES=  PACKAGES=
1042  ENABLE=  ENABLE=
1043  DISABLE=  DISABLE=
1044  MAKEFILE=  # MAKEFILE=
1045  MAKEDEPEND=  # MAKEDEPEND=
1046  PDEPEND=  PDEPEND=
1047  DUMPSTATE=t  DUMPSTATE=t
1048  PDEFAULT=  PDEFAULT=
1049  OPTFILE=  OPTFILE=
1050  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1051  FFLAGS=  FFLAGS=
1052  FOPTIM=  FOPTIM=
1053    FEXTRAFLAGS=
1054    USE_EXTENDED_SRC=
1055    EXTENDED_SRC_FLAG=
1056  CFLAGS=  CFLAGS=
1057  KFLAGS1=  KFLAGS1=
1058  KFLAGS2=  KFLAGS2=
1059    #LDADD=
1060  LIBS=  LIBS=
1061  KPPFILES=  KPPFILES=
1062  NOOPTFILES=  NOOPTFILES=
1063  NOOPTFLAGS=  NOOPTFLAGS=
1064    MPI=
1065    MPIPATH=
1066    OMP=
1067    OMPFLAG=
1068    TS=
1069    PAPIS=
1070    PCLS=
1071    FOOLAD=
1072    PAPI=
1073    PCL=
1074    HPMT=
1075    GSL=
1076    DEVEL=
1077    HAVE_TEST_L=
1078    
1079    # DEFINES checked by test compilation or command-line
1080    HAVE_SYSTEM=
1081    HAVE_FDATE=
1082    FC_NAMEMANGLE=
1083    HAVE_CLOC=
1084    # HAVE_SETRLSTK=
1085    HAVE_STAT=
1086    HAVE_NETCDF=
1087    HAVE_ETIME=
1088    IGNORE_TIME=
1089    
1090  MODS=  MODS=
1091  TOOLSDIR=  TOOLSDIR=
1092  SOURCEDIRS=  SOURCEDIRS=
1093  INCLUDEDIRS=  INCLUDEDIRS=
1094  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
1095    
1096    G2ARGS=
1097    BASH=
1098  PWD=`pwd`  PWD=`pwd`
1099  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1100  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1101  THISHOSTNAME=`hostname`  EMBED_SRC=
1102    THISHOST=`hostname`
1103  THISCWD=`pwd`  THISCWD=`pwd`
1104  THISDATE=`date`  THISDATE=`date`
1105    THISUSER=`echo $USER`
1106    THISVER=
1107  MACHINE=`uname -a`  MACHINE=`uname -a`
1108  EXECUTABLE=  EXECUTABLE=
1109  EXEHOOK=  EXEHOOK=
# Line 333  IEEE= Line 1113  IEEE=
1113  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1114      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1115  fi  fi
1116    FS=
1117    FS90=
1118    
1119  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1120  AD_OPTFILE=  AD_OPTFILE=
# Line 349  TAMC_EXTRA= Line 1131  TAMC_EXTRA=
1131    
1132    
1133  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1134  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1135  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"
1136    
1137  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1138  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1139  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1140  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1141  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1142    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
1143    
1144  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1145  gm_s7="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1146  gm_s8="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1147  gm_s9="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA"
1148    
1149  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8 $gm_s9"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
1150    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1151    
1152    cat <<EOF
1153    
1154    GENMAKE :
1155    
1156    A program for GENerating MAKEfiles for the MITgcm project.  For a
1157    quick list of options, use "genmake -h" or for more detail see:
1158    
1159      http://mitgcm.org/devel_HOWTO/
1160    
1161    EOF
1162    
 echo  
1163  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1164  gm_local="genmake_local"  gm_local="genmake_local"
1165  for i in . $MODS ; do  printf "  getting local config information:  "
1166      if test -r $i/$gm_local ; then  if test -f $gm_local ; then
         source $i/$gm_local  
         break  
     fi  
 done  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
1167      echo "using $gm_local"      echo "using $gm_local"
1168      source $gm_local      . $gm_local
1169      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
1170      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
1171  else  else
1172      echo "none found"      echo "none found"
1173  fi  fi
1174    
1175  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1176  #OPTIONS=  #OPTIONS=
1177  #n=0  #n=0
1178  #for i ; do  #for i ; do
# Line 397  fi Line 1184  fi
1184  #done  #done
1185  #parse_options  #parse_options
1186  ac_prev=  ac_prev=
1187  for ac_option ; do  for ac_option in "$@" ; do
1188    
1189        G2ARGS="$G2ARGS \"$ac_option\""
1190    
1191      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1192      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 420  for ac_option ; do Line 1209  for ac_option ; do
1209          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1210              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1211                    
1212          -adoptfile | --adoptfile | -ad | --ad)          -adoptfile | --adoptfile | -adof | --adof)
1213              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1214          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1215              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
# Line 440  for ac_option ; do Line 1229  for ac_option ; do
1229          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1230              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1231                    
1232            -bash | --bash)
1233                ac_prev=BASH ;;
1234            -bash=* | --bash=*)
1235                BASH=$ac_optarg ;;
1236            
1237            -makedepend | --makedepend | -md | --md)
1238                ac_prev=MAKEDEPEND ;;
1239            -makedepend=* | --makedepend=* | -md=* | --md=*)
1240                MAKEDEPEND=$ac_optarg ;;
1241            
1242          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
1243              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1244          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
1245              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1246                    
1247          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1248              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
1249          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
1250              PLATFORM=$ac_optarg ;;              echo
1251                usage
1252                ;;
1253                    
1254          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1255              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 475  for ac_option ; do Line 1276  for ac_option ; do
1276          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
1277              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
1278    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
1279  #           -cpp | --cpp)  #           -cpp | --cpp)
1280  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1281  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1282  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1283                        
1284            -cc | --cc)
1285                ac_prev=CC ;;
1286            -cc=* | --cc=*)
1287                CC=$ac_optarg ;;
1288            
1289          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1290              ac_prev=FC ;;              ac_prev=FC ;;
1291          -fc=* | --fc=*)          -fc=* | --fc=*)
1292              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1293                    
1294            -fs | --fs)
1295                ac_prev=FS ;;
1296            -fs=* | --fs=*)
1297                FS=$ac_optarg ;;
1298            
1299            -fs90 | --fs90)
1300                ac_prev=FS90 ;;
1301            -fs90=* | --fs90=*)
1302                FS90=$ac_optarg ;;
1303            
1304          -ieee | --ieee)          -ieee | --ieee)
1305              IEEE=true ;;              IEEE=true ;;
1306          -noieee | --noieee)          -noieee | --noieee)
1307              IEEE= ;;              IEEE= ;;
1308            
1309            -ts | --ts)
1310                TS=true ;;
1311            -papis | --papis)
1312                PAPIS=true ;;
1313            -pcls | --pcls)
1314                PCLS=true ;;
1315            -foolad | --foolad)
1316                FOOLAD=true ;;
1317            -papi | --papi)
1318                PAPI=true ;;
1319            -pcl | --pcl)
1320                PCL=true ;;
1321            -hpmt | --hpmt)
1322                HPMT=true ;;
1323    
1324            -gsl | --gsl)
1325                GSL=true ;;
1326    
1327            -devel | --devel)
1328                DEVEL=true ;;
1329    
1330          -mpi | --mpi)          -mpi | --mpi)
1331              MPI=true ;;              MPI=true ;;
1332          -nompi | --nompi)          -mpi=* | --mpi=*)
1333              MPI= ;;              MPIPATH=$ac_optarg
1334                MPI=true ;;
1335                    
1336          -jam | --jam)          -omp | --omp)
1337              JAM=1 ;;              OMP=true ;;
1338          -nojam | --nojam)          -omp=* | --omp=*)
1339              JAM=0 ;;              OMPFLAG=$ac_optarg
1340                OMP=true ;;
1341                    
1342          -ds | --ds)          -ds | --ds)
1343              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 517  for ac_option ; do Line 1351  for ac_option ; do
1351              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1352          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1353              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1354            
1355            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1356                IGNORE_TIME="-DIGNORE_TIME" ;;
1357    
1358            -es | --es | -embed-source | --embed-source)
1359                EMBED_SRC=t ;;
1360    
1361          -*)          -*)
1362              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 532  for ac_option ; do Line 1372  for ac_option ; do
1372            
1373  done  done
1374    
1375    
1376  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1377      echo      echo
1378      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1379      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1380      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1381      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/devel_HOWTO/"
1382      echo      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1383      echo "  for directions on how to setup and use the new \"genmake2\" input"      echo "WARNING: ignore \"./.genmakerc\" and continue."
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
1384      echo      echo
1385  fi  fi
1386    
1387    #  Find the MITgcm ${ROOTDIR}
1388  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1389      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1390        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1391          ROOTDIR=".."          ROOTDIR=".."
1392      else      else
1393          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1394              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1395                  ROOTDIR=$d                  ROOTDIR=$d
1396                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1397                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1398                  break                  break
1399              fi              fi
# Line 569  if test ! -d ${ROOTDIR} ; then Line 1411  if test ! -d ${ROOTDIR} ; then
1411      exit 1      exit 1
1412  fi  fi
1413    
1414    #  Find the MITgcm ${THISVER}
1415    version_file="${ROOTDIR}/doc/tag-index"
1416    if test -f $version_file ; then
1417        THISVER=`grep '^checkpoint' $version_file | head -1`
1418    #-  remove ./BUILD_INFO.h file if older than version_file
1419        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1420            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1421            rm -f ./BUILD_INFO.h
1422        fi
1423    fi
1424    
1425    if test "x$MAKEFILE" = x ; then
1426        MAKEFILE="Makefile"
1427    fi
1428    
1429  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1430  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1431      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 582  fi Line 1439  fi
1439  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
1440      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1441          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
1442          source "$OPTFILE"          . "$OPTFILE"
1443          RETVAL=$?          RETVAL=$?
1444          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1445              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1446              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1447              exit 1              exit 1
1448          fi          fi
# Line 609  fi Line 1466  fi
1466  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
1467      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1468          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1469          source "$AD_OPTFILE"          . "$AD_OPTFILE"
1470          RETVAL=$?          RETVAL=$?
1471          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1472              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1473              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1474              exit 1              exit 1
1475          fi          fi
# Line 625  if test "x${AD_OPTFILE}" != xNONE ; then Line 1482  if test "x${AD_OPTFILE}" != xNONE ; then
1482      fi      fi
1483  fi  fi
1484    
1485  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  #====================================================================
1486  #  and abort!  #  Set default values if not set by the optfile
1487    #
1488    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1489    #  either set defaults or complain and abort!
1490    if test ! "x$BASH" = x ; then
1491        # add a trailing space so that it works within the Makefile syntax (see below)
1492        BASH="$BASH "
1493    fi
1494  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1495      cat <<EOF 1>&2      cat <<EOF 1>&2
1496    
# Line 635  Error: no Fortran compiler: please speci Line 1499  Error: no Fortran compiler: please speci
1499    2) the "-fc=XXX" command-line option    2) the "-fc=XXX" command-line option
1500    3) the "./genmake_local" file    3) the "./genmake_local" file
1501  EOF  EOF
1502      exit 1      exit 1
1503    fi
1504    if test "x$CC" = x ; then
1505        CC=cc
1506    #     cat <<EOF 1>&2
1507    # Error: no C compiler: please specify using one of the following:
1508    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1509    #   2) the "-cc=XXX" command-line option
1510    #   3) the "./genmake_local" file
1511    # EOF
1512    #     exit 1
1513    fi
1514    if test "x$LINK" = x ; then
1515        LINK=$FC
1516    fi
1517    if test "x$MAKE" = x ; then
1518        MAKE="make"
1519    fi
1520    if test "x$CPP" = x ; then
1521        CPP=cpp
1522    fi
1523    #EH3 === UGLY ===
1524    #  The following is an ugly little hack to check for $CPP in /lib/ and
1525    #  it should eventually be replaced with a more general function that
1526    #  searches a combo of the user's path and a list of "usual suspects"
1527    #  to find the correct location for binaries such as $CPP.
1528    for i in " " "/lib/" ; do
1529        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1530    done
1531    #EH3 === UGLY ===
1532    echo "#define A a" | $CPP > test_cpp 2>&1
1533    RETVAL=$?
1534    if test "x$RETVAL" != x0 ; then
1535        cat <<EOF 1>&2
1536    
1537    Error: C pre-processor "$CPP" failed the test case: please specify using:
1538    
1539      1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1540      2) the "./genmake_local" file
1541      3) with the CPP environment variable
1542    
1543    EOF
1544        exit 1
1545    else
1546        rm -f test_cpp
1547    fi
1548    look_for_makedepend
1549    if test "x$LN" = x ; then
1550        LN="ln -s"
1551    fi
1552    echo "test" > genmake_test_ln
1553    $LN genmake_test_ln genmake_tlink
1554    RETVAL=$?
1555    if test "x$RETVAL" != x0 ; then
1556        cat <<EOF 1>&2
1557    
1558    Error: The command "ln -s" failed -- please specify a working soft-link
1559      command in the optfile.
1560    
1561    EOF
1562        exit 1
1563    fi
1564    test -L genmake_tlink > /dev/null 2>&1
1565    RETVAL=$?
1566    if test "x$RETVAL" = x0 ; then
1567        HAVE_TEST_L=t
1568    fi
1569    rm -f genmake_test_ln genmake_tlink
1570    
1571    #  Check for broken *.F/*.f handling and fix if possible
1572    check_for_broken_Ff
1573    
1574    if test ! "x$MPI" = x ; then
1575          echo "  Turning on MPI cpp macros"
1576          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1577    fi
1578    if test ! "x$OMP" = x ; then
1579          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1580          FFLAGS="$FFLAGS $OMPFLAG"
1581          F90FLAGS="$F90FLAGS $OMPFLAG"
1582          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1583    fi
1584    
1585    if test ! "x$TS" = x ; then
1586          echo "  Turning on timing per timestep"
1587          if test ! "x$FOOLAD" = x ; then
1588                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1589          else
1590                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1591          fi
1592          PACKAGES="$PACKAGES showflops"
1593    fi
1594    if test ! "x$PAPIS" = x ; then
1595          echo "  Turning on PAPI flop summary per timestep"
1596          echo "  Please make sure PAPIINC, PAPILIB are defined"
1597          if test ! "x$FOOLAD" = x ; then
1598                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1599          else
1600                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1601          fi
1602          INCLUDES="$INCLUDES $PAPIINC"
1603          LIBS="$LIBS $PAPILIB"
1604          PACKAGES="$PACKAGES showflops"
1605    fi
1606    if test ! "x$PCLS" = x ; then
1607          echo "  Turning on PCL counter summary per timestep"
1608          echo "  Please make sure PCLINC, PCLLIB are defined"
1609          if test ! "x$FOOLAD" = x ; then
1610                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1611          else
1612                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1613          fi
1614          INCLUDES="$INCLUDES $PCLINC"
1615          LIBS="$LIBS $PCLLIB"
1616          PACKAGES="$PACKAGES showflops"
1617    fi
1618    if test ! "x$PAPI" = x ; then
1619          if test ! "x$PAPIS" = x ; then
1620              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1621              echo "  Sticking with PAPI flop summary per timestep!"
1622          else
1623              echo "  Turning on performance analysis with PAPI"
1624              echo "  Please make sure PAPIINC, PAPILIB are defined"
1625              DEFINES="$DEFINES -DUSE_PAPI"
1626              INCLUDES="$INCLUDES $PAPIINC"
1627              LIBS="$LIBS $PAPILIB"
1628          fi
1629    fi
1630    if test ! "x$PCL" = x ; then
1631          if test ! "x$PCLS" = x ; then
1632              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1633              echo "  Sticking with PCL flop summary per timestep!"
1634          else
1635              echo "  Turning on performance analysis with PCL"
1636              echo "  Please make sure PCLINC, PCLLIB are defined"
1637              DEFINES="$DEFINES -DUSE_PCL"
1638              INCLUDES="$INCLUDES $PCLINC"
1639              LIBS="$LIBS $PCLLIB"
1640          fi
1641    fi
1642    if test ! "x$HPMT" = x ; then
1643          if test ! "x$PAPI" = x ; then
1644              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1645              echo "  Sticking with PAPI!"
1646          else if test ! "x$PCL" = x ; then
1647              echo "  PCL and the HPM Toolkit cannot co-exist!"
1648              echo "  Sticking with PCL!"
1649          else
1650              echo "  Turning on performance analysis with the HPM Toolkit"
1651              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1652              DEFINES="$DEFINES -DUSE_LIBHPM"
1653              INCLUDES="$INCLUDES $HPMTINC"
1654              LIBS="$LIBS $HPMTLIB"
1655          fi
1656          fi
1657    fi
1658    if test ! "x$GSL" = x ; then
1659          echo "  Turning on use of GSL to control floating point calculations"
1660          echo "  Please make sure GSLINC, GSLLIB are defined"
1661          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1662          INCLUDES="$INCLUDES $GSLINC"
1663          LIBS="$LIBS $GSLLIB"
1664    fi
1665    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1666    if test ! "x$USE_EXTENDED_SRC" = x ; then
1667          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1668          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1669    fi
1670    
1671    printf "\n===  Checking system libraries  ===\n"
1672    printf "  Do we have the system() command using $FC...  "
1673    cat > genmake_tcomp.$FS <<EOF
1674          program hello
1675          call system('echo hi')
1676          end
1677    EOF
1678    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1679    RETVAL=$?
1680    if test "x$RETVAL" = x0 ; then
1681        HAVE_SYSTEM=t
1682        DEFINES="$DEFINES -DHAVE_SYSTEM"
1683        echo "yes"
1684    else
1685        HAVE_SYSTEM=
1686        echo "no"
1687    fi
1688    rm -f genmake_tcomp*
1689    
1690    printf "  Do we have the fdate() command using $FC...  "
1691    cat > genmake_tcomp.$FS <<EOF
1692          program hello
1693          CHARACTER*(128) string
1694          string = ' '
1695          call fdate( string )
1696          print *, string
1697          end
1698    EOF
1699    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1700    RETVAL=$?
1701    if test "x$RETVAL" = x0 ; then
1702        HAVE_FDATE=t
1703        DEFINES="$DEFINES -DHAVE_FDATE"
1704        echo "yes"
1705    else
1706        HAVE_FDATE=
1707        echo "no"
1708    fi
1709    rm -f genmake_tcomp*
1710    
1711    printf "  Do we have the etime() command using $FC...  "
1712    cat > genmake_tcomp.$FS <<EOF
1713          program hello
1714          REAL*4 ACTUAL, TARRAY(2)
1715          EXTERNAL ETIME
1716          REAL*4 ETIME
1717          actual = etime( tarray )
1718          print *, tarray
1719          end
1720    EOF
1721    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1722    RETVAL=$?
1723    if test "x$RETVAL" = x0 ; then
1724        HAVE_ETIME=t
1725        DEFINES="$DEFINES -DHAVE_ETIME"
1726        echo "yes"
1727    else
1728        HAVE_ETIME=
1729        echo "no"
1730  fi  fi
1731  if test "x$LINK" = x ; then  rm -f genmake_tcomp*
1732      LINK=$FC  
1733    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1734    check_HAVE_CLOC
1735    if test "x$HAVE_CLOC" != x ; then
1736        echo "yes"
1737    else
1738        echo "no"
1739        if test "x$EMBED_SRC" = xt ; then
1740            echo "    WARNING: you requested file embedding but it has"
1741            echo "      been disabled since C code cannot be called"
1742            EMBED_SRC=
1743        fi
1744  fi  fi
1745  if test "x$CPP" = x ; then  rm -f genmake_t*
1746      CPP="cpp"  
1747    printf "  Can we unlimit the stack size using $FC...  "
1748    check_HAVE_SETRLSTK
1749    if test "x$HAVE_SETRLSTK" = xt ; then
1750        echo "yes"
1751    else
1752        echo "no"
1753  fi  fi
1754  echo "#define A a" | $CPP > test_cpp 2>&1  rm -f genmake_t*
 RETVAL=$?  
 if test "x$RETVAL" != x0 ; then  
     cat <<EOF 1>&2  
1755    
1756  Error: C pre-processor "$CPP" failed the test case: please specify using:  printf "  Can we register a signal handler using $FC...  "
1757    check_HAVE_SIGREG
1758    if test "x$HAVE_SIGREG" = xt ; then
1759        echo "yes"
1760    else
1761        echo "no"
1762    fi
1763    rm -f genmake_t*
1764    
1765    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"  printf "  Can we use stat() through C calls...  "
1766    2) the "./genmake_local" file  check_HAVE_STAT
1767    if test "x$HAVE_STAT" != x ; then
1768        echo "yes"
1769    else
1770        echo "no"
1771    fi
1772    rm -f genmake_t*
1773    
1774  EOF  printf "  Can we create NetCDF-enabled binaries...  "
1775      exit 1  check_netcdf_libs
1776    if test "x$HAVE_NETCDF" != x ; then
1777        echo "yes"
1778  else  else
1779      rm -f test_cpp      echo "no"
1780    fi
1781    DEFINES="$DEFINES $IGNORE_TIME"
1782    
1783    if test "x$EMBED_SRC" = xt ; then
1784        build_embed_encode
1785  fi  fi
1786  if test "x$MAKEDEPEND" = x ; then  if test "x$EMBED_SRC" = xt ; then
1787      MAKEDEPEND=makedepend      ENABLE="$ENABLE embed_files"
1788  fi  fi
1789    
1790    
1791  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1792  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1793  for d in $MODS ; do  for d in $MODS ; do
1794      if test ! -d $d ; then      if test ! -d $d ; then
1795          echo          echo
1796          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1797          exit 1          exit 1
1798      else      else
1799          echo -n " $d"          printf "$d "
1800          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1801          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1802      fi      fi
1803  done  done
1804  echo  echo
1805    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1806  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1807      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1808  fi  fi
1809    
1810  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1811      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1812        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1813          EXEDIR=../exe          EXEDIR=../exe
1814      else      else
1815          EXEDIR=.          EXEDIR=.
# Line 700  if test "x${TOOLSDIR}" = x ; then Line 1824  if test "x${TOOLSDIR}" = x ; then
1824      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1825  fi  fi
1826  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1827      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1828      exit 1      exit 1
1829  fi  fi
1830  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1831      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1832        RETVAL=$?
1833        if test "x${RETVAL}" = x0 ; then
1834            S64='$(TOOLSDIR)/set64bitConst.sh'
1835        else
1836            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1837            RETVAL=$?
1838            if test "x${RETVAL}" = x0 ; then
1839                S64='$(TOOLSDIR)/set64bitConst.csh'
1840            else
1841                cat <<EOF
1842    
1843    ERROR: neither of the two default scripts:
1844    
1845        ${TOOLSDIR}/set64bitConst.sh
1846        ${TOOLSDIR}/set64bitConst.csh
1847    
1848      are working so please check paths or specify (with \$S64) a
1849      working version of this script.
1850    
1851    EOF
1852                exit 1
1853            fi
1854        fi
1855  fi  fi
1856    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1857    
1858  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1859    
# Line 714  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 1862  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1862  #  they appear as regular source code  #  they appear as regular source code
1863  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1864      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1865      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
1866      RETVAL=$?      RETVAL=$?
1867      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1868          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1869      else      else
1870          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1871          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1872          exit 1          exit 1
1873      fi      fi
1874  fi  fi
1875    
1876    #same for pkg/exch2 and pkg/regrid
1877    for pdir in exch2 regrid ; do
1878        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1879            echo "  Making source files in pkg/${pdir} from templates"
1880            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1
1881            RETVAL=$?
1882            if test "x${RETVAL}" = x0 ; then
1883                rm -f make_${pdir}.errors
1884            else
1885                echo "Error: problem encountered while building source files in pkg/${pdir}:"
1886                cat make_${pdir}.errors 1>&2
1887                exit 1
1888            fi
1889        fi
1890    done
1891    
1892  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1893  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1894      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 751  if test ! "x${RETVAL}" = x0 ; then Line 1915  if test ! "x${RETVAL}" = x0 ; then
1915      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
1916      exit 1      exit 1
1917  fi  fi
1918  source ./.pd_tmp  . ./.pd_tmp
1919  rm -f ./.pd_tmp  rm -f ./.pd_tmp
1920    
1921  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1922  #  file should eventually be added so that, for convenience, one can  #  file should eventually be added so that, for convenience, one can
1923  #  specify groups of packages using names like "ocean" and "atmosphere".  #  specify groups of packages using names like "ocean" and "atmosphere".
1924  echo  -n "  checking default package list:  "  echo "  checking default package list:  "
1925  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1926      for i in "." $MODS ; do      for i in "." $MODS ; do
1927          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
# Line 770  if test "x${PDEFAULT}" = x ; then Line 1934  if test "x${PDEFAULT}" = x ; then
1934      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1935  fi  fi
1936  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1937      echo "default packages file disabled"      echo "    default packages file disabled"
1938  else  else
1939      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1940          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1941      else      else
1942          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1943          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1944          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1945          RETVAL=$?          RETVAL=$?
1946          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1947              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1948              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1949              exit 1              exit 1
1950          fi          fi
# Line 789  else Line 1952  else
1952              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1953          done          done
1954          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1955          expand_pkg_groups          RET=1
1956            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1957          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1958      fi      fi
1959  fi  fi
1960    
1961  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1962    for i in $PACKAGES ; do
1963        echo $i >> ./.tmp_pack
1964    done
1965    for i in `grep  "-" ./.tmp_pack` ; do
1966        j=`echo $i | sed 's/[-]//'`
1967        DISABLE="$DISABLE $j"
1968    done
1969  pack=  pack=
1970  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1971      addit="t"      addit="t"
# Line 811  PACKAGES="$pack" Line 1982  PACKAGES="$pack"
1982  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1983  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1984  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1985    # Test if each explicitly referenced package exists
1986  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1987      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1988        if test ! -d "$ROOTDIR/pkg/$j" ; then
1989          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1990          exit 1          exit 1
1991      fi      fi
1992      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1993  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1994  PACKAGES=  PACKAGES=
1995  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1996      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1997  done  done
1998    rm -f ./.tmp_pack
1999  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
2000    
2001    #  Check for package MNC: if NetCDF is available, then build the MNC
2002    #  template files ; otherwise, delete mnc from the list of packages.
2003    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
2004    RETVAL=$?
2005    if test "x$RETVAL" = x0 ; then
2006        if test "x$HAVE_NETCDF" != xt ; then
2007            cat <<EOF
2008    
2009    *********************************************************************
2010    WARNING: the "mnc" package was enabled but tests failed to compile
2011      NetCDF applications.  Please check that:
2012    
2013      1) NetCDF is correctly installed for this compiler and
2014      2) the LIBS variable (within the "optfile") specifies the correct
2015           NetCDF library to link against.
2016    
2017      Due to this failure, the "mnc" package is now DISABLED.
2018    *********************************************************************
2019    
2020    EOF
2021            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2022            DISABLE="$DISABLE mnc"
2023        else
2024            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2025            RETVAL=$?
2026            if test "x${RETVAL}" = x0 ; then
2027                rm -f make_mnc.errors
2028            else
2029                echo "Error: problem encountered while building source files in pkg/mnc:"
2030                cat make_mnc.errors 1>&2
2031                exit 1
2032            fi
2033        fi
2034    fi
2035    
2036    #  Check for package PROFILES: if NetCDF is not available,
2037    #  then delete profiles from the list of available packages.
2038    echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1
2039    RETVAL=$?
2040    if test "x$RETVAL" = x0 ; then
2041        if test "x$HAVE_NETCDF" != xt ; then
2042            cat <<EOF
2043    
2044    *********************************************************************
2045    WARNING: the "profiles" package was enabled but tests failed to
2046      compile NetCDF applications.  Please check that:
2047    
2048      1) NetCDF is correctly installed for this compiler and
2049      2) the LIBS variable (within the "optfile") specifies the correct
2050           NetCDF library to link against.
2051    
2052      Due to this failure, the "profiles" package is now DISABLED.
2053    *********************************************************************
2054    
2055    EOF
2056            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2057            DISABLE="$DISABLE profiles"
2058        fi
2059    fi
2060    
2061  echo "  applying package dependency rules"  echo "  applying package dependency rules"
2062  ck=  ck=
2063  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
2064      i=0      i=0
2065      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2066      rtot=$nname      rtot=$nname
2067      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2068    
2069          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2070          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 866  while test "x$ck" != xtt ; do Line 2098  while test "x$ck" != xtt ; do
2098    
2099          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2100          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2101                #echo "   " $pname ": need to add :" $dname
2102              in_dis="f"              in_dis="f"
2103              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2104                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 890  while test "x$ck" != xtt ; do Line 2123  while test "x$ck" != xtt ; do
2123              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2124              exit 1              exit 1
2125          fi          fi
2126          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2127            #i=$(( $i + 1 ))
2128      done      done
2129      ck=$ck"t"      ck=$ck"t"
2130  done  done
# Line 909  for i in $PACKAGES ; do Line 2143  for i in $PACKAGES ; do
2143      fi      fi
2144  done  done
2145    
 #  This is compatible with the old genmake.  The "DISABLE_*" flags  
 #  need to be replaced by the "ALLOW_*" flags set below.  
 #  
 # echo -n "  Setting package-specific CPP flags:  "  
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
2146  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2147  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
 cat <<EOF >$PACKAGES_DOT_H".tmp"  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
   
 C  Packages disabled by genmake:  
 EOF  
2148  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2149  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2150  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2151  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2152  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2153  all_pack=  all_pack=
2154    DISABLED_PACKAGES=
2155  for n in $names ; do  for n in $names ; do
2156      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2157          has_pack="f"          has_pack="f"
# Line 958  for n in $names ; do Line 2162  for n in $names ; do
2162              fi              fi
2163          done          done
2164          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2165              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2166              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
 #           DEFINES="$DEFINES -U$undef"  
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
2167          fi          fi
2168      fi      fi
2169  done  done
2170  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2171  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2172      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2173      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2174  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2175    
2176  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2177      case $i in      case $i in
2178          aim_v23)          aim_v23)
2179              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2180              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
2181              ;;              ;;
2182      esac      esac
2183  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2184    
2185  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
2186    
2187  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
2188  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2189  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2190      STANDARDDIRS="eesupp model"      STANDARDDIRS="eesupp model"
2191  fi  fi
2192  for d in $STANDARDDIRS ; do  if test "x$STANDARDDIRS" != x ; then
2193      adr="$ROOTDIR/$d/src"      for d in $STANDARDDIRS ; do
2194      if test ! -d $adr ; then          adr="$ROOTDIR/$d/src"
2195          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
2196          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2197          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2198      else              exit 1
2199          SOURCEDIRS="$SOURCEDIRS $adr"          else
2200      fi              SOURCEDIRS="$SOURCEDIRS $adr"
2201      adr="$ROOTDIR/$d/inc"          fi
2202      if test ! -d $adr ; then          adr="$ROOTDIR/$d/inc"
2203          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
2204          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2205          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2206      else              exit 1
2207          INCLUDEDIRS="$INCLUDEDIRS $adr"          else
2208      fi              INCLUDEDIRS="$INCLUDEDIRS $adr"
2209  done          fi
2210        done
2211    fi
2212    
2213  echo "  Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2214  echo "    of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
2215  CPP_OPTIONS=  CPP_OPTIONS=
2216    CPP_EEOPTIONS=
2217  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
2218    names=`ls -1 "$ROOTDIR/pkg"`
2219  for i in $spaths ; do  for i in $spaths ; do
2220      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
2221      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
2222          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2223          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2224          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2225            for n in $names ; do
2226                test_for_package_in_cpp_options $CPP_OPTIONS $n
2227            done
2228        fi
2229        try="$i/CPP_EEOPTIONS.h"
2230        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2231            echo "    found CPP_EEOPTIONS=\"$try\""
2232            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2233    #**** not yet enabled ****
2234    #        test_for_mpi_in_cpp_eeoptions $try
2235    #**** not yet enabled ****
2236            CPP_EEOPTIONS="$try"
2237      fi      fi
2238  done  done
2239  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
2240      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2241      exit 1      exit 1
2242  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
2243    
2244  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2245  #  compiler.  #  compiler.
2246  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2247      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2248  fi  fi
2249  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2250  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2251      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2252      for j in $list_files ; do      for j in $list_files ; do
2253          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2254      done      done
2255  done  done
2256    if test ! "x"$FS = "x.f" ; then
2257  cat <<EOF > adjoint_sed      cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2258  s/call adopen(/call adopen ( mythid,\\      mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2259       \&           /g  fi
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
2260    
2261  echo  echo
2262  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2263  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2264  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2265      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2266          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2267      fi      fi
2268  done  done
2269    
2270    if test ! "x$DIVA" = x ; then
2271        echo "  Creating the pseudo-MPI include directory"
2272        INCLUDES="-I./mpi_headers $INCLUDES"
2273        rm -rf ./mpi_headers
2274        mkdir -p ./mpi_headers
2275    
2276        if test "x$MPIINCLUDEDIR" = x ; then
2277            if test "x$MPIHOME" = x ; then
2278                MPIHOME='/usr'
2279            fi
2280            MPIINCLUDEDIR='$MPIHOME/include'
2281        fi
2282        
2283        if test -r $MPIINCLUDEDIR/mpif.h ; then
2284            for i in $MPI_HEADER_FILES; do
2285                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2286            done
2287    
2288            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2289        else
2290            echo " We cannot create a copy of mpif.h!"
2291    #       exit -1
2292        fi
2293    fi
2294    
2295  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2296  rm -rf .links.tmp  rm -rf .links.tmp
2297  mkdir .links.tmp  mkdir .links.tmp
2298    touch .links.tmp/foo
2299    if test ! -r ".links.tmp/foo" ; then
2300        echo
2301        echo "ERROR : something is wrong with your directory permissions or"
2302        echo "   your user file-creation mask (\"umask\") since creating a"
2303        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2304        echo "   not working.  Please try setting your umask to something"
2305        echo "   sane such as:"
2306        echo
2307        echo "      umask 0002"
2308        echo
2309        echo "   and please verify that you have the proper permissions for"
2310        echo "   creating sub-directories and then reading files created"
2311        echo "   within them."
2312        echo
2313        exit 1
2314    fi
2315    rm -f .links.tmp/foo
2316    
2317    if test "x$OPENAD" != x ; then
2318        OAD_DONT_COMPILE="/dev/null"
2319        OAD_DONT_TRANSFORM="/dev/null"
2320        OAD_KEEP_ORIGINAL="/dev/null"
2321        OAD_CB2M_FILES="/dev/null"
2322        echo "  looking for dontCompile file:  "
2323        for i in "." $MODS ; do
2324            if test -r $i"/dontCompile" ; then
2325                OAD_DONT_COMPILE=$i"/dontCompile"
2326                echo "     found $OAD_DONT_COMPILE"
2327                break
2328            fi
2329        done
2330        echo "  looking for dontTransform file:  "
2331        for i in "." $MODS ; do
2332            if test -r $i"/dontTransform" ; then
2333                OAD_DONT_TRANSFORM=$i"/dontTransform"
2334                echo "     found $OAD_DONT_TRANSFORM"
2335                break
2336            fi
2337        done
2338        echo "  looking for keepOriginal file:  "
2339        for i in "." $MODS ; do
2340            if test -r $i"/keepOriginal" ; then
2341                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2342                echo "     found $OAD_KEEP_ORIGINAL"
2343                break
2344            fi
2345        done
2346        echo "  looking for cb2mFiles:  "
2347        for i in "." $MODS ; do
2348            if test -r $i"/cb2mFiles" ; then
2349                OAD_CB2M_FILES=$i"/cb2mFiles"
2350                echo "     found $OAD_CB2M_FILES"
2351                break
2352            fi
2353        done
2354        echo "   OpenAD exceptions:  "
2355    fi
2356    
2357  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2358  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2359  echo -n 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2360  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2361  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2362  echo -n 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2363  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2364    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2365  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2366  for d in $alldirs ; do  for d in $alldirs ; do
2367      deplist=      deplist=
2368      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2369      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2370        if test "x$OPENAD" != x ; then
2371            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2372        fi
2373      for sf in $sfiles ; do      for sf in $sfiles ; do
2374          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2375              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2376                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  ignore_f=f
2377                  touch .links.tmp/$sf                  case $d/$sf in
2378                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2379                  case $extn in                          ignore_f=t
2380                      F)                          ;;
2381                          echo    " \\"  >> srclist.inc                    ./AD_CONFIG.h)
2382                          echo -n " $sf" >> srclist.inc                          ignore_f=t
2383                            ;;
2384                      ./FC_NAMEMANGLE.h)
2385                            ignore_f=t
2386                            ;;
2387                      ./BUILD_INFO.h)
2388                            ignore_f=t
2389                            ;;
2390                      ./EMBEDDED_FILES.h)
2391                            ignore_f=t
2392                            ;;
2393                      *)
2394                            #  For the local directory *ONLY*,
2395                            #  ignore all soft-links
2396                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2397                                ignore_f=t
2398                            else
2399                                touch .links.tmp/$sf
2400                                deplist="$deplist $sf"
2401                            fi
2402                            ;;
2403                    esac
2404                    if test "x$ignore_f" = xf ; then
2405                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2406                        case $extn in
2407                          F)
2408                            echo    " \\"  >> F77srclist.tmp
2409                            printf " $sf" >> F77srclist.tmp
2410                            if test "x$OPENAD" != x ; then
2411                                basename=${sf%%.F}
2412                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2413                                if test -z "$isAD" ; then
2414                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2415                                    if test -z "$toBeIgnored" ; then
2416                                        echo    " \\"  >> nonADF77srclist.tmp
2417                                        printf " $sf" >> nonADF77srclist.tmp
2418                                    else
2419                                        echo "    not to be compiled   :  $sf"
2420                                    fi
2421                                else # file is initially listed as an AD file we want to exclude it
2422                                     # or we want to retain the untransformed version
2423                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2424                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2425                                    if test -n "$notToBeTransformed"; then
2426                                        echo "    not to be transformed:  $sf"
2427                                    fi
2428                                    if test -n "$untransformedVersionToBeKept" ; then
2429                                        echo "    original to be kept  :  $sf"
2430                                    fi    
2431                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2432                                        echo    " \\"  >> nonADF77srclist.tmp
2433                                        printf " $sf" >> nonADF77srclist.tmp
2434                                    fi
2435                                fi
2436                            fi
2437                          ;;                          ;;
2438                      F90)                      F90)
2439                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2440                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2441                          ;;                          ;;
2442                      c)                      c)
2443                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2444                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2445                          ;;                          ;;
2446                      h)                      h)
2447                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2448                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2449                          ;;                          ;;
2450                      flow)                      flow)
2451                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.tmp
2452                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.tmp
2453                          ;;                          ;;
2454                  esac                     esac
2455                    fi
2456              fi              fi
2457          fi          fi
2458      done      done
2459      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2460          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2461            echo "" >> srclinks.tmp
2462          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2463          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2464          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2465    # This may happen when make thinks that a header file has to be "remade"
2466    # because a module it depends on has changed.  In this case we do nothing.
2467            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2468          fi
2469      fi      fi
2470  done  done
2471  rm -rf .links.tmp  rm -rf .links.tmp
2472  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2473  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2474  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2475  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2476  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2477    echo "" >> ad_flow_files.tmp
2478    
2479  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2480      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
2481  fi  fi
2482  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1170  echo "#    $MACHINE" >> $MAKEFILE Line 2485  echo "#    $MACHINE" >> $MAKEFILE
2485  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2486  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2487  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2488  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
2489  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2490  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2491    
2492  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2493  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
2494  EXE_SVD=$EXECUTABLE"_svd"  EXE_SVD=$EXECUTABLE"_svd"
2495    
2496  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2497    #
2498    # OPTFILE="$OPTFILE"
2499  #  #
2500  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2501  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 1212  EXE_AD      = ${EXE_AD} Line 2529  EXE_AD      = ${EXE_AD}
2529  EXE_FTL     = ${EXE_FTL}  EXE_FTL     = ${EXE_FTL}
2530  EXE_SVD     = ${EXE_SVD}  EXE_SVD     = ${EXE_SVD}
2531    
2532    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2533    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2534    
2535    # These files are created by Makefile
2536    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2537  EOF  EOF
2538    
2539  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2540        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2541    else
2542        echo "EMBEDDED_FILES = " >>$MAKEFILE
2543    fi
2544    
2545  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2546  # Unix ln (link)  # Unix ln (link)
2547  LN = ${LN}  LN = ${LN}
# Line 1229  KPP = ${KPP} Line 2555  KPP = ${KPP}
2555  FC = ${FC}  FC = ${FC}
2556  # Fortran compiler  # Fortran compiler
2557  F90C = ${F90C}  F90C = ${F90C}
2558    # C compiler
2559    CC = ${CC}
2560  # Link editor  # Link editor
2561  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2562    
2563  # Defines for CPP  # Defines for CPP
2564  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1240  INCLUDES = ${INCLUDES} Line 2568  INCLUDES = ${INCLUDES}
2568  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2569  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2570  # Optim./debug for FC  # Optim./debug for FC
2571  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2572  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2573  # Optim./debug for FC  # Optim./debug for FC
2574  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2575  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2576    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2577  # Flags for CC  # Flags for CC
2578  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2579  # Files that should not be optimized  # Files that should not be optimized
2580  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2581  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2582  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2583  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2584  # Name of the Mekfile  # Name of the Mekfile
2585  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2586    
2587  EOF  EOF
2588    
2589  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2590  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2591  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2592  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2593  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2594  echo               >> $MAKEFILE  cat ad_flow_files.tmp   >> $MAKEFILE
 echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  
 echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  
 echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2595    
2596  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
 rm -f ad_flow_files.inc  
2597    
2598  cat >>$MAKEFILE <<EOF  echo >> $MAKEFILE
2599    
2600  .SUFFIXES:  # add definitions for preprocessed sources
2601  .SUFFIXES: .o .f .p .F .c .F90 .f90  # and note that not all systems allow case sensitive extensions
2602    # hence the $FS and $FS90 here.
2603    # for fixed format f90 files we use ff90 or FF90 resp
2604    # but these are not expected to be the original source files
2605    
2606    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2607    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2608    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2609    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2610    echo >> $MAKEFILE
2611    echo '.SUFFIXES:' >> $MAKEFILE
2612    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2613    
2614    cat >>$MAKEFILE <<EOF
2615    
2616  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2617  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2618            @echo Creating \$@ ...
2619          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2620  depend:  depend:
2621          @make links          @make links
2622          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2623          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2624            -rm -f makedepend.out
2625    
2626    lib: libmitgcmuv.a
2627    
2628  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  libmitgcmuv.a: \$(OBJFILES)
2629            ar rcv libmitgcmuv.a \$(OBJFILES)
2630            ar d   libmitgcmuv.a main.o
2631    
2632  small_f: \$(F77FILES) \$(F90FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2633    
2634    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2635    
2636  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2637          @printf 'running ... '          @printf 'running ... '
2638          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2639    
2640  clean:  clean:
2641          -cat AD_CONFIG.template > AD_CONFIG.h          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2642          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.o
2643            -rm -rf *.$FS *.flowdir
2644            -rm -rf *.f$FS90 *_mod.h *_mod.F90 *.FF90 *.mod-whirl ad_input*
2645            -rm -rf temp.sed
2646  Clean:  Clean:
2647          @make clean          @make clean
2648          @make cleanlinks          @make cleanlinks
2649          -rm -f Makefile.bak genmake_state genmake_*optfile make.log          -rm -f \$(SPECIAL_FILES)
2650            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log f90mkdepend.log *.bak
2651            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2652  CLEAN:  CLEAN:
2653          @make Clean          @make Clean
2654          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2655          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2656          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2657          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2658            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2659            -rm -rf mnc_test_*
2660    
2661  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2662  makefile:  makefile:
2663          ${0} $@          $THIS_SCRIPT $G2ARGS
2664  cleanlinks:  cleanlinks:
2665          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2666    
2667  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are created by make
2668  .F.f:  ${PACKAGES_DOT_H}:
2669            @echo Creating \$@ ...
2670            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2671    AD_CONFIG.h:
2672            @echo Creating \$@ ...
2673            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2674    FC_NAMEMANGLE.h:
2675            @echo Creating \$@ ...
2676            echo "$FC_NAMEMANGLE" > \$@
2677    
2678    BUILD_INFO.h:
2679            @echo Creating \$@ ...
2680    EOF
2681    
2682    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2683    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2684    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2685    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2686    
2687    if test "x$EMBED_SRC" = xt ; then
2688        cat >>$MAKEFILE <<EOF
2689    
2690    decode_files.o : EMBEDDED_FILES.h
2691    
2692    ##  \$(F77_PP_SRC_FILES)
2693    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2694            @echo Creating \$@ ...
2695            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2696            -rm -f all_fF.tar.gz
2697            -gzip all_fF.tar
2698    
2699    EMBEDDED_FILES.h : all_fF.tar.gz
2700            @echo Creating \$@ ...
2701            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2702    
2703    EOF
2704    fi
2705    
2706    cat >>$MAKEFILE <<EOF
2707    
2708    # The normal chain of rules is (  .F - .$FS - .o  )
2709    
2710    ## This nullifies any default implicit rules concerning these two file types:
2711    ## %.o : %.F
2712    
2713    .F.$FS:
2714          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2715  .f.o:  .$FS.o:
2716          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2717  .F90.f90:  .F90.$FS90:
2718            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2719    .FF90.f$FS90:
2720          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2721  .f90.o:  .$FS90.o:
2722          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2723    .f$FS90.o:
2724            cp \$< \$(basename  \$<).f90
2725            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2726  .c.o:  .c.o:
2727          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2728    .flow.flowdir:
2729            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2730    
2731  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2732  .F.p:  .F.p:
2733          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2734  .p.f:  .p.$FS:
2735          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2736    
2737    EOF
2738    
2739  #=========================================  #=========================================
2740  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2741    #===  for TAMC/TAF  ======================
2742    
2743    if test "x$OPENAD" = x ; then
2744    
2745    cat >>$MAKEFILE <<EOF
2746    
2747  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2748  TAF            = ${TAF}  TAF            = ${TAF}
# Line 1345  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2757  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2757  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2758  for i in $ad_vars ; do  for i in $ad_vars ; do
2759      name=$i      name=$i
2760      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2761      eval $t1      eval $t1
2762      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2763      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2764  done  done
2765    
2766  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2767  echo >> $MAKEFILE  echo >> $MAKEFILE
2768  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2769  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2770  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2771      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2772      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2773  done  done
2774  echo >> $MAKEFILE  echo >> $MAKEFILE
2775  rm -f ad_files  rm -f adSrcFiles.tmp
2776    
2777  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2778    
 AD_CONFIG.h:  
         cat AD_CONFIG.template > AD_CONFIG.h  
   
2779  # ... AD ...  # ... AD ...
2780  ad: ad_taf  adall: \$(EXE_AD)
2781  ad_taf_f: ad_taf_output.f  adtaf: ad_taf_output.$FS
2782  ad_tamc_f: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2783    
2784  ad_input_code.f: \$(SRCFILES)  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
2785          cat ad_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2786          @make \$(F77FILES)          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2787          @make \$(AD_FLOW_FILES)          -rm -f ad_config.template
2788          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          @make \$(F77_PP_SRC_FILES)
2789            @make \$(FLOFILES)
2790  ad_taf_output.f: ad_input_code.f          cat \$(FLOFILES) \$(AD_FILES) > ad_input_code.$FS
2791          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f  
2792          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f  ad_taf_output.$FS: ad_input_code.$FS
2793            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2794  ad_taf: ad_taf_output.o \$(OBJFILES)          ls -l ad_input_code_ad.$FS
2795          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2796    
2797  ad_tamc_output.f: ad_input_code.f  adtafonly:
2798          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2799          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f          ls -l ad_input_code_ad.$FS
2800            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2801    
2802    \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2803            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2804    
2805    ad_tamc_output.$FS: ad_input_code.$FS
2806            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2807            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2808    
2809  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2810          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2811    
2812    adonlyfwd:
2813            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2814    
2815    adtrick:
2816            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2817    
2818  # ... FTL ...  # ... FTL ...
2819  ftl: ftl_taf  ftlall: ftl_taf
2820  ftl_taf_f: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
2821  ftl_tamc_f: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
2822    
2823  ftl_input_code.f: \$(SRCFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2824          cat ftl_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2825            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2826            -rm -f ftl_config.template
2827            @make \$(F77_PP_SRC_FILES)
2828          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2829          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2830    
2831  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
2832          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2833          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_taf_output.f          ls -l ftl_input_code_ftl.$FS
2834            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2835    
2836    ftltafonly:
2837            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2838            ls -l ftl_input_code_ftl.$FS
2839            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2840    
2841  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2842          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2843    
2844  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.$FS: ftl_input_code.$FS
2845          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2846          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2847    
2848  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2849          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2850    
2851    
2852  # ... SVD ...  # ... SVD ...
2853  svd: svd_taf  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2854  svd_taf_f: svd_taf_output.f          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2855            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2856    svdall: svd_touch svd_taf
2857    
2858    svd_taf: \$(OBJFILES)
2859            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2860    
2861            @echo "--->>> Only COMPILE svd code! <<<---"
2862            @echo "--->>> Assumes you previously <<<---"
2863            @echo "--->>> did make svdtaf        <<<---"
2864    
2865    svd_touch:
2866            @echo "--->>> Only COMPILE svd code! <<<---"
2867            @echo "--->>> Assumes you previously <<<---"
2868            @echo "--->>> did make svdtaf        <<<---"
2869            touch ad_taf_output.$FS ftl_taf_output.$FS
2870            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2871            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2872            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2873            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2874            -rm -f ftl_config.template
2875    
2876  svd_input_code.f: \$(SRCFILES)  EOF
         cat svd_config.template > AD_CONFIG.h  
         @make \$(AD_FLOW_FILES)  
         cat \$(AD_FLOW_FILES) \$(AD_FILES) > svd_input_code.f  
2877    
2878  svd_taf_output.f: svd_input_code.f  fi
         \$(TAF) \$(SVD_TAF_FLAGS) \$(TAF_EXTRA) svd_input_code.f  
         cat svd_input_code_ad.f | sed -f adjoint_sed > svd_taf_output.f  
2879    
2880  svd_taf: svd_taf_output.o \$(OBJFILES)  #===  for OpenAD  ========================
         \$(LINK) -o ${EXE_SVD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) svd_taf_output.o \$(LIBS)  
2881    
2882    if test "x$OPENAD" != x ; then
2883    
2884  #=========================================  # ============ begin OpenAD specific section ==============
2885    
2886    cat >>$MAKEFILE <<EOF
2887    
2888    # all the source files linked from the various locations:
2889    ALL_LINKED_FILES= \
2890    \$(F77_SRC_FILES) \
2891    \$(C_SRC_FILES) \
2892    \$(H_SRC_FILES) \
2893    \$(F90_SRC_FILES) \
2894    \$(SPECIAL_FILES)
2895    
2896    ifndef OPENADROOT
2897      \$(error "Error:  environment variable OPENADROOT not defined!")
2898    endif
2899    
2900    ifndef XAIFSCHEMAROOT
2901      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2902    endif
2903    
2904    ifndef XAIFBOOSTERROOT
2905      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2906    endif
2907    
2908    EOF
2909    
2910    echo "  Add the source list for common block to module conversion "
2911    echo >> $MAKEFILE
2912    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2913    for i in `cat ${OAD_CB2M_FILES}` ; do
2914      echo    " \\" >> $MAKEFILE
2915      printf " $i" >> $MAKEFILE
2916    done
2917    echo >> $MAKEFILE
2918    
2919    echo "  Add the source list for AD code generation"
2920    echo >> $MAKEFILE
2921    printf "AD_FILES = " >> $MAKEFILE
2922    for i in `cat ${OAD_CB2M_FILES}` ; do
2923      echo    " \\" >> $MAKEFILE
2924      printf " ${i}_mod.f$FS90" >> $MAKEFILE
2925    done
2926    AD_FILES=`cat adSrcFiles.tmp`
2927    for i in $AD_FILES ; do
2928      basename=${i%%.f}
2929      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
2930      if test -z "$toBeIgnored" ; then
2931        echo    " \\" >> $MAKEFILE
2932        printf " $i" >> $MAKEFILE
2933      fi
2934    done
2935    echo >> $MAKEFILE
2936    rm -f adSrcFiles.tmp
2937    
2938    cat >>$MAKEFILE <<EOF
2939    
2940    adAll: \$(EXE_AD)
2941    .PHONY: adAll
2942    
2943    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
2944    
2945    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
2946    
2947    .PHONY: adDepend
2948    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
2949            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2950            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2951            -rm -f makedepend.out
2952    
2953    OPENAD_SUPPORT_F90_SRC_FILES = \
2954    w2f__types.F90 \
2955    OAD_active.F90 \
2956    OAD_cp.F90 \
2957    OAD_rev.F90 \
2958    OAD_tape.F90        
2959    
2960    OPENAD_SUPPORT_C_SRC_FILES = \
2961    iaddr.c \
2962    timeRatio.c
2963    
2964    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
2965            cat \$^ > \$@
2966    
2967    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
2968            cat \$^ > \$@
2969    
2970    f95_test.out: f95_test_mods.f90 f95_test.f90
2971            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
2972            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
2973    
2974    AD_OBJ_FILES=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) all_mods.xb.x2w.w2f.pp.o  ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.o \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
2975    
2976    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(AD_OBJ_FILES)
2977            @echo Creating \$@ ...
2978            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES) \$(LIBS)
2979    
2980    # makefile debug rule
2981    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
2982    .PHONY: openad
2983    
2984    # create the module files
2985    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
2986            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
2987    
2988    # create the header files
2989    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
2990            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
2991    
2992    # change everybody else to use the new module files:
2993    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
2994            ../OAD_support/cb2mUseModules.bash $< ${MPI}
2995    
2996    # makefile debug rule
2997    small_f: \$(CB2M_F90_PP_SRC_FILES)
2998    .PHONY: small_f
2999    
3000    ad_output.txt: \$(EXE_AD)
3001            @printf 'linking data files ... '
3002            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3003            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3004            @printf 'running ... '
3005            @./\$(EXE_AD) > \$@
3006    
3007    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3008    ad_input_code.f$FS90: ../OAD_support/maxMinDefs.f \$(CB2M_AD_FILES)
3009            cat \$^ > \$@
3010    
3011    # strip all comments and blanks to reduce
3012    # the file size in order to reduce perl's memory requirements
3013    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3014            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3015    
3016    # mfef90 preprocessing
3017    # expand statement functions
3018    # expose mfef90 specific substring handling
3019    # add the w2f__types module
3020    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3021            ./mfef90 -r8 -z -F -N132 \$<
3022            mv \$<.B \$(basename \$<).B
3023            ./whirl2f -openad \$(basename \$<).B
3024            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3025    
3026    # canonicalizer
3027    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3028            ./preProcess.py -H -S \$< -o \$@
3029    
3030    # F -> WHIRL
3031    # note that the canonicalized version cuts off at col 72
3032    # doing this also for string constants which is ok as long
3033    # as we are in fixed mode and cut of exactly there.
3034    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3035    # characters respectively.
3036    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3037            ./mfef90 -r8 -z -F \$<
3038            mv \$<.B \$@
3039    
3040    # WHIRL -> XAIF
3041    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3042            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3043    
3044    # XAIF -> XAIF'
3045    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3046            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3047    
3048    # XAIF' -> WHIRL'
3049    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3050            ./xaif2whirl --debug 1 --structured ad_input_code_sf.w2f.pre.B \$<
3051    
3052    # WHIRL' -> F'
3053    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3054            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3055    
3056    # insert template directives
3057    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3058            ../OAD_support/insertTemplateDir.bash \$< \$@
3059    
3060    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3061    # postprocess F'
3062    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3063            ./postProcess.py -m r -i ../OAD_support/ad_inline.f -o \$@ \$<
3064    
3065    # extract all transformed modules
3066    all_mods.xb.x2w.w2f.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3067            cat \$< | sed -n '/MODULE /,/END MODULE/p' > \$@
3068    
3069    # remove the transformed globals module from the
3070    # transformed ad_input_code file
3071    # and remove for now the duplicate variables
3072    # and fix 2 data statements
3073    ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3074            cat \$< | sed '/MODULE /,/END MODULE/d' | sed '/^      INTEGER(w2f__i4) DOLOOP_UB/d' > \$@
3075    
3076    # setup some links
3077    %.xsd:
3078            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3079    
3080    mfef90:
3081            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3082    
3083    # link the support files:
3084    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3085            \$(LN) ../OAD_support/\$@ .
3086    
3087    whirl2xaif xaif2whirl:
3088            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3089    
3090    preProcess.py postProcess.py:
3091            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3092    
3093    whirl2f whirl2f_be:
3094            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3095    
3096    oadDriver:
3097            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3098    
3099    # ============ end OpenAD specific section ==============
3100    
3101  EOF  EOF
3102    
3103    fi
3104    
3105    #=========================================
3106    
3107  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3108      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3109  fi  fi
# Line 1450  for i in $KPPFILES ; do Line 3115  for i in $KPPFILES ; do
3115      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3116          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3117      fi      fi
3118      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3119  done  done
3120    
3121  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1460  for i in $NOOPTFILES ; do Line 3125  for i in $NOOPTFILES ; do
3125      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3126          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3127      fi      fi
3128      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3129      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3130  done  done
3131    
# Line 1473  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3138  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3138    
3139  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3140    
3141  #  Write the "template" files for the adjoint builds  # Create special header files
3142  cat >>AD_CONFIG.template <<EOF  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3143  C  WARNING: This file is automatically generated by genmake2 and  if test ! -f $PACKAGES_DOT_H ; then
3144  C    used by the Makefile rules.  Please DO NOT EDIT this file      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3145  C    unless you are CERTAIN that you know what you're doing.  else
3146        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
3147  #undef ALLOW_ADJOINT_RUN      RETVAL=$?
3148  #undef ALLOW_TANGENTLINEAR_RUN      if test "x$RETVAL" = x0 ; then
3149  #undef ALLOW_ECCO_OPTIMIZATION          rm -f $PACKAGES_DOT_H".tmp"
3150  EOF      else
3151  cat >>ad_config.template <<EOF          mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
3152  C  WARNING: This file is automatically generated by genmake2 and          mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3153  C    used by the Makefile rules.  Please DO NOT EDIT this file      fi
3154  C    unless you are CERTAIN that you know what you're doing.  fi
3155    if test ! -f AD_CONFIG.h ; then
3156  #undef ALLOW_ADJOINT_RUN      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
3157  #undef ALLOW_TANGENTLINEAR_RUN  fi
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >>ftl_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you're doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #undef ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >>svd_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you're doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #undef ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cp AD_CONFIG.template AD_CONFIG.h  
3158    
3159    
3160  #  Write the "state" for future records  #  Write the "state" for future records
3161  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
3162      echo -n "" > genmake_state      printf "" > genmake_state
3163      for i in $gm_state ; do      for i in $gm_state ; do
3164          t1="t2=\$$i"          t1="t2=\$$i"
3165          eval $t1          eval $t1

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