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revision 1.43 by edhill, Sun Nov 23 20:01:50 2003 UTC revision 1.187 by jmc, Wed Apr 15 22:21:03 2009 UTC
# Line 1  Line 1 
1  #!/bin/sh  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24      if test "x${RETVAL}" = x0 ; then  }
25          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"  
26          exit 99  # Search for particular CPP #cmds associated with MPI
27      fi  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1  test_for_mpi_in_cpp_eeoptions() {
29        cpp_options=$1
30        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38    }
39    
40    # Search for particular string in a file. Return 1 if detected, 0 if not
41    # usage: test_for_string_in_file file string
42    test_for_string_in_file() {
43        file=$1
44        strng=$2
45        grep -i "$strng" $file > /dev/null 2>&1
46      RETVAL=$?      RETVAL=$?
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
49            grep -i "$strng" $file
50          exit 99          exit 99
51      fi      fi
52      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
53  }  }
54    
55  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
# Line 62  expand_pkg_groups() { Line 75  expand_pkg_groups() {
75          done          done
76          PACKAGES=$new_packages          PACKAGES=$new_packages
77          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
78            return $matched
79      else      else
80          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
81      fi      fi
82  }  }
83    
84    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
85    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
86    check_for_broken_Ff()  {
87        #  Do we have defaults for $FS and/or $FS90 ?
88        tfs=f
89        tfs9=f90
90        if test "x$FS" != x ; then
91            tfs="$FS"
92        fi
93        if test "x$FS90" != x ; then
94            tfs9="$FS90"
95        fi
96    
97        #  First check the ability to create a *.F/.f pair.
98        cat <<EOF >> genmake_hello.F
99          program hello
100          write(*,*) 'hi'
101          stop
102          end
103    EOF
104        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
105        RETVAL=$?
106        if test "x$RETVAL" != x0 ; then
107            if test "x$FS" = x ; then
108                FS='for'
109                FS90='fr9'
110                check_for_broken_Ff
111            else
112                cat <<EOF 2>&1
113    ERROR: Your file system cannot distinguish between *.F and *.f files
114      (fails the "cp" test) and this program cannot find a suitable
115      replacement extension.  Please try a different build environment or
116      contact the <MITgcm-support@mitgcm.org> list for help.
117    
118    EOF
119                exit -1
120            fi
121            return
122        fi
123        rm -f genmake_hello.*
124    
125        #  Check the ability of ${MAKE} and ${LN} to use the current set
126        #  of extensions.
127        cat <<EOF >> genmake_hello.F
128          program hello
129          write(*,*) 'hi'
130          stop
131          end
132    EOF
133        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
134        cat <<EOF >> $MAKEFILE
135    .SUFFIXES:
136    .SUFFIXES: .$tfs .F
137    .F.$tfs:
138            $LN \$< \$@
139    EOF
140        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
141        RETVAL=$?
142        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
143            if test "x$FS" = x ; then
144                FS='for'
145                FS90='fr9'
146                check_for_broken_Ff
147            else
148                cat <<EOF 2>&1
149    ERROR: Your file system cannot distinguish between *.F and *.f files
150      (fails the "make/ln" test) and this program cannot find a suitable
151      replacement extension.  Please try a different build environment or
152      contact the <MITgcm-support@mitgcm.org> list for help.
153    
154    EOF
155                exit -1
156                return
157            fi
158        fi
159        rm -f genmake_hello.* $MAKEFILE
160        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
161    
162        #  If we make it here, use the extensions
163        FS=$tfs
164        FS90=$tfs9
165        return
166    }
167    
168    
169    look_for_makedepend()  {
170    
171        #  The "original" makedepend is part of the Imake system that is
172        #  most often distributed with XFree86 or with an XFree86 source
173        #  package.  As a result, many machines (eg. generic Linux) do not
174        #  have a system-default "makedepend" available.  For those
175        #  systems, we have two fall-back options:
176        #
177        #    1) a makedepend implementation shipped with the cyrus-imapd
178        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
179        #
180        #    2) a known-buggy xmakedpend shell script
181        #
182        #  So the choices are, in order:
183        #
184        #    1) use the user-specified program
185        #    2) use a system-wide default
186        #    3) locally build and use the cyrus implementation
187        #    4) fall back to the buggy local xmakedpend script
188        #
189        if test "x${MAKEDEPEND}" = x ; then
190            which makedepend > /dev/null 2>&1
191            RV0=$?
192            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
193            #  echo 'MAKEFILE="'$MAKEFILE'"'
194            cat <<EOF >> $MAKEFILE
195    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
196    #
197    #   Some "makedepend" implementations will die if they cannot
198    #   find a Makefile -- so this file is here to gives them an
199    #   empty one to find and parse.
200    EOF
201            cat <<EOF >> genmake_tc.f
202          program test
203          write(*,*) 'test'
204          stop
205          end
206    EOF
207            makedepend genmake_tc.f > /dev/null 2>&1
208            RV1=$?
209            test -f $MAKEFILE  &&  rm -f $MAKEFILE
210            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
211            if test "x${RV0}${RV1}" = x00 ; then
212                MAKEDEPEND=makedepend
213            else
214                echo "    a system-default makedepend was not found."
215                
216                #  Try to build the cyrus implementation
217                build_cyrus_makedepend
218                RETVAL=$?
219                if test "x$RETVAL" != x0 ; then
220                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
221                fi
222                rm -f ./genmake_cy_md
223            fi
224        else
225            #  echo "MAKEDEPEND=${MAKEDEPEND}"
226            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
227            RETVAL=$?
228            if test x"$RETVAL" = x0 ; then
229                build_cyrus_makedepend
230            fi
231        fi
232    }
233    
234    
235    build_cyrus_makedepend()  {
236        rm -f ./genmake_cy_md
237        (
238            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
239                &&  ./configure > /dev/null 2>&1  \
240                &&  make > /dev/null 2>&1
241            if test -x ./makedepend.exe ; then
242                $LN ./makedepend.exe ./makedepend
243            fi
244            ./makedepend ifparser.c > /dev/null 2>&1  \
245                &&  echo "true"
246        ) > ./genmake_cy_md
247        grep true ./genmake_cy_md > /dev/null 2>&1
248        RETVAL=$?
249        rm -f ./genmake_cy_md
250        if test "x$RETVAL" = x0 ; then
251            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
252            return 0
253        else
254            echo "WARNING: unable to build cyrus-imapd-makedepend"
255            return 1
256        fi
257    }
258    
259    
260    build_embed_encode()
261    {
262        printf "  building the embed-encode utility...  "
263        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265                echo
266                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267                echo
268                EMBED_SRC=f
269                return 1
270            fi
271            clist="cc gcc c89 $CC"
272            for ic in $clist ; do
273                comm="$ic -o encode_files encode_files.c"
274                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275                RETVAL=$?
276                if test "x$RETVAL" = x0 ; then
277                    echo "OK"
278                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279                    return 0
280                fi
281            done
282            echo
283            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
284            echo "      so it has been disabled"
285            echo
286            EMBED_SRC=f
287            return 1
288        fi
289        echo "OK"
290        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291    }
292    
293    
294  # Guess possible config options for this host  # Guess possible config options for this host
295  find_possible_configs()  {  find_possible_configs()  {
296    
297      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
298      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
299      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
300      PLATFORM=`echo $tmp3 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
301        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
302        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
303        PLATFORM=$tmp3
304        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
305      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
306      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
307            
# Line 93  find_possible_configs()  { Line 321  find_possible_configs()  {
321          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
322      fi      fi
323    
324      # makedepend is not always available      look_for_makedepend
325      if test "x${MAKEDEPEND}" = x ; then  
326        which makedepend >& /dev/null      #================================================================
327        RETVAL=$?      #  look for possible C compilers
328        if test "x${RETVAL}" = x1 ; then      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329           echo "    makedepend was not found. Using xmakedpend instead."      p_CC=
330           MAKEDEPEND='$(TOOLSDIR)/xmakedepend'      for c in $tmp ; do
331        fi          rm -f ./genmake_hello.c  ./genmake_hello
332            cat >> genmake_hello.c << EOF
333    #include <stdio.h>
334    int main(int argc, char **argv) {
335      printf("Hello!\n");
336      return 0;
337    }
338    EOF
339            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
340            RETVAL=$?
341            if test "x${RETVAL}" = x0 ; then
342                p_CC="$p_CC $c"
343            fi
344        done
345        rm -f ./genmake_hello.c ./genmake_hello
346        if test "x${p_CC}" = x ; then
347            cat 1>&2 <<EOF
348    
349    Error: No C compilers were found in your path.  Please specify one using:
350    
351        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
352        2) the CC or MITGCM_CC environment variables.
353    
354    EOF
355            exit 1
356        else
357            echo "  The possible C compilers found in your path are:"
358            echo "   "$p_CC
359            if test "x$CC" = x ; then
360                CC=`echo $p_CC | $AWK '{print $1}'`
361                echo "  Setting C compiler to: "$CC
362            fi
363      fi      fi
364    
365      # look for possible fortran compilers      #================================================================
366      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      #  look for possible FORTRAN compilers
367        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 129  Error: No Fortran compilers were found i Line 389  Error: No Fortran compilers were found i
389    
390      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
391      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
392      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
393    
394  EOF  EOF
395          exit 1          exit 1
396      else      else
397          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
398          echo "   "$p_FC          echo "   "$p_FC
         if test "x$FC" = x ; then  
             FC=`echo $p_FC | $AWK '{print $1}'`  
         fi  
399      fi      fi
400    
401      for i in $p_FC ; do      #  Use the first of the compilers found in the current PATH
402          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i      #  that has a correctly-named optfile
403          if test -r $p_OF ; then      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
404              OPTFILE=$p_OF          for i in $p_FC ; do
405              echo "  The options file:  $p_OF"              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
406              echo "    appears to match so we'll use it."              if test -r $OPTFILE ; then
407              break                  echo "  Setting OPTFILE to: "$OPTFILE
408          fi                  break
409      done              fi
410            done
411        fi
412    
413        if test "x$OPTFILE" = x ; then
414            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
415            if test ! -r $OPTFILE ; then
416                 echo "  I looked for the file "$OPTFILE" but did not find it"
417            fi
418        fi
419    #    echo "  The options file:  $p_OF"
420    #    echo "    appears to match so we'll use it."
421    #   for i in $p_FC ; do
422    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
423    #if test -r $p_OF ; then
424    #    OPTFILE=$p_OF
425    #    echo "  The options file:  $p_OF"
426    #    echo "    appears to match so we'll use it."
427    #    break
428    #fi
429    #   done
430      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
431          cat 1>&2 <<EOF          cat 1>&2 <<EOF
432    
# Line 208  get_pdepend_list()  { Line 485  get_pdepend_list()  {
485      . ./.pd_tmp      . ./.pd_tmp
486      rm -f ./.pd_tmp      rm -f ./.pd_tmp
487    
488      echo -n "PNAME = "${}      printf "PNAME = "${}
489  }  }
490    
491    
# Line 222  Usage: "$0" [OPTIONS] Line 499  Usage: "$0" [OPTIONS]
499      -help | --help | -h | --h      -help | --help | -h | --h
500            Print this help message and exit.            Print this help message and exit.
501    
502        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
503          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
504              Use "NAME" as the adoptfile.  By default, the file at
505              "tools/adjoint_options/adjoint_default" will be used.
506    
507      -nooptfile | --nooptfile      -nooptfile | --nooptfile
508        -optfile NAME | --optfile NAME | -of NAME | --of NAME        -optfile NAME | --optfile NAME | -of NAME | --of NAME
509        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
# Line 246  Usage: "$0" [OPTIONS] Line 528  Usage: "$0" [OPTIONS]
528        --makefile=NAME | -mf=NAME        --makefile=NAME | -mf=NAME
529            Call the makefile "NAME".  The default is "Makefile".            Call the makefile "NAME".  The default is "Makefile".
530    
531        -makedepend NAME | -md NAME
532          --makedepend=NAME | -md=NAME
533              Use "NAME" for the MAKEDEPEND program.
534    
535      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
536        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
537            Specify the location of the MITgcm ROOTDIR as "NAME".            Specify the location of the MITgcm ROOTDIR as "NAME".
# Line 282  Usage: "$0" [OPTIONS] Line 568  Usage: "$0" [OPTIONS]
568            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
569            "usual suspects" such as g77, f77, etc.            "usual suspects" such as g77, f77, etc.
570    
571        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
572              Use "NAME" as the C compiler.  By default, genmake
573              will search for a working compiler by trying a list of
574              "usual suspects" such as gcc, c89, cc, etc.
575    
576      -[no]ieee | --[no]ieee      -[no]ieee | --[no]ieee
577            Do or don't use IEEE numerics.  Note that this option            Do or don't use IEEE numerics.  Note that this option
578            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
579            is being used.            is being used.
580    
581        -ignoretime | -ignore_time | --ignoretime | --ignore_time
582              Ignore all the "wall clock" routines entirely.  This will
583              not in any way hurt the model results -- it simply means
584              that the code that checks how long the model spends in
585              various routines will give junk values.
586    
587        -ts | --ts
588              Produce timing information per timestep
589        -papis | --papis
590              Produce summary MFlop/s (and IPC) with PAPI per timestep
591        -pcls | --pcls
592              Produce summary MFlop/s etc. with PCL per timestep
593        -foolad | --foolad
594              Fool the AD code generator
595        -papi | --papi
596              Performance analysis with PAPI
597        -pcl | --pcl
598              Performance analysis with PCL
599        -hpmt | --hpmt
600              Performance analysis with the HPM Toolkit
601    
602        -gsl | --gsl
603              Use GSL to control floating point rounding and precision
604        -devel | --devel
605              Add additional warning and debugging flags for development
606    
607        -mpi | --mpi
608              Include MPI header files and link to MPI libraries
609        -mpi=PATH | --mpi=PATH
610              Include MPI header files and link to MPI libraries using MPI_ROOT
611              set to PATH. i.e. Include files from \$PATH/include, link to libraries
612              from \$PATH/lib and use binaries from \$PATH/bin.
613    
614        -omp | --omp
615              Activate OpenMP code + use Compiler option OMPFLAG
616        -omp=OMPFLAG | --omp=OMPFLAG
617              Activate OpenMP code + use Compiler option OMPFLAG
618    
619        -es | --es | -embed-source | --embed-source
620              Embed a tarball containing the full source code
621              (including the Makefile, etc.) used to build the
622              executable [off by default]
623    
624        -bash NAME
625              Explicitly specify the Bourne or BASH shell to use
626    
627    While it is most often a single word, the "NAME" variables specified    While it is most often a single word, the "NAME" variables specified
628    above can in many cases be a space-delimited string such as:    above can in many cases be a space-delimited string such as:
629    
# Line 307  EOF Line 644  EOF
644    
645  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
646  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
647    
648        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
649        if test ! "x$FC_NAMEMANGLE" = x ; then
650            return 0
651        fi
652    
653      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
654            
655      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
# Line 324  WARNING: Please contact <MITgcm-support@ Line 667  WARNING: Please contact <MITgcm-support@
667  EOF  EOF
668          return 1          return 1
669      fi      fi
670      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
671      RETVAL=$?      RETVAL=$?
672      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
673          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 336  WARNING: Please contact <MITgcm-support@ Line 679  WARNING: Please contact <MITgcm-support@
679  EOF  EOF
680          return 1          return 1
681      fi      fi
682      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
683        subroutine tcall( string )        subroutine tcall( string )
684        character*(*) string        character*(*) string
685        call tsub( string )        call tsub( string )
686        end        end
687  EOF  EOF
688      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
689      RETVAL=$?      RETVAL=$?
690      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
691          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 354  WARNING: Please contact <MITgcm-support@ Line 697  WARNING: Please contact <MITgcm-support@
697  EOF  EOF
698          return 1          return 1
699      fi      fi
700      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
701      RETVAL=$?      RETVAL=$?
702      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
703          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 408  void FC_NAMEMANGLE(cloc) ( double *curti Line 751  void FC_NAMEMANGLE(cloc) ( double *curti
751   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
752  }  }
753  EOF  EOF
754      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
755        echo $COMM >> genmake_warnings
756        $COMM >> genmake_warnings 2>&1
757      RET_C=$?      RET_C=$?
758      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
759        program hello        program hello
760        Real*8 wtime        REAL*8 wtime
761        external cloc        external cloc
762        call cloc(wtime)        call cloc(wtime)
763        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
764        end program hello        end
765  EOF  EOF
766      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
767        echo $COMM >> genmake_warnings
768        $COMM >> genmake_warnings 2>&1
769      RET_F=$?      RET_F=$?
770      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
771      RETVAL=$?      RETVAL=$?
772      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
773          HAVE_CLOC=t          HAVE_CLOC=t
# Line 430  EOF Line 777  EOF
777  }  }
778    
779    
780    check_HAVE_SIGREG()  {
781        if test ! "x$HAVE_SIGREG" = x ; then
782            return
783        fi
784        get_fortran_c_namemangling
785        cat <<EOF > genmake_tc_1.c
786    $FC_NAMEMANGLE
787    #include <stdlib.h>
788    #include <stdio.h>
789    #include <signal.h>
790    #include <errno.h>
791    #include <ucontext.h>
792    
793    int * ip;
794    
795    static void killhandler(
796        unsigned int sn, siginfo_t  si, struct ucontext *sc )
797    {
798        *ip = *ip + 1;
799        return;
800    }
801    
802    void FC_NAMEMANGLE(sigreg) (int * aip)
803    {
804        struct sigaction s;
805        ip = aip;
806        s.sa_flags = SA_SIGINFO;
807        s.sa_sigaction = (void *)killhandler;
808        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
809            printf("Sigaction returned error = %d\n", errno);
810            exit(0);
811        }
812        return;
813    }
814    EOF
815        COMM="$CC $CFLAGS -c genmake_tc_1.c"
816        echo $COMM >> genmake_warnings
817        $COMM >> genmake_warnings 2>&1
818        RET_C=$?
819        cat <<EOF > genmake_tc_2.$FS
820          program hello
821          integer anint
822          common /iv/ anint
823          external sigreg
824          call sigreg(anint)
825          end
826    EOF
827        echo >> genmake_warnings
828        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
829        cat genmake_tc_2.$FS >> genmake_warnings
830        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
831        echo $COMM >> genmake_warnings
832        $COMM >> genmake_warnings 2>&1
833        RETVAL=$?
834        if test "x$RETVAL" = x0 ; then
835            HAVE_SIGREG=t
836            DEFINES="$DEFINES -DHAVE_SIGREG"
837        fi
838        rm -f genmake_tc*
839    }
840    
841    
842    check_HAVE_SETRLSTK()  {
843        if test "x$HAVE_SETRLSTK" = xt ; then
844            DEFINES="$DEFINES -DHAVE_SETRLSTK"
845            return
846        fi  
847        if test ! "x$HAVE_SETRLSTK" = x ; then
848            return
849        fi
850        get_fortran_c_namemangling
851        cat <<EOF > genmake_tc_1.c
852    $FC_NAMEMANGLE
853    #include <sys/time.h>
854    #include <sys/resource.h>
855    #include <unistd.h>
856    void FC_NAMEMANGLE(setrlstk) ()
857    {
858        struct rlimit rls;
859        rls.rlim_cur = RLIM_INFINITY;
860        rls.rlim_max = RLIM_INFINITY;
861        setrlimit(RLIMIT_STACK, &rls);
862        return;
863    }
864    EOF
865        COMM="$CC $CFLAGS -c genmake_tc_1.c"
866        echo $COMM >> genmake_warnings
867        $COMM >> genmake_warnings 2>&1
868        RET_C=$?
869        cat <<EOF > genmake_tc_2.$FS
870          program hello
871          external setrlstk
872          call setrlstk()
873          end
874    EOF
875        echo >> genmake_warnings
876        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
877        cat genmake_tc_2.$FS >> genmake_warnings
878        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
879        echo $COMM >> genmake_warnings
880        $COMM >> genmake_warnings 2>&1
881        RETVAL=$?
882        if test "x$RETVAL" = x0 ; then
883            HAVE_SETRLSTK=t
884            DEFINES="$DEFINES -DHAVE_SETRLSTK"
885        fi
886        rm -f genmake_tc*
887    }
888    
889    
890    check_HAVE_STAT()  {
891        get_fortran_c_namemangling
892        cat <<EOF > genmake_tc_1.c
893    $FC_NAMEMANGLE
894    #include <stdio.h>
895    #include <stdlib.h>
896    #include <unistd.h>
897    #include <sys/stat.h>
898    #include <sys/types.h>
899    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
900    {
901        char name[512];
902        struct stat astat;
903    
904        name[0] = 'a'; name[1] = '\0';
905        if (! stat(name, &astat))
906            *nbyte = (int)(astat.st_size);
907        else
908            *nbyte = -1;
909    }
910    EOF
911        COMM="$CC $CFLAGS -c genmake_tc_1.c"
912        echo $COMM >> genmake_warnings
913        $COMM >> genmake_tc.log 2>&1
914        RET_C=$?
915        cat <<EOF > genmake_tc_2.$FS
916          program hello
917          integer nbyte
918          call tfsize(nbyte)
919          print *," HELLO WORLD", nbyte
920          end
921    EOF
922        echo >> genmake_warnings
923        echo "running: check_HAVE_STAT()" >> genmake_warnings
924        cat genmake_tc_2.$FS >> genmake_warnings
925        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
926        echo $COMM >> genmake_warnings
927        $COMM >> genmake_tc.log 2>&1
928        RETVAL=$?
929        if test "x$RETVAL" = x0 ; then
930            HAVE_STAT=t
931            DEFINES="$DEFINES -DHAVE_STAT"
932        fi
933        rm -f genmake_tc*
934    }
935    
936    
937    check_netcdf_libs()  {
938        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
939            return
940        fi
941        echo >> genmake_warnings
942        echo "running: check_netcdf_libs()" >> genmake_warnings
943        cat <<EOF > genmake_tnc.F
944          program fgennc
945    #include "netcdf.inc"
946    EOF
947        if test ! "x$MPI" = x ; then
948            echo '#include "mpif.h"' >> genmake_tnc.F
949        fi
950        cat <<EOF >> genmake_tnc.F
951          integer iret, ncid, xid
952          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
953          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
954          iret = nf_def_dim(ncid, 'X', 11, xid)
955          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
956          iret = nf_close(ncid)
957          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
958          end
959    EOF
960        echo "===  genmake_tnc.F  ===" > genmake_tnc.log
961        cat genmake_tnc.F >> genmake_tnc.log
962        echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
963        RET_CPP=f
964        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
965        echo "$COMM" >> genmake_tnc.log
966        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
967        if test "x$RET_CPP" = xf ; then
968            echo "  WARNING: CPP failed to pre-process the netcdf test." \
969                >> genmake_tnc.log
970            echo "    Please check that \$INCLUDES is properly set." \
971                >> genmake_tnc.log
972        fi
973        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
974        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
975        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
976            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
977        RET_COMPILE=$?
978        cat genmake_tnc.log >> genmake_warnings
979    
980        #EH3  Remove test program execution for machines that either disallow
981        #EH3  execution or cannot support it (eg. cross-compilers)
982        #EH3
983        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
984        #EH3 RETVAL=$?
985        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
986    
987        if test "x$RET_COMPILE" = x0 ; then
988            HAVE_NETCDF=t
989        else
990            # try again with "-lnetcdf" added to the libs
991            echo "try again with added '-lnetcdf'" > genmake_tnc.log
992            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
993            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
994            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
995            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
996                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
997                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
998            RET_COMPILE=$?
999            cat genmake_tnc.log >> genmake_warnings
1000            if test "x$RET_COMPILE" = x0 ; then
1001                LIBS="$LIBS -lnetcdf"
1002                HAVE_NETCDF=t
1003            else
1004            # try again with "-lnetcdff" added to the libs
1005                echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1006                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1007                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1008                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1009                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1010                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1011                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1012                RET_COMPILE=$?
1013                cat genmake_tnc.log >> genmake_warnings
1014                if test "x$RET_COMPILE" = x0 ; then
1015                    LIBS="$LIBS -lnetcdff -lnetcdf"
1016                    HAVE_NETCDF=t
1017                fi
1018            fi
1019        fi
1020        rm -f genmake_tnc*
1021    }
1022    
1023    
1024    
1025    ###############################################################################
1026    #   Sequential part of script starts here
1027    ###############################################################################
1028    
1029  #  Set defaults here  #  Set defaults here
1030  COMMANDL="$0 $@"  COMMANDL="$0 $@"
1031    
# Line 437  PLATFORM= Line 1033  PLATFORM=
1033  LN=  LN=
1034  S64=  S64=
1035  KPP=  KPP=
1036  FC=  #FC=
1037    #CC=gcc
1038    #CPP=
1039  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
1040  DEFINES=  DEFINES=
1041  PACKAGES=  PACKAGES=
1042  ENABLE=  ENABLE=
1043  DISABLE=  DISABLE=
1044  MAKEFILE=  # MAKEFILE=
1045  MAKEDEPEND=  # MAKEDEPEND=
1046  PDEPEND=  PDEPEND=
1047  DUMPSTATE=t  DUMPSTATE=t
1048  PDEFAULT=  PDEFAULT=
1049  OPTFILE=  OPTFILE=
1050  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1051  FFLAGS=  FFLAGS=
1052  FOPTIM=  FOPTIM=
1053    FEXTRAFLAGS=
1054    USE_EXTENDED_SRC=
1055    EXTENDED_SRC_FLAG=
1056  CFLAGS=  CFLAGS=
1057  KFLAGS1=  KFLAGS1=
1058  KFLAGS2=  KFLAGS2=
1059    #LDADD=
1060  LIBS=  LIBS=
1061  KPPFILES=  KPPFILES=
1062  NOOPTFILES=  NOOPTFILES=
1063  NOOPTFLAGS=  NOOPTFLAGS=
1064    MPI=
1065    MPIPATH=
1066    OMP=
1067    OMPFLAG=
1068    TS=
1069    PAPIS=
1070    PCLS=
1071    FOOLAD=
1072    PAPI=
1073    PCL=
1074    HPMT=
1075    GSL=
1076    DEVEL=
1077    HAVE_TEST_L=
1078    
1079  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1080  HAVE_SYSTEM=  HAVE_SYSTEM=
1081  HAVE_FDATE=  HAVE_FDATE=
1082  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1083  HAVE_CLOC=  HAVE_CLOC=
1084    # HAVE_SETRLSTK=
1085    HAVE_STAT=
1086    HAVE_NETCDF=
1087    HAVE_ETIME=
1088    IGNORE_TIME=
1089    
1090  MODS=  MODS=
1091  TOOLSDIR=  TOOLSDIR=
1092  SOURCEDIRS=  SOURCEDIRS=
1093  INCLUDEDIRS=  INCLUDEDIRS=
1094  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
1095    
1096    G2ARGS=
1097    BASH=
1098  PWD=`pwd`  PWD=`pwd`
1099  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1100  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1101  THISHOSTNAME=`hostname`  EMBED_SRC=
1102    THISHOST=`hostname`
1103  THISCWD=`pwd`  THISCWD=`pwd`
1104  THISDATE=`date`  THISDATE=`date`
1105    THISUSER=`echo $USER`
1106    THISVER=
1107  MACHINE=`uname -a`  MACHINE=`uname -a`
1108  EXECUTABLE=  EXECUTABLE=
1109  EXEHOOK=  EXEHOOK=
# Line 488  IEEE= Line 1113  IEEE=
1113  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1114      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1115  fi  fi
1116    FS=
1117    FS90=
1118    
1119  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1120  AD_OPTFILE=  AD_OPTFILE=
# Line 505  TAMC_EXTRA= Line 1132  TAMC_EXTRA=
1132    
1133  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1134  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1135  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"
1136    
1137  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1138  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1139  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1140  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1141  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1142  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
1143    
1144  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1145  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 535  EOF Line 1162  EOF
1162    
1163  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1164  gm_local="genmake_local"  gm_local="genmake_local"
1165  for i in . $MODS ; do  printf "  getting local config information:  "
1166      if test -r $i/$gm_local ; then  if test -f $gm_local ; then
         . $i/$gm_local  
         break  
     fi  
 done  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
1167      echo "using $gm_local"      echo "using $gm_local"
1168      . $gm_local      . $gm_local
1169      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
# Line 551  else Line 1172  else
1172      echo "none found"      echo "none found"
1173  fi  fi
1174    
1175  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1176  #OPTIONS=  #OPTIONS=
1177  #n=0  #n=0
1178  #for i ; do  #for i ; do
# Line 563  fi Line 1184  fi
1184  #done  #done
1185  #parse_options  #parse_options
1186  ac_prev=  ac_prev=
1187  for ac_option ; do  for ac_option in "$@" ; do
1188    
1189        G2ARGS="$G2ARGS \"$ac_option\""
1190    
1191      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1192      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 586  for ac_option ; do Line 1209  for ac_option ; do
1209          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1210              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1211                    
1212          -adoptfile | --adoptfile | -ad | --ad)          -adoptfile | --adoptfile | -adof | --adof)
1213              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1214          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1215              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
# Line 606  for ac_option ; do Line 1229  for ac_option ; do
1229          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1230              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1231                    
1232            -bash | --bash)
1233                ac_prev=BASH ;;
1234            -bash=* | --bash=*)
1235                BASH=$ac_optarg ;;
1236            
1237            -makedepend | --makedepend | -md | --md)
1238                ac_prev=MAKEDEPEND ;;
1239            -makedepend=* | --makedepend=* | -md=* | --md=*)
1240                MAKEDEPEND=$ac_optarg ;;
1241            
1242          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
1243              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1244          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
# Line 647  for ac_option ; do Line 1280  for ac_option ; do
1280  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1281  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1282  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1283                        
1284            -cc | --cc)
1285                ac_prev=CC ;;
1286            -cc=* | --cc=*)
1287                CC=$ac_optarg ;;
1288            
1289          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1290              ac_prev=FC ;;              ac_prev=FC ;;
1291          -fc=* | --fc=*)          -fc=* | --fc=*)
1292              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1293                    
1294            -fs | --fs)
1295                ac_prev=FS ;;
1296            -fs=* | --fs=*)
1297                FS=$ac_optarg ;;
1298            
1299            -fs90 | --fs90)
1300                ac_prev=FS90 ;;
1301            -fs90=* | --fs90=*)
1302                FS90=$ac_optarg ;;
1303            
1304          -ieee | --ieee)          -ieee | --ieee)
1305              IEEE=true ;;              IEEE=true ;;
1306          -noieee | --noieee)          -noieee | --noieee)
1307              IEEE= ;;              IEEE= ;;
1308    
1309            -ts | --ts)
1310                TS=true ;;
1311            -papis | --papis)
1312                PAPIS=true ;;
1313            -pcls | --pcls)
1314                PCLS=true ;;
1315            -foolad | --foolad)
1316                FOOLAD=true ;;
1317            -papi | --papi)
1318                PAPI=true ;;
1319            -pcl | --pcl)
1320                PCL=true ;;
1321            -hpmt | --hpmt)
1322                HPMT=true ;;
1323    
1324            -gsl | --gsl)
1325                GSL=true ;;
1326    
1327            -devel | --devel)
1328                DEVEL=true ;;
1329    
1330            -mpi | --mpi)
1331                MPI=true ;;
1332            -mpi=* | --mpi=*)
1333                MPIPATH=$ac_optarg
1334                MPI=true ;;
1335                    
1336  #       -jam | --jam)          -omp | --omp)
1337  #           JAM=1 ;;              OMP=true ;;
1338  #       -nojam | --nojam)          -omp=* | --omp=*)
1339  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1340                OMP=true ;;
1341                    
1342          -ds | --ds)          -ds | --ds)
1343              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 675  for ac_option ; do Line 1351  for ac_option ; do
1351              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1352          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1353              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1354            
1355            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1356                IGNORE_TIME="-DIGNORE_TIME" ;;
1357    
1358            -es | --es | -embed-source | --embed-source)
1359                EMBED_SRC=t ;;
1360    
1361          -*)          -*)
1362              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 690  for ac_option ; do Line 1372  for ac_option ; do
1372            
1373  done  done
1374    
1375    
1376  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1377      echo      echo
1378      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1379      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1380      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1381      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/devel_HOWTO/"
1382      echo      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1383      echo "  for directions on how to setup and use the new \"genmake2\" input"      echo "WARNING: ignore \"./.genmakerc\" and continue."
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
1384      echo      echo
1385  fi  fi
1386    
1387    #  Find the MITgcm ${ROOTDIR}
1388  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1389      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1390        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1391          ROOTDIR=".."          ROOTDIR=".."
1392      else      else
1393          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1394              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1395                  ROOTDIR=$d                  ROOTDIR=$d
1396                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1397                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1398                  break                  break
1399              fi              fi
# Line 727  if test ! -d ${ROOTDIR} ; then Line 1411  if test ! -d ${ROOTDIR} ; then
1411      exit 1      exit 1
1412  fi  fi
1413    
1414    #  Find the MITgcm ${THISVER}
1415    version_file="${ROOTDIR}/doc/tag-index"
1416    if test -f $version_file ; then
1417        THISVER=`grep '^checkpoint' $version_file | head -1`
1418    #-  remove ./BUILD_INFO.h file if older than version_file
1419        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1420            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1421            rm -f ./BUILD_INFO.h
1422        fi
1423    fi
1424    
1425    if test "x$MAKEFILE" = x ; then
1426        MAKEFILE="Makefile"
1427    fi
1428    
1429  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1430  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1431      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 743  if test "x$OPTFILE" != xNONE ; then Line 1442  if test "x$OPTFILE" != xNONE ; then
1442          . "$OPTFILE"          . "$OPTFILE"
1443          RETVAL=$?          RETVAL=$?
1444          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1445              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1446              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1447              exit 1              exit 1
1448          fi          fi
# Line 770  if test "x${AD_OPTFILE}" != xNONE ; then Line 1469  if test "x${AD_OPTFILE}" != xNONE ; then
1469          . "$AD_OPTFILE"          . "$AD_OPTFILE"
1470          RETVAL=$?          RETVAL=$?
1471          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1472              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1473              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1474              exit 1              exit 1
1475          fi          fi
# Line 783  if test "x${AD_OPTFILE}" != xNONE ; then Line 1482  if test "x${AD_OPTFILE}" != xNONE ; then
1482      fi      fi
1483  fi  fi
1484    
1485  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #====================================================================
1486    #  Set default values if not set by the optfile
1487    #
1488    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1489  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1490    if test ! "x$BASH" = x ; then
1491        # add a trailing space so that it works within the Makefile syntax (see below)
1492        BASH="$BASH "
1493    fi
1494  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1495      cat <<EOF 1>&2      cat <<EOF 1>&2
1496    
# Line 795  Error: no Fortran compiler: please speci Line 1501  Error: no Fortran compiler: please speci
1501  EOF  EOF
1502      exit 1      exit 1
1503  fi  fi
1504    if test "x$CC" = x ; then
1505        CC=cc
1506    #     cat <<EOF 1>&2
1507    # Error: no C compiler: please specify using one of the following:
1508    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1509    #   2) the "-cc=XXX" command-line option
1510    #   3) the "./genmake_local" file
1511    # EOF
1512    #     exit 1
1513    fi
1514  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1515      LINK=$FC      LINK=$FC
1516  fi  fi
 if test "x$CPP" = x ; then  
     CPP="cpp"  
 fi  
1517  if test "x$MAKE" = x ; then  if test "x$MAKE" = x ; then
1518      MAKE="make"      MAKE="make"
1519  fi  fi
1520    if test "x$CPP" = x ; then
1521        CPP=cpp
1522    fi
1523    #EH3 === UGLY ===
1524    #  The following is an ugly little hack to check for $CPP in /lib/ and
1525    #  it should eventually be replaced with a more general function that
1526    #  searches a combo of the user's path and a list of "usual suspects"
1527    #  to find the correct location for binaries such as $CPP.
1528    for i in " " "/lib/" ; do
1529        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1530    done
1531    #EH3 === UGLY ===
1532  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1533  RETVAL=$?  RETVAL=$?
1534  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 820  EOF Line 1545  EOF
1545  else  else
1546      rm -f test_cpp      rm -f test_cpp
1547  fi  fi
1548  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
     MAKEDEPEND=makedepend  
 fi  
1549  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1550      LN="ln -s"      LN="ln -s"
1551  fi  fi
# Line 838  Error: The command "ln -s" failed -- ple Line 1561  Error: The command "ln -s" failed -- ple
1561  EOF  EOF
1562      exit 1      exit 1
1563  fi  fi
1564    test -L genmake_tlink > /dev/null 2>&1
1565    RETVAL=$?
1566    if test "x$RETVAL" = x0 ; then
1567        HAVE_TEST_L=t
1568    fi
1569  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1570    
1571    #  Check for broken *.F/*.f handling and fix if possible
1572    check_for_broken_Ff
1573    
1574    if test ! "x$MPI" = x ; then
1575          echo "  Turning on MPI cpp macros"
1576          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1577    fi
1578    if test ! "x$OMP" = x ; then
1579          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1580          FFLAGS="$FFLAGS $OMPFLAG"
1581          F90FLAGS="$F90FLAGS $OMPFLAG"
1582          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1583    fi
1584    
1585    if test ! "x$TS" = x ; then
1586          echo "  Turning on timing per timestep"
1587          if test ! "x$FOOLAD" = x ; then
1588                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1589          else
1590                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1591          fi
1592          PACKAGES="$PACKAGES showflops"
1593    fi
1594    if test ! "x$PAPIS" = x ; then
1595          echo "  Turning on PAPI flop summary per timestep"
1596          echo "  Please make sure PAPIINC, PAPILIB are defined"
1597          if test ! "x$FOOLAD" = x ; then
1598                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1599          else
1600                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1601          fi
1602          INCLUDES="$INCLUDES $PAPIINC"
1603          LIBS="$LIBS $PAPILIB"
1604          PACKAGES="$PACKAGES showflops"
1605    fi
1606    if test ! "x$PCLS" = x ; then
1607          echo "  Turning on PCL counter summary per timestep"
1608          echo "  Please make sure PCLINC, PCLLIB are defined"
1609          if test ! "x$FOOLAD" = x ; then
1610                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1611          else
1612                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1613          fi
1614          INCLUDES="$INCLUDES $PCLINC"
1615          LIBS="$LIBS $PCLLIB"
1616          PACKAGES="$PACKAGES showflops"
1617    fi
1618    if test ! "x$PAPI" = x ; then
1619          if test ! "x$PAPIS" = x ; then
1620              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1621              echo "  Sticking with PAPI flop summary per timestep!"
1622          else
1623              echo "  Turning on performance analysis with PAPI"
1624              echo "  Please make sure PAPIINC, PAPILIB are defined"
1625              DEFINES="$DEFINES -DUSE_PAPI"
1626              INCLUDES="$INCLUDES $PAPIINC"
1627              LIBS="$LIBS $PAPILIB"
1628          fi
1629    fi
1630    if test ! "x$PCL" = x ; then
1631          if test ! "x$PCLS" = x ; then
1632              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1633              echo "  Sticking with PCL flop summary per timestep!"
1634          else
1635              echo "  Turning on performance analysis with PCL"
1636              echo "  Please make sure PCLINC, PCLLIB are defined"
1637              DEFINES="$DEFINES -DUSE_PCL"
1638              INCLUDES="$INCLUDES $PCLINC"
1639              LIBS="$LIBS $PCLLIB"
1640          fi
1641    fi
1642    if test ! "x$HPMT" = x ; then
1643          if test ! "x$PAPI" = x ; then
1644              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1645              echo "  Sticking with PAPI!"
1646          else if test ! "x$PCL" = x ; then
1647              echo "  PCL and the HPM Toolkit cannot co-exist!"
1648              echo "  Sticking with PCL!"
1649          else
1650              echo "  Turning on performance analysis with the HPM Toolkit"
1651              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1652              DEFINES="$DEFINES -DUSE_LIBHPM"
1653              INCLUDES="$INCLUDES $HPMTINC"
1654              LIBS="$LIBS $HPMTLIB"
1655          fi
1656          fi
1657    fi
1658    if test ! "x$GSL" = x ; then
1659          echo "  Turning on use of GSL to control floating point calculations"
1660          echo "  Please make sure GSLINC, GSLLIB are defined"
1661          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1662          INCLUDES="$INCLUDES $GSLINC"
1663          LIBS="$LIBS $GSLLIB"
1664    fi
1665    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1666    if test ! "x$USE_EXTENDED_SRC" = x ; then
1667          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1668          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1669    fi
1670    
1671  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1672  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1673  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1674        program hello        program hello
1675        call system('echo hi')        call system('echo hi')
1676        end        end
1677  EOF  EOF
1678  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1679  RETVAL=$?  RETVAL=$?
1680  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1681      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 860  else Line 1687  else
1687  fi  fi
1688  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1689    
1690  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1691  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1692        program hello        program hello
1693        CHARACTER(128) string        CHARACTER*(128) string
1694        string = ' '        string = ' '
1695        call fdate( string )        call fdate( string )
1696        print *, string        print *, string
1697        end        end
1698  EOF  EOF
1699  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1700  RETVAL=$?  RETVAL=$?
1701  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1702      HAVE_FDATE=t      HAVE_FDATE=t
# Line 881  else Line 1708  else
1708  fi  fi
1709  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1710    
1711  echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1712  check_HAVE_CLOC  cat > genmake_tcomp.$FS <<EOF
1713  if test "x$HAVE_CLOC" != x ; then        program hello
1714          REAL*4 ACTUAL, TARRAY(2)
1715          EXTERNAL ETIME
1716          REAL*4 ETIME
1717          actual = etime( tarray )
1718          print *, tarray
1719          end
1720    EOF
1721    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1722    RETVAL=$?
1723    if test "x$RETVAL" = x0 ; then
1724        HAVE_ETIME=t
1725        DEFINES="$DEFINES -DHAVE_ETIME"
1726      echo "yes"      echo "yes"
1727  else  else
1728        HAVE_ETIME=
1729      echo "no"      echo "no"
1730  fi  fi
1731  echo "$FC_NAMEMANGLE" > FC_NAMEMANGLE.h.template  rm -f genmake_tcomp*
1732  cmp FC_NAMEMANGLE.h FC_NAMEMANGLE.h.template > /dev/null 2>&1  
1733  RETVAL=$?  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1734  if test "x$RETVAL" != x0 ; then  check_HAVE_CLOC
1735      mv -f FC_NAMEMANGLE.h.template FC_NAMEMANGLE.h  if test "x$HAVE_CLOC" != x ; then
1736        echo "yes"
1737    else
1738        echo "no"
1739        if test "x$EMBED_SRC" = xt ; then
1740            echo "    WARNING: you requested file embedding but it has"
1741            echo "      been disabled since C code cannot be called"
1742            EMBED_SRC=
1743        fi
1744    fi
1745    rm -f genmake_t*
1746    
1747    printf "  Can we unlimit the stack size using $FC...  "
1748    check_HAVE_SETRLSTK
1749    if test "x$HAVE_SETRLSTK" = xt ; then
1750        echo "yes"
1751    else
1752        echo "no"
1753    fi
1754    rm -f genmake_t*
1755    
1756    printf "  Can we register a signal handler using $FC...  "
1757    check_HAVE_SIGREG
1758    if test "x$HAVE_SIGREG" = xt ; then
1759        echo "yes"
1760    else
1761        echo "no"
1762  fi  fi
1763  rm -f genmake_t*  rm -f genmake_t*
1764    
1765    printf "  Can we use stat() through C calls...  "
1766    check_HAVE_STAT
1767    if test "x$HAVE_STAT" != x ; then
1768        echo "yes"
1769    else
1770        echo "no"
1771    fi
1772    rm -f genmake_t*
1773    
1774    printf "  Can we create NetCDF-enabled binaries...  "
1775    check_netcdf_libs
1776    if test "x$HAVE_NETCDF" != x ; then
1777        echo "yes"
1778    else
1779        echo "no"
1780    fi
1781    DEFINES="$DEFINES $IGNORE_TIME"
1782    
1783    if test "x$EMBED_SRC" = xt ; then
1784        build_embed_encode
1785    fi
1786    if test "x$EMBED_SRC" = xt ; then
1787        ENABLE="$ENABLE embed_files"
1788    fi
1789    
1790    
1791  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1792  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1793    MPI_LNKF=
1794  for d in $MODS ; do  for d in $MODS ; do
1795      if test ! -d $d ; then      if test ! -d $d ; then
1796          echo          echo
1797          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1798          exit 1          exit 1
1799      else      else
1800          echo -n " $d"          printf "$d "
1801          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1802          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1803            #-------------------------------------------------------
1804            # Put special links so that MPI specific files are used
1805            MPI_FILES=`(cd $d ; find . -name "*_mpi" -print)`
1806            for i in $MPI_FILES ; do
1807              ii=`echo $i | sed 's:^\./::'`
1808              name=`echo $ii | sed 's:_mpi::' `
1809              if test "x$MPI" = x ; then
1810              # NO: We undo an _mpi symbolically linked file
1811                if test -L $name ; then
1812                  cmp $name "$d/$ii" > /dev/null 2>&1
1813                  RETVAL=$?
1814                  if test "x$RETVAL" = x0 ; then
1815                    printf "Un-linking $name ; "
1816                    rm -f $name
1817                  fi
1818                fi
1819              else
1820              # YES: We symbolically link this file (with conditions if already there)
1821                if test -L $name ; then
1822                  cmp $d/$ii $name > /dev/null 2>&1
1823                  RETVAL=$?
1824                  yy=0 ;
1825                  for xx in $MPI_LNKF ; do if test $xx = $name ; then yy=1 ; fi ; done
1826                  if test "x$RETVAL" != x0 -a $yy = 0 ; then
1827                  # remove sym-link if different and has not just been linked
1828                    printf "Un-link + "
1829                    rm -f $name
1830                  fi
1831                  if test "x$RETVAL" = x0 ; then
1832                  # if identical, keep sym-link and keep record of it
1833                    MPI_LNKF="$MPI_LNKF $name"
1834                  fi
1835                fi
1836                if ! test -f $name ; then
1837                  # make sym-link and keep record of it
1838                    printf "Linking $ii to $name ; "
1839                    ln -sf $d/$ii $name
1840                    MPI_LNKF="$MPI_LNKF $name"
1841                fi
1842              fi
1843            done
1844            #-------------------------------------------------------
1845      fi      fi
1846  done  done
1847  echo  echo
1848    #echo "MPI_LNKF='$MPI_LNKF'"
1849    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1850  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1851      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1852  fi  fi
1853    
1854  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1855      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1856        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1857          EXEDIR=../exe          EXEDIR=../exe
1858      else      else
1859          EXEDIR=.          EXEDIR=.
# Line 935  if test "x${TOOLSDIR}" = x ; then Line 1868  if test "x${TOOLSDIR}" = x ; then
1868      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1869  fi  fi
1870  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1871      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1872      exit 1      exit 1
1873  fi  fi
1874  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1875      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1876        RETVAL=$?
1877        if test "x${RETVAL}" = x0 ; then
1878            S64='$(TOOLSDIR)/set64bitConst.sh'
1879        else
1880            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1881            RETVAL=$?
1882            if test "x${RETVAL}" = x0 ; then
1883                S64='$(TOOLSDIR)/set64bitConst.csh'
1884            else
1885                cat <<EOF
1886    
1887    ERROR: neither of the two default scripts:
1888    
1889        ${TOOLSDIR}/set64bitConst.sh
1890        ${TOOLSDIR}/set64bitConst.csh
1891    
1892      are working so please check paths or specify (with \$S64) a
1893      working version of this script.
1894    
1895    EOF
1896                exit 1
1897            fi
1898        fi
1899  fi  fi
1900    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1901    
1902  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1903    
# Line 955  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1912  if test -r $ROOTDIR"/eesupp/src/Makefile
1912          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1913      else      else
1914          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1915          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1916          exit 1          exit 1
1917      fi      fi
1918  fi  fi
1919    
1920    #same for pkg/exch2 and pkg/regrid
1921    for pdir in exch2 regrid ; do
1922        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1923            echo "  Making source files in pkg/${pdir} from templates"
1924            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1
1925            RETVAL=$?
1926            if test "x${RETVAL}" = x0 ; then
1927                rm -f make_${pdir}.errors
1928            else
1929                echo "Error: problem encountered while building source files in pkg/${pdir}:"
1930                cat make_${pdir}.errors 1>&2
1931                exit 1
1932            fi
1933        fi
1934    done
1935    
1936  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1937  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1938      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 1015  else Line 1988  else
1988          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1989          RETVAL=$?          RETVAL=$?
1990          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1991              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1992              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1993              exit 1              exit 1
1994          fi          fi
# Line 1023  else Line 1996  else
1996              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1997          done          done
1998          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1999          expand_pkg_groups          RET=1
2000            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2001          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
2002      fi      fi
2003  fi  fi
2004    
2005  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2006    for i in $PACKAGES ; do
2007        echo $i >> ./.tmp_pack
2008    done
2009    for i in `grep  "-" ./.tmp_pack` ; do
2010        j=`echo $i | sed 's/[-]//'`
2011        DISABLE="$DISABLE $j"
2012    done
2013  pack=  pack=
2014  for p in $PACKAGES ; do  for p in $PACKAGES ; do
2015      addit="t"      addit="t"
# Line 1045  PACKAGES="$pack" Line 2026  PACKAGES="$pack"
2026  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2027  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
2028  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2029    # Test if each explicitly referenced package exists
2030  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2031      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
2032        if test ! -d "$ROOTDIR/pkg/$j" ; then
2033          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
2034          exit 1          exit 1
2035      fi      fi
2036      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2037  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
2038  PACKAGES=  PACKAGES=
2039  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
2040      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2041  done  done
2042    rm -f ./.tmp_pack
2043  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
2044    
2045    #  Check for package MNC: if NetCDF is available, then build the MNC
2046    #  template files ; otherwise, delete mnc from the list of packages.
2047    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
2048    RETVAL=$?
2049    if test "x$RETVAL" = x0 ; then
2050        if test "x$HAVE_NETCDF" != xt ; then
2051            cat <<EOF
2052    
2053    *********************************************************************
2054    WARNING: the "mnc" package was enabled but tests failed to compile
2055      NetCDF applications.  Please check that:
2056    
2057      1) NetCDF is correctly installed for this compiler and
2058      2) the LIBS variable (within the "optfile") specifies the correct
2059           NetCDF library to link against.
2060    
2061      Due to this failure, the "mnc" package is now DISABLED.
2062    *********************************************************************
2063    
2064    EOF
2065            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2066            DISABLE="$DISABLE mnc"
2067        else
2068            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2069            RETVAL=$?
2070            if test "x${RETVAL}" = x0 ; then
2071                rm -f make_mnc.errors
2072            else
2073                echo "Error: problem encountered while building source files in pkg/mnc:"
2074                cat make_mnc.errors 1>&2
2075                exit 1
2076            fi
2077        fi
2078    fi
2079    
2080    #  Check for package PROFILES: if NetCDF is not available,
2081    #  then delete profiles from the list of available packages.
2082    echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1
2083    RETVAL=$?
2084    if test "x$RETVAL" = x0 ; then
2085        if test "x$HAVE_NETCDF" != xt ; then
2086            cat <<EOF
2087    
2088    *********************************************************************
2089    WARNING: the "profiles" package was enabled but tests failed to
2090      compile NetCDF applications.  Please check that:
2091    
2092      1) NetCDF is correctly installed for this compiler and
2093      2) the LIBS variable (within the "optfile") specifies the correct
2094           NetCDF library to link against.
2095    
2096      Due to this failure, the "profiles" package is now DISABLED.
2097    *********************************************************************
2098    
2099    EOF
2100            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2101            DISABLE="$DISABLE profiles"
2102        fi
2103    fi
2104    
2105  echo "  applying package dependency rules"  echo "  applying package dependency rules"
2106  ck=  ck=
2107  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
2108      i=0      i=0
2109      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2110      rtot=$nname      rtot=$nname
2111      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2112    
2113          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2114          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1100  while test "x$ck" != xtt ; do Line 2142  while test "x$ck" != xtt ; do
2142    
2143          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2144          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2145                #echo "   " $pname ": need to add :" $dname
2146              in_dis="f"              in_dis="f"
2147              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2148                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1124  while test "x$ck" != xtt ; do Line 2167  while test "x$ck" != xtt ; do
2167              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2168              exit 1              exit 1
2169          fi          fi
2170          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2171            #i=$(( $i + 1 ))
2172      done      done
2173      ck=$ck"t"      ck=$ck"t"
2174  done  done
# Line 1143  for i in $PACKAGES ; do Line 2187  for i in $PACKAGES ; do
2187      fi      fi
2188  done  done
2189    
   
2190  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2191  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
 cat <<EOF >$PACKAGES_DOT_H".tmp"  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
   
 C  Packages disabled by genmake:  
 EOF  
2192  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2193  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2194  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2195  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2196  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2197  all_pack=  all_pack=
2198    DISABLED_PACKAGES=
2199  for n in $names ; do  for n in $names ; do
2200      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2201          has_pack="f"          has_pack="f"
# Line 1174  for n in $names ; do Line 2206  for n in $names ; do
2206              fi              fi
2207          done          done
2208          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2209              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2210              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2211          fi          fi
2212      fi      fi
2213  done  done
2214  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2215  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2216      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2217      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2218  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2219    
2220  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2221      case $i in      case $i in
2222          aim_v23)          aim_v23)
2223              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2224              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
2225              ;;              ;;
2226      esac      esac
2227  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2228    
2229  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
2230    
2231  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
2232  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2233  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2234      STANDARDDIRS="eesupp model"      STANDARDDIRS="eesupp model"
2235  fi  fi
2236  for d in $STANDARDDIRS ; do  if test "x$STANDARDDIRS" != x ; then
2237      adr="$ROOTDIR/$d/src"      for d in $STANDARDDIRS ; do
2238      if test ! -d $adr ; then          adr="$ROOTDIR/$d/src"
2239          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
2240          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2241          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2242      else              exit 1
2243          SOURCEDIRS="$SOURCEDIRS $adr"          else
2244      fi              SOURCEDIRS="$SOURCEDIRS $adr"
2245      adr="$ROOTDIR/$d/inc"          fi
2246      if test ! -d $adr ; then          adr="$ROOTDIR/$d/inc"
2247          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
2248          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2249          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2250      else              exit 1
2251          INCLUDEDIRS="$INCLUDEDIRS $adr"          else
2252      fi              INCLUDEDIRS="$INCLUDEDIRS $adr"
2253  done          fi
2254        done
2255    fi
2256    
2257  echo "  Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2258  echo "    of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
2259  CPP_OPTIONS=  CPP_OPTIONS=
2260    CPP_EEOPTIONS=
2261  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
2262    names=`ls -1 "$ROOTDIR/pkg"`
2263  for i in $spaths ; do  for i in $spaths ; do
2264      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
2265      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
2266          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2267          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2268          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2269            for n in $names ; do
2270                test_for_package_in_cpp_options $CPP_OPTIONS $n
2271            done
2272        fi
2273        try="$i/CPP_EEOPTIONS.h"
2274        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2275            echo "    found CPP_EEOPTIONS=\"$try\""
2276            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2277    #**** not yet enabled ****
2278    #        test_for_mpi_in_cpp_eeoptions $try
2279    #**** not yet enabled ****
2280            CPP_EEOPTIONS="$try"
2281      fi      fi
2282  done  done
2283  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
2284      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2285      exit 1      exit 1
2286  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
2287    
2288  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2289  #  compiler.  #  compiler.
2290  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2291      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2292  fi  fi
2293  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2294  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2295      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2296      for j in $list_files ; do      for j in $list_files ; do
2297          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2298      done      done
2299  done  done
2300    if test ! "x"$FS = "x.f" ; then
2301  cat <<EOF > adjoint_sed      cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2302  s/call adopen(/call adopen ( mythid,\\      mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2303       \&           /g  fi
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
2304    
2305  echo  echo
2306  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2307  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2308  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2309      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2310          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2311      fi      fi
2312  done  done
2313    
2314    if test ! "x$DIVA" = x ; then
2315        echo "  Creating the pseudo-MPI include directory"
2316        INCLUDES="-I./mpi_headers $INCLUDES"
2317        rm -rf ./mpi_headers
2318        mkdir -p ./mpi_headers
2319    
2320        if test "x$MPIINCLUDEDIR" = x ; then
2321            if test "x$MPIHOME" = x ; then
2322                MPIHOME='/usr'
2323            fi
2324            MPIINCLUDEDIR='$MPIHOME/include'
2325        fi
2326        
2327        if test -r $MPIINCLUDEDIR/mpif.h ; then
2328            for i in $MPI_HEADER_FILES; do
2329                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2330            done
2331    
2332            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2333        else
2334            echo " We cannot create a copy of mpif.h!"
2335    #       exit -1
2336        fi
2337    fi
2338    
2339  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2340  rm -rf .links.tmp  rm -rf .links.tmp
2341  mkdir .links.tmp  mkdir .links.tmp
2342    touch .links.tmp/foo
2343    if test ! -r ".links.tmp/foo" ; then
2344        echo
2345        echo "ERROR : something is wrong with your directory permissions or"
2346        echo "   your user file-creation mask (\"umask\") since creating a"
2347        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2348        echo "   not working.  Please try setting your umask to something"
2349        echo "   sane such as:"
2350        echo
2351        echo "      umask 0002"
2352        echo
2353        echo "   and please verify that you have the proper permissions for"
2354        echo "   creating sub-directories and then reading files created"
2355        echo "   within them."
2356        echo
2357        exit 1
2358    fi
2359    rm -f .links.tmp/foo
2360    
2361    if test "x$OPENAD" != x ; then
2362        OAD_DONT_COMPILE="/dev/null"
2363        OAD_DONT_TRANSFORM="/dev/null"
2364        OAD_KEEP_ORIGINAL="/dev/null"
2365        OAD_CB2M_FILES="/dev/null"
2366        echo "  looking for dontCompile file:  "
2367        for i in "." $MODS ; do
2368            if test -r $i"/dontCompile" ; then
2369                OAD_DONT_COMPILE=$i"/dontCompile"
2370                echo "     found $OAD_DONT_COMPILE"
2371                break
2372            fi
2373        done
2374        echo "  looking for dontTransform file:  "
2375        for i in "." $MODS ; do
2376            if test -r $i"/dontTransform" ; then
2377                OAD_DONT_TRANSFORM=$i"/dontTransform"
2378                echo "     found $OAD_DONT_TRANSFORM"
2379                break
2380            fi
2381        done
2382        echo "  looking for keepOriginal file:  "
2383        for i in "." $MODS ; do
2384            if test -r $i"/keepOriginal" ; then
2385                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2386                echo "     found $OAD_KEEP_ORIGINAL"
2387                break
2388            fi
2389        done
2390        echo "  looking for cb2mFiles:  "
2391        for i in "." $MODS ; do
2392            if test -r $i"/cb2mFiles" ; then
2393                OAD_CB2M_FILES=$i"/cb2mFiles"
2394                echo "     found $OAD_CB2M_FILES"
2395                break
2396            fi
2397        done
2398        echo "   OpenAD exceptions:  "
2399    fi
2400    
2401  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2402  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2403  echo -n 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2404  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2405  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2406  echo -n 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2407  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2408    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2409  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2410  for d in $alldirs ; do  for d in $alldirs ; do
2411      deplist=      deplist=
2412      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2413      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2414        if test "x$OPENAD" != x ; then
2415            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2416        fi
2417      for sf in $sfiles ; do      for sf in $sfiles ; do
2418          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2419              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2420                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  ignore_f=f
2421                  touch .links.tmp/$sf                  case $d/$sf in
2422                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2423                  case $extn in                          ignore_f=t
2424                      F)                          ;;
2425                          echo    " \\"  >> srclist.inc                    ./AD_CONFIG.h)
2426                          echo -n " $sf" >> srclist.inc                          ignore_f=t
2427                            ;;
2428                      ./FC_NAMEMANGLE.h)
2429                            ignore_f=t
2430                            ;;
2431                      ./BUILD_INFO.h)
2432                            ignore_f=t
2433                            ;;
2434                      ./EMBEDDED_FILES.h)
2435                            ignore_f=t
2436                            ;;
2437                      *)
2438                            #  For the local directory *ONLY*,
2439                            #  ignore all soft-links
2440                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2441                                ignore_f=t
2442                            else
2443                                touch .links.tmp/$sf
2444                                deplist="$deplist $sf"
2445                            fi
2446                            ;;
2447                    esac
2448                    if test "x$ignore_f" = xf ; then
2449                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2450                        case $extn in
2451                          F)
2452                            echo    " \\"  >> F77srclist.tmp
2453                            printf " $sf" >> F77srclist.tmp
2454                            if test "x$OPENAD" != x ; then
2455                                basename=${sf%%.F}
2456                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2457                                if test -z "$isAD" ; then
2458                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2459                                    if test -z "$toBeIgnored" ; then
2460                                        echo    " \\"  >> nonADF77srclist.tmp
2461                                        printf " $sf" >> nonADF77srclist.tmp
2462                                    else
2463                                        echo "    not to be compiled   :  $sf"
2464                                    fi
2465                                else # file is initially listed as an AD file we want to exclude it
2466                                     # or we want to retain the untransformed version
2467                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2468                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2469                                    if test -n "$notToBeTransformed"; then
2470                                        echo "    not to be transformed:  $sf"
2471                                    fi
2472                                    if test -n "$untransformedVersionToBeKept" ; then
2473                                        echo "    original to be kept  :  $sf"
2474                                    fi    
2475                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2476                                        echo    " \\"  >> nonADF77srclist.tmp
2477                                        printf " $sf" >> nonADF77srclist.tmp
2478                                    fi
2479                                fi
2480                            fi
2481                          ;;                          ;;
2482                      F90)                      F90)
2483                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2484                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2485                          ;;                          ;;
2486                      c)                      c)
2487                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2488                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2489                          ;;                          ;;
2490                      h)                      h)
2491                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2492                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2493                          ;;                          ;;
2494                      flow)                      flow)
2495                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.tmp
2496                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.tmp
2497                          ;;                          ;;
2498                  esac                     esac
2499                    fi
2500              fi              fi
2501          fi          fi
2502      done      done
2503      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2504          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2505            echo "" >> srclinks.tmp
2506          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2507          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2508          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2509    # This may happen when make thinks that a header file has to be "remade"
2510    # because a module it depends on has changed.  In this case we do nothing.
2511            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2512          fi
2513      fi      fi
2514  done  done
2515  rm -rf .links.tmp  rm -rf .links.tmp
2516  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2517  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2518  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2519  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2520  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2521    echo "" >> ad_flow_files.tmp
2522    
2523  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2524      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
2525  fi  fi
2526  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1370  echo "#    $MACHINE" >> $MAKEFILE Line 2529  echo "#    $MACHINE" >> $MAKEFILE
2529  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2530  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2531  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2532  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
2533  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2534  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2535    
2536  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2537  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
2538  EXE_SVD=$EXECUTABLE"_svd"  EXE_SVD=$EXECUTABLE"_svd"
2539    
2540  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2541    #
2542    # OPTFILE="$OPTFILE"
2543  #  #
2544  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2545  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 1412  EXE_AD      = ${EXE_AD} Line 2573  EXE_AD      = ${EXE_AD}
2573  EXE_FTL     = ${EXE_FTL}  EXE_FTL     = ${EXE_FTL}
2574  EXE_SVD     = ${EXE_SVD}  EXE_SVD     = ${EXE_SVD}
2575    
2576    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2577    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2578    
2579    # These files are created by Makefile
2580    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2581  EOF  EOF
2582    
2583  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2584        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2585    else
2586        echo "EMBEDDED_FILES = " >>$MAKEFILE
2587    fi
2588    
2589  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2590  # Unix ln (link)  # Unix ln (link)
2591  LN = ${LN}  LN = ${LN}
# Line 1429  KPP = ${KPP} Line 2599  KPP = ${KPP}
2599  FC = ${FC}  FC = ${FC}
2600  # Fortran compiler  # Fortran compiler
2601  F90C = ${F90C}  F90C = ${F90C}
2602    # C compiler
2603    CC = ${CC}
2604  # Link editor  # Link editor
2605  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2606    
2607  # Defines for CPP  # Defines for CPP
2608  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1440  INCLUDES = ${INCLUDES} Line 2612  INCLUDES = ${INCLUDES}
2612  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2613  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2614  # Optim./debug for FC  # Optim./debug for FC
2615  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2616  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2617  # Optim./debug for FC  # Optim./debug for FC
2618  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2619  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2620    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2621  # Flags for CC  # Flags for CC
2622  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2623  # Files that should not be optimized  # Files that should not be optimized
2624  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2625  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2626  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2627  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2628  # Name of the Mekfile  # Name of the Mekfile
2629  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2630    
2631  EOF  EOF
2632    
2633  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2634  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2635  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2636  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2637  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2638  echo               >> $MAKEFILE  cat ad_flow_files.tmp   >> $MAKEFILE
 echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  
 echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  
 echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2639    
2640  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
 rm -f ad_flow_files.inc  
2641    
2642  cat >>$MAKEFILE <<EOF  echo >> $MAKEFILE
2643    
2644  .SUFFIXES:  # add definitions for preprocessed sources
2645  .SUFFIXES: .o .f .p .F .c .F90 .f90  # and note that not all systems allow case sensitive extensions
2646    # hence the $FS and $FS90 here.
2647    # for fixed format f90 files we use ff90 or FF90 resp
2648    # but these are not expected to be the original source files
2649    
2650    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2651    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2652    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2653    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2654    echo >> $MAKEFILE
2655    echo '.SUFFIXES:' >> $MAKEFILE
2656    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2657    
2658    cat >>$MAKEFILE <<EOF
2659    
2660  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2661  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2662            @echo Creating \$@ ...
2663          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2664  depend:  depend:
2665          @make links          @make links
2666          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2667          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2668            -rm -f makedepend.out
2669    
2670    lib: libmitgcmuv.a
2671    
2672    libmitgcmuv.a: \$(OBJFILES)
2673            ar rcv libmitgcmuv.a \$(OBJFILES)
2674            ar d   libmitgcmuv.a main.o
2675    
2676  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2677    
2678  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2679    
2680  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2681          @printf 'running ... '          @printf 'running ... '
2682          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2683    
2684  clean:  clean:
2685          -cat AD_CONFIG.template > AD_CONFIG.h          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2686          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.o
2687            -rm -rf *.$FS *.flowdir
2688            -rm -rf *.f$FS90 *_mod.h *_mod.F90 *.FF90 *.mod-whirl ad_input*
2689            -rm -rf temp.sed
2690  Clean:  Clean:
2691          @make clean          @make clean
2692          @make cleanlinks          @make cleanlinks
2693          -rm -f Makefile.bak genmake_state genmake_*optfile genmake_warnings make.log          -rm -f \$(SPECIAL_FILES)
2694            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log f90mkdepend.log *.bak
2695            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2696  CLEAN:  CLEAN:
2697          @make Clean          @make Clean
2698          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2699          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2700          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2701          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2702            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2703            -rm -rf mnc_test_*
2704    
2705  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2706  makefile:  makefile:
2707          ${0} $@          $THIS_SCRIPT $G2ARGS
2708  cleanlinks:  cleanlinks:
2709          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2710    
2711  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are created by make
2712  .F.f:  ${PACKAGES_DOT_H}:
2713            @echo Creating \$@ ...
2714            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2715    AD_CONFIG.h:
2716            @echo Creating \$@ ...
2717            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2718    FC_NAMEMANGLE.h:
2719            @echo Creating \$@ ...
2720            echo "$FC_NAMEMANGLE" > \$@
2721    
2722    BUILD_INFO.h:
2723            @echo Creating \$@ ...
2724    EOF
2725    
2726    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2727    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2728    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2729    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2730    
2731    if test "x$EMBED_SRC" = xt ; then
2732        cat >>$MAKEFILE <<EOF
2733    
2734    decode_files.o : EMBEDDED_FILES.h
2735    
2736    ##  \$(F77_PP_SRC_FILES)
2737    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2738            @echo Creating \$@ ...
2739            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2740            -rm -f all_fF.tar.gz
2741            -gzip all_fF.tar
2742    
2743    EMBEDDED_FILES.h : all_fF.tar.gz
2744            @echo Creating \$@ ...
2745            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2746    
2747    EOF
2748    fi
2749    
2750    cat >>$MAKEFILE <<EOF
2751    
2752    # The normal chain of rules is (  .F - .$FS - .o  )
2753    
2754    ## This nullifies any default implicit rules concerning these two file types:
2755    ## %.o : %.F
2756    
2757    .F.$FS:
2758          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2759  .f.o:  .$FS.o:
2760          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2761  .F90.f90:  .F90.$FS90:
2762          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2763  .f90.o:  .FF90.f$FS90:
2764            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2765    .$FS90.o:
2766          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2767    .f$FS90.o:
2768            cp \$< \$(basename  \$<).f90
2769            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2770  .c.o:  .c.o:
2771          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2772    .flow.flowdir:
2773            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2774    
2775  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2776  .F.p:  .F.p:
2777          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2778  .p.f:  .p.$FS:
2779          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2780    
2781    EOF
2782    
2783  #=========================================  #=========================================
2784  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2785    #===  for TAMC/TAF  ======================
2786    
2787    if test "x$OPENAD" = x ; then
2788    
2789    cat >>$MAKEFILE <<EOF
2790    
2791  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2792  TAF            = ${TAF}  TAF            = ${TAF}
# Line 1545  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2801  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2801  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2802  for i in $ad_vars ; do  for i in $ad_vars ; do
2803      name=$i      name=$i
2804      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2805      eval $t1      eval $t1
2806      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2807      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2808  done  done
2809    
2810  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2811  echo >> $MAKEFILE  echo >> $MAKEFILE
2812  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2813  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2814  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2815      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2816      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2817  done  done
2818  echo >> $MAKEFILE  echo >> $MAKEFILE
2819  rm -f ad_files  rm -f adSrcFiles.tmp
2820    
2821  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2822    
2823  # ... AD ...  # ... AD ...
2824  adall: ad_taf  adall: \$(EXE_AD)
2825  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
2826  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2827    
2828  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2829            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2830          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2831          @make \$(F77FILES)          -rm -f ad_config.template
2832          @make \$(AD_FLOW_FILES)          @make \$(F77_PP_SRC_FILES)
2833          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          @make \$(FLOFILES)
2834            cat \$(FLOFILES) \$(AD_FILES) > ad_input_code.$FS
2835  ad_taf_output.f: ad_input_code.f  
2836          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
2837          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2838            ls -l ad_input_code_ad.$FS
2839            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2840    
2841  adtafonly:  adtafonly:
2842          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2843          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
2844            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2845  ad_taf: ad_taf_output.o \$(OBJFILES)  
2846          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2847            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2848  ad_tamc_output.f: ad_input_code.f  
2849          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f  ad_tamc_output.$FS: ad_input_code.$FS
2850          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2851            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2852    
2853  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2854          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2855    
2856    adonlyfwd:
2857            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2858    
2859    adtrick:
2860            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2861    
2862  # ... FTL ...  # ... FTL ...
2863  ftlall: ftl_taf  ftlall: ftl_taf
2864  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
2865  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
2866    
2867  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2868            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2869          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2870          @make \$(F77FILES)          -rm -f ftl_config.template
2871            @make \$(F77_PP_SRC_FILES)
2872          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2873          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2874    
2875  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
2876          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2877          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_taf_output.f          ls -l ftl_input_code_ftl.$FS
2878            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2879    
2880  ftltafonly:  ftltafonly:
2881          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2882          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_taf_output.f          ls -l ftl_input_code_ftl.$FS
2883            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2884    
2885  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2886          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2887    
2888  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.$FS: ftl_input_code.$FS
2889          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2890          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2891    
2892  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2893          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2894    
2895    
2896  # ... SVD ...  # ... SVD ...
2897  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2898  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2899            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2900    svdall: svd_touch svd_taf
2901    
2902  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
2903          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2904    
2905            @echo "--->>> Only COMPILE svd code! <<<---"
2906            @echo "--->>> Assumes you previously <<<---"
2907            @echo "--->>> did make svdtaf        <<<---"
2908    
2909    svd_touch:
2910            @echo "--->>> Only COMPILE svd code! <<<---"
2911            @echo "--->>> Assumes you previously <<<---"
2912            @echo "--->>> did make svdtaf        <<<---"
2913            touch ad_taf_output.$FS ftl_taf_output.$FS
2914            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2915            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2916            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2917            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2918            -rm -f ftl_config.template
2919    
2920    EOF
2921    
2922    fi
2923    
2924  #=========================================  #===  for OpenAD  ========================
2925    
2926    if test "x$OPENAD" != x ; then
2927    
2928    # ============ begin OpenAD specific section ==============
2929    
2930    cat >>$MAKEFILE <<EOF
2931    
2932    # all the source files linked from the various locations:
2933    ALL_LINKED_FILES= \
2934    \$(F77_SRC_FILES) \
2935    \$(C_SRC_FILES) \
2936    \$(H_SRC_FILES) \
2937    \$(F90_SRC_FILES) \
2938    \$(SPECIAL_FILES)
2939    
2940    ifndef OPENADROOT
2941      \$(error "Error:  environment variable OPENADROOT not defined!")
2942    endif
2943    
2944    ifndef XAIFSCHEMAROOT
2945      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2946    endif
2947    
2948    ifndef XAIFBOOSTERROOT
2949      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2950    endif
2951    
2952  EOF  EOF
2953    
2954    echo "  Add the source list for common block to module conversion "
2955    echo >> $MAKEFILE
2956    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2957    for i in `cat ${OAD_CB2M_FILES}` ; do
2958      echo    " \\" >> $MAKEFILE
2959      printf " $i" >> $MAKEFILE
2960    done
2961    echo >> $MAKEFILE
2962    
2963    echo "  Add the source list for AD code generation"
2964    echo >> $MAKEFILE
2965    printf "AD_FILES = " >> $MAKEFILE
2966    for i in `cat ${OAD_CB2M_FILES}` ; do
2967      echo    " \\" >> $MAKEFILE
2968      printf " ${i}_mod.f$FS90" >> $MAKEFILE
2969    done
2970    AD_FILES=`cat adSrcFiles.tmp`
2971    for i in $AD_FILES ; do
2972      basename=${i%%.f}
2973      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
2974      if test -z "$toBeIgnored" ; then
2975        echo    " \\" >> $MAKEFILE
2976        printf " $i" >> $MAKEFILE
2977      fi
2978    done
2979    echo >> $MAKEFILE
2980    rm -f adSrcFiles.tmp
2981    
2982    cat >>$MAKEFILE <<EOF
2983    
2984    adAll: \$(EXE_AD)
2985    .PHONY: adAll
2986    
2987    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
2988    
2989    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
2990    
2991    .PHONY: adDepend
2992    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
2993            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2994            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2995            -rm -f makedepend.out
2996    
2997    OPENAD_SUPPORT_F90_SRC_FILES = \
2998    w2f__types.F90 \
2999    OAD_active.F90 \
3000    OAD_cp.F90 \
3001    OAD_rev.F90 \
3002    OAD_tape.F90        
3003    
3004    OPENAD_SUPPORT_C_SRC_FILES = \
3005    iaddr.c \
3006    timeRatio.c
3007    
3008    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3009            cat \$^ > \$@
3010    
3011    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3012            cat \$^ > \$@
3013    
3014    f95_test.out: f95_test_mods.f90 f95_test.f90
3015            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3016            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3017    
3018    AD_OBJ_FILES=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) all_mods.xb.x2w.w2f.pp.o  ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.o \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3019    
3020    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(AD_OBJ_FILES)
3021            @echo Creating \$@ ...
3022            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES) \$(LIBS)
3023    
3024    # makefile debug rule
3025    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3026    .PHONY: openad
3027    
3028    # create the module files
3029    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3030            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3031    
3032    # create the header files
3033    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3034            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3035    
3036    # change everybody else to use the new module files:
3037    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3038            ../OAD_support/cb2mUseModules.bash $< ${MPI}
3039    
3040    # makefile debug rule
3041    small_f: \$(CB2M_F90_PP_SRC_FILES)
3042    .PHONY: small_f
3043    
3044    ad_output.txt: \$(EXE_AD)
3045            @printf 'linking data files ... '
3046            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3047            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3048            @printf 'running ... '
3049            @./\$(EXE_AD) > \$@
3050    
3051    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3052    ad_input_code.f$FS90: ../OAD_support/maxMinDefs.f \$(CB2M_AD_FILES)
3053            cat \$^ > \$@
3054    
3055    # strip all comments and blanks to reduce
3056    # the file size in order to reduce perl's memory requirements
3057    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3058            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3059    
3060    # mfef90 preprocessing
3061    # expand statement functions
3062    # expose mfef90 specific substring handling
3063    # add the w2f__types module
3064    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3065            ./mfef90 -r8 -z -F -N132 \$<
3066            mv \$<.B \$(basename \$<).B
3067            ./whirl2f -openad \$(basename \$<).B
3068            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3069    
3070    # canonicalizer
3071    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3072            ./preProcess.py -H -S \$< -o \$@
3073    
3074    # F -> WHIRL
3075    # note that the canonicalized version cuts off at col 72
3076    # doing this also for string constants which is ok as long
3077    # as we are in fixed mode and cut of exactly there.
3078    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3079    # characters respectively.
3080    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3081            ./mfef90 -r8 -z -F \$<
3082            mv \$<.B \$@
3083    
3084    # WHIRL -> XAIF
3085    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3086            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3087    
3088    # XAIF -> XAIF'
3089    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3090            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3091    
3092    # XAIF' -> WHIRL'
3093    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3094            ./xaif2whirl --debug 1 --structured ad_input_code_sf.w2f.pre.B \$<
3095    
3096    # WHIRL' -> F'
3097    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3098            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3099    
3100    # insert template directives
3101    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3102            ../OAD_support/insertTemplateDir.bash \$< \$@
3103    
3104    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3105    # postprocess F'
3106    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 multi-pp.pl \$(PPEXTRAS:.F=.f)
3107            perl multi-pp.pl -inline=../OAD_support/ad_inline.f \$<
3108            # the postprocessor still gets the name wrong
3109            cat \$<.pp | sed 's/RETURN//' > \$@
3110    
3111    # extract all transformed modules
3112    all_mods.xb.x2w.w2f.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3113            cat \$< | sed -n '/MODULE /,/END MODULE/p' > \$@
3114    
3115    # remove the transformed globals module from the
3116    # transformed ad_input_code file
3117    # and remove for now the duplicate variables
3118    # and fix 2 data statements
3119    ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3120            cat \$< | sed '/MODULE /,/END MODULE/d' | sed '/^      INTEGER(w2f__i4) DOLOOP_UB/d' > \$@
3121    
3122    # setup some links
3123    %.xsd:
3124            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3125    
3126    mfef90:
3127            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3128    
3129    # link the support files:
3130    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3131            \$(LN) ../OAD_support/\$@ .
3132    
3133    whirl2xaif xaif2whirl:
3134            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3135    
3136    %.pl:
3137            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3138    
3139    preProcess.py:
3140            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3141    
3142    whirl2f whirl2f_be:
3143            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3144    
3145    oadDriver:
3146            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3147    
3148    # ============ end OpenAD specific section ==============
3149    
3150    EOF
3151    
3152    fi
3153    
3154    #=========================================
3155    
3156  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3157      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3158  fi  fi
# Line 1647  for i in $KPPFILES ; do Line 3164  for i in $KPPFILES ; do
3164      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3165          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3166      fi      fi
3167      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3168  done  done
3169    
3170  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1657  for i in $NOOPTFILES ; do Line 3174  for i in $NOOPTFILES ; do
3174      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3175          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3176      fi      fi
3177      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3178      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3179  done  done
3180    
# Line 1670  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3187  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3187    
3188  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3189    
3190  #  Write the "template" files for the adjoint builds  # Create special header files
3191  cat >AD_CONFIG.template <<EOF  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3192  C  WARNING: This file is automatically generated by genmake2 and  if test ! -f $PACKAGES_DOT_H ; then
3193  C    used by the Makefile rules.  Please DO NOT EDIT this file      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3194  C    unless you are CERTAIN that you know what you are doing.  else
3195        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
3196  #undef ALLOW_ADJOINT_RUN      RETVAL=$?
3197  #undef ALLOW_TANGENTLINEAR_RUN      if test "x$RETVAL" = x0 ; then
3198  #undef ALLOW_ECCO_OPTIMIZATION          rm -f $PACKAGES_DOT_H".tmp"
3199  EOF      else
3200  cat >ad_config.template <<EOF          mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
3201  C  WARNING: This file is automatically generated by genmake2 and          mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3202  C    used by the Makefile rules.  Please DO NOT EDIT this file      fi
3203  C    unless you are CERTAIN that you know what you are doing.  fi
3204    if test ! -f AD_CONFIG.h ; then
3205  #define ALLOW_ADJOINT_RUN      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
3206  #undef ALLOW_TANGENTLINEAR_RUN  fi
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >ftl_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you are doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #define ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >svd_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you are doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #undef ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cp AD_CONFIG.template AD_CONFIG.h  
3207    
3208    
3209  #  Write the "state" for future records  #  Write the "state" for future records
3210  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
3211      echo -n "" > genmake_state      printf "" > genmake_state
3212      for i in $gm_state ; do      for i in $gm_state ; do
3213          t1="t2=\$$i"          t1="t2=\$$i"
3214          eval $t1          eval $t1

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