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revision 1.178 by utke, Tue Nov 18 22:11:07 2008 UTC revision 1.187 by jmc, Wed Apr 15 22:21:03 2009 UTC
# Line 611  Usage: "$0" [OPTIONS] Line 611  Usage: "$0" [OPTIONS]
611            set to PATH. i.e. Include files from \$PATH/include, link to libraries            set to PATH. i.e. Include files from \$PATH/include, link to libraries
612            from \$PATH/lib and use binaries from \$PATH/bin.            from \$PATH/lib and use binaries from \$PATH/bin.
613    
614        -omp | --omp
615              Activate OpenMP code + use Compiler option OMPFLAG
616        -omp=OMPFLAG | --omp=OMPFLAG
617              Activate OpenMP code + use Compiler option OMPFLAG
618    
619      -es | --es | -embed-source | --embed-source      -es | --es | -embed-source | --embed-source
620            Embed a tarball containing the full source code            Embed a tarball containing the full source code
621            (including the Makefile, etc.) used to build the            (including the Makefile, etc.) used to build the
# Line 1046  INCLUDES="-I. $INCLUDES" Line 1051  INCLUDES="-I. $INCLUDES"
1051  FFLAGS=  FFLAGS=
1052  FOPTIM=  FOPTIM=
1053  FEXTRAFLAGS=  FEXTRAFLAGS=
1054    USE_EXTENDED_SRC=
1055    EXTENDED_SRC_FLAG=
1056  CFLAGS=  CFLAGS=
1057  KFLAGS1=  KFLAGS1=
1058  KFLAGS2=  KFLAGS2=
# Line 1056  NOOPTFILES= Line 1063  NOOPTFILES=
1063  NOOPTFLAGS=  NOOPTFLAGS=
1064  MPI=  MPI=
1065  MPIPATH=  MPIPATH=
1066    OMP=
1067    OMPFLAG=
1068  TS=  TS=
1069  PAPIS=  PAPIS=
1070  PCLS=  PCLS=
# Line 1123  TAMC_EXTRA= Line 1132  TAMC_EXTRA=
1132    
1133  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1134  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1135  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"
1136    
1137  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1138  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
# Line 1324  for ac_option in "$@" ; do Line 1333  for ac_option in "$@" ; do
1333              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1334              MPI=true ;;              MPI=true ;;
1335                    
1336  #       -jam | --jam)          -omp | --omp)
1337  #           JAM=1 ;;              OMP=true ;;
1338  #       -nojam | --nojam)          -omp=* | --omp=*)
1339  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1340                OMP=true ;;
1341                    
1342          -ds | --ds)          -ds | --ds)
1343              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 1402  if test ! -d ${ROOTDIR} ; then Line 1412  if test ! -d ${ROOTDIR} ; then
1412  fi  fi
1413    
1414  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1415  if test -f "${ROOTDIR}/doc/tag-index" ; then  version_file="${ROOTDIR}/doc/tag-index"
1416      THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`  if test -f $version_file ; then
1417        THISVER=`grep '^checkpoint' $version_file | head -1`
1418    #-  remove ./BUILD_INFO.h file if older than version_file
1419        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1420            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1421            rm -f ./BUILD_INFO.h
1422        fi
1423  fi  fi
1424    
1425  if test "x$MAKEFILE" = x ; then  if test "x$MAKEFILE" = x ; then
# Line 1559  if test ! "x$MPI" = x ; then Line 1575  if test ! "x$MPI" = x ; then
1575        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1576        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1577  fi  fi
1578    if test ! "x$OMP" = x ; then
1579          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1580          FFLAGS="$FFLAGS $OMPFLAG"
1581          F90FLAGS="$F90FLAGS $OMPFLAG"
1582          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1583    fi
1584    
1585  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1586        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
# Line 1640  if test ! "x$GSL" = x ; then Line 1662  if test ! "x$GSL" = x ; then
1662        INCLUDES="$INCLUDES $GSLINC"        INCLUDES="$INCLUDES $GSLINC"
1663        LIBS="$LIBS $GSLLIB"        LIBS="$LIBS $GSLLIB"
1664  fi  fi
1665    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1666    if test ! "x$USE_EXTENDED_SRC" = x ; then
1667          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1668          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1669    fi
1670    
1671  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1672  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
# Line 1762  fi Line 1789  fi
1789    
1790    
1791  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1792  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1793    MPI_LNKF=
1794  for d in $MODS ; do  for d in $MODS ; do
1795      if test ! -d $d ; then      if test ! -d $d ; then
1796          echo          echo
1797          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1798          exit 1          exit 1
1799      else      else
1800          printf " $d"          printf "$d "
1801          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1802          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1803            #-------------------------------------------------------
1804            # Put special links so that MPI specific files are used
1805            MPI_FILES=`(cd $d ; find . -name "*_mpi" -print)`
1806            for i in $MPI_FILES ; do
1807              ii=`echo $i | sed 's:^\./::'`
1808              name=`echo $ii | sed 's:_mpi::' `
1809              if test "x$MPI" = x ; then
1810              # NO: We undo an _mpi symbolically linked file
1811                if test -L $name ; then
1812                  cmp $name "$d/$ii" > /dev/null 2>&1
1813                  RETVAL=$?
1814                  if test "x$RETVAL" = x0 ; then
1815                    printf "Un-linking $name ; "
1816                    rm -f $name
1817                  fi
1818                fi
1819              else
1820              # YES: We symbolically link this file (with conditions if already there)
1821                if test -L $name ; then
1822                  cmp $d/$ii $name > /dev/null 2>&1
1823                  RETVAL=$?
1824                  yy=0 ;
1825                  for xx in $MPI_LNKF ; do if test $xx = $name ; then yy=1 ; fi ; done
1826                  if test "x$RETVAL" != x0 -a $yy = 0 ; then
1827                  # remove sym-link if different and has not just been linked
1828                    printf "Un-link + "
1829                    rm -f $name
1830                  fi
1831                  if test "x$RETVAL" = x0 ; then
1832                  # if identical, keep sym-link and keep record of it
1833                    MPI_LNKF="$MPI_LNKF $name"
1834                  fi
1835                fi
1836                if ! test -f $name ; then
1837                  # make sym-link and keep record of it
1838                    printf "Linking $ii to $name ; "
1839                    ln -sf $d/$ii $name
1840                    MPI_LNKF="$MPI_LNKF $name"
1841                fi
1842              fi
1843            done
1844            #-------------------------------------------------------
1845      fi      fi
1846  done  done
1847  echo  echo
1848    #echo "MPI_LNKF='$MPI_LNKF'"
1849    
1850  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1851      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
# Line 2515  else Line 2586  else
2586      echo "EMBEDDED_FILES = " >>$MAKEFILE      echo "EMBEDDED_FILES = " >>$MAKEFILE
2587  fi  fi
2588    
 #  Note: figure out some way to add Hyades JAM libraries here  
2589  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2590  # Unix ln (link)  # Unix ln (link)
2591  LN = ${LN}  LN = ${LN}
# Line 2714  EOF Line 2784  EOF
2784  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2785  #===  for TAMC/TAF  ======================  #===  for TAMC/TAF  ======================
2786    
2787  if test "x$OPENAD" == x ; then  if test "x$OPENAD" = x ; then
2788    
2789  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2790    
# Line 2999  ad_input_code_sf.w2f.f$FS90: ad_input_co Line 3069  ad_input_code_sf.w2f.f$FS90: ad_input_co
3069    
3070  # canonicalizer  # canonicalizer
3071  ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py  ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3072          ./preProcess.py -H \$< -o \$@          ./preProcess.py -H -S \$< -o \$@
3073    
3074  # F -> WHIRL  # F -> WHIRL
3075  # note that the canonicalized version cuts off at col 72  # note that the canonicalized version cuts off at col 72
# Line 3016  ad_input_code_sf.w2f.pre.xaif : ad_input Line 3086  ad_input_code_sf.w2f.pre.xaif : ad_input
3086          ./whirl2xaif -s -n --debug 1 -o \$@ \$<          ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3087    
3088  # XAIF -> XAIF'  # XAIF -> XAIF'
3089  ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd openad_adm  ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3090          ./openad_adm -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r          ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3091    
3092  # XAIF' -> WHIRL'  # XAIF' -> WHIRL'
3093  ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl  ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
# Line 3031  ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS Line 3101  ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS
3101  ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash  ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3102          ../OAD_support/insertTemplateDir.bash \$< \$@          ../OAD_support/insertTemplateDir.bash \$< \$@
3103    
3104    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3105  # postprocess F'  # postprocess F'
3106  ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 multi-pp.pl ../OAD_support/ad_inline.f \$(wildcard ../OAD_support/ad_template.*.f)  ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 multi-pp.pl \$(PPEXTRAS:.F=.f)
3107          perl multi-pp.pl -inline=../OAD_support/ad_inline.f \$<          perl multi-pp.pl -inline=../OAD_support/ad_inline.f \$<
3108          # the postprocessor still gets the name wrong          # the postprocessor still gets the name wrong
3109          cat \$<.pp | sed 's/RETURN//' > \$@          cat \$<.pp | sed 's/RETURN//' > \$@
# Line 3071  preProcess.py: Line 3142  preProcess.py:
3142  whirl2f whirl2f_be:  whirl2f whirl2f_be:
3143          \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .          \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3144    
3145  openad_adm:  oadDriver:
3146          \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/test/t \$@          \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3147    
3148  # ============ end OpenAD specific section ==============  # ============ end OpenAD specific section ==============
3149    

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