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revision 1.74 by adcroft, Wed Mar 24 17:12:51 2004 UTC revision 1.185 by jmc, Fri Mar 27 20:18:07 2009 UTC
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24  }  }
25    
26  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
27  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
29      cpp_options=$1      cpp_options=$1
30      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38  }  }
39    
40  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 39  test_for_string_in_file() { Line 47  test_for_string_in_file() {
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
49          grep -i "$strng" $file          grep -i "$strng" $file
50          return 1          exit 99
51      fi      fi
52      return 0      return 0
53  }  }
# Line 73  expand_pkg_groups() { Line 81  expand_pkg_groups() {
81      fi      fi
82  }  }
83    
84    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
85    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
86    check_for_broken_Ff()  {
87        #  Do we have defaults for $FS and/or $FS90 ?
88        tfs=f
89        tfs9=f90
90        if test "x$FS" != x ; then
91            tfs="$FS"
92        fi
93        if test "x$FS90" != x ; then
94            tfs9="$FS90"
95        fi
96    
97        #  First check the ability to create a *.F/.f pair.
98        cat <<EOF >> genmake_hello.F
99          program hello
100          write(*,*) 'hi'
101          stop
102          end
103    EOF
104        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
105        RETVAL=$?
106        if test "x$RETVAL" != x0 ; then
107            if test "x$FS" = x ; then
108                FS='for'
109                FS90='fr9'
110                check_for_broken_Ff
111            else
112                cat <<EOF 2>&1
113    ERROR: Your file system cannot distinguish between *.F and *.f files
114      (fails the "cp" test) and this program cannot find a suitable
115      replacement extension.  Please try a different build environment or
116      contact the <MITgcm-support@mitgcm.org> list for help.
117    
118    EOF
119                exit -1
120            fi
121            return
122        fi
123        rm -f genmake_hello.*
124    
125        #  Check the ability of ${MAKE} and ${LN} to use the current set
126        #  of extensions.
127        cat <<EOF >> genmake_hello.F
128          program hello
129          write(*,*) 'hi'
130          stop
131          end
132    EOF
133        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
134        cat <<EOF >> $MAKEFILE
135    .SUFFIXES:
136    .SUFFIXES: .$tfs .F
137    .F.$tfs:
138            $LN \$< \$@
139    EOF
140        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
141        RETVAL=$?
142        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
143            if test "x$FS" = x ; then
144                FS='for'
145                FS90='fr9'
146                check_for_broken_Ff
147            else
148                cat <<EOF 2>&1
149    ERROR: Your file system cannot distinguish between *.F and *.f files
150      (fails the "make/ln" test) and this program cannot find a suitable
151      replacement extension.  Please try a different build environment or
152      contact the <MITgcm-support@mitgcm.org> list for help.
153    
154    EOF
155                exit -1
156                return
157            fi
158        fi
159        rm -f genmake_hello.* $MAKEFILE
160        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
161    
162        #  If we make it here, use the extensions
163        FS=$tfs
164        FS90=$tfs9
165        return
166    }
167    
168    
169    look_for_makedepend()  {
170    
171        #  The "original" makedepend is part of the Imake system that is
172        #  most often distributed with XFree86 or with an XFree86 source
173        #  package.  As a result, many machines (eg. generic Linux) do not
174        #  have a system-default "makedepend" available.  For those
175        #  systems, we have two fall-back options:
176        #
177        #    1) a makedepend implementation shipped with the cyrus-imapd
178        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
179        #
180        #    2) a known-buggy xmakedpend shell script
181        #
182        #  So the choices are, in order:
183        #
184        #    1) use the user-specified program
185        #    2) use a system-wide default
186        #    3) locally build and use the cyrus implementation
187        #    4) fall back to the buggy local xmakedpend script
188        #
189        if test "x${MAKEDEPEND}" = x ; then
190            which makedepend > /dev/null 2>&1
191            RV0=$?
192            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
193            #  echo 'MAKEFILE="'$MAKEFILE'"'
194            cat <<EOF >> $MAKEFILE
195    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
196    #
197    #   Some "makedepend" implementations will die if they cannot
198    #   find a Makefile -- so this file is here to gives them an
199    #   empty one to find and parse.
200    EOF
201            cat <<EOF >> genmake_tc.f
202          program test
203          write(*,*) 'test'
204          stop
205          end
206    EOF
207            makedepend genmake_tc.f > /dev/null 2>&1
208            RV1=$?
209            test -f $MAKEFILE  &&  rm -f $MAKEFILE
210            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
211            if test "x${RV0}${RV1}" = x00 ; then
212                MAKEDEPEND=makedepend
213            else
214                echo "    a system-default makedepend was not found."
215                
216                #  Try to build the cyrus implementation
217                build_cyrus_makedepend
218                RETVAL=$?
219                if test "x$RETVAL" != x0 ; then
220                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
221                fi
222                rm -f ./genmake_cy_md
223            fi
224        else
225            #  echo "MAKEDEPEND=${MAKEDEPEND}"
226            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
227            RETVAL=$?
228            if test x"$RETVAL" = x0 ; then
229                build_cyrus_makedepend
230            fi
231        fi
232    }
233    
234    
235    build_cyrus_makedepend()  {
236        rm -f ./genmake_cy_md
237        (
238            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
239                &&  ./configure > /dev/null 2>&1  \
240                &&  make > /dev/null 2>&1
241            if test -x ./makedepend.exe ; then
242                $LN ./makedepend.exe ./makedepend
243            fi
244            ./makedepend ifparser.c > /dev/null 2>&1  \
245                &&  echo "true"
246        ) > ./genmake_cy_md
247        grep true ./genmake_cy_md > /dev/null 2>&1
248        RETVAL=$?
249        rm -f ./genmake_cy_md
250        if test "x$RETVAL" = x0 ; then
251            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
252            return 0
253        else
254            echo "WARNING: unable to build cyrus-imapd-makedepend"
255            return 1
256        fi
257    }
258    
259    
260    build_embed_encode()
261    {
262        printf "  building the embed-encode utility...  "
263        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265                echo
266                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267                echo
268                EMBED_SRC=f
269                return 1
270            fi
271            clist="cc gcc c89 $CC"
272            for ic in $clist ; do
273                comm="$ic -o encode_files encode_files.c"
274                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275                RETVAL=$?
276                if test "x$RETVAL" = x0 ; then
277                    echo "OK"
278                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279                    return 0
280                fi
281            done
282            echo
283            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
284            echo "      so it has been disabled"
285            echo
286            EMBED_SRC=f
287            return 1
288        fi
289        echo "OK"
290        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291    }
292    
293    
294  # Guess possible config options for this host  # Guess possible config options for this host
295  find_possible_configs()  {  find_possible_configs()  {
296    
# Line 83  find_possible_configs()  { Line 301  find_possible_configs()  {
301      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
302      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
303      PLATFORM=$tmp3      PLATFORM=$tmp3
304        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
305      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
306      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
307            
# Line 102  find_possible_configs()  { Line 321  find_possible_configs()  {
321          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
322      fi      fi
323    
324      #  The "original" makedepend is part of the Imake system that is      look_for_makedepend
325      #  most often distributed with XFree86 or with an XFree86 source  
326      #  package.  As a result, many machines (eg. generic Linux) do not      #================================================================
327      #  have a system-default "makedepend" available.  For those      #  look for possible C compilers
328      #  systems, we have two fall-back options:      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329      #      p_CC=
330      #    1) a makedepend implementation shipped with the cyrus-imapd      for c in $tmp ; do
331      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/          rm -f ./genmake_hello.c  ./genmake_hello
332      #          cat >> genmake_hello.c << EOF
333      #    2) a known-buggy xmakedpend shell script  #include <stdio.h>
334      #  int main(int argc, char **argv) {
335      #  So the choices are, in order:    printf("Hello!\n");
336      #    return 0;
337      #    1) use the user-specified program  }
338      #    2) use a system-wide default  EOF
339      #    3) locally build and use the cyrus implementation          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
340      #    4) fall back to the buggy local xmakedpend script          RETVAL=$?
341      #          if test "x${RETVAL}" = x0 ; then
342      if test "x${MAKEDEPEND}" = x ; then              p_CC="$p_CC $c"
343        which makedepend > /dev/null 2>&1          fi
344        RETVAL=$?      done
345        if test ! "x${RETVAL}" = x0 ; then      rm -f ./genmake_hello.c ./genmake_hello
346           echo "    a system-default makedepend was not found."      if test "x${p_CC}" = x ; then
347            cat 1>&2 <<EOF
348           #  Try to build the cyrus impl  
349           rm -f ./genmake_cy_md  Error: No C compilers were found in your path.  Please specify one using:
350           (  
351               cd $ROOTDIR/tools/cyrus-imapd-makedepend  \      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
352                   &&  ./configure > /dev/null 2>&1  \      2) the CC or MITGCM_CC environment variables.
353                   &&  make > /dev/null 2>&1  \  
354                   &&  ./makedepend ifparser.c > /dev/null 2>&1  \  EOF
355                   &&  echo "true"          exit 1
356           ) > ./genmake_cy_md      else
357           grep true ./genmake_cy_md > /dev/null 2>&1          echo "  The possible C compilers found in your path are:"
358           RETVAL=$?          echo "   "$p_CC
359           if test "x$RETVAL" = x0 ; then          if test "x$CC" = x ; then
360               MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'              CC=`echo $p_CC | $AWK '{print $1}'`
361           else              echo "  Setting C compiler to: "$CC
362               MAKEDEPEND='$(TOOLSDIR)/xmakedepend'          fi
          fi  
          rm -f ./genmake_cy_md  
       fi  
363      fi      fi
364    
365      # look for possible fortran compilers      #================================================================
366      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      #  look for possible FORTRAN compilers
367        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 172  Error: No Fortran compilers were found i Line 389  Error: No Fortran compilers were found i
389    
390      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
391      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
392      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
393    
394  EOF  EOF
395          exit 1          exit 1
396      else      else
397          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
398          echo "   "$p_FC          echo "   "$p_FC
399          if test "x$FC" = x ; then      fi
400              FC=`echo $p_FC | $AWK '{print $1}'`  
401              echo "  Setting FORTRAN compiler to: "$FC      #  Use the first of the compilers found in the current PATH
402          fi      #  that has a correctly-named optfile
403        if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
404            for i in $p_FC ; do
405                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
406                if test -r $OPTFILE ; then
407                    echo "  Setting OPTFILE to: "$OPTFILE
408                    break
409                fi
410            done
411      fi      fi
412    
413      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
# Line 274  Usage: "$0" [OPTIONS] Line 499  Usage: "$0" [OPTIONS]
499      -help | --help | -h | --h      -help | --help | -h | --h
500            Print this help message and exit.            Print this help message and exit.
501    
502        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
503          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
504              Use "NAME" as the adoptfile.  By default, the file at
505              "tools/adjoint_options/adjoint_default" will be used.
506    
507      -nooptfile | --nooptfile      -nooptfile | --nooptfile
508        -optfile NAME | --optfile NAME | -of NAME | --of NAME        -optfile NAME | --optfile NAME | -of NAME | --of NAME
509        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
# Line 338  Usage: "$0" [OPTIONS] Line 568  Usage: "$0" [OPTIONS]
568            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
569            "usual suspects" such as g77, f77, etc.            "usual suspects" such as g77, f77, etc.
570    
571        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
572              Use "NAME" as the C compiler.  By default, genmake
573              will search for a working compiler by trying a list of
574              "usual suspects" such as gcc, c89, cc, etc.
575    
576      -[no]ieee | --[no]ieee      -[no]ieee | --[no]ieee
577            Do or don't use IEEE numerics.  Note that this option            Do or don't use IEEE numerics.  Note that this option
578            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
579            is being used.            is being used.
580    
581        -ignoretime | -ignore_time | --ignoretime | --ignore_time
582              Ignore all the "wall clock" routines entirely.  This will
583              not in any way hurt the model results -- it simply means
584              that the code that checks how long the model spends in
585              various routines will give junk values.
586    
587        -ts | --ts
588              Produce timing information per timestep
589        -papis | --papis
590              Produce summary MFlop/s (and IPC) with PAPI per timestep
591        -pcls | --pcls
592              Produce summary MFlop/s etc. with PCL per timestep
593        -foolad | --foolad
594              Fool the AD code generator
595        -papi | --papi
596              Performance analysis with PAPI
597        -pcl | --pcl
598              Performance analysis with PCL
599        -hpmt | --hpmt
600              Performance analysis with the HPM Toolkit
601    
602        -gsl | --gsl
603              Use GSL to control floating point rounding and precision
604        -devel | --devel
605              Add additional warning and debugging flags for development
606    
607      -mpi | --mpi      -mpi | --mpi
608            Include MPI header files and link to MPI libraries            Include MPI header files and link to MPI libraries
609      -mpi=PATH | --mpi=PATH      -mpi=PATH | --mpi=PATH
610            Include MPI header files and link to MPI libraries using MPI_ROOT            Include MPI header files and link to MPI libraries using MPI_ROOT
611            set to PATH. i.e. Include files from $PATH/include, link to libraries            set to PATH. i.e. Include files from \$PATH/include, link to libraries
612            from $PATH/lib and use binaries from $PATH/bin.            from \$PATH/lib and use binaries from \$PATH/bin.
613    
614        -es | --es | -embed-source | --embed-source
615              Embed a tarball containing the full source code
616              (including the Makefile, etc.) used to build the
617              executable [off by default]
618    
619      -bash NAME      -bash NAME
620            Explicitly specify the Bourne or BASH shell to use            Explicitly specify the Bourne or BASH shell to use
# Line 373  EOF Line 639  EOF
639    
640  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
641  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
642    
643        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
644        if test ! "x$FC_NAMEMANGLE" = x ; then
645            return 0
646        fi
647    
648      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
649            
650      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
# Line 390  WARNING: Please contact <MITgcm-support@ Line 662  WARNING: Please contact <MITgcm-support@
662  EOF  EOF
663          return 1          return 1
664      fi      fi
665      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
666      RETVAL=$?      RETVAL=$?
667      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
668          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 402  WARNING: Please contact <MITgcm-support@ Line 674  WARNING: Please contact <MITgcm-support@
674  EOF  EOF
675          return 1          return 1
676      fi      fi
677      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
678        subroutine tcall( string )        subroutine tcall( string )
679        character*(*) string        character*(*) string
680        call tsub( string )        call tsub( string )
681        end        end
682  EOF  EOF
683      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
684      RETVAL=$?      RETVAL=$?
685      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
686          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 420  WARNING: Please contact <MITgcm-support@ Line 692  WARNING: Please contact <MITgcm-support@
692  EOF  EOF
693          return 1          return 1
694      fi      fi
695      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
696      RETVAL=$?      RETVAL=$?
697      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
698          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 474  void FC_NAMEMANGLE(cloc) ( double *curti Line 746  void FC_NAMEMANGLE(cloc) ( double *curti
746   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
747  }  }
748  EOF  EOF
749      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
750        echo $COMM >> genmake_warnings
751        $COMM >> genmake_warnings 2>&1
752      RET_C=$?      RET_C=$?
753      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
754        program hello        program hello
755        Real*8 wtime        REAL*8 wtime
756        external cloc        external cloc
757        call cloc(wtime)        call cloc(wtime)
758        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
759        end program hello        end
760  EOF  EOF
761      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
762        echo $COMM >> genmake_warnings
763        $COMM >> genmake_warnings 2>&1
764      RET_F=$?      RET_F=$?
765      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
766      RETVAL=$?      RETVAL=$?
767      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
768          HAVE_CLOC=t          HAVE_CLOC=t
# Line 496  EOF Line 772  EOF
772  }  }
773    
774    
775    check_HAVE_SIGREG()  {
776        if test ! "x$HAVE_SIGREG" = x ; then
777            return
778        fi
779        get_fortran_c_namemangling
780        cat <<EOF > genmake_tc_1.c
781    $FC_NAMEMANGLE
782    #include <stdlib.h>
783    #include <stdio.h>
784    #include <signal.h>
785    #include <errno.h>
786    #include <ucontext.h>
787    
788    int * ip;
789    
790    static void killhandler(
791        unsigned int sn, siginfo_t  si, struct ucontext *sc )
792    {
793        *ip = *ip + 1;
794        return;
795    }
796    
797    void FC_NAMEMANGLE(sigreg) (int * aip)
798    {
799        struct sigaction s;
800        ip = aip;
801        s.sa_flags = SA_SIGINFO;
802        s.sa_sigaction = (void *)killhandler;
803        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
804            printf("Sigaction returned error = %d\n", errno);
805            exit(0);
806        }
807        return;
808    }
809    EOF
810        COMM="$CC $CFLAGS -c genmake_tc_1.c"
811        echo $COMM >> genmake_warnings
812        $COMM >> genmake_warnings 2>&1
813        RET_C=$?
814        cat <<EOF > genmake_tc_2.$FS
815          program hello
816          integer anint
817          common /iv/ anint
818          external sigreg
819          call sigreg(anint)
820          end
821    EOF
822        echo >> genmake_warnings
823        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
824        cat genmake_tc_2.$FS >> genmake_warnings
825        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
826        echo $COMM >> genmake_warnings
827        $COMM >> genmake_warnings 2>&1
828        RETVAL=$?
829        if test "x$RETVAL" = x0 ; then
830            HAVE_SIGREG=t
831            DEFINES="$DEFINES -DHAVE_SIGREG"
832        fi
833        rm -f genmake_tc*
834    }
835    
836    
837    check_HAVE_SETRLSTK()  {
838        if test "x$HAVE_SETRLSTK" = xt ; then
839            DEFINES="$DEFINES -DHAVE_SETRLSTK"
840            return
841        fi  
842        if test ! "x$HAVE_SETRLSTK" = x ; then
843            return
844        fi
845        get_fortran_c_namemangling
846        cat <<EOF > genmake_tc_1.c
847    $FC_NAMEMANGLE
848    #include <sys/time.h>
849    #include <sys/resource.h>
850    #include <unistd.h>
851    void FC_NAMEMANGLE(setrlstk) ()
852    {
853        struct rlimit rls;
854        rls.rlim_cur = RLIM_INFINITY;
855        rls.rlim_max = RLIM_INFINITY;
856        setrlimit(RLIMIT_STACK, &rls);
857        return;
858    }
859    EOF
860        COMM="$CC $CFLAGS -c genmake_tc_1.c"
861        echo $COMM >> genmake_warnings
862        $COMM >> genmake_warnings 2>&1
863        RET_C=$?
864        cat <<EOF > genmake_tc_2.$FS
865          program hello
866          external setrlstk
867          call setrlstk()
868          end
869    EOF
870        echo >> genmake_warnings
871        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
872        cat genmake_tc_2.$FS >> genmake_warnings
873        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
874        echo $COMM >> genmake_warnings
875        $COMM >> genmake_warnings 2>&1
876        RETVAL=$?
877        if test "x$RETVAL" = x0 ; then
878            HAVE_SETRLSTK=t
879            DEFINES="$DEFINES -DHAVE_SETRLSTK"
880        fi
881        rm -f genmake_tc*
882    }
883    
884    
885    check_HAVE_STAT()  {
886        get_fortran_c_namemangling
887        cat <<EOF > genmake_tc_1.c
888    $FC_NAMEMANGLE
889    #include <stdio.h>
890    #include <stdlib.h>
891    #include <unistd.h>
892    #include <sys/stat.h>
893    #include <sys/types.h>
894    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
895    {
896        char name[512];
897        struct stat astat;
898    
899        name[0] = 'a'; name[1] = '\0';
900        if (! stat(name, &astat))
901            *nbyte = (int)(astat.st_size);
902        else
903            *nbyte = -1;
904    }
905    EOF
906        COMM="$CC $CFLAGS -c genmake_tc_1.c"
907        echo $COMM >> genmake_warnings
908        $COMM >> genmake_tc.log 2>&1
909        RET_C=$?
910        cat <<EOF > genmake_tc_2.$FS
911          program hello
912          integer nbyte
913          call tfsize(nbyte)
914          print *," HELLO WORLD", nbyte
915          end
916    EOF
917        echo >> genmake_warnings
918        echo "running: check_HAVE_STAT()" >> genmake_warnings
919        cat genmake_tc_2.$FS >> genmake_warnings
920        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
921        echo $COMM >> genmake_warnings
922        $COMM >> genmake_tc.log 2>&1
923        RETVAL=$?
924        if test "x$RETVAL" = x0 ; then
925            HAVE_STAT=t
926            DEFINES="$DEFINES -DHAVE_STAT"
927        fi
928        rm -f genmake_tc*
929    }
930    
931    
932  check_netcdf_libs()  {  check_netcdf_libs()  {
933        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
934            return
935        fi
936        echo >> genmake_warnings
937        echo "running: check_netcdf_libs()" >> genmake_warnings
938      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
939        program fgennc        program fgennc
940  #include "netcdf.inc"  #include "netcdf.inc"
941    EOF
942        if test ! "x$MPI" = x ; then
943            echo '#include "mpif.h"' >> genmake_tnc.F
944        fi
945        cat <<EOF >> genmake_tnc.F
946        integer iret, ncid, xid        integer iret, ncid, xid
947        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
948        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
# Line 509  check_netcdf_libs()  { Line 952  check_netcdf_libs()  {
952        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
953        end        end
954  EOF  EOF
955      $CPP genmake_tnc.F > genmake_tnc.f  \      echo "===  genmake_tnc.F  ===" > genmake_tnc.log
956          &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1      cat genmake_tnc.F >> genmake_tnc.log
957        echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
958        RET_CPP=f
959        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
960        echo "$COMM" >> genmake_tnc.log
961        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
962        if test "x$RET_CPP" = xf ; then
963            echo "  WARNING: CPP failed to pre-process the netcdf test." \
964                >> genmake_tnc.log
965            echo "    Please check that \$INCLUDES is properly set." \
966                >> genmake_tnc.log
967        fi
968        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
969        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
970        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
971            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
972      RET_COMPILE=$?      RET_COMPILE=$?
973      test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1      cat genmake_tnc.log >> genmake_warnings
974      RETVAL=$?  
975      if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then      #EH3  Remove test program execution for machines that either disallow
976        #EH3  execution or cannot support it (eg. cross-compilers)
977        #EH3
978        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
979        #EH3 RETVAL=$?
980        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
981    
982        if test "x$RET_COMPILE" = x0 ; then
983          HAVE_NETCDF=t          HAVE_NETCDF=t
984      else      else
985          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
986          $CPP genmake_tnc.F > genmake_tnc.f  \          echo "try again with added '-lnetcdf'" > genmake_tnc.log
987              &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
988              $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
989            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
990            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
991                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
992                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
993          RET_COMPILE=$?          RET_COMPILE=$?
994          test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1          cat genmake_tnc.log >> genmake_warnings
995          RETVAL=$?          if test "x$RET_COMPILE" = x0 ; then
         if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then  
996              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
997              HAVE_NETCDF=t              HAVE_NETCDF=t
998          else          else
999            # try again with "-lnetcdff" added to the libs
1000                echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1001                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1002                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1003                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1004                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1005                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1006                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1007                RET_COMPILE=$?
1008              cat genmake_tnc.log >> genmake_warnings              cat genmake_tnc.log >> genmake_warnings
1009                if test "x$RET_COMPILE" = x0 ; then
1010                    LIBS="$LIBS -lnetcdff -lnetcdf"
1011                    HAVE_NETCDF=t
1012                fi
1013          fi          fi
1014      fi      fi
1015      rm -f genmake_tnc*      rm -f genmake_tnc*
# Line 547  PLATFORM= Line 1028  PLATFORM=
1028  LN=  LN=
1029  S64=  S64=
1030  KPP=  KPP=
1031  FC=  #FC=
1032  CPP=  #CC=gcc
1033    #CPP=
1034  LINK=  LINK=
1035  DEFINES=  DEFINES=
1036  PACKAGES=  PACKAGES=
1037  ENABLE=  ENABLE=
1038  DISABLE=  DISABLE=
1039  MAKEFILE=  # MAKEFILE=
1040  MAKEDEPEND=  # MAKEDEPEND=
1041  PDEPEND=  PDEPEND=
1042  DUMPSTATE=t  DUMPSTATE=t
1043  PDEFAULT=  PDEFAULT=
1044  OPTFILE=  OPTFILE=
1045  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1046  FFLAGS=  FFLAGS=
1047  FOPTIM=  FOPTIM=
1048    FEXTRAFLAGS=
1049    USE_EXTENDED_SRC=
1050    EXTENDED_SRC_FLAG=
1051  CFLAGS=  CFLAGS=
1052  KFLAGS1=  KFLAGS1=
1053  KFLAGS2=  KFLAGS2=
# Line 573  NOOPTFILES= Line 1058  NOOPTFILES=
1058  NOOPTFLAGS=  NOOPTFLAGS=
1059  MPI=  MPI=
1060  MPIPATH=  MPIPATH=
1061    TS=
1062    PAPIS=
1063    PCLS=
1064    FOOLAD=
1065    PAPI=
1066    PCL=
1067    HPMT=
1068    GSL=
1069    DEVEL=
1070    HAVE_TEST_L=
1071    
1072  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1073  HAVE_SYSTEM=  HAVE_SYSTEM=
1074  HAVE_FDATE=  HAVE_FDATE=
1075  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1076  HAVE_CLOC=  HAVE_CLOC=
1077    # HAVE_SETRLSTK=
1078    HAVE_STAT=
1079  HAVE_NETCDF=  HAVE_NETCDF=
1080    HAVE_ETIME=
1081    IGNORE_TIME=
1082    
1083  MODS=  MODS=
1084  TOOLSDIR=  TOOLSDIR=
# Line 590  STANDARDDIRS="USE_THE_DEFAULT" Line 1089  STANDARDDIRS="USE_THE_DEFAULT"
1089  G2ARGS=  G2ARGS=
1090  BASH=  BASH=
1091  PWD=`pwd`  PWD=`pwd`
1092  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1093  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1094  THISHOSTNAME=`hostname`  EMBED_SRC=
1095    THISHOST=`hostname`
1096  THISCWD=`pwd`  THISCWD=`pwd`
1097  THISDATE=`date`  THISDATE=`date`
1098    THISUSER=`echo $USER`
1099    THISVER=
1100  MACHINE=`uname -a`  MACHINE=`uname -a`
1101  EXECUTABLE=  EXECUTABLE=
1102  EXEHOOK=  EXEHOOK=
# Line 604  IEEE= Line 1106  IEEE=
1106  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1107      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1108  fi  fi
1109    FS=
1110    FS90=
1111    
1112  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1113  AD_OPTFILE=  AD_OPTFILE=
# Line 621  TAMC_EXTRA= Line 1125  TAMC_EXTRA=
1125    
1126  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1127  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1128  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"
1129    
1130  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1131  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1132  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1133  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1134  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1135  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
1136    
1137  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1138  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 651  EOF Line 1155  EOF
1155    
1156  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1157  gm_local="genmake_local"  gm_local="genmake_local"
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
1158  printf "  getting local config information:  "  printf "  getting local config information:  "
1159  if test -e $gm_local ; then  if test -f $gm_local ; then
1160      echo "using $gm_local"      echo "using $gm_local"
1161      . $gm_local      . $gm_local
1162      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
# Line 667  else Line 1165  else
1165      echo "none found"      echo "none found"
1166  fi  fi
1167    
1168  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1169  #OPTIONS=  #OPTIONS=
1170  #n=0  #n=0
1171  #for i ; do  #for i ; do
# Line 679  fi Line 1177  fi
1177  #done  #done
1178  #parse_options  #parse_options
1179  ac_prev=  ac_prev=
1180  for ac_option ; do  for ac_option in "$@" ; do
1181    
1182      G2ARGS="$G2ARGS \"$ac_option\""      G2ARGS="$G2ARGS \"$ac_option\""
1183    
# Line 775  for ac_option ; do Line 1273  for ac_option ; do
1273  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1274  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1275  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1276                        
1277            -cc | --cc)
1278                ac_prev=CC ;;
1279            -cc=* | --cc=*)
1280                CC=$ac_optarg ;;
1281            
1282          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1283              ac_prev=FC ;;              ac_prev=FC ;;
1284          -fc=* | --fc=*)          -fc=* | --fc=*)
1285              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1286                    
1287            -fs | --fs)
1288                ac_prev=FS ;;
1289            -fs=* | --fs=*)
1290                FS=$ac_optarg ;;
1291            
1292            -fs90 | --fs90)
1293                ac_prev=FS90 ;;
1294            -fs90=* | --fs90=*)
1295                FS90=$ac_optarg ;;
1296            
1297          -ieee | --ieee)          -ieee | --ieee)
1298              IEEE=true ;;              IEEE=true ;;
1299          -noieee | --noieee)          -noieee | --noieee)
1300              IEEE= ;;              IEEE= ;;
1301    
1302            -ts | --ts)
1303                TS=true ;;
1304            -papis | --papis)
1305                PAPIS=true ;;
1306            -pcls | --pcls)
1307                PCLS=true ;;
1308            -foolad | --foolad)
1309                FOOLAD=true ;;
1310            -papi | --papi)
1311                PAPI=true ;;
1312            -pcl | --pcl)
1313                PCL=true ;;
1314            -hpmt | --hpmt)
1315                HPMT=true ;;
1316    
1317            -gsl | --gsl)
1318                GSL=true ;;
1319    
1320            -devel | --devel)
1321                DEVEL=true ;;
1322    
1323          -mpi | --mpi)          -mpi | --mpi)
1324              MPI=true ;;              MPI=true ;;
1325          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
# Line 809  for ac_option ; do Line 1343  for ac_option ; do
1343              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1344          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1345              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1346            
1347            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1348                IGNORE_TIME="-DIGNORE_TIME" ;;
1349    
1350            -es | --es | -embed-source | --embed-source)
1351                EMBED_SRC=t ;;
1352    
1353          -*)          -*)
1354              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 824  for ac_option ; do Line 1364  for ac_option ; do
1364            
1365  done  done
1366    
1367    
1368  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1369      echo      echo
1370      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1371      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1372      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1373      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/devel_HOWTO/"
1374      echo      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1375      echo "  for directions on how to setup and use the new \"genmake2\" input"      echo "WARNING: ignore \"./.genmakerc\" and continue."
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
1376      echo      echo
1377  fi  fi
1378    
1379    #  Find the MITgcm ${ROOTDIR}
1380  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1381      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1382        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1383          ROOTDIR=".."          ROOTDIR=".."
1384      else      else
1385          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
# Line 861  if test ! -d ${ROOTDIR} ; then Line 1403  if test ! -d ${ROOTDIR} ; then
1403      exit 1      exit 1
1404  fi  fi
1405    
1406    #  Find the MITgcm ${THISVER}
1407    version_file="${ROOTDIR}/doc/tag-index"
1408    if test -f $version_file ; then
1409        THISVER=`grep '^checkpoint' $version_file | head -1`
1410    #-  remove ./BUILD_INFO.h file if older than version_file
1411        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1412            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1413            rm -f ./BUILD_INFO.h
1414        fi
1415    fi
1416    
1417    if test "x$MAKEFILE" = x ; then
1418        MAKEFILE="Makefile"
1419    fi
1420    
1421  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1422  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1423      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 917  if test "x${AD_OPTFILE}" != xNONE ; then Line 1474  if test "x${AD_OPTFILE}" != xNONE ; then
1474      fi      fi
1475  fi  fi
1476    
1477  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #====================================================================
1478    #  Set default values if not set by the optfile
1479    #
1480    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1481  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1482  if test ! "x$BASH" = x ; then  if test ! "x$BASH" = x ; then
1483      # add a trailing space so that it works within the Makefile syntax (see below)      # add a trailing space so that it works within the Makefile syntax (see below)
# Line 933  Error: no Fortran compiler: please speci Line 1493  Error: no Fortran compiler: please speci
1493  EOF  EOF
1494      exit 1      exit 1
1495  fi  fi
1496    if test "x$CC" = x ; then
1497        CC=cc
1498    #     cat <<EOF 1>&2
1499    # Error: no C compiler: please specify using one of the following:
1500    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1501    #   2) the "-cc=XXX" command-line option
1502    #   3) the "./genmake_local" file
1503    # EOF
1504    #     exit 1
1505    fi
1506  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1507      LINK=$FC      LINK=$FC
1508  fi  fi
# Line 943  if test "x$CPP" = x ; then Line 1513  if test "x$CPP" = x ; then
1513      CPP=cpp      CPP=cpp
1514  fi  fi
1515  #EH3 === UGLY ===  #EH3 === UGLY ===
1516  #  The following an ugly little hack to check for $CPP in /lib/ and it  #  The following is an ugly little hack to check for $CPP in /lib/ and
1517  #  should eventually be replaced with a more general function that  #  it should eventually be replaced with a more general function that
1518  #  searches a combo of the user's path and a list of "usual suspects"  #  searches a combo of the user's path and a list of "usual suspects"
1519  #  to find the correct location for binaries such as $CPP.  #  to find the correct location for binaries such as $CPP.
1520  for i in " " "/lib/" ; do  for i in " " "/lib/" ; do
# Line 967  EOF Line 1537  EOF
1537  else  else
1538      rm -f test_cpp      rm -f test_cpp
1539  fi  fi
1540  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
     MAKEDEPEND=makedepend  
 fi  
1541  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1542      LN="ln -s"      LN="ln -s"
1543  fi  fi
# Line 985  Error: The command "ln -s" failed -- ple Line 1553  Error: The command "ln -s" failed -- ple
1553  EOF  EOF
1554      exit 1      exit 1
1555  fi  fi
1556    test -L genmake_tlink > /dev/null 2>&1
1557    RETVAL=$?
1558    if test "x$RETVAL" = x0 ; then
1559        HAVE_TEST_L=t
1560    fi
1561  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1562    
1563    #  Check for broken *.F/*.f handling and fix if possible
1564    check_for_broken_Ff
1565    
1566  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1567        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1568        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1569  fi  fi
1570    
1571    if test ! "x$TS" = x ; then
1572          echo "  Turning on timing per timestep"
1573          if test ! "x$FOOLAD" = x ; then
1574                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1575          else
1576                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1577          fi
1578          PACKAGES="$PACKAGES showflops"
1579    fi
1580    if test ! "x$PAPIS" = x ; then
1581          echo "  Turning on PAPI flop summary per timestep"
1582          echo "  Please make sure PAPIINC, PAPILIB are defined"
1583          if test ! "x$FOOLAD" = x ; then
1584                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1585          else
1586                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1587          fi
1588          INCLUDES="$INCLUDES $PAPIINC"
1589          LIBS="$LIBS $PAPILIB"
1590          PACKAGES="$PACKAGES showflops"
1591    fi
1592    if test ! "x$PCLS" = x ; then
1593          echo "  Turning on PCL counter summary per timestep"
1594          echo "  Please make sure PCLINC, PCLLIB are defined"
1595          if test ! "x$FOOLAD" = x ; then
1596                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1597          else
1598                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1599          fi
1600          INCLUDES="$INCLUDES $PCLINC"
1601          LIBS="$LIBS $PCLLIB"
1602          PACKAGES="$PACKAGES showflops"
1603    fi
1604    if test ! "x$PAPI" = x ; then
1605          if test ! "x$PAPIS" = x ; then
1606              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1607              echo "  Sticking with PAPI flop summary per timestep!"
1608          else
1609              echo "  Turning on performance analysis with PAPI"
1610              echo "  Please make sure PAPIINC, PAPILIB are defined"
1611              DEFINES="$DEFINES -DUSE_PAPI"
1612              INCLUDES="$INCLUDES $PAPIINC"
1613              LIBS="$LIBS $PAPILIB"
1614          fi
1615    fi
1616    if test ! "x$PCL" = x ; then
1617          if test ! "x$PCLS" = x ; then
1618              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1619              echo "  Sticking with PCL flop summary per timestep!"
1620          else
1621              echo "  Turning on performance analysis with PCL"
1622              echo "  Please make sure PCLINC, PCLLIB are defined"
1623              DEFINES="$DEFINES -DUSE_PCL"
1624              INCLUDES="$INCLUDES $PCLINC"
1625              LIBS="$LIBS $PCLLIB"
1626          fi
1627    fi
1628    if test ! "x$HPMT" = x ; then
1629          if test ! "x$PAPI" = x ; then
1630              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1631              echo "  Sticking with PAPI!"
1632          else if test ! "x$PCL" = x ; then
1633              echo "  PCL and the HPM Toolkit cannot co-exist!"
1634              echo "  Sticking with PCL!"
1635          else
1636              echo "  Turning on performance analysis with the HPM Toolkit"
1637              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1638              DEFINES="$DEFINES -DUSE_LIBHPM"
1639              INCLUDES="$INCLUDES $HPMTINC"
1640              LIBS="$LIBS $HPMTLIB"
1641          fi
1642          fi
1643    fi
1644    if test ! "x$GSL" = x ; then
1645          echo "  Turning on use of GSL to control floating point calculations"
1646          echo "  Please make sure GSLINC, GSLLIB are defined"
1647          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1648          INCLUDES="$INCLUDES $GSLINC"
1649          LIBS="$LIBS $GSLLIB"
1650    fi
1651    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1652    if test ! "x$USE_EXTENDED_SRC" = x ; then
1653          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1654          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1655    fi
1656    
1657  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1658  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1659  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1660        program hello        program hello
1661        call system('echo hi')        call system('echo hi')
1662        end        end
1663  EOF  EOF
1664  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1665  RETVAL=$?  RETVAL=$?
1666  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1667      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 1012  fi Line 1674  fi
1674  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1675    
1676  printf "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1677  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1678        program hello        program hello
1679        CHARACTER(128) string        CHARACTER*(128) string
1680        string = ' '        string = ' '
1681        call fdate( string )        call fdate( string )
1682        print *, string        print *, string
1683        end        end
1684  EOF  EOF
1685  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1686  RETVAL=$?  RETVAL=$?
1687  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1688      HAVE_FDATE=t      HAVE_FDATE=t
# Line 1032  else Line 1694  else
1694  fi  fi
1695  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1696    
1697    printf "  Do we have the etime() command using $FC...  "
1698    cat > genmake_tcomp.$FS <<EOF
1699          program hello
1700          REAL*4 ACTUAL, TARRAY(2)
1701          EXTERNAL ETIME
1702          REAL*4 ETIME
1703          actual = etime( tarray )
1704          print *, tarray
1705          end
1706    EOF
1707    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1708    RETVAL=$?
1709    if test "x$RETVAL" = x0 ; then
1710        HAVE_ETIME=t
1711        DEFINES="$DEFINES -DHAVE_ETIME"
1712        echo "yes"
1713    else
1714        HAVE_ETIME=
1715        echo "no"
1716    fi
1717    rm -f genmake_tcomp*
1718    
1719  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1720  check_HAVE_CLOC  check_HAVE_CLOC
1721  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1722      echo "yes"      echo "yes"
1723  else  else
1724      echo "no"      echo "no"
1725        if test "x$EMBED_SRC" = xt ; then
1726            echo "    WARNING: you requested file embedding but it has"
1727            echo "      been disabled since C code cannot be called"
1728            EMBED_SRC=
1729        fi
1730    fi
1731    rm -f genmake_t*
1732    
1733    printf "  Can we unlimit the stack size using $FC...  "
1734    check_HAVE_SETRLSTK
1735    if test "x$HAVE_SETRLSTK" = xt ; then
1736        echo "yes"
1737    else
1738        echo "no"
1739    fi
1740    rm -f genmake_t*
1741    
1742    printf "  Can we register a signal handler using $FC...  "
1743    check_HAVE_SIGREG
1744    if test "x$HAVE_SIGREG" = xt ; then
1745        echo "yes"
1746    else
1747        echo "no"
1748    fi
1749    rm -f genmake_t*
1750    
1751    printf "  Can we use stat() through C calls...  "
1752    check_HAVE_STAT
1753    if test "x$HAVE_STAT" != x ; then
1754        echo "yes"
1755    else
1756        echo "no"
1757  fi  fi
1758  rm -f genmake_t*  rm -f genmake_t*
1759    
# Line 1048  if test "x$HAVE_NETCDF" != x ; then Line 1764  if test "x$HAVE_NETCDF" != x ; then
1764  else  else
1765      echo "no"      echo "no"
1766  fi  fi
1767    DEFINES="$DEFINES $IGNORE_TIME"
1768    
1769    if test "x$EMBED_SRC" = xt ; then
1770        build_embed_encode
1771    fi
1772    if test "x$EMBED_SRC" = xt ; then
1773        ENABLE="$ENABLE embed_files"
1774    fi
1775    
1776    
1777  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1778  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1779    MPI_LNKF=
1780  for d in $MODS ; do  for d in $MODS ; do
1781      if test ! -d $d ; then      if test ! -d $d ; then
1782          echo          echo
1783          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1784          exit 1          exit 1
1785      else      else
1786          printf " $d"          printf "$d "
1787          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1788          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1789            #-------------------------------------------------------
1790            # Put special links so that MPI specific files are used
1791            MPI_FILES=`(cd $d ; find . -name "*_mpi" -print)`
1792            for i in $MPI_FILES ; do
1793              ii=`echo $i | sed 's:^\./::'`
1794              name=`echo $ii | sed 's:_mpi::' `
1795              if test "x$MPI" = x ; then
1796              # NO: We undo an _mpi symbolically linked file
1797                if test -L $name ; then
1798                  cmp $name "$d/$ii" > /dev/null 2>&1
1799                  RETVAL=$?
1800                  if test "x$RETVAL" = x0 ; then
1801                    printf "Un-linking $name ; "
1802                    rm -f $name
1803                  fi
1804                fi
1805              else
1806              # YES: We symbolically link this file (with conditions if already there)
1807                if test -L $name ; then
1808                  cmp $d/$ii $name > /dev/null 2>&1
1809                  RETVAL=$?
1810                  xx=`echo $MPI_LNKF | grep -c $name`
1811                  if test "x$RETVAL" != x0 -a $xx == 0 ; then
1812                  # remove sym-link if different and has not just been linked
1813                    printf "Un-link + "
1814                    rm -f $name
1815                  fi
1816                  if test "x$RETVAL" = x0 ; then
1817                  # if identical, keep sym-link and keep record of it
1818                    MPI_LNKF="$MPI_LNKF $name"
1819                  fi
1820                fi
1821                if ! test -f $name ; then
1822                  # make sym-link and keep record of it
1823                    printf "Linking $ii to $name ; "
1824                    ln -s $d/$ii $name
1825                    MPI_LNKF="$MPI_LNKF $name"
1826                fi
1827              fi
1828            done
1829            #-------------------------------------------------------
1830      fi      fi
1831  done  done
1832  echo  echo
1833    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1834  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1835      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1836  fi  fi
1837    
1838  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1839      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1840        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1841          EXEDIR=../exe          EXEDIR=../exe
1842      else      else
1843          EXEDIR=.          EXEDIR=.
# Line 1092  if test ! -d ${TOOLSDIR} ; then Line 1856  if test ! -d ${TOOLSDIR} ; then
1856      exit 1      exit 1
1857  fi  fi
1858  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1859      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1860        RETVAL=$?
1861        if test "x${RETVAL}" = x0 ; then
1862            S64='$(TOOLSDIR)/set64bitConst.sh'
1863        else
1864            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1865            RETVAL=$?
1866            if test "x${RETVAL}" = x0 ; then
1867                S64='$(TOOLSDIR)/set64bitConst.csh'
1868            else
1869                cat <<EOF
1870    
1871    ERROR: neither of the two default scripts:
1872    
1873        ${TOOLSDIR}/set64bitConst.sh
1874        ${TOOLSDIR}/set64bitConst.csh
1875    
1876      are working so please check paths or specify (with \$S64) a
1877      working version of this script.
1878    
1879    EOF
1880                exit 1
1881            fi
1882        fi
1883  fi  fi
1884  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1885    
# Line 1114  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1901  if test -r $ROOTDIR"/eesupp/src/Makefile
1901      fi      fi
1902  fi  fi
1903    
1904  #same for exch2  #same for pkg/exch2 and pkg/regrid
1905  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
1906      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1907      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
1908      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1
1909      if test "x${RETVAL}" = x0 ; then          RETVAL=$?
1910          rm -f make_exch2.errors          if test "x${RETVAL}" = x0 ; then
1911      else              rm -f make_${pdir}.errors
1912          echo "Error: problem encountered while building source files in exch2:"          else
1913          cat make_exch2.errors 1>&2              echo "Error: problem encountered while building source files in pkg/${pdir}:"
1914          exit 1              cat make_${pdir}.errors 1>&2
1915                exit 1
1916            fi
1917      fi      fi
1918  fi  done
1919    
1920  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1921  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
# Line 1191  else Line 1980  else
1980              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1981          done          done
1982          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1983          while ! expand_pkg_groups; do echo > /dev/null; done          RET=1
1984            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1985          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1986      fi      fi
1987  fi  fi
# Line 1236  done Line 2026  done
2026  rm -f ./.tmp_pack  rm -f ./.tmp_pack
2027  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
2028    
2029    #  Check for package MNC: if NetCDF is available, then build the MNC
2030    #  template files ; otherwise, delete mnc from the list of packages.
2031    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
2032    RETVAL=$?
2033    if test "x$RETVAL" = x0 ; then
2034        if test "x$HAVE_NETCDF" != xt ; then
2035            cat <<EOF
2036    
2037    *********************************************************************
2038    WARNING: the "mnc" package was enabled but tests failed to compile
2039      NetCDF applications.  Please check that:
2040    
2041      1) NetCDF is correctly installed for this compiler and
2042      2) the LIBS variable (within the "optfile") specifies the correct
2043           NetCDF library to link against.
2044    
2045      Due to this failure, the "mnc" package is now DISABLED.
2046    *********************************************************************
2047    
2048    EOF
2049            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2050            DISABLE="$DISABLE mnc"
2051        else
2052            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2053            RETVAL=$?
2054            if test "x${RETVAL}" = x0 ; then
2055                rm -f make_mnc.errors
2056            else
2057                echo "Error: problem encountered while building source files in pkg/mnc:"
2058                cat make_mnc.errors 1>&2
2059                exit 1
2060            fi
2061        fi
2062    fi
2063    
2064    #  Check for package PROFILES: if NetCDF is not available,
2065    #  then delete profiles from the list of available packages.
2066    echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1
2067    RETVAL=$?
2068    if test "x$RETVAL" = x0 ; then
2069        if test "x$HAVE_NETCDF" != xt ; then
2070            cat <<EOF
2071    
2072    *********************************************************************
2073    WARNING: the "profiles" package was enabled but tests failed to
2074      compile NetCDF applications.  Please check that:
2075    
2076      1) NetCDF is correctly installed for this compiler and
2077      2) the LIBS variable (within the "optfile") specifies the correct
2078           NetCDF library to link against.
2079    
2080      Due to this failure, the "profiles" package is now DISABLED.
2081    *********************************************************************
2082    
2083    EOF
2084            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2085            DISABLE="$DISABLE profiles"
2086        fi
2087    fi
2088    
2089  echo "  applying package dependency rules"  echo "  applying package dependency rules"
2090  ck=  ck=
2091  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
2092      i=0      i=0
2093      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2094      rtot=$nname      rtot=$nname
2095      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2096    
2097          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2098          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1276  while test "x$ck" != xtt ; do Line 2126  while test "x$ck" != xtt ; do
2126    
2127          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2128          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2129                #echo "   " $pname ": need to add :" $dname
2130              in_dis="f"              in_dis="f"
2131              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2132                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1300  while test "x$ck" != xtt ; do Line 2151  while test "x$ck" != xtt ; do
2151              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2152              exit 1              exit 1
2153          fi          fi
2154          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2155            #i=$(( $i + 1 ))
2156      done      done
2157      ck=$ck"t"      ck=$ck"t"
2158  done  done
# Line 1319  for i in $PACKAGES ; do Line 2171  for i in $PACKAGES ; do
2171      fi      fi
2172  done  done
2173    
 #  Build MNC templates and check for ability to build and use NetCDF  
 echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  
 RETVAL=$?  
 if test "x$RETVAL" = x0 ; then  
     ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         rm -f make_mnc.errors  
     else  
         echo "Error: problem encountered while building source files in pkg/mnc:"  
         cat make_mnc.errors 1>&2  
         exit 1  
     fi  
     if test "x$HAVE_NETCDF" != xt ; then  
         cat <<EOF  
   
 WARNING: the "mnc" package has been enabled but tests failed to  
   compile and/or execute NetCDF applications.  Please check that:  
   
   1) NetCDF is installed for your compiler and  
   2) the LIBS variable (within the 'optfile") specifies the correct  
        NetCDF library to link against.  
     
 EOF  
     fi  
 fi  
   
2174  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2175  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2176  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
# Line 1365  for n in $names ; do Line 2190  for n in $names ; do
2190              fi              fi
2191          done          done
2192          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2193              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2194              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2195          fi          fi
2196      fi      fi
2197  done  done
2198  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2199  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2200      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2201      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2202  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2203    
# Line 1446  fi Line 2271  fi
2271    
2272  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2273  #  compiler.  #  compiler.
2274  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2275      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2276  fi  fi
2277  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2278  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2279      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2280      for j in $list_files ; do      for j in $list_files ; do
2281          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2282      done      done
2283  done  done
2284    if test ! "x"$FS = "x.f" ; then
2285        cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2286        mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2287    fi
2288    
2289  echo  echo
2290  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2291  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2292  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2293      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2294          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2295      fi      fi
2296  done  done
2297    
2298    if test ! "x$DIVA" = x ; then
2299        echo "  Creating the pseudo-MPI include directory"
2300        INCLUDES="-I./mpi_headers $INCLUDES"
2301        rm -rf ./mpi_headers
2302        mkdir -p ./mpi_headers
2303    
2304        if test "x$MPIINCLUDEDIR" = x ; then
2305            if test "x$MPIHOME" = x ; then
2306                MPIHOME='/usr'
2307            fi
2308            MPIINCLUDEDIR='$MPIHOME/include'
2309        fi
2310        
2311        if test -r $MPIINCLUDEDIR/mpif.h ; then
2312            for i in $MPI_HEADER_FILES; do
2313                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2314            done
2315    
2316            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2317        else
2318            echo " We cannot create a copy of mpif.h!"
2319    #       exit -1
2320        fi
2321    fi
2322    
2323  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2324  rm -rf .links.tmp  rm -rf .links.tmp
2325  mkdir .links.tmp  mkdir .links.tmp
2326    touch .links.tmp/foo
2327    if test ! -r ".links.tmp/foo" ; then
2328        echo
2329        echo "ERROR : something is wrong with your directory permissions or"
2330        echo "   your user file-creation mask (\"umask\") since creating a"
2331        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2332        echo "   not working.  Please try setting your umask to something"
2333        echo "   sane such as:"
2334        echo
2335        echo "      umask 0002"
2336        echo
2337        echo "   and please verify that you have the proper permissions for"
2338        echo "   creating sub-directories and then reading files created"
2339        echo "   within them."
2340        echo
2341        exit 1
2342    fi
2343    rm -f .links.tmp/foo
2344    
2345    if test "x$OPENAD" != x ; then
2346        OAD_DONT_COMPILE="/dev/null"
2347        OAD_DONT_TRANSFORM="/dev/null"
2348        OAD_KEEP_ORIGINAL="/dev/null"
2349        OAD_CB2M_FILES="/dev/null"
2350        echo "  looking for dontCompile file:  "
2351        for i in "." $MODS ; do
2352            if test -r $i"/dontCompile" ; then
2353                OAD_DONT_COMPILE=$i"/dontCompile"
2354                echo "     found $OAD_DONT_COMPILE"
2355                break
2356            fi
2357        done
2358        echo "  looking for dontTransform file:  "
2359        for i in "." $MODS ; do
2360            if test -r $i"/dontTransform" ; then
2361                OAD_DONT_TRANSFORM=$i"/dontTransform"
2362                echo "     found $OAD_DONT_TRANSFORM"
2363                break
2364            fi
2365        done
2366        echo "  looking for keepOriginal file:  "
2367        for i in "." $MODS ; do
2368            if test -r $i"/keepOriginal" ; then
2369                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2370                echo "     found $OAD_KEEP_ORIGINAL"
2371                break
2372            fi
2373        done
2374        echo "  looking for cb2mFiles:  "
2375        for i in "." $MODS ; do
2376            if test -r $i"/cb2mFiles" ; then
2377                OAD_CB2M_FILES=$i"/cb2mFiles"
2378                echo "     found $OAD_CB2M_FILES"
2379                break
2380            fi
2381        done
2382        echo "   OpenAD exceptions:  "
2383    fi
2384    
2385  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2386  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2387  printf 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2388  printf 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2389  printf 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2390  printf 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2391  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2392    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2393  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2394  for d in $alldirs ; do  for d in $alldirs ; do
2395      deplist=      deplist=
2396      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2397      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2398        if test "x$OPENAD" != x ; then
2399            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2400        fi
2401      for sf in $sfiles ; do      for sf in $sfiles ; do
2402          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2403              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2404                    ignore_f=f
2405                  case $d/$sf in                  case $d/$sf in
2406                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2407                            ignore_f=t
2408                          ;;                          ;;
2409                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2410                            ignore_f=t
2411                          ;;                          ;;
2412                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2413                            ignore_f=t
2414                            ;;
2415                      ./BUILD_INFO.h)
2416                            ignore_f=t
2417                            ;;
2418                      ./EMBEDDED_FILES.h)
2419                            ignore_f=t
2420                          ;;                          ;;
2421                    *)                    *)
2422                          touch .links.tmp/$sf                          #  For the local directory *ONLY*,
2423                          deplist="$deplist $sf"                          #  ignore all soft-links
2424                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2425                                ignore_f=t
2426                            else
2427                                touch .links.tmp/$sf
2428                                deplist="$deplist $sf"
2429                            fi
2430                          ;;                          ;;
2431                  esac                  esac
2432                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  if test "x$ignore_f" = xf ; then
2433                  case $extn in                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2434                      F)                      case $extn in
2435                          echo    " \\"  >> srclist.inc                        F)
2436                          printf " $sf" >> srclist.inc                          echo    " \\"  >> F77srclist.tmp
2437                            printf " $sf" >> F77srclist.tmp
2438                            if test "x$OPENAD" != x ; then
2439                                basename=${sf%%.F}
2440                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2441                                if test -z "$isAD" ; then
2442                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2443                                    if test -z "$toBeIgnored" ; then
2444                                        echo    " \\"  >> nonADF77srclist.tmp
2445                                        printf " $sf" >> nonADF77srclist.tmp
2446                                    else
2447                                        echo "    not to be compiled   :  $sf"
2448                                    fi
2449                                else # file is initially listed as an AD file we want to exclude it
2450                                     # or we want to retain the untransformed version
2451                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2452                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2453                                    if test -n "$notToBeTransformed"; then
2454                                        echo "    not to be transformed:  $sf"
2455                                    fi
2456                                    if test -n "$untransformedVersionToBeKept" ; then
2457                                        echo "    original to be kept  :  $sf"
2458                                    fi    
2459                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2460                                        echo    " \\"  >> nonADF77srclist.tmp
2461                                        printf " $sf" >> nonADF77srclist.tmp
2462                                    fi
2463                                fi
2464                            fi
2465                          ;;                          ;;
2466                      F90)                      F90)
2467                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2468                          printf " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2469                          ;;                          ;;
2470                      c)                      c)
2471                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2472                          printf " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2473                          ;;                          ;;
2474                      h)                      h)
2475                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2476                          printf " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2477                          ;;                          ;;
2478                      flow)                      flow)
2479                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.tmp
2480                          printf " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.tmp
2481                          ;;                          ;;
2482                  esac                     esac
2483                    fi
2484              fi              fi
2485          fi          fi
2486      done      done
2487      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2488          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2489            echo "" >> srclinks.tmp
2490          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2491          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2492          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2493    # This may happen when make thinks that a header file has to be "remade"
2494    # because a module it depends on has changed.  In this case we do nothing.
2495            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2496          fi
2497      fi      fi
2498  done  done
2499  rm -rf .links.tmp  rm -rf .links.tmp
2500  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2501  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2502  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2503  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2504  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2505    echo "" >> ad_flow_files.tmp
2506    
2507  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2508      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
2509  fi  fi
2510  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1550  echo "#    $THISDATE" >> $MAKEFILE Line 2515  echo "#    $THISDATE" >> $MAKEFILE
2515  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2516  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
2517  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2518  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2519    
2520  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2521  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
# Line 1596  ENABLED_PACKAGES = ${ENABLED_PACKAGES} Line 2561  ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2561  DISABLED_PACKAGES = ${DISABLED_PACKAGES}  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2562    
2563  # These files are created by Makefile  # These files are created by Makefile
2564  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2565  EOF  EOF
2566    
2567  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2568        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2569    else
2570        echo "EMBEDDED_FILES = " >>$MAKEFILE
2571    fi
2572    
2573    #  Note: figure out some way to add Hyades JAM libraries here
2574  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2575  # Unix ln (link)  # Unix ln (link)
2576  LN = ${LN}  LN = ${LN}
# Line 1615  KPP = ${KPP} Line 2584  KPP = ${KPP}
2584  FC = ${FC}  FC = ${FC}
2585  # Fortran compiler  # Fortran compiler
2586  F90C = ${F90C}  F90C = ${F90C}
2587    # C compiler
2588    CC = ${CC}
2589  # Link editor  # Link editor
2590  LINK = ${LINK} ${LDADD}  LINK = ${LINK} ${LDADD}
2591    
# Line 1626  INCLUDES = ${INCLUDES} Line 2597  INCLUDES = ${INCLUDES}
2597  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2598  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2599  # Optim./debug for FC  # Optim./debug for FC
2600  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2601  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2602  # Optim./debug for FC  # Optim./debug for FC
2603  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2604  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2605    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2606  # Flags for CC  # Flags for CC
2607  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2608  # Files that should not be optimized  # Files that should not be optimized
2609  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2610  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2611  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2612  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2613  # Name of the Mekfile  # Name of the Mekfile
2614  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2615    
2616  EOF  EOF
2617    
2618  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2619  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2620  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2621  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2622  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2623  echo               >> $MAKEFILE  cat ad_flow_files.tmp   >> $MAKEFILE
 echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  
 echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  
 echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2624    
2625  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
 rm -f ad_flow_files.inc  
2626    
2627  cat >>$MAKEFILE <<EOF  echo >> $MAKEFILE
2628    
2629  .SUFFIXES:  # add definitions for preprocessed sources
2630  .SUFFIXES: .o .f .p .F .c .F90 .f90  # and note that not all systems allow case sensitive extensions
2631    # hence the $FS and $FS90 here.
2632    # for fixed format f90 files we use ff90 or FF90 resp
2633    # but these are not expected to be the original source files
2634    
2635    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2636    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2637    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2638    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2639    echo >> $MAKEFILE
2640    echo '.SUFFIXES:' >> $MAKEFILE
2641    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2642    
2643    cat >>$MAKEFILE <<EOF
2644    
2645  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2646  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2647          @echo Creating \$@ ...          @echo Creating \$@ ...
2648          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2649  depend:  depend:
2650          @make links          @make links
2651          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2652          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2653          -rm -f makedepend.out          -rm -f makedepend.out
2654    
2655  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  lib: libmitgcmuv.a
2656    
2657    libmitgcmuv.a: \$(OBJFILES)
2658            ar rcv libmitgcmuv.a \$(OBJFILES)
2659            ar d   libmitgcmuv.a main.o
2660    
2661  small_f: \$(F77FILES) \$(F90FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2662    
2663    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2664    
2665  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2666          @printf 'running ... '          @printf 'running ... '
2667          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2668    
2669  clean:  clean:
2670          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2671            -rm -rf *.o
2672            -rm -rf *.$FS *.flowdir
2673            -rm -rf *.f$FS90 *_mod.h *_mod.F90 *.FF90 *.mod-whirl ad_input*
2674            -rm -rf temp.sed
2675  Clean:  Clean:
2676          @make clean          @make clean
2677          @make cleanlinks          @make cleanlinks
2678          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES)
2679          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log f90mkdepend.log *.bak
2680            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2681  CLEAN:  CLEAN:
2682          @make Clean          @make Clean
2683          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2684          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2685          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2686          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2687            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2688            -rm -rf mnc_test_*
2689    
2690  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2691  makefile:  makefile:
# Line 1699  makefile: Line 2693  makefile:
2693  cleanlinks:  cleanlinks:
2694          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2695    
2696  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2697  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2698          @echo Creating \$@ ...          @echo Creating \$@ ...
2699          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
# Line 1710  FC_NAMEMANGLE.h: Line 2704  FC_NAMEMANGLE.h:
2704          @echo Creating \$@ ...          @echo Creating \$@ ...
2705          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
2706    
2707  # The normal chain of rules is (  .F - .f - .o  )  BUILD_INFO.h:
2708  .F.f:          @echo Creating \$@ ...
2709    EOF
2710    
2711    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2712    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2713    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2714    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2715    
2716    if test "x$EMBED_SRC" = xt ; then
2717        cat >>$MAKEFILE <<EOF
2718    
2719    decode_files.o : EMBEDDED_FILES.h
2720    
2721    ##  \$(F77_PP_SRC_FILES)
2722    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2723            @echo Creating \$@ ...
2724            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2725            -rm -f all_fF.tar.gz
2726            -gzip all_fF.tar
2727    
2728    EMBEDDED_FILES.h : all_fF.tar.gz
2729            @echo Creating \$@ ...
2730            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2731    
2732    EOF
2733    fi
2734    
2735    cat >>$MAKEFILE <<EOF
2736    
2737    # The normal chain of rules is (  .F - .$FS - .o  )
2738    
2739    ## This nullifies any default implicit rules concerning these two file types:
2740    ## %.o : %.F
2741    
2742    .F.$FS:
2743          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2744  .f.o:  .$FS.o:
2745          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2746  .F90.f90:  .F90.$FS90:
2747          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2748  .f90.o:  .FF90.f$FS90:
2749            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2750    .$FS90.o:
2751          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2752    .f$FS90.o:
2753            cp \$< \$(basename  \$<).f90
2754            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2755  .c.o:  .c.o:
2756          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2757    .flow.flowdir:
2758            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2759    
2760  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2761  .F.p:  .F.p:
2762          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2763  .p.f:  .p.$FS:
2764          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2765    
2766    EOF
2767    
2768  #=========================================  #=========================================
2769  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2770    #===  for TAMC/TAF  ======================
2771    
2772    if test "x$OPENAD" == x ; then
2773    
2774    cat >>$MAKEFILE <<EOF
2775    
2776  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2777  TAF            = ${TAF}  TAF            = ${TAF}
# Line 1744  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2786  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2786  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2787  for i in $ad_vars ; do  for i in $ad_vars ; do
2788      name=$i      name=$i
2789      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2790      eval $t1      eval $t1
2791      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2792      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2793  done  done
2794    
2795  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2796  echo >> $MAKEFILE  echo >> $MAKEFILE
2797  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2798  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2799  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2800      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2801      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2802  done  done
2803  echo >> $MAKEFILE  echo >> $MAKEFILE
2804  rm -f ad_files  rm -f adSrcFiles.tmp
2805    
2806  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2807    
2808  # ... AD ...  # ... AD ...
2809  adall: ad_taf  adall: \$(EXE_AD)
2810  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
2811  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2812    
2813  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2814          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2815          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2816          -rm -f ad_config.template          -rm -f ad_config.template
2817          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2818          @make \$(AD_FLOW_FILES)          @make \$(FLOFILES)
2819          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(FLOFILES) \$(AD_FILES) > ad_input_code.$FS
2820    
2821  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
2822          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2823          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
2824            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2825    
2826  adtafonly:  adtafonly:
2827          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2828          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
2829            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2830  ad_taf: ad_taf_output.o \$(OBJFILES)  
2831          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2832            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2833  ad_tamc_output.f: ad_input_code.f  
2834          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f  ad_tamc_output.$FS: ad_input_code.$FS
2835          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2836            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2837    
2838  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2839          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2840    
2841    adonlyfwd:
2842            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2843    
2844    adtrick:
2845            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2846    
2847  # ... FTL ...  # ... FTL ...
2848  ftlall: ftl_taf  ftlall: ftl_taf
2849  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
2850  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
2851    
2852  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2853          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2854          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2855          -rm -f ftl_config.template          -rm -f ftl_config.template
2856          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2857          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2858          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2859    
2860  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
2861          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2862          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          ls -l ftl_input_code_ftl.$FS
2863            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2864    
2865  ftltafonly:  ftltafonly:
2866          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2867          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          ls -l ftl_input_code_ftl.$FS
2868            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2869    
2870  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2871          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2872    
2873  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.$FS: ftl_input_code.$FS
2874          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2875          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2876    
2877  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2878          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2879    
2880    
2881  # ... SVD ...  # ... SVD ...
2882  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2883  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2884            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2885    svdall: svd_touch svd_taf
2886    
2887  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
2888          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2889    
2890            @echo "--->>> Only COMPILE svd code! <<<---"
2891            @echo "--->>> Assumes you previously <<<---"
2892            @echo "--->>> did make svdtaf        <<<---"
2893    
2894    svd_touch:
2895            @echo "--->>> Only COMPILE svd code! <<<---"
2896            @echo "--->>> Assumes you previously <<<---"
2897            @echo "--->>> did make svdtaf        <<<---"
2898            touch ad_taf_output.$FS ftl_taf_output.$FS
2899            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2900            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2901            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2902            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2903            -rm -f ftl_config.template
2904    
2905    EOF
2906    
2907    fi
2908    
2909  #=========================================  #===  for OpenAD  ========================
2910    
2911    if test "x$OPENAD" != x ; then
2912    
2913    # ============ begin OpenAD specific section ==============
2914    
2915    cat >>$MAKEFILE <<EOF
2916    
2917    # all the source files linked from the various locations:
2918    ALL_LINKED_FILES= \
2919    \$(F77_SRC_FILES) \
2920    \$(C_SRC_FILES) \
2921    \$(H_SRC_FILES) \
2922    \$(F90_SRC_FILES) \
2923    \$(SPECIAL_FILES)
2924    
2925    ifndef OPENADROOT
2926      \$(error "Error:  environment variable OPENADROOT not defined!")
2927    endif
2928    
2929    ifndef XAIFSCHEMAROOT
2930      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2931    endif
2932    
2933    ifndef XAIFBOOSTERROOT
2934      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2935    endif
2936    
2937    EOF
2938    
2939    echo "  Add the source list for common block to module conversion "
2940    echo >> $MAKEFILE
2941    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2942    for i in `cat ${OAD_CB2M_FILES}` ; do
2943      echo    " \\" >> $MAKEFILE
2944      printf " $i" >> $MAKEFILE
2945    done
2946    echo >> $MAKEFILE
2947    
2948    echo "  Add the source list for AD code generation"
2949    echo >> $MAKEFILE
2950    printf "AD_FILES = " >> $MAKEFILE
2951    for i in `cat ${OAD_CB2M_FILES}` ; do
2952      echo    " \\" >> $MAKEFILE
2953      printf " ${i}_mod.f$FS90" >> $MAKEFILE
2954    done
2955    AD_FILES=`cat adSrcFiles.tmp`
2956    for i in $AD_FILES ; do
2957      basename=${i%%.f}
2958      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
2959      if test -z "$toBeIgnored" ; then
2960        echo    " \\" >> $MAKEFILE
2961        printf " $i" >> $MAKEFILE
2962      fi
2963    done
2964    echo >> $MAKEFILE
2965    rm -f adSrcFiles.tmp
2966    
2967    cat >>$MAKEFILE <<EOF
2968    
2969    adAll: \$(EXE_AD)
2970    .PHONY: adAll
2971    
2972    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
2973    
2974    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
2975    
2976    .PHONY: adDepend
2977    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
2978            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2979            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2980            -rm -f makedepend.out
2981    
2982    OPENAD_SUPPORT_F90_SRC_FILES = \
2983    w2f__types.F90 \
2984    OAD_active.F90 \
2985    OAD_cp.F90 \
2986    OAD_rev.F90 \
2987    OAD_tape.F90        
2988    
2989    OPENAD_SUPPORT_C_SRC_FILES = \
2990    iaddr.c \
2991    timeRatio.c
2992    
2993    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
2994            cat \$^ > \$@
2995    
2996    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
2997            cat \$^ > \$@
2998    
2999    f95_test.out: f95_test_mods.f90 f95_test.f90
3000            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3001            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3002    
3003    AD_OBJ_FILES=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) all_mods.xb.x2w.w2f.pp.o  ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.o \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3004    
3005    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(AD_OBJ_FILES)
3006            @echo Creating \$@ ...
3007            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES) \$(LIBS)
3008    
3009    # makefile debug rule
3010    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3011    .PHONY: openad
3012    
3013    # create the module files
3014    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3015            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3016    
3017    # create the header files
3018    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3019            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3020    
3021    # change everybody else to use the new module files:
3022    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3023            ../OAD_support/cb2mUseModules.bash $< ${MPI}
3024    
3025    # makefile debug rule
3026    small_f: \$(CB2M_F90_PP_SRC_FILES)
3027    .PHONY: small_f
3028    
3029    ad_output.txt: \$(EXE_AD)
3030            @printf 'linking data files ... '
3031            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3032            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3033            @printf 'running ... '
3034            @./\$(EXE_AD) > \$@
3035    
3036    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3037    ad_input_code.f$FS90: ../OAD_support/maxMinDefs.f \$(CB2M_AD_FILES)
3038            cat \$^ > \$@
3039    
3040    # strip all comments and blanks to reduce
3041    # the file size in order to reduce perl's memory requirements
3042    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3043            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3044    
3045    # mfef90 preprocessing
3046    # expand statement functions
3047    # expose mfef90 specific substring handling
3048    # add the w2f__types module
3049    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3050            ./mfef90 -r8 -z -F -N132 \$<
3051            mv \$<.B \$(basename \$<).B
3052            ./whirl2f -openad \$(basename \$<).B
3053            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3054    
3055    # canonicalizer
3056    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3057            ./preProcess.py -H -S \$< -o \$@
3058    
3059    # F -> WHIRL
3060    # note that the canonicalized version cuts off at col 72
3061    # doing this also for string constants which is ok as long
3062    # as we are in fixed mode and cut of exactly there.
3063    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3064    # characters respectively.
3065    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3066            ./mfef90 -r8 -z -F \$<
3067            mv \$<.B \$@
3068    
3069    # WHIRL -> XAIF
3070    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3071            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3072    
3073    # XAIF -> XAIF'
3074    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3075            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3076    
3077    # XAIF' -> WHIRL'
3078    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3079            ./xaif2whirl --debug 1 --structured ad_input_code_sf.w2f.pre.B \$<
3080    
3081    # WHIRL' -> F'
3082    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3083            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3084    
3085    # insert template directives
3086    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3087            ../OAD_support/insertTemplateDir.bash \$< \$@
3088    
3089    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3090    # postprocess F'
3091    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 multi-pp.pl \$(PPEXTRAS:.F=.f)
3092            perl multi-pp.pl -inline=../OAD_support/ad_inline.f \$<
3093            # the postprocessor still gets the name wrong
3094            cat \$<.pp | sed 's/RETURN//' > \$@
3095    
3096    # extract all transformed modules
3097    all_mods.xb.x2w.w2f.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3098            cat \$< | sed -n '/MODULE /,/END MODULE/p' > \$@
3099    
3100    # remove the transformed globals module from the
3101    # transformed ad_input_code file
3102    # and remove for now the duplicate variables
3103    # and fix 2 data statements
3104    ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3105            cat \$< | sed '/MODULE /,/END MODULE/d' | sed '/^      INTEGER(w2f__i4) DOLOOP_UB/d' > \$@
3106    
3107    # setup some links
3108    %.xsd:
3109            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3110    
3111    mfef90:
3112            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3113    
3114    # link the support files:
3115    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3116            \$(LN) ../OAD_support/\$@ .
3117    
3118    whirl2xaif xaif2whirl:
3119            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3120    
3121    %.pl:
3122            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3123    
3124    preProcess.py:
3125            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3126    
3127    whirl2f whirl2f_be:
3128            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3129    
3130    oadDriver:
3131            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3132    
3133    # ============ end OpenAD specific section ==============
3134    
3135  EOF  EOF
3136    
3137    fi
3138    
3139    #=========================================
3140    
3141  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3142      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3143  fi  fi
# Line 1850  for i in $KPPFILES ; do Line 3149  for i in $KPPFILES ; do
3149      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3150          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3151      fi      fi
3152      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3153  done  done
3154    
3155  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1860  for i in $NOOPTFILES ; do Line 3159  for i in $NOOPTFILES ; do
3159      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3160          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3161      fi      fi
3162      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3163      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3164  done  done
3165    

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