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revision 1.25 by edhill, Thu Oct 30 13:22:42 2003 UTC revision 1.186 by jmc, Sun Mar 29 19:09:24 2009 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24      if test "x${RETVAL}" = x0 ; then  }
25          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"  
26          exit 99  # Search for particular CPP #cmds associated with MPI
27      fi  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1  test_for_mpi_in_cpp_eeoptions() {
29        cpp_options=$1
30        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38    }
39    
40    # Search for particular string in a file. Return 1 if detected, 0 if not
41    # usage: test_for_string_in_file file string
42    test_for_string_in_file() {
43        file=$1
44        strng=$2
45        grep -i "$strng" $file > /dev/null 2>&1
46      RETVAL=$?      RETVAL=$?
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
49            grep -i "$strng" $file
50          exit 99          exit 99
51      fi      fi
52      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
53  }  }
54    
55  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
# Line 62  expand_pkg_groups() { Line 75  expand_pkg_groups() {
75          done          done
76          PACKAGES=$new_packages          PACKAGES=$new_packages
77          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
78            return $matched
79      else      else
80          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
81      fi      fi
82  }  }
83    
84    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
85    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
86    check_for_broken_Ff()  {
87        #  Do we have defaults for $FS and/or $FS90 ?
88        tfs=f
89        tfs9=f90
90        if test "x$FS" != x ; then
91            tfs="$FS"
92        fi
93        if test "x$FS90" != x ; then
94            tfs9="$FS90"
95        fi
96    
97        #  First check the ability to create a *.F/.f pair.
98        cat <<EOF >> genmake_hello.F
99          program hello
100          write(*,*) 'hi'
101          stop
102          end
103    EOF
104        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
105        RETVAL=$?
106        if test "x$RETVAL" != x0 ; then
107            if test "x$FS" = x ; then
108                FS='for'
109                FS90='fr9'
110                check_for_broken_Ff
111            else
112                cat <<EOF 2>&1
113    ERROR: Your file system cannot distinguish between *.F and *.f files
114      (fails the "cp" test) and this program cannot find a suitable
115      replacement extension.  Please try a different build environment or
116      contact the <MITgcm-support@mitgcm.org> list for help.
117    
118    EOF
119                exit -1
120            fi
121            return
122        fi
123        rm -f genmake_hello.*
124    
125        #  Check the ability of ${MAKE} and ${LN} to use the current set
126        #  of extensions.
127        cat <<EOF >> genmake_hello.F
128          program hello
129          write(*,*) 'hi'
130          stop
131          end
132    EOF
133        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
134        cat <<EOF >> $MAKEFILE
135    .SUFFIXES:
136    .SUFFIXES: .$tfs .F
137    .F.$tfs:
138            $LN \$< \$@
139    EOF
140        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
141        RETVAL=$?
142        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
143            if test "x$FS" = x ; then
144                FS='for'
145                FS90='fr9'
146                check_for_broken_Ff
147            else
148                cat <<EOF 2>&1
149    ERROR: Your file system cannot distinguish between *.F and *.f files
150      (fails the "make/ln" test) and this program cannot find a suitable
151      replacement extension.  Please try a different build environment or
152      contact the <MITgcm-support@mitgcm.org> list for help.
153    
154    EOF
155                exit -1
156                return
157            fi
158        fi
159        rm -f genmake_hello.* $MAKEFILE
160        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
161    
162        #  If we make it here, use the extensions
163        FS=$tfs
164        FS90=$tfs9
165        return
166    }
167    
168    
169    look_for_makedepend()  {
170    
171        #  The "original" makedepend is part of the Imake system that is
172        #  most often distributed with XFree86 or with an XFree86 source
173        #  package.  As a result, many machines (eg. generic Linux) do not
174        #  have a system-default "makedepend" available.  For those
175        #  systems, we have two fall-back options:
176        #
177        #    1) a makedepend implementation shipped with the cyrus-imapd
178        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
179        #
180        #    2) a known-buggy xmakedpend shell script
181        #
182        #  So the choices are, in order:
183        #
184        #    1) use the user-specified program
185        #    2) use a system-wide default
186        #    3) locally build and use the cyrus implementation
187        #    4) fall back to the buggy local xmakedpend script
188        #
189        if test "x${MAKEDEPEND}" = x ; then
190            which makedepend > /dev/null 2>&1
191            RV0=$?
192            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
193            #  echo 'MAKEFILE="'$MAKEFILE'"'
194            cat <<EOF >> $MAKEFILE
195    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
196    #
197    #   Some "makedepend" implementations will die if they cannot
198    #   find a Makefile -- so this file is here to gives them an
199    #   empty one to find and parse.
200    EOF
201            cat <<EOF >> genmake_tc.f
202          program test
203          write(*,*) 'test'
204          stop
205          end
206    EOF
207            makedepend genmake_tc.f > /dev/null 2>&1
208            RV1=$?
209            test -f $MAKEFILE  &&  rm -f $MAKEFILE
210            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
211            if test "x${RV0}${RV1}" = x00 ; then
212                MAKEDEPEND=makedepend
213            else
214                echo "    a system-default makedepend was not found."
215                
216                #  Try to build the cyrus implementation
217                build_cyrus_makedepend
218                RETVAL=$?
219                if test "x$RETVAL" != x0 ; then
220                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
221                fi
222                rm -f ./genmake_cy_md
223            fi
224        else
225            #  echo "MAKEDEPEND=${MAKEDEPEND}"
226            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
227            RETVAL=$?
228            if test x"$RETVAL" = x0 ; then
229                build_cyrus_makedepend
230            fi
231        fi
232    }
233    
234    
235    build_cyrus_makedepend()  {
236        rm -f ./genmake_cy_md
237        (
238            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
239                &&  ./configure > /dev/null 2>&1  \
240                &&  make > /dev/null 2>&1
241            if test -x ./makedepend.exe ; then
242                $LN ./makedepend.exe ./makedepend
243            fi
244            ./makedepend ifparser.c > /dev/null 2>&1  \
245                &&  echo "true"
246        ) > ./genmake_cy_md
247        grep true ./genmake_cy_md > /dev/null 2>&1
248        RETVAL=$?
249        rm -f ./genmake_cy_md
250        if test "x$RETVAL" = x0 ; then
251            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
252            return 0
253        else
254            echo "WARNING: unable to build cyrus-imapd-makedepend"
255            return 1
256        fi
257    }
258    
259    
260    build_embed_encode()
261    {
262        printf "  building the embed-encode utility...  "
263        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265                echo
266                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267                echo
268                EMBED_SRC=f
269                return 1
270            fi
271            clist="cc gcc c89 $CC"
272            for ic in $clist ; do
273                comm="$ic -o encode_files encode_files.c"
274                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275                RETVAL=$?
276                if test "x$RETVAL" = x0 ; then
277                    echo "OK"
278                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279                    return 0
280                fi
281            done
282            echo
283            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
284            echo "      so it has been disabled"
285            echo
286            EMBED_SRC=f
287            return 1
288        fi
289        echo "OK"
290        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291    }
292    
293    
294  # Guess possible config options for this host  # Guess possible config options for this host
295  find_possible_configs()  {  find_possible_configs()  {
296    
297      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
298      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
299      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
300      PLATFORM=`echo $tmp3 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
301        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
302        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
303        PLATFORM=$tmp3
304        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
305      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
306      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
307            
308      echo "test" > test      echo "test" > test
309      ln -s ./test link      ln -s ./test link
# Line 104  find_possible_configs()  { Line 321  find_possible_configs()  {
321          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
322      fi      fi
323    
324      # look for possible fortran compilers      look_for_makedepend
325      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"  
326        #================================================================
327        #  look for possible C compilers
328        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329        p_CC=
330        for c in $tmp ; do
331            rm -f ./genmake_hello.c  ./genmake_hello
332            cat >> genmake_hello.c << EOF
333    #include <stdio.h>
334    int main(int argc, char **argv) {
335      printf("Hello!\n");
336      return 0;
337    }
338    EOF
339            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
340            RETVAL=$?
341            if test "x${RETVAL}" = x0 ; then
342                p_CC="$p_CC $c"
343            fi
344        done
345        rm -f ./genmake_hello.c ./genmake_hello
346        if test "x${p_CC}" = x ; then
347            cat 1>&2 <<EOF
348    
349    Error: No C compilers were found in your path.  Please specify one using:
350    
351        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
352        2) the CC or MITGCM_CC environment variables.
353    
354    EOF
355            exit 1
356        else
357            echo "  The possible C compilers found in your path are:"
358            echo "   "$p_CC
359            if test "x$CC" = x ; then
360                CC=`echo $p_CC | $AWK '{print $1}'`
361                echo "  Setting C compiler to: "$CC
362            fi
363        fi
364    
365        #================================================================
366        #  look for possible FORTRAN compilers
367        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 130  Error: No Fortran compilers were found i Line 389  Error: No Fortran compilers were found i
389    
390      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
391      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
392      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
393    
394  EOF  EOF
395          exit 1          exit 1
396      else      else
397          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
398          echo "   "$p_FC          echo "   "$p_FC
         if test "x$FC" = x ; then  
             FC=`echo $p_FC | $AWK '{print $1}'`  
         fi  
399      fi      fi
400    
401      for i in $p_FC ; do      #  Use the first of the compilers found in the current PATH
402          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i      #  that has a correctly-named optfile
403          if test -r $p_OF ; then      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
404              OPTFILE=$p_OF          for i in $p_FC ; do
405              echo "  The options file:  $p_OF"              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
406              echo "    appears to match so we'll use it."              if test -r $OPTFILE ; then
407              break                  echo "  Setting OPTFILE to: "$OPTFILE
408          fi                  break
409      done              fi
410            done
411        fi
412    
413        if test "x$OPTFILE" = x ; then
414            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
415            if test ! -r $OPTFILE ; then
416                 echo "  I looked for the file "$OPTFILE" but did not find it"
417            fi
418        fi
419    #    echo "  The options file:  $p_OF"
420    #    echo "    appears to match so we'll use it."
421    #   for i in $p_FC ; do
422    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
423    #if test -r $p_OF ; then
424    #    OPTFILE=$p_OF
425    #    echo "  The options file:  $p_OF"
426    #    echo "    appears to match so we'll use it."
427    #    break
428    #fi
429    #   done
430      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
431          cat 1>&2 <<EOF          cat 1>&2 <<EOF
432    
# Line 206  get_pdepend_list()  { Line 482  get_pdepend_list()  {
482      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
483          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
484          > ./.pd_tmp          > ./.pd_tmp
485      source ./.pd_tmp      . ./.pd_tmp
486      rm -f ./.pd_tmp      rm -f ./.pd_tmp
487    
488      echo -n "PNAME = "${}      printf "PNAME = "${}
489  }  }
490    
491    
492  #  Explain usage  #  Explain usage
493  usage()  {  usage()  {
494      echo  cat <<EOF
495      echo "Usage: "$0" [OPTIONS]"  
496      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
497      echo    where [OPTIONS] can be:
498      echo "    -help | --help | -h | --h"  
499      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
500      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
501      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
502      echo "    -pdepend NAME | --pdepend NAME"      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
503      echo "      -pdepend=NAME | --pdepend=NAME"        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
504      echo "    -pdefault NAME | --pdefault NAME"            Use "NAME" as the adoptfile.  By default, the file at
505      echo "      -pdefault=NAME | --pdefault=NAME"            "tools/adjoint_options/adjoint_default" will be used.
506      echo "    -make NAME | -m NAME"  
507      echo "      --make=NAME | -m=NAME"      -nooptfile | --nooptfile
508      echo "    -makefile NAME | -mf NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
509      echo "      --makefile=NAME | -mf=NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
510      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"            Use "NAME" as the optfile.  By default, an attempt will be
511      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            made to find an appropriate "standard" optfile in the
512      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"            tools/build_options/ directory.
513      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"  
514      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"      -pdepend NAME | --pdepend NAME
515      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"        -pdepend=NAME | --pdepend=NAME
516      echo "    -disable NAME | --disable NAME"            Get package dependency information from "NAME".
517      echo "      -disable=NAME | --disable=NAME"  
518      echo "    -enable NAME | --enable NAME"      -pdefault NAME | --pdefault NAME
519      echo "      -enable=NAME | --enable=NAME"        -pdefault=NAME | --pdefault=NAME
520      echo "    -standarddirs NAME | --standarddirs NAME"            Get the default package list from "NAME".
521      echo "      -standarddirs=NAME | --standarddirs=NAME"  
522      echo "    -noopt NAME | --noopt NAME"      -make NAME | -m NAME
523      echo "      -noopt=NAME | --noopt=NAME"        --make=NAME | -m=NAME
524  #    echo "    -cpp NAME | --cpp NAME"            Use "NAME" for the MAKE program. The default is "make" but
525  #    echo "      -cpp=NAME | --cpp=NAME"            many platforms, "gmake" is the preferred choice.
526      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"  
527      echo "      -fc=NAME | --fc=NAME"      -makefile NAME | -mf NAME
528      echo "    -[no]ieee | --[no]ieee"        --makefile=NAME | -mf=NAME
529      echo "    -[no]mpi | --[no]mpi"            Call the makefile "NAME".  The default is "Makefile".
530      echo "    -[no]jam | --[no]jam"  
531      echo      -makedepend NAME | -md NAME
532      echo "  and NAME is a string such as:"        --makedepend=NAME | -md=NAME
533      echo            Use "NAME" for the MAKEDEPEND program.
534      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"  
535      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
536      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
537      echo            Specify the location of the MITgcm ROOTDIR as "NAME".
538      echo "  which, depending upon your shell, may need to be single-quoted"            By default, genamke will try to find the location by
539      echo "  if it contains spaces, dashes, or other special characters."            looking in parent directories (up to the 5th parent).
540    
541        -mods NAME | --mods NAME | -mo NAME | --mo NAME
542          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
543              Here, "NAME" specifies a list of directories that are
544              used for additional source code.  Files found in the
545              "mods list" are given preference over files of the same
546              name found elsewhere.
547    
548        -disable NAME | --disable NAME
549          -disable=NAME | --disable=NAME
550              Here "NAME" specifies a list of packages that we don't
551              want to use.  If this violates package dependencies,
552              genamke will exit with an error message.
553    
554        -enable NAME | --enable NAME
555          -enable=NAME | --enable=NAME
556              Here "NAME" specifies a list of packages that we wish
557              to specifically enable.  If this violates package
558              dependencies, genamke will exit with an error message.
559    
560        -standarddirs NAME | --standarddirs NAME
561          -standarddirs=NAME | --standarddirs=NAME
562              Here, "NAME" specifies a list of directories to be
563              used as the "standard" code.
564    
565        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
566          -fc=NAME | --fc=NAME
567              Use "NAME" as the fortran compiler.  By default, genmake
568              will search for a working compiler by trying a list of
569              "usual suspects" such as g77, f77, etc.
570    
571        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
572              Use "NAME" as the C compiler.  By default, genmake
573              will search for a working compiler by trying a list of
574              "usual suspects" such as gcc, c89, cc, etc.
575    
576        -[no]ieee | --[no]ieee
577              Do or don't use IEEE numerics.  Note that this option
578              *only* works if it is supported by the OPTFILE that
579              is being used.
580    
581        -ignoretime | -ignore_time | --ignoretime | --ignore_time
582              Ignore all the "wall clock" routines entirely.  This will
583              not in any way hurt the model results -- it simply means
584              that the code that checks how long the model spends in
585              various routines will give junk values.
586    
587        -ts | --ts
588              Produce timing information per timestep
589        -papis | --papis
590              Produce summary MFlop/s (and IPC) with PAPI per timestep
591        -pcls | --pcls
592              Produce summary MFlop/s etc. with PCL per timestep
593        -foolad | --foolad
594              Fool the AD code generator
595        -papi | --papi
596              Performance analysis with PAPI
597        -pcl | --pcl
598              Performance analysis with PCL
599        -hpmt | --hpmt
600              Performance analysis with the HPM Toolkit
601    
602        -gsl | --gsl
603              Use GSL to control floating point rounding and precision
604        -devel | --devel
605              Add additional warning and debugging flags for development
606    
607        -mpi | --mpi
608              Include MPI header files and link to MPI libraries
609        -mpi=PATH | --mpi=PATH
610              Include MPI header files and link to MPI libraries using MPI_ROOT
611              set to PATH. i.e. Include files from \$PATH/include, link to libraries
612              from \$PATH/lib and use binaries from \$PATH/bin.
613    
614        -es | --es | -embed-source | --embed-source
615              Embed a tarball containing the full source code
616              (including the Makefile, etc.) used to build the
617              executable [off by default]
618    
619        -bash NAME
620              Explicitly specify the Bourne or BASH shell to use
621    
622      While it is most often a single word, the "NAME" variables specified
623      above can in many cases be a space-delimited string such as:
624    
625        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
626        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
627        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
628    
629      which, depending upon your shell, may need to be single-quoted.
630    
631      For more detailed genmake documentation, please see:
632    
633        http://mitgcm.org/devel_HOWTO/
634    
635    EOF
636    
637      exit 1      exit 1
638  }  }
639    
640  #eh3 # This is the generic configuration.  #  Build a CPP macro to automate calling C routines from FORTRAN
641  #eh3 set LN         = ( 'ln -s' )  get_fortran_c_namemangling()  {
642  #eh3 set CPP        = ( '/lib/cpp -P' )  
643  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
644  #eh3 set KPP        = (  )      if test ! "x$FC_NAMEMANGLE" = x ; then
645  #eh3 set FC         = ( 'f77' )          return 0
646  #eh3 set LINK       = $FC      fi
647  #eh3 set MAKEDEPEND = ( 'makedepend' )  
648  #eh3 set INCLUDES   = ( -I. )      default_nm="#define FC_NAMEMANGLE(X) X ## _"
649  #eh3 set FFLAGS     = (  )      
650  #eh3 set FOPTIM     = (  )      cat > genmake_test.c <<EOF
651  #eh3 set CFLAGS     = (  )  void tcall( char * string ) { tsub( string ); }
652  #eh3 set KFLAGS1    = (  )  EOF
653  #eh3 set KFLAGS2    = (  )      $MAKE genmake_test.o >> genmake_warnings 2>&1
654  #eh3 set LIBS       = (  )      RETVAL=$?
655  #eh3 set KPPFILES   = (  )      if test "x$RETVAL" != x0 ; then
656  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )          FC_NAMEMANGLE=$default_nm
657  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )          cat <<EOF>> genmake_errors
658    
659    WARNING: C test compile fails
660    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
661    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
662    EOF
663            return 1
664        fi
665        c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
666        RETVAL=$?
667        if test "x$RETVAL" != x0 ; then
668            FC_NAMEMANGLE=$default_nm
669            cat <<EOF>> genmake_warnings
670    
671    WARNING: The "nm" command failed.
672    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
673    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
674    EOF
675            return 1
676        fi
677        cat > genmake_tcomp.$FS <<EOF
678          subroutine tcall( string )
679          character*(*) string
680          call tsub( string )
681          end
682    EOF
683        $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
684        RETVAL=$?
685        if test "x$RETVAL" != x0 ; then
686            FC_NAMEMANGLE=$default_nm
687            cat <<EOF>> genmake_warnings
688    
689    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
690    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
691    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
692    EOF
693            return 1
694        fi
695        f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
696        RETVAL=$?
697        if test "x$RETVAL" != x0 ; then
698            FC_NAMEMANGLE=$default_nm
699            cat <<EOF>> genmake_warnings
700    
701    WARNING: The "nm" command failed.
702    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
703    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
704    EOF
705            return 1
706        fi
707    
708        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
709        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
710        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
711        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
712    
713        nmangle="X"
714        if test "x$c_a" != "x$f_a" ; then
715            comm="echo x$f_a | sed -e 's|x$c_a||'"
716            a=`eval $comm`
717            nmangle="$a ## $nmangle"
718        fi
719        if test "x$c_b" != "x$f_b" ; then
720            comm="echo x$f_b | sed -e 's|x$c_b||'"
721            b=`eval $comm`
722            nmangle="$nmangle ## $b"
723        fi
724    
725        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
726    
727        #  cleanup the testing files
728        rm -f genmake_tcomp.* genmake_test.*
729    }
730    
731    
732    check_HAVE_CLOC()  {
733        get_fortran_c_namemangling
734        cat <<EOF > genmake_tc_1.c
735    $FC_NAMEMANGLE
736    #include <stdio.h>
737    #include <stdlib.h>
738    #include <unistd.h>
739    #include <assert.h>
740    #include <sys/time.h>
741    void FC_NAMEMANGLE(cloc) ( double *curtim )
742    {
743     struct timeval tv1;
744     gettimeofday(&tv1 , (void *)NULL );
745     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
746     *curtim = *curtim/1.E6;
747    }
748    EOF
749        COMM="$CC $CFLAGS -c genmake_tc_1.c"
750        echo $COMM >> genmake_warnings
751        $COMM >> genmake_warnings 2>&1
752        RET_C=$?
753        cat <<EOF > genmake_tc_2.$FS
754          program hello
755          REAL*8 wtime
756          external cloc
757          call cloc(wtime)
758          print *," HELLO WORLD", wtime
759          end
760    EOF
761        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
762        echo $COMM >> genmake_warnings
763        $COMM >> genmake_warnings 2>&1
764        RET_F=$?
765        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
766        RETVAL=$?
767        if test "x$RETVAL" = x0 ; then
768            HAVE_CLOC=t
769            DEFINES="$DEFINES -DHAVE_CLOC"
770        fi
771        rm -f genmake_tc*
772    }
773    
774    
775    check_HAVE_SIGREG()  {
776        if test ! "x$HAVE_SIGREG" = x ; then
777            return
778        fi
779        get_fortran_c_namemangling
780        cat <<EOF > genmake_tc_1.c
781    $FC_NAMEMANGLE
782    #include <stdlib.h>
783    #include <stdio.h>
784    #include <signal.h>
785    #include <errno.h>
786    #include <ucontext.h>
787    
788    int * ip;
789    
790    static void killhandler(
791        unsigned int sn, siginfo_t  si, struct ucontext *sc )
792    {
793        *ip = *ip + 1;
794        return;
795    }
796    
797    void FC_NAMEMANGLE(sigreg) (int * aip)
798    {
799        struct sigaction s;
800        ip = aip;
801        s.sa_flags = SA_SIGINFO;
802        s.sa_sigaction = (void *)killhandler;
803        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
804            printf("Sigaction returned error = %d\n", errno);
805            exit(0);
806        }
807        return;
808    }
809    EOF
810        COMM="$CC $CFLAGS -c genmake_tc_1.c"
811        echo $COMM >> genmake_warnings
812        $COMM >> genmake_warnings 2>&1
813        RET_C=$?
814        cat <<EOF > genmake_tc_2.$FS
815          program hello
816          integer anint
817          common /iv/ anint
818          external sigreg
819          call sigreg(anint)
820          end
821    EOF
822        echo >> genmake_warnings
823        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
824        cat genmake_tc_2.$FS >> genmake_warnings
825        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
826        echo $COMM >> genmake_warnings
827        $COMM >> genmake_warnings 2>&1
828        RETVAL=$?
829        if test "x$RETVAL" = x0 ; then
830            HAVE_SIGREG=t
831            DEFINES="$DEFINES -DHAVE_SIGREG"
832        fi
833        rm -f genmake_tc*
834    }
835    
836    
837    check_HAVE_SETRLSTK()  {
838        if test "x$HAVE_SETRLSTK" = xt ; then
839            DEFINES="$DEFINES -DHAVE_SETRLSTK"
840            return
841        fi  
842        if test ! "x$HAVE_SETRLSTK" = x ; then
843            return
844        fi
845        get_fortran_c_namemangling
846        cat <<EOF > genmake_tc_1.c
847    $FC_NAMEMANGLE
848    #include <sys/time.h>
849    #include <sys/resource.h>
850    #include <unistd.h>
851    void FC_NAMEMANGLE(setrlstk) ()
852    {
853        struct rlimit rls;
854        rls.rlim_cur = RLIM_INFINITY;
855        rls.rlim_max = RLIM_INFINITY;
856        setrlimit(RLIMIT_STACK, &rls);
857        return;
858    }
859    EOF
860        COMM="$CC $CFLAGS -c genmake_tc_1.c"
861        echo $COMM >> genmake_warnings
862        $COMM >> genmake_warnings 2>&1
863        RET_C=$?
864        cat <<EOF > genmake_tc_2.$FS
865          program hello
866          external setrlstk
867          call setrlstk()
868          end
869    EOF
870        echo >> genmake_warnings
871        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
872        cat genmake_tc_2.$FS >> genmake_warnings
873        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
874        echo $COMM >> genmake_warnings
875        $COMM >> genmake_warnings 2>&1
876        RETVAL=$?
877        if test "x$RETVAL" = x0 ; then
878            HAVE_SETRLSTK=t
879            DEFINES="$DEFINES -DHAVE_SETRLSTK"
880        fi
881        rm -f genmake_tc*
882    }
883    
884    
885    check_HAVE_STAT()  {
886        get_fortran_c_namemangling
887        cat <<EOF > genmake_tc_1.c
888    $FC_NAMEMANGLE
889    #include <stdio.h>
890    #include <stdlib.h>
891    #include <unistd.h>
892    #include <sys/stat.h>
893    #include <sys/types.h>
894    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
895    {
896        char name[512];
897        struct stat astat;
898    
899        name[0] = 'a'; name[1] = '\0';
900        if (! stat(name, &astat))
901            *nbyte = (int)(astat.st_size);
902        else
903            *nbyte = -1;
904    }
905    EOF
906        COMM="$CC $CFLAGS -c genmake_tc_1.c"
907        echo $COMM >> genmake_warnings
908        $COMM >> genmake_tc.log 2>&1
909        RET_C=$?
910        cat <<EOF > genmake_tc_2.$FS
911          program hello
912          integer nbyte
913          call tfsize(nbyte)
914          print *," HELLO WORLD", nbyte
915          end
916    EOF
917        echo >> genmake_warnings
918        echo "running: check_HAVE_STAT()" >> genmake_warnings
919        cat genmake_tc_2.$FS >> genmake_warnings
920        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
921        echo $COMM >> genmake_warnings
922        $COMM >> genmake_tc.log 2>&1
923        RETVAL=$?
924        if test "x$RETVAL" = x0 ; then
925            HAVE_STAT=t
926            DEFINES="$DEFINES -DHAVE_STAT"
927        fi
928        rm -f genmake_tc*
929    }
930    
931    
932    check_netcdf_libs()  {
933        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
934            return
935        fi
936        echo >> genmake_warnings
937        echo "running: check_netcdf_libs()" >> genmake_warnings
938        cat <<EOF > genmake_tnc.F
939          program fgennc
940    #include "netcdf.inc"
941    EOF
942        if test ! "x$MPI" = x ; then
943            echo '#include "mpif.h"' >> genmake_tnc.F
944        fi
945        cat <<EOF >> genmake_tnc.F
946          integer iret, ncid, xid
947          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
948          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
949          iret = nf_def_dim(ncid, 'X', 11, xid)
950          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
951          iret = nf_close(ncid)
952          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
953          end
954    EOF
955        echo "===  genmake_tnc.F  ===" > genmake_tnc.log
956        cat genmake_tnc.F >> genmake_tnc.log
957        echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
958        RET_CPP=f
959        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
960        echo "$COMM" >> genmake_tnc.log
961        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
962        if test "x$RET_CPP" = xf ; then
963            echo "  WARNING: CPP failed to pre-process the netcdf test." \
964                >> genmake_tnc.log
965            echo "    Please check that \$INCLUDES is properly set." \
966                >> genmake_tnc.log
967        fi
968        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
969        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
970        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
971            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
972        RET_COMPILE=$?
973        cat genmake_tnc.log >> genmake_warnings
974    
975        #EH3  Remove test program execution for machines that either disallow
976        #EH3  execution or cannot support it (eg. cross-compilers)
977        #EH3
978        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
979        #EH3 RETVAL=$?
980        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
981    
982        if test "x$RET_COMPILE" = x0 ; then
983            HAVE_NETCDF=t
984        else
985            # try again with "-lnetcdf" added to the libs
986            echo "try again with added '-lnetcdf'" > genmake_tnc.log
987            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
988            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
989            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
990            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
991                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
992                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
993            RET_COMPILE=$?
994            cat genmake_tnc.log >> genmake_warnings
995            if test "x$RET_COMPILE" = x0 ; then
996                LIBS="$LIBS -lnetcdf"
997                HAVE_NETCDF=t
998            else
999            # try again with "-lnetcdff" added to the libs
1000                echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1001                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1002                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1003                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1004                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1005                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1006                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1007                RET_COMPILE=$?
1008                cat genmake_tnc.log >> genmake_warnings
1009                if test "x$RET_COMPILE" = x0 ; then
1010                    LIBS="$LIBS -lnetcdff -lnetcdf"
1011                    HAVE_NETCDF=t
1012                fi
1013            fi
1014        fi
1015        rm -f genmake_tnc*
1016    }
1017    
1018    
1019    
1020    ###############################################################################
1021    #   Sequential part of script starts here
1022    ###############################################################################
1023    
1024  #  Set defaults here  #  Set defaults here
1025  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 290  PLATFORM= Line 1028  PLATFORM=
1028  LN=  LN=
1029  S64=  S64=
1030  KPP=  KPP=
1031  FC=  #FC=
1032    #CC=gcc
1033    #CPP=
1034  LINK=  LINK=
1035  DEFINES="-DWORDLENGTH=4"  DEFINES=
1036  PACKAGES=  PACKAGES=
1037  ENABLE=  ENABLE=
1038  DISABLE=  DISABLE=
1039  MAKEFILE=  # MAKEFILE=
1040  MAKEDEPEND=  # MAKEDEPEND=
1041  PDEPEND=  PDEPEND=
1042  DUMPSTATE=t  DUMPSTATE=t
1043  PDEFAULT=  PDEFAULT=
1044  OPTFILE=  OPTFILE=
1045  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1046  FFLAGS=  FFLAGS=
1047  FOPTIM=  FOPTIM=
1048    FEXTRAFLAGS=
1049    USE_EXTENDED_SRC=
1050    EXTENDED_SRC_FLAG=
1051  CFLAGS=  CFLAGS=
1052  KFLAGS1=  KFLAGS1=
1053  KFLAGS2=  KFLAGS2=
1054    #LDADD=
1055  LIBS=  LIBS=
1056  KPPFILES=  KPPFILES=
1057  NOOPTFILES=  NOOPTFILES=
1058  NOOPTFLAGS=  NOOPTFLAGS=
1059    MPI=
1060    MPIPATH=
1061    TS=
1062    PAPIS=
1063    PCLS=
1064    FOOLAD=
1065    PAPI=
1066    PCL=
1067    HPMT=
1068    GSL=
1069    DEVEL=
1070    HAVE_TEST_L=
1071    
1072    # DEFINES checked by test compilation or command-line
1073    HAVE_SYSTEM=
1074    HAVE_FDATE=
1075    FC_NAMEMANGLE=
1076    HAVE_CLOC=
1077    # HAVE_SETRLSTK=
1078    HAVE_STAT=
1079    HAVE_NETCDF=
1080    HAVE_ETIME=
1081    IGNORE_TIME=
1082    
1083  MODS=  MODS=
1084  TOOLSDIR=  TOOLSDIR=
1085  SOURCEDIRS=  SOURCEDIRS=
1086  INCLUDEDIRS=  INCLUDEDIRS=
1087  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
1088    
1089    G2ARGS=
1090    BASH=
1091  PWD=`pwd`  PWD=`pwd`
1092  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1093  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1094  THISHOSTNAME=`hostname`  EMBED_SRC=
1095    THISHOST=`hostname`
1096  THISCWD=`pwd`  THISCWD=`pwd`
1097  THISDATE=`date`  THISDATE=`date`
1098    THISUSER=`echo $USER`
1099    THISVER=
1100  MACHINE=`uname -a`  MACHINE=`uname -a`
1101  EXECUTABLE=  EXECUTABLE=
1102  EXEHOOK=  EXEHOOK=
# Line 334  IEEE= Line 1106  IEEE=
1106  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1107      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1108  fi  fi
1109    FS=
1110    FS90=
1111    
1112  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1113  AD_OPTFILE=  AD_OPTFILE=
# Line 350  TAMC_EXTRA= Line 1124  TAMC_EXTRA=
1124    
1125    
1126  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1127  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1128  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"
1129    
1130  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1131  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1132  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1133  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1134  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1135    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
1136    
1137  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1138  gm_s7="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1139  gm_s8="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1140  gm_s9="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA"
1141    
1142  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8 $gm_s9"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
1143    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1144    
1145    cat <<EOF
1146    
1147    GENMAKE :
1148    
1149    A program for GENerating MAKEfiles for the MITgcm project.  For a
1150    quick list of options, use "genmake -h" or for more detail see:
1151    
1152      http://mitgcm.org/devel_HOWTO/
1153    
1154    EOF
1155    
 echo  
1156  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1157  gm_local="genmake_local"  gm_local="genmake_local"
1158  for i in . $MODS ; do  printf "  getting local config information:  "
1159      if test -r $i/$gm_local ; then  if test -f $gm_local ; then
         source $i/$gm_local  
         break  
     fi  
 done  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
1160      echo "using $gm_local"      echo "using $gm_local"
1161      source $gm_local      . $gm_local
1162      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
1163      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
1164  else  else
1165      echo "none found"      echo "none found"
1166  fi  fi
1167    
1168  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1169  #OPTIONS=  #OPTIONS=
1170  #n=0  #n=0
1171  #for i ; do  #for i ; do
# Line 398  fi Line 1177  fi
1177  #done  #done
1178  #parse_options  #parse_options
1179  ac_prev=  ac_prev=
1180  for ac_option ; do  for ac_option in "$@" ; do
1181    
1182        G2ARGS="$G2ARGS \"$ac_option\""
1183    
1184      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1185      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 421  for ac_option ; do Line 1202  for ac_option ; do
1202          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1203              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1204                    
1205          -adoptfile | --adoptfile | -ad | --ad)          -adoptfile | --adoptfile | -adof | --adof)
1206              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1207          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1208              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
# Line 441  for ac_option ; do Line 1222  for ac_option ; do
1222          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1223              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1224                    
1225            -bash | --bash)
1226                ac_prev=BASH ;;
1227            -bash=* | --bash=*)
1228                BASH=$ac_optarg ;;
1229            
1230            -makedepend | --makedepend | -md | --md)
1231                ac_prev=MAKEDEPEND ;;
1232            -makedepend=* | --makedepend=* | -md=* | --md=*)
1233                MAKEDEPEND=$ac_optarg ;;
1234            
1235          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
1236              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1237          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
1238              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1239                    
1240          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1241              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
1242          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
1243              PLATFORM=$ac_optarg ;;              echo
1244                usage
1245                ;;
1246                    
1247          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1248              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 476  for ac_option ; do Line 1269  for ac_option ; do
1269          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
1270              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
1271    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
1272  #           -cpp | --cpp)  #           -cpp | --cpp)
1273  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1274  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1275  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1276                        
1277            -cc | --cc)
1278                ac_prev=CC ;;
1279            -cc=* | --cc=*)
1280                CC=$ac_optarg ;;
1281            
1282          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1283              ac_prev=FC ;;              ac_prev=FC ;;
1284          -fc=* | --fc=*)          -fc=* | --fc=*)
1285              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1286                    
1287            -fs | --fs)
1288                ac_prev=FS ;;
1289            -fs=* | --fs=*)
1290                FS=$ac_optarg ;;
1291            
1292            -fs90 | --fs90)
1293                ac_prev=FS90 ;;
1294            -fs90=* | --fs90=*)
1295                FS90=$ac_optarg ;;
1296            
1297          -ieee | --ieee)          -ieee | --ieee)
1298              IEEE=true ;;              IEEE=true ;;
1299          -noieee | --noieee)          -noieee | --noieee)
1300              IEEE= ;;              IEEE= ;;
1301            
1302            -ts | --ts)
1303                TS=true ;;
1304            -papis | --papis)
1305                PAPIS=true ;;
1306            -pcls | --pcls)
1307                PCLS=true ;;
1308            -foolad | --foolad)
1309                FOOLAD=true ;;
1310            -papi | --papi)
1311                PAPI=true ;;
1312            -pcl | --pcl)
1313                PCL=true ;;
1314            -hpmt | --hpmt)
1315                HPMT=true ;;
1316    
1317            -gsl | --gsl)
1318                GSL=true ;;
1319    
1320            -devel | --devel)
1321                DEVEL=true ;;
1322    
1323          -mpi | --mpi)          -mpi | --mpi)
1324              MPI=true ;;              MPI=true ;;
1325          -nompi | --nompi)          -mpi=* | --mpi=*)
1326              MPI= ;;              MPIPATH=$ac_optarg
1327                MPI=true ;;
1328                    
1329          -jam | --jam)  #       -jam | --jam)
1330              JAM=1 ;;  #           JAM=1 ;;
1331          -nojam | --nojam)  #       -nojam | --nojam)
1332              JAM=0 ;;  #           JAM=0 ;;
1333                    
1334          -ds | --ds)          -ds | --ds)
1335              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 518  for ac_option ; do Line 1343  for ac_option ; do
1343              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1344          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1345              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1346            
1347            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1348                IGNORE_TIME="-DIGNORE_TIME" ;;
1349    
1350            -es | --es | -embed-source | --embed-source)
1351                EMBED_SRC=t ;;
1352    
1353          -*)          -*)
1354              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 533  for ac_option ; do Line 1364  for ac_option ; do
1364            
1365  done  done
1366    
1367    
1368  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1369      echo      echo
1370      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1371      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1372      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1373      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/devel_HOWTO/"
1374      echo      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1375      echo "  for directions on how to setup and use the new \"genmake2\" input"      echo "WARNING: ignore \"./.genmakerc\" and continue."
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
1376      echo      echo
1377  fi  fi
1378    
1379    #  Find the MITgcm ${ROOTDIR}
1380  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1381      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1382        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1383          ROOTDIR=".."          ROOTDIR=".."
1384      else      else
1385          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1386              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1387                  ROOTDIR=$d                  ROOTDIR=$d
1388                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1389                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1390                  break                  break
1391              fi              fi
# Line 570  if test ! -d ${ROOTDIR} ; then Line 1403  if test ! -d ${ROOTDIR} ; then
1403      exit 1      exit 1
1404  fi  fi
1405    
1406    #  Find the MITgcm ${THISVER}
1407    version_file="${ROOTDIR}/doc/tag-index"
1408    if test -f $version_file ; then
1409        THISVER=`grep '^checkpoint' $version_file | head -1`
1410    #-  remove ./BUILD_INFO.h file if older than version_file
1411        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1412            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1413            rm -f ./BUILD_INFO.h
1414        fi
1415    fi
1416    
1417    if test "x$MAKEFILE" = x ; then
1418        MAKEFILE="Makefile"
1419    fi
1420    
1421  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1422  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1423      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 583  fi Line 1431  fi
1431  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
1432      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1433          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
1434          source "$OPTFILE"          . "$OPTFILE"
1435          RETVAL=$?          RETVAL=$?
1436          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1437              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1438              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1439              exit 1              exit 1
1440          fi          fi
# Line 610  fi Line 1458  fi
1458  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
1459      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1460          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1461          source "$AD_OPTFILE"          . "$AD_OPTFILE"
1462          RETVAL=$?          RETVAL=$?
1463          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1464              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1465              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1466              exit 1              exit 1
1467          fi          fi
# Line 626  if test "x${AD_OPTFILE}" != xNONE ; then Line 1474  if test "x${AD_OPTFILE}" != xNONE ; then
1474      fi      fi
1475  fi  fi
1476    
1477  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  #====================================================================
1478  #  and abort!  #  Set default values if not set by the optfile
1479    #
1480    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1481    #  either set defaults or complain and abort!
1482    if test ! "x$BASH" = x ; then
1483        # add a trailing space so that it works within the Makefile syntax (see below)
1484        BASH="$BASH "
1485    fi
1486  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1487      cat <<EOF 1>&2      cat <<EOF 1>&2
1488    
# Line 636  Error: no Fortran compiler: please speci Line 1491  Error: no Fortran compiler: please speci
1491    2) the "-fc=XXX" command-line option    2) the "-fc=XXX" command-line option
1492    3) the "./genmake_local" file    3) the "./genmake_local" file
1493  EOF  EOF
1494      exit 1      exit 1
1495    fi
1496    if test "x$CC" = x ; then
1497        CC=cc
1498    #     cat <<EOF 1>&2
1499    # Error: no C compiler: please specify using one of the following:
1500    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1501    #   2) the "-cc=XXX" command-line option
1502    #   3) the "./genmake_local" file
1503    # EOF
1504    #     exit 1
1505    fi
1506    if test "x$LINK" = x ; then
1507        LINK=$FC
1508    fi
1509    if test "x$MAKE" = x ; then
1510        MAKE="make"
1511    fi
1512    if test "x$CPP" = x ; then
1513        CPP=cpp
1514    fi
1515    #EH3 === UGLY ===
1516    #  The following is an ugly little hack to check for $CPP in /lib/ and
1517    #  it should eventually be replaced with a more general function that
1518    #  searches a combo of the user's path and a list of "usual suspects"
1519    #  to find the correct location for binaries such as $CPP.
1520    for i in " " "/lib/" ; do
1521        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1522    done
1523    #EH3 === UGLY ===
1524    echo "#define A a" | $CPP > test_cpp 2>&1
1525    RETVAL=$?
1526    if test "x$RETVAL" != x0 ; then
1527        cat <<EOF 1>&2
1528    
1529    Error: C pre-processor "$CPP" failed the test case: please specify using:
1530    
1531      1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1532      2) the "./genmake_local" file
1533      3) with the CPP environment variable
1534    
1535    EOF
1536        exit 1
1537    else
1538        rm -f test_cpp
1539    fi
1540    look_for_makedepend
1541    if test "x$LN" = x ; then
1542        LN="ln -s"
1543    fi
1544    echo "test" > genmake_test_ln
1545    $LN genmake_test_ln genmake_tlink
1546    RETVAL=$?
1547    if test "x$RETVAL" != x0 ; then
1548        cat <<EOF 1>&2
1549    
1550    Error: The command "ln -s" failed -- please specify a working soft-link
1551      command in the optfile.
1552    
1553    EOF
1554        exit 1
1555    fi
1556    test -L genmake_tlink > /dev/null 2>&1
1557    RETVAL=$?
1558    if test "x$RETVAL" = x0 ; then
1559        HAVE_TEST_L=t
1560    fi
1561    rm -f genmake_test_ln genmake_tlink
1562    
1563    #  Check for broken *.F/*.f handling and fix if possible
1564    check_for_broken_Ff
1565    
1566    if test ! "x$MPI" = x ; then
1567          echo "  Turning on MPI cpp macros"
1568          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1569    fi
1570    
1571    if test ! "x$TS" = x ; then
1572          echo "  Turning on timing per timestep"
1573          if test ! "x$FOOLAD" = x ; then
1574                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1575          else
1576                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1577          fi
1578          PACKAGES="$PACKAGES showflops"
1579    fi
1580    if test ! "x$PAPIS" = x ; then
1581          echo "  Turning on PAPI flop summary per timestep"
1582          echo "  Please make sure PAPIINC, PAPILIB are defined"
1583          if test ! "x$FOOLAD" = x ; then
1584                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1585          else
1586                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1587          fi
1588          INCLUDES="$INCLUDES $PAPIINC"
1589          LIBS="$LIBS $PAPILIB"
1590          PACKAGES="$PACKAGES showflops"
1591    fi
1592    if test ! "x$PCLS" = x ; then
1593          echo "  Turning on PCL counter summary per timestep"
1594          echo "  Please make sure PCLINC, PCLLIB are defined"
1595          if test ! "x$FOOLAD" = x ; then
1596                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1597          else
1598                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1599          fi
1600          INCLUDES="$INCLUDES $PCLINC"
1601          LIBS="$LIBS $PCLLIB"
1602          PACKAGES="$PACKAGES showflops"
1603    fi
1604    if test ! "x$PAPI" = x ; then
1605          if test ! "x$PAPIS" = x ; then
1606              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1607              echo "  Sticking with PAPI flop summary per timestep!"
1608          else
1609              echo "  Turning on performance analysis with PAPI"
1610              echo "  Please make sure PAPIINC, PAPILIB are defined"
1611              DEFINES="$DEFINES -DUSE_PAPI"
1612              INCLUDES="$INCLUDES $PAPIINC"
1613              LIBS="$LIBS $PAPILIB"
1614          fi
1615    fi
1616    if test ! "x$PCL" = x ; then
1617          if test ! "x$PCLS" = x ; then
1618              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1619              echo "  Sticking with PCL flop summary per timestep!"
1620          else
1621              echo "  Turning on performance analysis with PCL"
1622              echo "  Please make sure PCLINC, PCLLIB are defined"
1623              DEFINES="$DEFINES -DUSE_PCL"
1624              INCLUDES="$INCLUDES $PCLINC"
1625              LIBS="$LIBS $PCLLIB"
1626          fi
1627    fi
1628    if test ! "x$HPMT" = x ; then
1629          if test ! "x$PAPI" = x ; then
1630              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1631              echo "  Sticking with PAPI!"
1632          else if test ! "x$PCL" = x ; then
1633              echo "  PCL and the HPM Toolkit cannot co-exist!"
1634              echo "  Sticking with PCL!"
1635          else
1636              echo "  Turning on performance analysis with the HPM Toolkit"
1637              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1638              DEFINES="$DEFINES -DUSE_LIBHPM"
1639              INCLUDES="$INCLUDES $HPMTINC"
1640              LIBS="$LIBS $HPMTLIB"
1641          fi
1642          fi
1643    fi
1644    if test ! "x$GSL" = x ; then
1645          echo "  Turning on use of GSL to control floating point calculations"
1646          echo "  Please make sure GSLINC, GSLLIB are defined"
1647          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1648          INCLUDES="$INCLUDES $GSLINC"
1649          LIBS="$LIBS $GSLLIB"
1650    fi
1651    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1652    if test ! "x$USE_EXTENDED_SRC" = x ; then
1653          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1654          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1655    fi
1656    
1657    printf "\n===  Checking system libraries  ===\n"
1658    printf "  Do we have the system() command using $FC...  "
1659    cat > genmake_tcomp.$FS <<EOF
1660          program hello
1661          call system('echo hi')
1662          end
1663    EOF
1664    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1665    RETVAL=$?
1666    if test "x$RETVAL" = x0 ; then
1667        HAVE_SYSTEM=t
1668        DEFINES="$DEFINES -DHAVE_SYSTEM"
1669        echo "yes"
1670    else
1671        HAVE_SYSTEM=
1672        echo "no"
1673    fi
1674    rm -f genmake_tcomp*
1675    
1676    printf "  Do we have the fdate() command using $FC...  "
1677    cat > genmake_tcomp.$FS <<EOF
1678          program hello
1679          CHARACTER*(128) string
1680          string = ' '
1681          call fdate( string )
1682          print *, string
1683          end
1684    EOF
1685    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1686    RETVAL=$?
1687    if test "x$RETVAL" = x0 ; then
1688        HAVE_FDATE=t
1689        DEFINES="$DEFINES -DHAVE_FDATE"
1690        echo "yes"
1691    else
1692        HAVE_FDATE=
1693        echo "no"
1694    fi
1695    rm -f genmake_tcomp*
1696    
1697    printf "  Do we have the etime() command using $FC...  "
1698    cat > genmake_tcomp.$FS <<EOF
1699          program hello
1700          REAL*4 ACTUAL, TARRAY(2)
1701          EXTERNAL ETIME
1702          REAL*4 ETIME
1703          actual = etime( tarray )
1704          print *, tarray
1705          end
1706    EOF
1707    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1708    RETVAL=$?
1709    if test "x$RETVAL" = x0 ; then
1710        HAVE_ETIME=t
1711        DEFINES="$DEFINES -DHAVE_ETIME"
1712        echo "yes"
1713    else
1714        HAVE_ETIME=
1715        echo "no"
1716  fi  fi
1717  if test "x$LINK" = x ; then  rm -f genmake_tcomp*
1718      LINK=$FC  
1719    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1720    check_HAVE_CLOC
1721    if test "x$HAVE_CLOC" != x ; then
1722        echo "yes"
1723    else
1724        echo "no"
1725        if test "x$EMBED_SRC" = xt ; then
1726            echo "    WARNING: you requested file embedding but it has"
1727            echo "      been disabled since C code cannot be called"
1728            EMBED_SRC=
1729        fi
1730  fi  fi
1731  if test "x$CPP" = x ; then  rm -f genmake_t*
1732      CPP="cpp"  
1733    printf "  Can we unlimit the stack size using $FC...  "
1734    check_HAVE_SETRLSTK
1735    if test "x$HAVE_SETRLSTK" = xt ; then
1736        echo "yes"
1737    else
1738        echo "no"
1739  fi  fi
1740  echo "#define A a" | $CPP > test_cpp 2>&1  rm -f genmake_t*
 RETVAL=$?  
 if test "x$RETVAL" != x0 ; then  
     cat <<EOF 1>&2  
1741    
1742  Error: C pre-processor "$CPP" failed the test case: please specify using:  printf "  Can we register a signal handler using $FC...  "
1743    check_HAVE_SIGREG
1744    if test "x$HAVE_SIGREG" = xt ; then
1745        echo "yes"
1746    else
1747        echo "no"
1748    fi
1749    rm -f genmake_t*
1750    
1751    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"  printf "  Can we use stat() through C calls...  "
1752    2) the "./genmake_local" file  check_HAVE_STAT
1753    if test "x$HAVE_STAT" != x ; then
1754        echo "yes"
1755    else
1756        echo "no"
1757    fi
1758    rm -f genmake_t*
1759    
1760  EOF  printf "  Can we create NetCDF-enabled binaries...  "
1761      exit 1  check_netcdf_libs
1762    if test "x$HAVE_NETCDF" != x ; then
1763        echo "yes"
1764  else  else
1765      rm -f test_cpp      echo "no"
1766  fi  fi
1767  if test "x$MAKEDEPEND" = x ; then  DEFINES="$DEFINES $IGNORE_TIME"
1768      MAKEDEPEND=makedepend  
1769    if test "x$EMBED_SRC" = xt ; then
1770        build_embed_encode
1771    fi
1772    if test "x$EMBED_SRC" = xt ; then
1773        ENABLE="$ENABLE embed_files"
1774  fi  fi
1775    
1776    
1777  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1778  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1779    MPI_LNKF=
1780  for d in $MODS ; do  for d in $MODS ; do
1781      if test ! -d $d ; then      if test ! -d $d ; then
1782          echo          echo
1783          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1784          exit 1          exit 1
1785      else      else
1786          echo -n " $d"          printf "$d "
1787          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1788          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1789            #-------------------------------------------------------
1790            # Put special links so that MPI specific files are used
1791            MPI_FILES=`(cd $d ; find . -name "*_mpi" -print)`
1792            for i in $MPI_FILES ; do
1793              ii=`echo $i | sed 's:^\./::'`
1794              name=`echo $ii | sed 's:_mpi::' `
1795              if test "x$MPI" = x ; then
1796              # NO: We undo an _mpi symbolically linked file
1797                if test -L $name ; then
1798                  cmp $name "$d/$ii" > /dev/null 2>&1
1799                  RETVAL=$?
1800                  if test "x$RETVAL" = x0 ; then
1801                    printf "Un-linking $name ; "
1802                    rm -f $name
1803                  fi
1804                fi
1805              else
1806              # YES: We symbolically link this file (with conditions if already there)
1807                if test -L $name ; then
1808                  cmp $d/$ii $name > /dev/null 2>&1
1809                  RETVAL=$?
1810                  yy=0 ;
1811                  for xx in $MPI_LNKF ; do if test $xx = $name ; then yy=1 ; fi ; done
1812                  if test "x$RETVAL" != x0 -a $yy = 0 ; then
1813                  # remove sym-link if different and has not just been linked
1814                    printf "Un-link + "
1815                    rm -f $name
1816                  fi
1817                  if test "x$RETVAL" = x0 ; then
1818                  # if identical, keep sym-link and keep record of it
1819                    MPI_LNKF="$MPI_LNKF $name"
1820                  fi
1821                fi
1822                if ! test -f $name ; then
1823                  # make sym-link and keep record of it
1824                    printf "Linking $ii to $name ; "
1825                    ln -sf $d/$ii $name
1826                    MPI_LNKF="$MPI_LNKF $name"
1827                fi
1828              fi
1829            done
1830            #-------------------------------------------------------
1831      fi      fi
1832  done  done
1833  echo  echo
1834    #echo "MPI_LNKF='$MPI_LNKF'"
1835    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1836  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1837      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1838  fi  fi
1839    
1840  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1841      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1842        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1843          EXEDIR=../exe          EXEDIR=../exe
1844      else      else
1845          EXEDIR=.          EXEDIR=.
# Line 701  if test "x${TOOLSDIR}" = x ; then Line 1854  if test "x${TOOLSDIR}" = x ; then
1854      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1855  fi  fi
1856  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1857      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1858      exit 1      exit 1
1859  fi  fi
1860  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1861      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1862        RETVAL=$?
1863        if test "x${RETVAL}" = x0 ; then
1864            S64='$(TOOLSDIR)/set64bitConst.sh'
1865        else
1866            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1867            RETVAL=$?
1868            if test "x${RETVAL}" = x0 ; then
1869                S64='$(TOOLSDIR)/set64bitConst.csh'
1870            else
1871                cat <<EOF
1872    
1873    ERROR: neither of the two default scripts:
1874    
1875        ${TOOLSDIR}/set64bitConst.sh
1876        ${TOOLSDIR}/set64bitConst.csh
1877    
1878      are working so please check paths or specify (with \$S64) a
1879      working version of this script.
1880    
1881    EOF
1882                exit 1
1883            fi
1884        fi
1885  fi  fi
1886    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1887    
1888  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1889    
# Line 715  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 1892  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1892  #  they appear as regular source code  #  they appear as regular source code
1893  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1894      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1895      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
1896      RETVAL=$?      RETVAL=$?
1897      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1898          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1899      else      else
1900          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1901          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1902          exit 1          exit 1
1903      fi      fi
1904  fi  fi
1905    
1906    #same for pkg/exch2 and pkg/regrid
1907    for pdir in exch2 regrid ; do
1908        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1909            echo "  Making source files in pkg/${pdir} from templates"
1910            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1
1911            RETVAL=$?
1912            if test "x${RETVAL}" = x0 ; then
1913                rm -f make_${pdir}.errors
1914            else
1915                echo "Error: problem encountered while building source files in pkg/${pdir}:"
1916                cat make_${pdir}.errors 1>&2
1917                exit 1
1918            fi
1919        fi
1920    done
1921    
1922  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1923  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1924      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 752  if test ! "x${RETVAL}" = x0 ; then Line 1945  if test ! "x${RETVAL}" = x0 ; then
1945      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
1946      exit 1      exit 1
1947  fi  fi
1948  source ./.pd_tmp  . ./.pd_tmp
1949  rm -f ./.pd_tmp  rm -f ./.pd_tmp
1950    
1951  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1952  #  file should eventually be added so that, for convenience, one can  #  file should eventually be added so that, for convenience, one can
1953  #  specify groups of packages using names like "ocean" and "atmosphere".  #  specify groups of packages using names like "ocean" and "atmosphere".
1954  echo  -n "  checking default package list:  "  echo "  checking default package list:  "
1955  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1956      for i in "." $MODS ; do      for i in "." $MODS ; do
1957          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
# Line 771  if test "x${PDEFAULT}" = x ; then Line 1964  if test "x${PDEFAULT}" = x ; then
1964      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1965  fi  fi
1966  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1967      echo "default packages file disabled"      echo "    default packages file disabled"
1968  else  else
1969      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1970          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1971      else      else
1972          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1973          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1974          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1975          RETVAL=$?          RETVAL=$?
1976          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1977              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1978              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1979              exit 1              exit 1
1980          fi          fi
# Line 790  else Line 1982  else
1982              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1983          done          done
1984          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1985          expand_pkg_groups          RET=1
1986            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1987          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1988      fi      fi
1989  fi  fi
1990    
1991  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1992    for i in $PACKAGES ; do
1993        echo $i >> ./.tmp_pack
1994    done
1995    for i in `grep  "-" ./.tmp_pack` ; do
1996        j=`echo $i | sed 's/[-]//'`
1997        DISABLE="$DISABLE $j"
1998    done
1999  pack=  pack=
2000  for p in $PACKAGES ; do  for p in $PACKAGES ; do
2001      addit="t"      addit="t"
# Line 812  PACKAGES="$pack" Line 2012  PACKAGES="$pack"
2012  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2013  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
2014  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2015    # Test if each explicitly referenced package exists
2016  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2017      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
2018        if test ! -d "$ROOTDIR/pkg/$j" ; then
2019          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
2020          exit 1          exit 1
2021      fi      fi
2022      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2023  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
2024  PACKAGES=  PACKAGES=
2025  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
2026      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2027  done  done
2028    rm -f ./.tmp_pack
2029  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
2030    
2031    #  Check for package MNC: if NetCDF is available, then build the MNC
2032    #  template files ; otherwise, delete mnc from the list of packages.
2033    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
2034    RETVAL=$?
2035    if test "x$RETVAL" = x0 ; then
2036        if test "x$HAVE_NETCDF" != xt ; then
2037            cat <<EOF
2038    
2039    *********************************************************************
2040    WARNING: the "mnc" package was enabled but tests failed to compile
2041      NetCDF applications.  Please check that:
2042    
2043      1) NetCDF is correctly installed for this compiler and
2044      2) the LIBS variable (within the "optfile") specifies the correct
2045           NetCDF library to link against.
2046    
2047      Due to this failure, the "mnc" package is now DISABLED.
2048    *********************************************************************
2049    
2050    EOF
2051            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2052            DISABLE="$DISABLE mnc"
2053        else
2054            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2055            RETVAL=$?
2056            if test "x${RETVAL}" = x0 ; then
2057                rm -f make_mnc.errors
2058            else
2059                echo "Error: problem encountered while building source files in pkg/mnc:"
2060                cat make_mnc.errors 1>&2
2061                exit 1
2062            fi
2063        fi
2064    fi
2065    
2066    #  Check for package PROFILES: if NetCDF is not available,
2067    #  then delete profiles from the list of available packages.
2068    echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1
2069    RETVAL=$?
2070    if test "x$RETVAL" = x0 ; then
2071        if test "x$HAVE_NETCDF" != xt ; then
2072            cat <<EOF
2073    
2074    *********************************************************************
2075    WARNING: the "profiles" package was enabled but tests failed to
2076      compile NetCDF applications.  Please check that:
2077    
2078      1) NetCDF is correctly installed for this compiler and
2079      2) the LIBS variable (within the "optfile") specifies the correct
2080           NetCDF library to link against.
2081    
2082      Due to this failure, the "profiles" package is now DISABLED.
2083    *********************************************************************
2084    
2085    EOF
2086            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2087            DISABLE="$DISABLE profiles"
2088        fi
2089    fi
2090    
2091  echo "  applying package dependency rules"  echo "  applying package dependency rules"
2092  ck=  ck=
2093  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
2094      i=0      i=0
2095      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2096      rtot=$nname      rtot=$nname
2097      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2098    
2099          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2100          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 867  while test "x$ck" != xtt ; do Line 2128  while test "x$ck" != xtt ; do
2128    
2129          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2130          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2131                #echo "   " $pname ": need to add :" $dname
2132              in_dis="f"              in_dis="f"
2133              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2134                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 891  while test "x$ck" != xtt ; do Line 2153  while test "x$ck" != xtt ; do
2153              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2154              exit 1              exit 1
2155          fi          fi
2156          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2157            #i=$(( $i + 1 ))
2158      done      done
2159      ck=$ck"t"      ck=$ck"t"
2160  done  done
# Line 910  for i in $PACKAGES ; do Line 2173  for i in $PACKAGES ; do
2173      fi      fi
2174  done  done
2175    
 #  This is compatible with the old genmake.  The "DISABLE_*" flags  
 #  need to be replaced by the "ALLOW_*" flags set below.  
 #  
 # echo -n "  Setting package-specific CPP flags:  "  
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
2176  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2177  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
 cat <<EOF >$PACKAGES_DOT_H".tmp"  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
   
 C  Packages disabled by genmake:  
 EOF  
2178  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2179  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2180  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2181  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2182  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2183  all_pack=  all_pack=
2184    DISABLED_PACKAGES=
2185  for n in $names ; do  for n in $names ; do
2186      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2187          has_pack="f"          has_pack="f"
# Line 959  for n in $names ; do Line 2192  for n in $names ; do
2192              fi              fi
2193          done          done
2194          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2195              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2196              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
 #           DEFINES="$DEFINES -U$undef"  
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
2197          fi          fi
2198      fi      fi
2199  done  done
2200  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2201  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2202      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2203      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2204  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2205    
2206  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2207      case $i in      case $i in
2208          aim_v23)          aim_v23)
2209              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2210              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
2211              ;;              ;;
2212      esac      esac
2213  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2214    
2215  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
2216    
2217  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
2218  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2219  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2220      STANDARDDIRS="eesupp model"      STANDARDDIRS="eesupp model"
2221  fi  fi
2222  for d in $STANDARDDIRS ; do  if test "x$STANDARDDIRS" != x ; then
2223      adr="$ROOTDIR/$d/src"      for d in $STANDARDDIRS ; do
2224      if test ! -d $adr ; then          adr="$ROOTDIR/$d/src"
2225          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
2226          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2227          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2228      else              exit 1
2229          SOURCEDIRS="$SOURCEDIRS $adr"          else
2230      fi              SOURCEDIRS="$SOURCEDIRS $adr"
2231      adr="$ROOTDIR/$d/inc"          fi
2232      if test ! -d $adr ; then          adr="$ROOTDIR/$d/inc"
2233          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
2234          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2235          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2236      else              exit 1
2237          INCLUDEDIRS="$INCLUDEDIRS $adr"          else
2238      fi              INCLUDEDIRS="$INCLUDEDIRS $adr"
2239  done          fi
2240        done
2241    fi
2242    
2243  echo "  Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2244  echo "    of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
2245  CPP_OPTIONS=  CPP_OPTIONS=
2246    CPP_EEOPTIONS=
2247  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
2248    names=`ls -1 "$ROOTDIR/pkg"`
2249  for i in $spaths ; do  for i in $spaths ; do
2250      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
2251      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
2252          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2253          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2254          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2255            for n in $names ; do
2256                test_for_package_in_cpp_options $CPP_OPTIONS $n
2257            done
2258        fi
2259        try="$i/CPP_EEOPTIONS.h"
2260        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2261            echo "    found CPP_EEOPTIONS=\"$try\""
2262            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2263    #**** not yet enabled ****
2264    #        test_for_mpi_in_cpp_eeoptions $try
2265    #**** not yet enabled ****
2266            CPP_EEOPTIONS="$try"
2267      fi      fi
2268  done  done
2269  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
2270      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2271      exit 1      exit 1
2272  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
2273    
2274  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2275  #  compiler.  #  compiler.
2276  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2277      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2278  fi  fi
2279  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2280  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2281      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2282      for j in $list_files ; do      for j in $list_files ; do
2283          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2284      done      done
2285  done  done
2286    if test ! "x"$FS = "x.f" ; then
2287  cat <<EOF > adjoint_sed      cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2288  s/call adopen(/call adopen ( mythid,\\      mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2289       \&           /g  fi
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
2290    
2291  echo  echo
2292  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2293  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2294  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2295      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2296          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2297      fi      fi
2298  done  done
2299    
2300    if test ! "x$DIVA" = x ; then
2301        echo "  Creating the pseudo-MPI include directory"
2302        INCLUDES="-I./mpi_headers $INCLUDES"
2303        rm -rf ./mpi_headers
2304        mkdir -p ./mpi_headers
2305    
2306        if test "x$MPIINCLUDEDIR" = x ; then
2307            if test "x$MPIHOME" = x ; then
2308                MPIHOME='/usr'
2309            fi
2310            MPIINCLUDEDIR='$MPIHOME/include'
2311        fi
2312        
2313        if test -r $MPIINCLUDEDIR/mpif.h ; then
2314            for i in $MPI_HEADER_FILES; do
2315                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2316            done
2317    
2318            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2319        else
2320            echo " We cannot create a copy of mpif.h!"
2321    #       exit -1
2322        fi
2323    fi
2324    
2325  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2326  rm -rf .links.tmp  rm -rf .links.tmp
2327  mkdir .links.tmp  mkdir .links.tmp
2328    touch .links.tmp/foo
2329    if test ! -r ".links.tmp/foo" ; then
2330        echo
2331        echo "ERROR : something is wrong with your directory permissions or"
2332        echo "   your user file-creation mask (\"umask\") since creating a"
2333        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2334        echo "   not working.  Please try setting your umask to something"
2335        echo "   sane such as:"
2336        echo
2337        echo "      umask 0002"
2338        echo
2339        echo "   and please verify that you have the proper permissions for"
2340        echo "   creating sub-directories and then reading files created"
2341        echo "   within them."
2342        echo
2343        exit 1
2344    fi
2345    rm -f .links.tmp/foo
2346    
2347    if test "x$OPENAD" != x ; then
2348        OAD_DONT_COMPILE="/dev/null"
2349        OAD_DONT_TRANSFORM="/dev/null"
2350        OAD_KEEP_ORIGINAL="/dev/null"
2351        OAD_CB2M_FILES="/dev/null"
2352        echo "  looking for dontCompile file:  "
2353        for i in "." $MODS ; do
2354            if test -r $i"/dontCompile" ; then
2355                OAD_DONT_COMPILE=$i"/dontCompile"
2356                echo "     found $OAD_DONT_COMPILE"
2357                break
2358            fi
2359        done
2360        echo "  looking for dontTransform file:  "
2361        for i in "." $MODS ; do
2362            if test -r $i"/dontTransform" ; then
2363                OAD_DONT_TRANSFORM=$i"/dontTransform"
2364                echo "     found $OAD_DONT_TRANSFORM"
2365                break
2366            fi
2367        done
2368        echo "  looking for keepOriginal file:  "
2369        for i in "." $MODS ; do
2370            if test -r $i"/keepOriginal" ; then
2371                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2372                echo "     found $OAD_KEEP_ORIGINAL"
2373                break
2374            fi
2375        done
2376        echo "  looking for cb2mFiles:  "
2377        for i in "." $MODS ; do
2378            if test -r $i"/cb2mFiles" ; then
2379                OAD_CB2M_FILES=$i"/cb2mFiles"
2380                echo "     found $OAD_CB2M_FILES"
2381                break
2382            fi
2383        done
2384        echo "   OpenAD exceptions:  "
2385    fi
2386    
2387  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2388  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2389  echo -n 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2390  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2391  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2392  echo -n 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2393  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2394    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2395  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2396  for d in $alldirs ; do  for d in $alldirs ; do
2397      deplist=      deplist=
2398      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2399      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2400        if test "x$OPENAD" != x ; then
2401            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2402        fi
2403      for sf in $sfiles ; do      for sf in $sfiles ; do
2404          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2405              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2406                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  ignore_f=f
2407                  touch .links.tmp/$sf                  case $d/$sf in
2408                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2409                  case $extn in                          ignore_f=t
2410                      F)                          ;;
2411                          echo    " \\"  >> srclist.inc                    ./AD_CONFIG.h)
2412                          echo -n " $sf" >> srclist.inc                          ignore_f=t
2413                            ;;
2414                      ./FC_NAMEMANGLE.h)
2415                            ignore_f=t
2416                            ;;
2417                      ./BUILD_INFO.h)
2418                            ignore_f=t
2419                            ;;
2420                      ./EMBEDDED_FILES.h)
2421                            ignore_f=t
2422                            ;;
2423                      *)
2424                            #  For the local directory *ONLY*,
2425                            #  ignore all soft-links
2426                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2427                                ignore_f=t
2428                            else
2429                                touch .links.tmp/$sf
2430                                deplist="$deplist $sf"
2431                            fi
2432                            ;;
2433                    esac
2434                    if test "x$ignore_f" = xf ; then
2435                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2436                        case $extn in
2437                          F)
2438                            echo    " \\"  >> F77srclist.tmp
2439                            printf " $sf" >> F77srclist.tmp
2440                            if test "x$OPENAD" != x ; then
2441                                basename=${sf%%.F}
2442                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2443                                if test -z "$isAD" ; then
2444                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2445                                    if test -z "$toBeIgnored" ; then
2446                                        echo    " \\"  >> nonADF77srclist.tmp
2447                                        printf " $sf" >> nonADF77srclist.tmp
2448                                    else
2449                                        echo "    not to be compiled   :  $sf"
2450                                    fi
2451                                else # file is initially listed as an AD file we want to exclude it
2452                                     # or we want to retain the untransformed version
2453                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2454                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2455                                    if test -n "$notToBeTransformed"; then
2456                                        echo "    not to be transformed:  $sf"
2457                                    fi
2458                                    if test -n "$untransformedVersionToBeKept" ; then
2459                                        echo "    original to be kept  :  $sf"
2460                                    fi    
2461                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2462                                        echo    " \\"  >> nonADF77srclist.tmp
2463                                        printf " $sf" >> nonADF77srclist.tmp
2464                                    fi
2465                                fi
2466                            fi
2467                          ;;                          ;;
2468                      F90)                      F90)
2469                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2470                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2471                          ;;                          ;;
2472                      c)                      c)
2473                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2474                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2475                          ;;                          ;;
2476                      h)                      h)
2477                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2478                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2479                          ;;                          ;;
2480                      flow)                      flow)
2481                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.tmp
2482                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.tmp
2483                          ;;                          ;;
2484                  esac                     esac
2485                    fi
2486              fi              fi
2487          fi          fi
2488      done      done
2489      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2490          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2491            echo "" >> srclinks.tmp
2492          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2493          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2494          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2495    # This may happen when make thinks that a header file has to be "remade"
2496    # because a module it depends on has changed.  In this case we do nothing.
2497            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2498          fi
2499      fi      fi
2500  done  done
2501  rm -rf .links.tmp  rm -rf .links.tmp
2502  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2503  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2504  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2505  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2506  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2507    echo "" >> ad_flow_files.tmp
2508    
2509  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2510      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
2511  fi  fi
2512  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1171  echo "#    $MACHINE" >> $MAKEFILE Line 2515  echo "#    $MACHINE" >> $MAKEFILE
2515  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2516  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2517  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2518  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
2519  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2520  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2521    
2522  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2523  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
2524  EXE_SVD=$EXECUTABLE"_svd"  EXE_SVD=$EXECUTABLE"_svd"
2525    
2526  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2527    #
2528    # OPTFILE="$OPTFILE"
2529  #  #
2530  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2531  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 1213  EXE_AD      = ${EXE_AD} Line 2559  EXE_AD      = ${EXE_AD}
2559  EXE_FTL     = ${EXE_FTL}  EXE_FTL     = ${EXE_FTL}
2560  EXE_SVD     = ${EXE_SVD}  EXE_SVD     = ${EXE_SVD}
2561    
2562    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2563    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2564    
2565    # These files are created by Makefile
2566    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2567  EOF  EOF
2568    
2569  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2570        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2571    else
2572        echo "EMBEDDED_FILES = " >>$MAKEFILE
2573    fi
2574    
2575    #  Note: figure out some way to add Hyades JAM libraries here
2576  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2577  # Unix ln (link)  # Unix ln (link)
2578  LN = ${LN}  LN = ${LN}
# Line 1230  KPP = ${KPP} Line 2586  KPP = ${KPP}
2586  FC = ${FC}  FC = ${FC}
2587  # Fortran compiler  # Fortran compiler
2588  F90C = ${F90C}  F90C = ${F90C}
2589    # C compiler
2590    CC = ${CC}
2591  # Link editor  # Link editor
2592  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2593    
2594  # Defines for CPP  # Defines for CPP
2595  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1241  INCLUDES = ${INCLUDES} Line 2599  INCLUDES = ${INCLUDES}
2599  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2600  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2601  # Optim./debug for FC  # Optim./debug for FC
2602  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2603  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2604  # Optim./debug for FC  # Optim./debug for FC
2605  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2606  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2607    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2608  # Flags for CC  # Flags for CC
2609  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2610  # Files that should not be optimized  # Files that should not be optimized
2611  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2612  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2613  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2614  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2615  # Name of the Mekfile  # Name of the Mekfile
2616  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2617    
2618  EOF  EOF
2619    
2620  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2621  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2622  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2623  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2624  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2625  echo               >> $MAKEFILE  cat ad_flow_files.tmp   >> $MAKEFILE
 echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  
 echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  
 echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2626    
2627  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
 rm -f ad_flow_files.inc  
2628    
2629  cat >>$MAKEFILE <<EOF  echo >> $MAKEFILE
2630    
2631  .SUFFIXES:  # add definitions for preprocessed sources
2632  .SUFFIXES: .o .f .p .F .c .F90 .f90  # and note that not all systems allow case sensitive extensions
2633    # hence the $FS and $FS90 here.
2634    # for fixed format f90 files we use ff90 or FF90 resp
2635    # but these are not expected to be the original source files
2636    
2637    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2638    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2639    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2640    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2641    echo >> $MAKEFILE
2642    echo '.SUFFIXES:' >> $MAKEFILE
2643    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2644    
2645    cat >>$MAKEFILE <<EOF
2646    
2647  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2648  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2649            @echo Creating \$@ ...
2650          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2651  depend:  depend:
2652          @make links          @make links
2653          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2654          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2655            -rm -f makedepend.out
2656    
2657  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  lib: libmitgcmuv.a
2658    
2659  small_f: \$(F77FILES) \$(F90FILES)  libmitgcmuv.a: \$(OBJFILES)
2660            ar rcv libmitgcmuv.a \$(OBJFILES)
2661            ar d   libmitgcmuv.a main.o
2662    
2663    links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2664    
2665    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2666    
2667  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2668          @printf 'running ... '          @printf 'running ... '
2669          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2670    
2671  clean:  clean:
2672          -cat AD_CONFIG.template > AD_CONFIG.h          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2673          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.o
2674            -rm -rf *.$FS *.flowdir
2675            -rm -rf *.f$FS90 *_mod.h *_mod.F90 *.FF90 *.mod-whirl ad_input*
2676            -rm -rf temp.sed
2677  Clean:  Clean:
2678          @make clean          @make clean
2679          @make cleanlinks          @make cleanlinks
2680          -rm -f Makefile.bak genmake_state genmake_*optfile make.log          -rm -f \$(SPECIAL_FILES)
2681            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log f90mkdepend.log *.bak
2682            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2683  CLEAN:  CLEAN:
2684          @make Clean          @make Clean
2685          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2686          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2687          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2688          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2689            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2690            -rm -rf mnc_test_*
2691    
2692  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2693  makefile:  makefile:
2694          ${0} $@          $THIS_SCRIPT $G2ARGS
2695  cleanlinks:  cleanlinks:
2696          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2697    
2698  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are created by make
2699  .F.f:  ${PACKAGES_DOT_H}:
2700            @echo Creating \$@ ...
2701            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2702    AD_CONFIG.h:
2703            @echo Creating \$@ ...
2704            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2705    FC_NAMEMANGLE.h:
2706            @echo Creating \$@ ...
2707            echo "$FC_NAMEMANGLE" > \$@
2708    
2709    BUILD_INFO.h:
2710            @echo Creating \$@ ...
2711    EOF
2712    
2713    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2714    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2715    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2716    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2717    
2718    if test "x$EMBED_SRC" = xt ; then
2719        cat >>$MAKEFILE <<EOF
2720    
2721    decode_files.o : EMBEDDED_FILES.h
2722    
2723    ##  \$(F77_PP_SRC_FILES)
2724    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2725            @echo Creating \$@ ...
2726            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2727            -rm -f all_fF.tar.gz
2728            -gzip all_fF.tar
2729    
2730    EMBEDDED_FILES.h : all_fF.tar.gz
2731            @echo Creating \$@ ...
2732            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2733    
2734    EOF
2735    fi
2736    
2737    cat >>$MAKEFILE <<EOF
2738    
2739    # The normal chain of rules is (  .F - .$FS - .o  )
2740    
2741    ## This nullifies any default implicit rules concerning these two file types:
2742    ## %.o : %.F
2743    
2744    .F.$FS:
2745          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2746  .f.o:  .$FS.o:
2747          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2748  .F90.f90:  .F90.$FS90:
2749            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2750    .FF90.f$FS90:
2751          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2752  .f90.o:  .$FS90.o:
2753          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2754    .f$FS90.o:
2755            cp \$< \$(basename  \$<).f90
2756            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2757  .c.o:  .c.o:
2758          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2759    .flow.flowdir:
2760            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2761    
2762  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2763  .F.p:  .F.p:
2764          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2765  .p.f:  .p.$FS:
2766          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2767    
2768    EOF
2769    
2770  #=========================================  #=========================================
2771  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2772    #===  for TAMC/TAF  ======================
2773    
2774    if test "x$OPENAD" = x ; then
2775    
2776    cat >>$MAKEFILE <<EOF
2777    
2778  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2779  TAF            = ${TAF}  TAF            = ${TAF}
# Line 1346  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2788  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2788  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2789  for i in $ad_vars ; do  for i in $ad_vars ; do
2790      name=$i      name=$i
2791      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2792      eval $t1      eval $t1
2793      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2794      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2795  done  done
2796    
2797  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2798  echo >> $MAKEFILE  echo >> $MAKEFILE
2799  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2800  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2801  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2802      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2803      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2804  done  done
2805  echo >> $MAKEFILE  echo >> $MAKEFILE
2806  rm -f ad_files  rm -f adSrcFiles.tmp
2807    
2808  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2809    
2810  # ... AD ...  # ... AD ...
2811  adall: ad_taf  adall: \$(EXE_AD)
2812  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
2813  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2814    
2815  ad_input_code.f: \$(SRCFILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2816            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2817          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2818          @make \$(F77FILES)          -rm -f ad_config.template
2819          @make \$(AD_FLOW_FILES)          @make \$(F77_PP_SRC_FILES)
2820          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          @make \$(FLOFILES)
2821            cat \$(FLOFILES) \$(AD_FILES) > ad_input_code.$FS
2822  ad_taf_output.f: ad_input_code.f  
2823          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
2824          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2825            ls -l ad_input_code_ad.$FS
2826  ad_taf: ad_taf_output.o \$(OBJFILES)          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2827          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)  
2828    adtafonly:
2829  ad_tamc_output.f: ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2830          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          ls -l ad_input_code_ad.$FS
2831          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2832    
2833    \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2834            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2835    
2836    ad_tamc_output.$FS: ad_input_code.$FS
2837            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2838            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2839    
2840  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2841          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2842    
2843    adonlyfwd:
2844            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2845    
2846    adtrick:
2847            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2848    
2849  # ... FTL ...  # ... FTL ...
2850  ftlall: ftl_taf  ftlall: ftl_taf
2851  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
2852  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
2853    
2854  ftl_input_code.f: \$(SRCFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2855            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2856          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2857          @make \$(F77FILES)          -rm -f ftl_config.template
2858            @make \$(F77_PP_SRC_FILES)
2859          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2860          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2861    
2862  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
2863          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2864          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_taf_output.f          ls -l ftl_input_code_ftl.$FS
2865            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2866    
2867    ftltafonly:
2868            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2869            ls -l ftl_input_code_ftl.$FS
2870            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2871    
2872  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2873          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2874    
2875  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.$FS: ftl_input_code.$FS
2876          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2877          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2878    
2879  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2880          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2881    
2882    
2883  # ... SVD ...  # ... SVD ...
2884  svd: svd_taf  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2885  svd_taf_f: svd_taf_output.f          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2886            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2887    svdall: svd_touch svd_taf
2888    
2889    svd_taf: \$(OBJFILES)
2890            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2891    
2892            @echo "--->>> Only COMPILE svd code! <<<---"
2893            @echo "--->>> Assumes you previously <<<---"
2894            @echo "--->>> did make svdtaf        <<<---"
2895    
2896    svd_touch:
2897            @echo "--->>> Only COMPILE svd code! <<<---"
2898            @echo "--->>> Assumes you previously <<<---"
2899            @echo "--->>> did make svdtaf        <<<---"
2900            touch ad_taf_output.$FS ftl_taf_output.$FS
2901            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2902            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2903            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2904            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2905            -rm -f ftl_config.template
2906    
2907  svd_input_code.f: \$(SRCFILES)  EOF
         cmp svd_config.template AD_CONFIG.h || cat svd_config.template > AD_CONFIG.h  
         @make \$(F77FILES)  
         @make \$(AD_FLOW_FILES)  
         cat \$(AD_FLOW_FILES) \$(AD_FILES) > svd_input_code.f  
2908    
2909  svd_taf_output.f: svd_input_code.f  fi
         \$(TAF) \$(SVD_TAF_FLAGS) \$(TAF_EXTRA) svd_input_code.f  
         cat svd_input_code_ad.f | sed -f adjoint_sed > svd_taf_output.f  
2910    
2911  svd_taf: svd_taf_output.o \$(OBJFILES)  #===  for OpenAD  ========================
         \$(LINK) -o ${EXE_SVD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) svd_taf_output.o \$(LIBS)  
2912    
2913    if test "x$OPENAD" != x ; then
2914    
2915  #=========================================  # ============ begin OpenAD specific section ==============
2916    
2917    cat >>$MAKEFILE <<EOF
2918    
2919    # all the source files linked from the various locations:
2920    ALL_LINKED_FILES= \
2921    \$(F77_SRC_FILES) \
2922    \$(C_SRC_FILES) \
2923    \$(H_SRC_FILES) \
2924    \$(F90_SRC_FILES) \
2925    \$(SPECIAL_FILES)
2926    
2927    ifndef OPENADROOT
2928      \$(error "Error:  environment variable OPENADROOT not defined!")
2929    endif
2930    
2931    ifndef XAIFSCHEMAROOT
2932      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2933    endif
2934    
2935    ifndef XAIFBOOSTERROOT
2936      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2937    endif
2938    
2939    EOF
2940    
2941    echo "  Add the source list for common block to module conversion "
2942    echo >> $MAKEFILE
2943    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2944    for i in `cat ${OAD_CB2M_FILES}` ; do
2945      echo    " \\" >> $MAKEFILE
2946      printf " $i" >> $MAKEFILE
2947    done
2948    echo >> $MAKEFILE
2949    
2950    echo "  Add the source list for AD code generation"
2951    echo >> $MAKEFILE
2952    printf "AD_FILES = " >> $MAKEFILE
2953    for i in `cat ${OAD_CB2M_FILES}` ; do
2954      echo    " \\" >> $MAKEFILE
2955      printf " ${i}_mod.f$FS90" >> $MAKEFILE
2956    done
2957    AD_FILES=`cat adSrcFiles.tmp`
2958    for i in $AD_FILES ; do
2959      basename=${i%%.f}
2960      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
2961      if test -z "$toBeIgnored" ; then
2962        echo    " \\" >> $MAKEFILE
2963        printf " $i" >> $MAKEFILE
2964      fi
2965    done
2966    echo >> $MAKEFILE
2967    rm -f adSrcFiles.tmp
2968    
2969    cat >>$MAKEFILE <<EOF
2970    
2971    adAll: \$(EXE_AD)
2972    .PHONY: adAll
2973    
2974    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
2975    
2976    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
2977    
2978    .PHONY: adDepend
2979    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
2980            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2981            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2982            -rm -f makedepend.out
2983    
2984    OPENAD_SUPPORT_F90_SRC_FILES = \
2985    w2f__types.F90 \
2986    OAD_active.F90 \
2987    OAD_cp.F90 \
2988    OAD_rev.F90 \
2989    OAD_tape.F90        
2990    
2991    OPENAD_SUPPORT_C_SRC_FILES = \
2992    iaddr.c \
2993    timeRatio.c
2994    
2995    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
2996            cat \$^ > \$@
2997    
2998    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
2999            cat \$^ > \$@
3000    
3001    f95_test.out: f95_test_mods.f90 f95_test.f90
3002            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3003            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3004    
3005    AD_OBJ_FILES=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) all_mods.xb.x2w.w2f.pp.o  ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.o \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3006    
3007    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(AD_OBJ_FILES)
3008            @echo Creating \$@ ...
3009            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES) \$(LIBS)
3010    
3011    # makefile debug rule
3012    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3013    .PHONY: openad
3014    
3015    # create the module files
3016    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3017            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3018    
3019    # create the header files
3020    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3021            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3022    
3023    # change everybody else to use the new module files:
3024    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3025            ../OAD_support/cb2mUseModules.bash $< ${MPI}
3026    
3027    # makefile debug rule
3028    small_f: \$(CB2M_F90_PP_SRC_FILES)
3029    .PHONY: small_f
3030    
3031    ad_output.txt: \$(EXE_AD)
3032            @printf 'linking data files ... '
3033            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3034            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3035            @printf 'running ... '
3036            @./\$(EXE_AD) > \$@
3037    
3038    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3039    ad_input_code.f$FS90: ../OAD_support/maxMinDefs.f \$(CB2M_AD_FILES)
3040            cat \$^ > \$@
3041    
3042    # strip all comments and blanks to reduce
3043    # the file size in order to reduce perl's memory requirements
3044    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3045            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3046    
3047    # mfef90 preprocessing
3048    # expand statement functions
3049    # expose mfef90 specific substring handling
3050    # add the w2f__types module
3051    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3052            ./mfef90 -r8 -z -F -N132 \$<
3053            mv \$<.B \$(basename \$<).B
3054            ./whirl2f -openad \$(basename \$<).B
3055            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3056    
3057    # canonicalizer
3058    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3059            ./preProcess.py -H -S \$< -o \$@
3060    
3061    # F -> WHIRL
3062    # note that the canonicalized version cuts off at col 72
3063    # doing this also for string constants which is ok as long
3064    # as we are in fixed mode and cut of exactly there.
3065    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3066    # characters respectively.
3067    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3068            ./mfef90 -r8 -z -F \$<
3069            mv \$<.B \$@
3070    
3071    # WHIRL -> XAIF
3072    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3073            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3074    
3075    # XAIF -> XAIF'
3076    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3077            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3078    
3079    # XAIF' -> WHIRL'
3080    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3081            ./xaif2whirl --debug 1 --structured ad_input_code_sf.w2f.pre.B \$<
3082    
3083    # WHIRL' -> F'
3084    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3085            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3086    
3087    # insert template directives
3088    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3089            ../OAD_support/insertTemplateDir.bash \$< \$@
3090    
3091    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3092    # postprocess F'
3093    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 multi-pp.pl \$(PPEXTRAS:.F=.f)
3094            perl multi-pp.pl -inline=../OAD_support/ad_inline.f \$<
3095            # the postprocessor still gets the name wrong
3096            cat \$<.pp | sed 's/RETURN//' > \$@
3097    
3098    # extract all transformed modules
3099    all_mods.xb.x2w.w2f.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3100            cat \$< | sed -n '/MODULE /,/END MODULE/p' > \$@
3101    
3102    # remove the transformed globals module from the
3103    # transformed ad_input_code file
3104    # and remove for now the duplicate variables
3105    # and fix 2 data statements
3106    ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3107            cat \$< | sed '/MODULE /,/END MODULE/d' | sed '/^      INTEGER(w2f__i4) DOLOOP_UB/d' > \$@
3108    
3109    # setup some links
3110    %.xsd:
3111            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3112    
3113    mfef90:
3114            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3115    
3116    # link the support files:
3117    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3118            \$(LN) ../OAD_support/\$@ .
3119    
3120    whirl2xaif xaif2whirl:
3121            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3122    
3123    %.pl:
3124            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3125    
3126    preProcess.py:
3127            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3128    
3129    whirl2f whirl2f_be:
3130            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3131    
3132    oadDriver:
3133            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3134    
3135    # ============ end OpenAD specific section ==============
3136    
3137  EOF  EOF
3138    
3139    fi
3140    
3141    #=========================================
3142    
3143  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3144      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3145  fi  fi
# Line 1450  for i in $KPPFILES ; do Line 3151  for i in $KPPFILES ; do
3151      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3152          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3153      fi      fi
3154      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3155  done  done
3156    
3157  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1460  for i in $NOOPTFILES ; do Line 3161  for i in $NOOPTFILES ; do
3161      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3162          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3163      fi      fi
3164      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3165      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3166  done  done
3167    
# Line 1473  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3174  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3174    
3175  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3176    
3177  #  Write the "template" files for the adjoint builds  # Create special header files
3178  cat >AD_CONFIG.template <<EOF  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3179  C  WARNING: This file is automatically generated by genmake2 and  if test ! -f $PACKAGES_DOT_H ; then
3180  C    used by the Makefile rules.  Please DO NOT EDIT this file      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3181  C    unless you are CERTAIN that you know what you are doing.  else
3182        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
3183  #undef ALLOW_ADJOINT_RUN      RETVAL=$?
3184  #undef ALLOW_TANGENTLINEAR_RUN      if test "x$RETVAL" = x0 ; then
3185  #undef ALLOW_ECCO_OPTIMIZATION          rm -f $PACKAGES_DOT_H".tmp"
3186  EOF      else
3187  cat >ad_config.template <<EOF          mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
3188  C  WARNING: This file is automatically generated by genmake2 and          mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3189  C    used by the Makefile rules.  Please DO NOT EDIT this file      fi
3190  C    unless you are CERTAIN that you know what you are doing.  fi
3191    if test ! -f AD_CONFIG.h ; then
3192  #define ALLOW_ADJOINT_RUN      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
3193  #undef ALLOW_TANGENTLINEAR_RUN  fi
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >ftl_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you are doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #define ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >svd_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you are doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #undef ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cp AD_CONFIG.template AD_CONFIG.h  
3194    
3195    
3196  #  Write the "state" for future records  #  Write the "state" for future records
3197  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
3198      echo -n "" > genmake_state      printf "" > genmake_state
3199      for i in $gm_state ; do      for i in $gm_state ; do
3200          t1="t2=\$$i"          t1="t2=\$$i"
3201          eval $t1          eval $t1

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