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revision 1.1 by edhill, Sat Aug 16 14:01:08 2003 UTC revision 1.184 by utke, Fri Feb 20 21:08:02 2009 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 8  Line 8 
8  #   modified by aja 01/00  #   modified by aja 01/00
9  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
10    
11    # Search for particular CPP #cmds associated with packages
12    # usage: test_for_package_in_cpp_options CPP_file package_name
13    test_for_package_in_cpp_options() {
14        cpp_options=$1
15        pkg=$2
16        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24    }
25    
26    # Search for particular CPP #cmds associated with MPI
27    # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28    test_for_mpi_in_cpp_eeoptions() {
29        cpp_options=$1
30        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38    }
39    
40    # Search for particular string in a file. Return 1 if detected, 0 if not
41    # usage: test_for_string_in_file file string
42    test_for_string_in_file() {
43        file=$1
44        strng=$2
45        grep -i "$strng" $file > /dev/null 2>&1
46        RETVAL=$?
47        if test "x${RETVAL}" = x0 ; then
48            printf "Error: In $file there is an illegal line: "
49            grep -i "$strng" $file
50            exit 99
51        fi
52        return 0
53    }
54    
55    # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
56    # the package list.
57    expand_pkg_groups() {
58        new_packages=
59        PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"
60        if test -r $PKG_GROUPS ; then
61            cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
62            cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
63            matched=0
64            for i in $PACKAGES ; do
65                line=`grep "^ *$i" ./p2.tmp`
66                RETVAL=$?
67                if test "x$RETVAL" = x0 ; then
68                    matched=1
69                    replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
70                    echo "    replacing \"$i\" with: $replace"
71                    new_packages="$new_packages $replace"
72                else
73                    new_packages="$new_packages $i"
74                fi
75            done
76            PACKAGES=$new_packages
77            rm -f ./p[1,2].tmp
78            return $matched
79        else
80            echo "Warning: can't read package groups definition file: $PKG_GROUPS"
81        fi
82    }
83    
84    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
85    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
86    check_for_broken_Ff()  {
87        #  Do we have defaults for $FS and/or $FS90 ?
88        tfs=f
89        tfs9=f90
90        if test "x$FS" != x ; then
91            tfs="$FS"
92        fi
93        if test "x$FS90" != x ; then
94            tfs9="$FS90"
95        fi
96    
97        #  First check the ability to create a *.F/.f pair.
98        cat <<EOF >> genmake_hello.F
99          program hello
100          write(*,*) 'hi'
101          stop
102          end
103    EOF
104        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
105        RETVAL=$?
106        if test "x$RETVAL" != x0 ; then
107            if test "x$FS" = x ; then
108                FS='for'
109                FS90='fr9'
110                check_for_broken_Ff
111            else
112                cat <<EOF 2>&1
113    ERROR: Your file system cannot distinguish between *.F and *.f files
114      (fails the "cp" test) and this program cannot find a suitable
115      replacement extension.  Please try a different build environment or
116      contact the <MITgcm-support@mitgcm.org> list for help.
117    
118    EOF
119                exit -1
120            fi
121            return
122        fi
123        rm -f genmake_hello.*
124    
125        #  Check the ability of ${MAKE} and ${LN} to use the current set
126        #  of extensions.
127        cat <<EOF >> genmake_hello.F
128          program hello
129          write(*,*) 'hi'
130          stop
131          end
132    EOF
133        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
134        cat <<EOF >> $MAKEFILE
135    .SUFFIXES:
136    .SUFFIXES: .$tfs .F
137    .F.$tfs:
138            $LN \$< \$@
139    EOF
140        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
141        RETVAL=$?
142        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
143            if test "x$FS" = x ; then
144                FS='for'
145                FS90='fr9'
146                check_for_broken_Ff
147            else
148                cat <<EOF 2>&1
149    ERROR: Your file system cannot distinguish between *.F and *.f files
150      (fails the "make/ln" test) and this program cannot find a suitable
151      replacement extension.  Please try a different build environment or
152      contact the <MITgcm-support@mitgcm.org> list for help.
153    
154    EOF
155                exit -1
156                return
157            fi
158        fi
159        rm -f genmake_hello.* $MAKEFILE
160        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
161    
162        #  If we make it here, use the extensions
163        FS=$tfs
164        FS90=$tfs9
165        return
166    }
167    
168    
169    look_for_makedepend()  {
170    
171        #  The "original" makedepend is part of the Imake system that is
172        #  most often distributed with XFree86 or with an XFree86 source
173        #  package.  As a result, many machines (eg. generic Linux) do not
174        #  have a system-default "makedepend" available.  For those
175        #  systems, we have two fall-back options:
176        #
177        #    1) a makedepend implementation shipped with the cyrus-imapd
178        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
179        #
180        #    2) a known-buggy xmakedpend shell script
181        #
182        #  So the choices are, in order:
183        #
184        #    1) use the user-specified program
185        #    2) use a system-wide default
186        #    3) locally build and use the cyrus implementation
187        #    4) fall back to the buggy local xmakedpend script
188        #
189        if test "x${MAKEDEPEND}" = x ; then
190            which makedepend > /dev/null 2>&1
191            RV0=$?
192            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
193            #  echo 'MAKEFILE="'$MAKEFILE'"'
194            cat <<EOF >> $MAKEFILE
195    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
196    #
197    #   Some "makedepend" implementations will die if they cannot
198    #   find a Makefile -- so this file is here to gives them an
199    #   empty one to find and parse.
200    EOF
201            cat <<EOF >> genmake_tc.f
202          program test
203          write(*,*) 'test'
204          stop
205          end
206    EOF
207            makedepend genmake_tc.f > /dev/null 2>&1
208            RV1=$?
209            test -f $MAKEFILE  &&  rm -f $MAKEFILE
210            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
211            if test "x${RV0}${RV1}" = x00 ; then
212                MAKEDEPEND=makedepend
213            else
214                echo "    a system-default makedepend was not found."
215                
216                #  Try to build the cyrus implementation
217                build_cyrus_makedepend
218                RETVAL=$?
219                if test "x$RETVAL" != x0 ; then
220                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
221                fi
222                rm -f ./genmake_cy_md
223            fi
224        else
225            #  echo "MAKEDEPEND=${MAKEDEPEND}"
226            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
227            RETVAL=$?
228            if test x"$RETVAL" = x0 ; then
229                build_cyrus_makedepend
230            fi
231        fi
232    }
233    
234    
235    build_cyrus_makedepend()  {
236        rm -f ./genmake_cy_md
237        (
238            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
239                &&  ./configure > /dev/null 2>&1  \
240                &&  make > /dev/null 2>&1
241            if test -x ./makedepend.exe ; then
242                $LN ./makedepend.exe ./makedepend
243            fi
244            ./makedepend ifparser.c > /dev/null 2>&1  \
245                &&  echo "true"
246        ) > ./genmake_cy_md
247        grep true ./genmake_cy_md > /dev/null 2>&1
248        RETVAL=$?
249        rm -f ./genmake_cy_md
250        if test "x$RETVAL" = x0 ; then
251            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
252            return 0
253        else
254            echo "WARNING: unable to build cyrus-imapd-makedepend"
255            return 1
256        fi
257    }
258    
259    
260    build_embed_encode()
261    {
262        printf "  building the embed-encode utility...  "
263        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265                echo
266                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267                echo
268                EMBED_SRC=f
269                return 1
270            fi
271            clist="cc gcc c89 $CC"
272            for ic in $clist ; do
273                comm="$ic -o encode_files encode_files.c"
274                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275                RETVAL=$?
276                if test "x$RETVAL" = x0 ; then
277                    echo "OK"
278                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279                    return 0
280                fi
281            done
282            echo
283            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
284            echo "      so it has been disabled"
285            echo
286            EMBED_SRC=f
287            return 1
288        fi
289        echo "OK"
290        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291    }
292    
293    
294  # Guess possible config options for this host  # Guess possible config options for this host
295  find_possible_configs()  {  find_possible_configs()  {
296    
297      p_PLATFORM=`uname`"-"`uname -m`      tmp1=`uname`"_"`uname -m`
298      echo "The platform appears to be:"      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
299      echo "  "$p_PLATFORM      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
300        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
301      p_LN=      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
302        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
303        PLATFORM=$tmp3
304        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
305        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
306        echo "  The platform appears to be:  $PLATFORM"
307        
308      echo "test" > test      echo "test" > test
309      ln -s ./test link      ln -s ./test link
310      RETVAL=$?      RETVAL=$?
311      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
312          p_LN="ln -s"          LN="ln -s"
313        else
314            echo "Error: \"ln -s\" does not appear to work on this system!"
315            echo "  For help, please contact <MITgcm-support@mitgcm.org>."
316            exit 1
317      fi      fi
318      rm -f test link      rm -f test link
319    
320      p_CPP=`which cpp`      if test "x$CPP" = x ; then
321                CPP="cpp -traditional -P"
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         p_LN="ln -s"  
322      fi      fi
     rm -f test link  
323    
324      # look for possible fortran compilers      look_for_makedepend
325      p_FC=  
326      for c in f77 g77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 ; do      #================================================================
327          which $c > /dev/null 2>&1      #  look for possible C compilers
328        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329        p_CC=
330        for c in $tmp ; do
331            rm -f ./genmake_hello.c  ./genmake_hello
332            cat >> genmake_hello.c << EOF
333    #include <stdio.h>
334    int main(int argc, char **argv) {
335      printf("Hello!\n");
336      return 0;
337    }
338    EOF
339            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
340          RETVAL=$?          RETVAL=$?
341          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
342              p_FC="$p_FC $c"              p_CC="$p_CC $c"
343          fi          fi
344      done      done
345      echo "Possible FORTRAN compilers appear to be:  "      rm -f ./genmake_hello.c ./genmake_hello
346      if test "x${p_FC}" = x ; then      if test "x${p_CC}" = x ; then
347          echo "  None found!!!"          cat 1>&2 <<EOF
348    
349    Error: No C compilers were found in your path.  Please specify one using:
350    
351        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
352        2) the CC or MITGCM_CC environment variables.
353    
354    EOF
355            exit 1
356      else      else
357          echo "  "$p_FC          echo "  The possible C compilers found in your path are:"
358            echo "   "$p_CC
359            if test "x$CC" = x ; then
360                CC=`echo $p_CC | $AWK '{print $1}'`
361                echo "  Setting C compiler to: "$CC
362            fi
363      fi      fi
364    
365      # look for possible MPI libraries      #================================================================
366      mpi_libs=      #  look for possible FORTRAN compilers
367      mpi_fort=`which mpif77 2>/dev/null`      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368      RETVAL=$?      p_FC=
369      if test "x${RETVAL}" = x0 ; then      for c in $tmp ; do
370          cat >>test.f <<EOF          rm -f ./hello.f ./hello
371        PROGRAM HELLO          cat >> hello.f <<EOF
372        DO 10, I=1,10        program hello
373        PRINT *,'Hello World'        do i=1,3
374     10 CONTINUE          print *, 'hello world : ', i
375        STOP        enddo
376        END        end
377  EOF  EOF
378          eval "$mpi_fort -showme test.f > out"          $c -o hello hello.f > /dev/null 2>&1
379          RETVAL=$?          RETVAL=$?
380          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
381              a=`cat out`              p_FC="$p_FC $c"
             for i in $a ; do  
                 case $i in  
                     -*)  
                         mpi_libs="$mpi_libs $i" ;;  
                 esac  
             done  
             echo "The MPI libs appear to be:"  
             echo "  "$mpi_libs  
382          fi          fi
383          rm -f test.f out      done
384        rm -f ./hello.f ./hello
385        if test "x${p_FC}" = x ; then
386            cat 1>&2 <<EOF
387    
388    Error: No Fortran compilers were found in your path.  Please specify one using:
389    
390        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
391        2) a command-line option (eg. "-fc NAME"), or
392        3) the FC or MITGCM_FC environment variables.
393    
394    EOF
395            exit 1
396        else
397            echo "  The possible FORTRAN compilers found in your path are:"
398            echo "   "$p_FC
399      fi      fi
400    
401  }      #  Use the first of the compilers found in the current PATH
402        #  that has a correctly-named optfile
403        if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
404            for i in $p_FC ; do
405                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
406                if test -r $OPTFILE ; then
407                    echo "  Setting OPTFILE to: "$OPTFILE
408                    break
409                fi
410            done
411        fi
412    
413  parse_options()  {      if test "x$OPTFILE" = x ; then
414            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
415            if test ! -r $OPTFILE ; then
416                 echo "  I looked for the file "$OPTFILE" but did not find it"
417            fi
418        fi
419    #    echo "  The options file:  $p_OF"
420    #    echo "    appears to match so we'll use it."
421    #   for i in $p_FC ; do
422    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
423    #if test -r $p_OF ; then
424    #    OPTFILE=$p_OF
425    #    echo "  The options file:  $p_OF"
426    #    echo "    appears to match so we'll use it."
427    #    break
428    #fi
429    #   done
430        if test "x$OPTFILE" = x ; then
431            cat 1>&2 <<EOF
432    
433    Error: No options file was found in:  $ROOTDIR/tools/build_options/
434      that matches this platform ("$PLATFORM") and the compilers found in
435      your path.  Please specify an "optfile" using:
436    
437      ac_prev=      1) the command line (eg. "-optfile=path/to/OPTFILE"), or
438      for ac_option in "${OPTIONS[@]}" ; do      2) the MITGCM_OF environment variable.
439    
440      If you need help, please contact the developers at <MITgcm-support@mitgcm.org>.
441    
442    EOF
443            exit 1
444        fi
445        
446    #     # look for possible MPI libraries
447    #     mpi_libs=
448    #     mpi_fort=`which mpif77 2>/dev/null`
449    #     RETVAL=$?
450    #     if test "x${RETVAL}" = x0 ; then
451    #       cat >>test.f <<EOF
452    #       PROGRAM HELLO
453    #       DO 10, I=1,10
454    #       PRINT *,'Hello World'
455    #    10 CONTINUE
456    #       STOP
457    #       END
458    # EOF
459    #       eval "$mpi_fort -showme test.f > out"
460    #       RETVAL=$?
461    #       if test "x${RETVAL}" = x0 ; then
462    #           a=`cat out`
463    #           for i in $a ; do
464    #               case $i in
465    #                   -*)
466    #                       mpi_libs="$mpi_libs $i" ;;
467    #               esac
468    #           done
469    #           echo "The MPI libs appear to be:"
470    #           echo "  "$mpi_libs
471    #       fi
472    #       rm -f test.f out
473    #     fi
474    
         # echo "ac_option = :$ac_option:"  
           
         # If the previous option needs an argument, assign it.  
         if test -n "$ac_prev"; then  
             eval "$ac_prev=\$ac_option"  
             ac_prev=  
             continue  
         fi  
           
         ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`  
           
         case $ac_option in  
               
             -help | --help | -h | --h)  
                 usage ;;  
               
             -nooptfile | --nooptfile)  
                 OPTFILE="NONE" ;;  
             -optfile | --optfile | -of | --of)  
                 ac_prev=optfile ;;  
             -optfile=* | --optfile=* | -of=* | --of=*)  
                 OPTFILE=$ac_optarg ;;  
               
             -pdepend | --pdepend)  
                 ac_prev=pdepend ;;  
             -pdepend=* | --pdepend=*)  
                 PDEPEND=$ac_optarg ;;  
               
             -pdefault | --pdefault)  
                 ac_prev=pdefault ;;  
             -pdefault=* | --pdefault=*)  
                 PDEFAULT=$ac_optarg ;;  
               
             -makefile | -ma)  
                 ac_prev=makefile ;;  
             --makefile=* | -ma=*)  
                 MAKEFILE=$ac_optarg ;;  
               
             -platform | --platform | -pl | --pl)  
                 ac_prev=platform ;;  
             -platform=* | --platform=* | -pl=* | --pl=*)  
                 PLATFORM=$ac_optarg ;;  
   
             -rootdir | --rootdir | -rd | --rd)  
                 ac_prev=rootdir ;;  
             -rootdir=* | --rootdir=* | -rd=* | --rd=*)  
                 ROOTDIR=$ac_optarg ;;  
               
             -mods | --mods | -mo | --mo)  
                 ac_prev=mods ;;  
             -mods=* | --mods=* | -mo=* | --mo=*)  
                 MODS=$ac_optarg ;;  
               
             -disable | --disable)  
                 ac_prev=disable ;;  
             -disable=* | --disable=*)  
                 DISABLE=$ac_optarg ;;  
               
             -enable | --enable)  
                 ac_prev=enable ;;  
             -enable=* | --enable=*)  
                 ENABLE=$ac_optarg ;;  
               
             -noopt | --noopt)  
                 ac_prev=noopt ;;  
             -noopt=* | --noopt=*)  
                 NOOPT=$ac_optarg ;;  
               
 #           -cpp | --cpp)  
 #               ac_prev=cpp ;;  
 #           -cpp=* | --cpp=*)  
 #               CPP=$ac_optarg ;;  
               
             -fortran | --fortran | -fc | --fc)  
                 ac_prev=fc ;;  
             -fc=* | --fc=*)  
                 FC=$ac_optarg ;;  
               
             -ieee | --ieee)  
                 IEEE=1 ;;  
             -noieee | --noieee)  
                 IEEE=0 ;;  
               
             -mpi | --mpi)  
                 MPI=1 ;;  
             -nompi | --nompi)  
                 MPI=0 ;;  
               
             -jam | --jam)  
                 JAM=1 ;;  
             -nojam | --nojam)  
                 JAM=0 ;;  
               
             -*)  
                 echo "Error: unrecognized option: "$ac_option  
                 usage  
                 ;;  
               
             *)  
                 echo "Error: unrecognized argument: "$ac_option  
                 usage  
                 ;;  
               
         esac  
           
     done  
475  }  }
476    
477  #  Parse the package dependency information  #  Parse the package dependency information
# Line 199  get_pdepend_list()  { Line 480  get_pdepend_list()  {
480      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
481      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
482      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
483          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
484          > ./.pd_tmp          > ./.pd_tmp
485      source ./.pd_tmp      . ./.pd_tmp
486      rm -f ./.pd_tmp      rm -f ./.pd_tmp
487    
488      echo -n "PNAME = "${}      printf "PNAME = "${}
489  }  }
490    
491    
492  #  Explain usage  #  Explain usage
493  usage()  {  usage()  {
494      echo ""  cat <<EOF
495      echo "Usage: "$0" [OPTIONS]"  
496      echo "  where [OPTIONS] can be:"$'\n'  Usage: "$0" [OPTIONS]
497      echo "    -help | --help | -h | --h"    where [OPTIONS] can be:
498      echo "    -nooptfile | --nooptfile"  
499      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"      -help | --help | -h | --h
500      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"            Print this help message and exit.
501      echo "    -pdepend NAME | --pdepend NAME"  
502      echo "      -pdepend=NAME | --pdepend=NAME"      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
503      echo "    -pdefault NAME | --pdefault NAME"        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
504      echo "      -pdefault=NAME | --pdefault=NAME"            Use "NAME" as the adoptfile.  By default, the file at
505      echo "    -makefile NAME | -ma NAME"            "tools/adjoint_options/adjoint_default" will be used.
506      echo "      --makefile=NAME | -ma=NAME"  
507      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"      -nooptfile | --nooptfile
508      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
509      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
510      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"            Use "NAME" as the optfile.  By default, an attempt will be
511      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"            made to find an appropriate "standard" optfile in the
512      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"            tools/build_options/ directory.
513      echo "    -disable NAME | --disable NAME"  
514      echo "      -disable=NAME | --disable=NAME"      -pdepend NAME | --pdepend NAME
515      echo "    -enable NAME | --enable NAME"        -pdepend=NAME | --pdepend=NAME
516      echo "      -enable=NAME | --enable=NAME"            Get package dependency information from "NAME".
517      echo "    -noopt NAME | --noopt NAME"  
518      echo "      -noopt=NAME | --noopt=NAME"      -pdefault NAME | --pdefault NAME
519  #    echo "    -cpp NAME | --cpp NAME"        -pdefault=NAME | --pdefault=NAME
520  #    echo "      -cpp=NAME | --cpp=NAME"            Get the default package list from "NAME".
521      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"  
522      echo "      -fc=NAME | --fc=NAME"      -make NAME | -m NAME
523      echo "    -[no]ieee | --[no]ieee"        --make=NAME | -m=NAME
524      echo "    -[no]mpi | --[no]mpi"            Use "NAME" for the MAKE program. The default is "make" but
525      echo "    -[no]jam | --[no]jam"$'\n'            many platforms, "gmake" is the preferred choice.
526      echo "  and NAME is a string such as:"$'\n'  
527      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"      -makefile NAME | -mf NAME
528      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"        --makefile=NAME | -mf=NAME
529      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"$'\n'            Call the makefile "NAME".  The default is "Makefile".
530      echo "  which, depending upon your shell, may need to be single-quoted"  
531      echo "  if it contains spaces, dashes, or other special characters."      -makedepend NAME | -md NAME
532          --makedepend=NAME | -md=NAME
533              Use "NAME" for the MAKEDEPEND program.
534    
535        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
536          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
537              Specify the location of the MITgcm ROOTDIR as "NAME".
538              By default, genamke will try to find the location by
539              looking in parent directories (up to the 5th parent).
540    
541        -mods NAME | --mods NAME | -mo NAME | --mo NAME
542          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
543              Here, "NAME" specifies a list of directories that are
544              used for additional source code.  Files found in the
545              "mods list" are given preference over files of the same
546              name found elsewhere.
547    
548        -disable NAME | --disable NAME
549          -disable=NAME | --disable=NAME
550              Here "NAME" specifies a list of packages that we don't
551              want to use.  If this violates package dependencies,
552              genamke will exit with an error message.
553    
554        -enable NAME | --enable NAME
555          -enable=NAME | --enable=NAME
556              Here "NAME" specifies a list of packages that we wish
557              to specifically enable.  If this violates package
558              dependencies, genamke will exit with an error message.
559    
560        -standarddirs NAME | --standarddirs NAME
561          -standarddirs=NAME | --standarddirs=NAME
562              Here, "NAME" specifies a list of directories to be
563              used as the "standard" code.
564    
565        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
566          -fc=NAME | --fc=NAME
567              Use "NAME" as the fortran compiler.  By default, genmake
568              will search for a working compiler by trying a list of
569              "usual suspects" such as g77, f77, etc.
570    
571        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
572              Use "NAME" as the C compiler.  By default, genmake
573              will search for a working compiler by trying a list of
574              "usual suspects" such as gcc, c89, cc, etc.
575    
576        -[no]ieee | --[no]ieee
577              Do or don't use IEEE numerics.  Note that this option
578              *only* works if it is supported by the OPTFILE that
579              is being used.
580    
581        -ignoretime | -ignore_time | --ignoretime | --ignore_time
582              Ignore all the "wall clock" routines entirely.  This will
583              not in any way hurt the model results -- it simply means
584              that the code that checks how long the model spends in
585              various routines will give junk values.
586    
587        -ts | --ts
588              Produce timing information per timestep
589        -papis | --papis
590              Produce summary MFlop/s (and IPC) with PAPI per timestep
591        -pcls | --pcls
592              Produce summary MFlop/s etc. with PCL per timestep
593        -foolad | --foolad
594              Fool the AD code generator
595        -papi | --papi
596              Performance analysis with PAPI
597        -pcl | --pcl
598              Performance analysis with PCL
599        -hpmt | --hpmt
600              Performance analysis with the HPM Toolkit
601    
602        -gsl | --gsl
603              Use GSL to control floating point rounding and precision
604        -devel | --devel
605              Add additional warning and debugging flags for development
606    
607        -mpi | --mpi
608              Include MPI header files and link to MPI libraries
609        -mpi=PATH | --mpi=PATH
610              Include MPI header files and link to MPI libraries using MPI_ROOT
611              set to PATH. i.e. Include files from \$PATH/include, link to libraries
612              from \$PATH/lib and use binaries from \$PATH/bin.
613    
614        -es | --es | -embed-source | --embed-source
615              Embed a tarball containing the full source code
616              (including the Makefile, etc.) used to build the
617              executable [off by default]
618    
619        -bash NAME
620              Explicitly specify the Bourne or BASH shell to use
621    
622      While it is most often a single word, the "NAME" variables specified
623      above can in many cases be a space-delimited string such as:
624    
625        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
626        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
627        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
628    
629      which, depending upon your shell, may need to be single-quoted.
630    
631      For more detailed genmake documentation, please see:
632    
633        http://mitgcm.org/devel_HOWTO/
634    
635    EOF
636    
637      exit 1      exit 1
638  }  }
639    
640  # Dump all important state  #  Build a CPP macro to automate calling C routines from FORTRAN
641  dump_state()  {  get_fortran_c_namemangling()  {
642      fname=$1  
643      echo " " > $fname      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
644        if test ! "x$FC_NAMEMANGLE" = x ; then
645            return 0
646        fi
647    
648        default_nm="#define FC_NAMEMANGLE(X) X ## _"
649        
650        cat > genmake_test.c <<EOF
651    void tcall( char * string ) { tsub( string ); }
652    EOF
653        $MAKE genmake_test.o >> genmake_warnings 2>&1
654      RETVAL=$?      RETVAL=$?
655      if test "x${RETVAL}" = x ; then      if test "x$RETVAL" != x0 ; then
656          echo "Error: cannot write to $fname"          FC_NAMEMANGLE=$default_nm
657          exit 1          cat <<EOF>> genmake_errors
658    
659    WARNING: C test compile fails
660    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
661    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
662    EOF
663            return 1
664        fi
665        c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
666        RETVAL=$?
667        if test "x$RETVAL" != x0 ; then
668            FC_NAMEMANGLE=$default_nm
669            cat <<EOF>> genmake_warnings
670    
671    WARNING: The "nm" command failed.
672    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
673    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
674    EOF
675            return 1
676        fi
677        cat > genmake_tcomp.$FS <<EOF
678          subroutine tcall( string )
679          character*(*) string
680          call tsub( string )
681          end
682    EOF
683        $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
684        RETVAL=$?
685        if test "x$RETVAL" != x0 ; then
686            FC_NAMEMANGLE=$default_nm
687            cat <<EOF>> genmake_warnings
688    
689    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
690    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
691    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
692    EOF
693            return 1
694        fi
695        f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
696        RETVAL=$?
697        if test "x$RETVAL" != x0 ; then
698            FC_NAMEMANGLE=$default_nm
699            cat <<EOF>> genmake_warnings
700    
701    WARNING: The "nm" command failed.
702    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
703    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
704    EOF
705            return 1
706        fi
707    
708        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
709        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
710        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
711        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
712    
713        nmangle="X"
714        if test "x$c_a" != "x$f_a" ; then
715            comm="echo x$f_a | sed -e 's|x$c_a||'"
716            a=`eval $comm`
717            nmangle="$a ## $nmangle"
718        fi
719        if test "x$c_b" != "x$f_b" ; then
720            comm="echo x$f_b | sed -e 's|x$c_b||'"
721            b=`eval $comm`
722            nmangle="$nmangle ## $b"
723        fi
724    
725        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
726    
727        #  cleanup the testing files
728        rm -f genmake_tcomp.* genmake_test.*
729    }
730    
731    
732    check_HAVE_CLOC()  {
733        get_fortran_c_namemangling
734        cat <<EOF > genmake_tc_1.c
735    $FC_NAMEMANGLE
736    #include <stdio.h>
737    #include <stdlib.h>
738    #include <unistd.h>
739    #include <assert.h>
740    #include <sys/time.h>
741    void FC_NAMEMANGLE(cloc) ( double *curtim )
742    {
743     struct timeval tv1;
744     gettimeofday(&tv1 , (void *)NULL );
745     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
746     *curtim = *curtim/1.E6;
747    }
748    EOF
749        COMM="$CC $CFLAGS -c genmake_tc_1.c"
750        echo $COMM >> genmake_warnings
751        $COMM >> genmake_warnings 2>&1
752        RET_C=$?
753        cat <<EOF > genmake_tc_2.$FS
754          program hello
755          REAL*8 wtime
756          external cloc
757          call cloc(wtime)
758          print *," HELLO WORLD", wtime
759          end
760    EOF
761        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
762        echo $COMM >> genmake_warnings
763        $COMM >> genmake_warnings 2>&1
764        RET_F=$?
765        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
766        RETVAL=$?
767        if test "x$RETVAL" = x0 ; then
768            HAVE_CLOC=t
769            DEFINES="$DEFINES -DHAVE_CLOC"
770        fi
771        rm -f genmake_tc*
772    }
773    
774    
775    check_HAVE_SIGREG()  {
776        if test ! "x$HAVE_SIGREG" = x ; then
777            return
778        fi
779        get_fortran_c_namemangling
780        cat <<EOF > genmake_tc_1.c
781    $FC_NAMEMANGLE
782    #include <stdlib.h>
783    #include <stdio.h>
784    #include <signal.h>
785    #include <errno.h>
786    #include <ucontext.h>
787    
788    int * ip;
789    
790    static void killhandler(
791        unsigned int sn, siginfo_t  si, struct ucontext *sc )
792    {
793        *ip = *ip + 1;
794        return;
795    }
796    
797    void FC_NAMEMANGLE(sigreg) (int * aip)
798    {
799        struct sigaction s;
800        ip = aip;
801        s.sa_flags = SA_SIGINFO;
802        s.sa_sigaction = (void *)killhandler;
803        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
804            printf("Sigaction returned error = %d\n", errno);
805            exit(0);
806        }
807        return;
808    }
809    EOF
810        COMM="$CC $CFLAGS -c genmake_tc_1.c"
811        echo $COMM >> genmake_warnings
812        $COMM >> genmake_warnings 2>&1
813        RET_C=$?
814        cat <<EOF > genmake_tc_2.$FS
815          program hello
816          integer anint
817          common /iv/ anint
818          external sigreg
819          call sigreg(anint)
820          end
821    EOF
822        echo >> genmake_warnings
823        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
824        cat genmake_tc_2.$FS >> genmake_warnings
825        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
826        echo $COMM >> genmake_warnings
827        $COMM >> genmake_warnings 2>&1
828        RETVAL=$?
829        if test "x$RETVAL" = x0 ; then
830            HAVE_SIGREG=t
831            DEFINES="$DEFINES -DHAVE_SIGREG"
832        fi
833        rm -f genmake_tc*
834    }
835    
836    
837    check_HAVE_SETRLSTK()  {
838        if test "x$HAVE_SETRLSTK" = xt ; then
839            DEFINES="$DEFINES -DHAVE_SETRLSTK"
840            return
841        fi  
842        if test ! "x$HAVE_SETRLSTK" = x ; then
843            return
844        fi
845        get_fortran_c_namemangling
846        cat <<EOF > genmake_tc_1.c
847    $FC_NAMEMANGLE
848    #include <sys/time.h>
849    #include <sys/resource.h>
850    #include <unistd.h>
851    void FC_NAMEMANGLE(setrlstk) ()
852    {
853        struct rlimit rls;
854        rls.rlim_cur = RLIM_INFINITY;
855        rls.rlim_max = RLIM_INFINITY;
856        setrlimit(RLIMIT_STACK, &rls);
857        return;
858    }
859    EOF
860        COMM="$CC $CFLAGS -c genmake_tc_1.c"
861        echo $COMM >> genmake_warnings
862        $COMM >> genmake_warnings 2>&1
863        RET_C=$?
864        cat <<EOF > genmake_tc_2.$FS
865          program hello
866          external setrlstk
867          call setrlstk()
868          end
869    EOF
870        echo >> genmake_warnings
871        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
872        cat genmake_tc_2.$FS >> genmake_warnings
873        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
874        echo $COMM >> genmake_warnings
875        $COMM >> genmake_warnings 2>&1
876        RETVAL=$?
877        if test "x$RETVAL" = x0 ; then
878            HAVE_SETRLSTK=t
879            DEFINES="$DEFINES -DHAVE_SETRLSTK"
880        fi
881        rm -f genmake_tc*
882    }
883    
884    
885    check_HAVE_STAT()  {
886        get_fortran_c_namemangling
887        cat <<EOF > genmake_tc_1.c
888    $FC_NAMEMANGLE
889    #include <stdio.h>
890    #include <stdlib.h>
891    #include <unistd.h>
892    #include <sys/stat.h>
893    #include <sys/types.h>
894    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
895    {
896        char name[512];
897        struct stat astat;
898    
899        name[0] = 'a'; name[1] = '\0';
900        if (! stat(name, &astat))
901            *nbyte = (int)(astat.st_size);
902        else
903            *nbyte = -1;
904    }
905    EOF
906        COMM="$CC $CFLAGS -c genmake_tc_1.c"
907        echo $COMM >> genmake_warnings
908        $COMM >> genmake_tc.log 2>&1
909        RET_C=$?
910        cat <<EOF > genmake_tc_2.$FS
911          program hello
912          integer nbyte
913          call tfsize(nbyte)
914          print *," HELLO WORLD", nbyte
915          end
916    EOF
917        echo >> genmake_warnings
918        echo "running: check_HAVE_STAT()" >> genmake_warnings
919        cat genmake_tc_2.$FS >> genmake_warnings
920        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
921        echo $COMM >> genmake_warnings
922        $COMM >> genmake_tc.log 2>&1
923        RETVAL=$?
924        if test "x$RETVAL" = x0 ; then
925            HAVE_STAT=t
926            DEFINES="$DEFINES -DHAVE_STAT"
927      fi      fi
928      echo "makefile "$makefile > $fname      rm -f genmake_tc*
929  }  }
930    
931    
932  #eh3 # This is the generic configuration.  check_netcdf_libs()  {
933  #eh3 set LN         = ( 'ln -s' )      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
934  #eh3 set CPP        = ( '/lib/cpp -P' )          return
935  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      fi
936  #eh3 set KPP        = (  )      echo >> genmake_warnings
937  #eh3 set FC         = ( 'f77' )      echo "running: check_netcdf_libs()" >> genmake_warnings
938  #eh3 set LINK       = $FC      cat <<EOF > genmake_tnc.F
939  #eh3 set MAKEDEPEND = ( 'makedepend' )        program fgennc
940  #eh3 set INCLUDES   = ( -I. )  #include "netcdf.inc"
941  #eh3 set FFLAGS     = (  )  EOF
942  #eh3 set FOPTIM     = (  )      if test ! "x$MPI" = x ; then
943  #eh3 set CFLAGS     = (  )          echo '#include "mpif.h"' >> genmake_tnc.F
944  #eh3 set KFLAGS1    = (  )      fi
945  #eh3 set KFLAGS2    = (  )      cat <<EOF >> genmake_tnc.F
946  #eh3 set LIBS       = (  )        integer iret, ncid, xid
947  #eh3 set KPPFILES   = (  )        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
948  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
949  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )        iret = nf_def_dim(ncid, 'X', 11, xid)
950          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
951          iret = nf_close(ncid)
952          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
953          end
954    EOF
955        echo "===  genmake_tnc.F  ===" > genmake_tnc.log
956        cat genmake_tnc.F >> genmake_tnc.log
957        echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
958        RET_CPP=f
959        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
960        echo "$COMM" >> genmake_tnc.log
961        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
962        if test "x$RET_CPP" = xf ; then
963            echo "  WARNING: CPP failed to pre-process the netcdf test." \
964                >> genmake_tnc.log
965            echo "    Please check that \$INCLUDES is properly set." \
966                >> genmake_tnc.log
967        fi
968        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
969        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
970        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
971            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
972        RET_COMPILE=$?
973        cat genmake_tnc.log >> genmake_warnings
974    
975        #EH3  Remove test program execution for machines that either disallow
976        #EH3  execution or cannot support it (eg. cross-compilers)
977        #EH3
978        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
979        #EH3 RETVAL=$?
980        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
981    
982        if test "x$RET_COMPILE" = x0 ; then
983            HAVE_NETCDF=t
984        else
985            # try again with "-lnetcdf" added to the libs
986            echo "try again with added '-lnetcdf'" > genmake_tnc.log
987            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
988            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
989            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
990            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
991                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
992                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
993            RET_COMPILE=$?
994            cat genmake_tnc.log >> genmake_warnings
995            if test "x$RET_COMPILE" = x0 ; then
996                LIBS="$LIBS -lnetcdf"
997                HAVE_NETCDF=t
998            else
999            # try again with "-lnetcdff" added to the libs
1000                echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1001                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1002                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1003                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1004                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1005                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1006                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1007                RET_COMPILE=$?
1008                cat genmake_tnc.log >> genmake_warnings
1009                if test "x$RET_COMPILE" = x0 ; then
1010                    LIBS="$LIBS -lnetcdff -lnetcdf"
1011                    HAVE_NETCDF=t
1012                fi
1013            fi
1014        fi
1015        rm -f genmake_tnc*
1016    }
1017    
1018    
1019    
1020    ###############################################################################
1021    #   Sequential part of script starts here
1022    ###############################################################################
1023    
1024  #  Set defaults here  #  Set defaults here
1025    COMMANDL="$0 $@"
1026    
1027  PLATFORM=  PLATFORM=
1028  LN=  LN=
1029  S64=  S64=
1030  KPP=  KPP=
1031  FC=  #FC=
1032    #CC=gcc
1033    #CPP=
1034  LINK=  LINK=
1035    DEFINES=
1036  PACKAGES=  PACKAGES=
1037  ENABLE=  ENABLE=
1038  DISABLE=  DISABLE=
1039  MAKEFILE=  # MAKEFILE=
1040  MAKEDEPEND=  # MAKEDEPEND=
1041  PDEPEND=  PDEPEND=
1042    DUMPSTATE=t
1043  PDEFAULT=  PDEFAULT=
1044  OPTFILE=  OPTFILE=
1045  INCLUDES=-I.  INCLUDES="-I. $INCLUDES"
1046  FFLAGS=  FFLAGS=
1047  FOPTIM=  FOPTIM=
1048    FEXTRAFLAGS=
1049    USE_EXTENDED_SRC=
1050    EXTENDED_SRC_FLAG=
1051  CFLAGS=  CFLAGS=
1052  KFLAGS1=  KFLAGS1=
1053  KFLAGS2=  KFLAGS2=
1054    #LDADD=
1055  LIBS=  LIBS=
1056  KPPFILES=  KPPFILES=
1057  NOOPTFILES=  NOOPTFILES=
1058  NOOPTFLAGS=  NOOPTFLAGS=
1059    MPI=
1060    MPIPATH=
1061    TS=
1062    PAPIS=
1063    PCLS=
1064    FOOLAD=
1065    PAPI=
1066    PCL=
1067    HPMT=
1068    GSL=
1069    DEVEL=
1070    HAVE_TEST_L=
1071    
1072    # DEFINES checked by test compilation or command-line
1073    HAVE_SYSTEM=
1074    HAVE_FDATE=
1075    FC_NAMEMANGLE=
1076    HAVE_CLOC=
1077    # HAVE_SETRLSTK=
1078    HAVE_STAT=
1079    HAVE_NETCDF=
1080    HAVE_ETIME=
1081    IGNORE_TIME=
1082    
1083  MODS=  MODS=
1084  TOOLSDIR=  TOOLSDIR=
1085  SOURCEDIRS=  SOURCEDIRS=
1086  INCLUDEDIRS=  INCLUDEDIRS=
1087    STANDARDDIRS="USE_THE_DEFAULT"
1088    
1089    G2ARGS=
1090    BASH=
1091  PWD=`pwd`  PWD=`pwd`
1092  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1093  THISHOSTNAME=`hostname`  test "x$AWK" = x   &&  AWK=awk
1094    EMBED_SRC=
1095    THISHOST=`hostname`
1096  THISCWD=`pwd`  THISCWD=`pwd`
1097  THISDATE=`date`  THISDATE=`date`
1098    THISUSER=`echo $USER`
1099    THISVER=
1100  MACHINE=`uname -a`  MACHINE=`uname -a`
1101    EXECUTABLE=
1102    EXEHOOK=
1103    EXEDIR=
1104    PACKAGES_CONF=
1105    IEEE=
1106    if test "x$MITGCM_IEEE" != x ; then
1107        IEEE=$MITGCM_IEEE
1108    fi
1109    FS=
1110    FS90=
1111    
1112    AUTODIFF_PKG_USED=f
1113    AD_OPTFILE=
1114    TAF=
1115    AD_TAF_FLAGS=
1116    FTL_TAF_FLAGS=
1117    SVD_TAF_FLAGS=
1118    TAF_EXTRA=
1119    TAMC=
1120    AD_TAMC_FLAGS=
1121    FTL_TAF_FLAGS=
1122    SVD_TAMC_FLAGS=
1123    TAMC_EXTRA=
1124    
1125    
1126    #  The following state can be set directly by command-line switches
1127    gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1128    gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"
1129    
1130    #  The following state is not directly set by command-line switches
1131    gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1132    gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1133    gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1134    gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1135    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
1136    
1137    #  The following are all related to adjoint/tangent-linear stuff
1138    gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1139    gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1140    gm_s12="TAF_EXTRA TAMC_EXTRA"
1141    
1142    gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
1143    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1144    
1145    cat <<EOF
1146    
1147    GENMAKE :
1148    
1149  echo $'\n'"===  Processing options files and arguments  ==="  A program for GENerating MAKEfiles for the MITgcm project.  For a
1150  gm_local="./gm_local"  quick list of options, use "genmake -h" or for more detail see:
1151  echo -n "  getting local config information:  "  
1152  if test -e $gm_local ; then    http://mitgcm.org/devel_HOWTO/
1153    
1154    EOF
1155    
1156    echo "===  Processing options files and arguments  ==="
1157    gm_local="genmake_local"
1158    printf "  getting local config information:  "
1159    if test -f $gm_local ; then
1160      echo "using $gm_local"      echo "using $gm_local"
1161      source $gm_local      . $gm_local
1162      echo "DISABLE=$DISABLE"$'\n'"ENABLE=$ENABLE"      # echo "DISABLE=$DISABLE"
1163        # echo "ENABLE=$ENABLE"
1164  else  else
1165      echo "none found"      echo "none found"
1166  fi  fi
1167    
1168  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1169  OPTIONS=()  #OPTIONS=
1170  n=0  #n=0
1171  for i ; do  #for i ; do
1172     setvar="OPTIONS[$n]='$i'"  #   echo "$i  $n"
1173     #  echo "  $setvar"  #   setvar="OPTIONS[$n]='$i'"
1174     eval "$setvar"  #   #  echo "  $setvar"
1175     n=$(( $n + 1 ))  #   eval "$setvar"
1176    #   n=$(( $n + 1 ))
1177    #done
1178    #parse_options
1179    ac_prev=
1180    for ac_option in "$@" ; do
1181    
1182        G2ARGS="$G2ARGS \"$ac_option\""
1183    
1184        # If the previous option needs an argument, assign it.
1185        if test -n "$ac_prev"; then
1186            eval "$ac_prev=\$ac_option"
1187            ac_prev=
1188            continue
1189        fi
1190        
1191        ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1192        
1193        case $ac_option in
1194            
1195            -help | --help | -h | --h)
1196                usage ;;
1197            
1198            -nooptfile | --nooptfile)
1199                OPTFILE="NONE" ;;
1200            -optfile | --optfile | -of | --of)
1201                ac_prev=OPTFILE ;;
1202            -optfile=* | --optfile=* | -of=* | --of=*)
1203                OPTFILE=$ac_optarg ;;
1204            
1205            -adoptfile | --adoptfile | -adof | --adof)
1206                ac_prev=AD_OPTFILE ;;
1207            -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1208                AD_OPTFILE=$ac_optarg ;;
1209            
1210            -pdepend | --pdepend)
1211                ac_prev=PDEPEND ;;
1212            -pdepend=* | --pdepend=*)
1213                PDEPEND=$ac_optarg ;;
1214            
1215            -pdefault | --pdefault)
1216                ac_prev=PDEFAULT ;;
1217            -pdefault=* | --pdefault=*)
1218                PDEFAULT=$ac_optarg ;;
1219            
1220            -make | --make | -m | --m)
1221                ac_prev=MAKE ;;
1222            -make=* | --make=* | -m=* | --m=*)
1223                MAKE=$ac_optarg ;;
1224            
1225            -bash | --bash)
1226                ac_prev=BASH ;;
1227            -bash=* | --bash=*)
1228                BASH=$ac_optarg ;;
1229            
1230            -makedepend | --makedepend | -md | --md)
1231                ac_prev=MAKEDEPEND ;;
1232            -makedepend=* | --makedepend=* | -md=* | --md=*)
1233                MAKEDEPEND=$ac_optarg ;;
1234            
1235            -makefile | --makefile | -ma | --ma)
1236                ac_prev=MAKEFILE ;;
1237            -makefile=* | --makefile=* | -ma=* | --ma=*)
1238                MAKEFILE=$ac_optarg ;;
1239            
1240            -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1241                echo "ERROR: The platform option has been removed.  Please specify"
1242                echo "  the build options using the \"optfile\" mechanism."
1243                echo
1244                usage
1245                ;;
1246            
1247            -rootdir | --rootdir | -rd | --rd)
1248                ac_prev=ROOTDIR ;;
1249            -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1250                ROOTDIR=$ac_optarg ;;
1251            
1252            -mods | --mods | -mo | --mo)
1253                ac_prev=MODS ;;
1254            -mods=* | --mods=* | -mo=* | --mo=*)
1255                MODS=$ac_optarg ;;
1256            
1257            -disable | --disable)
1258                ac_prev=DISABLE ;;
1259            -disable=* | --disable=*)
1260                DISABLE=$ac_optarg ;;
1261            
1262            -enable | --enable)
1263                ac_prev=ENABLE ;;
1264            -enable=* | --enable=*)
1265                ENABLE=$ac_optarg ;;
1266            
1267            -standarddirs | --standarddirs)
1268                ac_prev=STANDARDDIRS ;;
1269            -standarddirs=* | --standarddirs=*)
1270                STANDARDDIRS=$ac_optarg ;;
1271    
1272    #           -cpp | --cpp)
1273    #               ac_prev=cpp ;;
1274    #           -cpp=* | --cpp=*)
1275    #               CPP=$ac_optarg ;;
1276            
1277            -cc | --cc)
1278                ac_prev=CC ;;
1279            -cc=* | --cc=*)
1280                CC=$ac_optarg ;;
1281            
1282            -fortran | --fortran | -fc | --fc)
1283                ac_prev=FC ;;
1284            -fc=* | --fc=*)
1285                FC=$ac_optarg ;;
1286            
1287            -fs | --fs)
1288                ac_prev=FS ;;
1289            -fs=* | --fs=*)
1290                FS=$ac_optarg ;;
1291            
1292            -fs90 | --fs90)
1293                ac_prev=FS90 ;;
1294            -fs90=* | --fs90=*)
1295                FS90=$ac_optarg ;;
1296            
1297            -ieee | --ieee)
1298                IEEE=true ;;
1299            -noieee | --noieee)
1300                IEEE= ;;
1301    
1302            -ts | --ts)
1303                TS=true ;;
1304            -papis | --papis)
1305                PAPIS=true ;;
1306            -pcls | --pcls)
1307                PCLS=true ;;
1308            -foolad | --foolad)
1309                FOOLAD=true ;;
1310            -papi | --papi)
1311                PAPI=true ;;
1312            -pcl | --pcl)
1313                PCL=true ;;
1314            -hpmt | --hpmt)
1315                HPMT=true ;;
1316    
1317            -gsl | --gsl)
1318                GSL=true ;;
1319    
1320            -devel | --devel)
1321                DEVEL=true ;;
1322    
1323            -mpi | --mpi)
1324                MPI=true ;;
1325            -mpi=* | --mpi=*)
1326                MPIPATH=$ac_optarg
1327                MPI=true ;;
1328            
1329    #       -jam | --jam)
1330    #           JAM=1 ;;
1331    #       -nojam | --nojam)
1332    #           JAM=0 ;;
1333            
1334            -ds | --ds)
1335                DUMPSTATE=t ;;
1336            
1337            -taf_extra | --taf_extra)
1338                ac_prev=TAF_EXTRA ;;
1339            -taf_extra=* | --taf_extra=*)
1340                TAF_EXTRA=$ac_optarg ;;
1341    
1342            -tamc_extra | --tamc_extra)
1343                ac_prev=TAMC_EXTRA ;;
1344            -tamc_extra=* | --tamc_extra=*)
1345                TAMC_EXTRA=$ac_optarg ;;
1346            
1347            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1348                IGNORE_TIME="-DIGNORE_TIME" ;;
1349    
1350            -es | --es | -embed-source | --embed-source)
1351                EMBED_SRC=t ;;
1352    
1353            -*)
1354                echo "Error: unrecognized option: "$ac_option
1355                usage
1356                ;;
1357            
1358            *)
1359                echo "Error: unrecognized argument: "$ac_option
1360                usage
1361                ;;
1362            
1363        esac
1364        
1365  done  done
1366  parse_options  
1367    
1368    if test -f ./.genmakerc ; then
1369        echo
1370        echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1371        echo "  file.  This file format is no longer supported.  For directions on"
1372        echo "  how to setup and use the new \"genmake2\" script, please see:"
1373        echo "    http://mitgcm.org/devel_HOWTO/"
1374        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1375        echo "WARNING: ignore \"./.genmakerc\" and continue."
1376        echo
1377    fi
1378    
1379    #  Find the MITgcm ${ROOTDIR}
1380    if test "x${ROOTDIR}" = x ; then
1381        tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1382        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1383            ROOTDIR=".."
1384        else
1385            for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1386                if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1387                    ROOTDIR=$d
1388                    printf "Warning:  ROOTDIR was not specified but there appears to be"
1389                    echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1390                    break
1391                fi
1392            done
1393        fi
1394    fi
1395    if test "x${ROOTDIR}" = x ; then
1396        echo "Error: Cannot determine ROOTDIR for MITgcm code."
1397        echo "  Please specify a ROOTDIR using either an options "
1398        echo "  file or a command-line option."
1399        exit 1
1400    fi
1401    if test ! -d ${ROOTDIR} ; then
1402        echo "Error: the specified ROOTDIR (\"$ROOTDIR\") does not exist!"
1403        exit 1
1404    fi
1405    
1406    #  Find the MITgcm ${THISVER}
1407    version_file="${ROOTDIR}/doc/tag-index"
1408    if test -f $version_file ; then
1409        THISVER=`grep '^checkpoint' $version_file | head -1`
1410    #-  remove ./BUILD_INFO.h file if older than version_file
1411        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1412            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1413            rm -f ./BUILD_INFO.h
1414        fi
1415    fi
1416    
1417    if test "x$MAKEFILE" = x ; then
1418        MAKEFILE="Makefile"
1419    fi
1420    
1421  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1422  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1423      echo "Warning: no OPTFILE specified so we'll look for possible settings"      if test "x$MITGCM_OF" = x ; then
1424      echo $'\n'"===  Searching for possible settings for OPTFILE  ==="          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1425      find_possible_configs          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1426  else          find_possible_configs
1427      if test "x$OPTFILE" = xNONE ; then      else
1428          echo "    OPTFILE=NONE so we'll try to use default settings"          OPTFILE=$MITGCM_OF
1429      else      fi
1430          if test -f "$OPTFILE" -a -r "$OPTFILE" ; then  fi
1431              echo "    using OPTFILE=\"$OPTFILE\""  if test "x$OPTFILE" != xNONE ; then
1432              source "$OPTFILE"      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1433              RETVAL=$?          echo "    using OPTFILE=\"$OPTFILE\""
1434              if test "x$RETVAL" != x0 ; then          . "$OPTFILE"
1435                  echo -n "Error: failed to source OPTFILE \"$OPTFILE\""          RETVAL=$?
1436                  echo "--please check that variable syntax is bash-compatible"          if test "x$RETVAL" != x0 ; then
1437                  exit 1              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1438              fi              echo "--please check that variable syntax is bash-compatible"
         else  
             echo "Error: can't read OPTFILE=\"$OPTFILE\""  
1439              exit 1              exit 1
1440          fi          fi
1441            if test "x$DUMPSTATE" != xf ; then
1442                cp -f $OPTFILE "genmake_optfile"
1443            fi
1444        else
1445            echo "Error: can't read OPTFILE=\"$OPTFILE\""
1446            exit 1
1447      fi      fi
1448  fi  fi
1449    
1450  echo $'\n'"===  Setting defaults  ==="  echo "  getting AD_OPTFILE information:  "
1451  echo -n "  Adding MODS directories:  "  if test "x${AD_OPTFILE}" = x ; then
1452  for d in $MODS ; do      if test "x$MITGCM_AD_OF" = x ; then
1453      if test ! -d $d ; then          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
         echo $'\n\n'"Error: MODS directory \"$d\" not found!"  
         exit 1  
1454      else      else
1455          echo -n " $d"          AD_OPTFILE=$MITGCM_AD_OF
         SOURCEDIRS="$SOURCEDIRS $d"  
         INCLUDEDIRS="$INCLUDEDIRS $d"  
1456      fi      fi
1457    fi
1458    if test "x${AD_OPTFILE}" != xNONE ; then
1459        if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1460            echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1461            . "$AD_OPTFILE"
1462            RETVAL=$?
1463            if test "x$RETVAL" != x0 ; then
1464                printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1465                echo "--please check that variable syntax is bash-compatible"
1466                exit 1
1467            fi
1468            if test "x$DUMPSTATE" != xf ; then
1469                cp -f $AD_OPTFILE "genmake_ad_optfile"
1470            fi
1471        else
1472            echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
1473            exit 1
1474        fi
1475    fi
1476    
1477    #====================================================================
1478    #  Set default values if not set by the optfile
1479    #
1480    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1481    #  either set defaults or complain and abort!
1482    if test ! "x$BASH" = x ; then
1483        # add a trailing space so that it works within the Makefile syntax (see below)
1484        BASH="$BASH "
1485    fi
1486    if test "x$FC" = x ; then
1487        cat <<EOF 1>&2
1488    
1489    Error: no Fortran compiler: please specify using one of the following:
1490      1) within the options file ("FC=...") as specified by "-of=OPTFILE"
1491      2) the "-fc=XXX" command-line option
1492      3) the "./genmake_local" file
1493    EOF
1494        exit 1
1495    fi
1496    if test "x$CC" = x ; then
1497        CC=cc
1498    #     cat <<EOF 1>&2
1499    # Error: no C compiler: please specify using one of the following:
1500    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1501    #   2) the "-cc=XXX" command-line option
1502    #   3) the "./genmake_local" file
1503    # EOF
1504    #     exit 1
1505    fi
1506    if test "x$LINK" = x ; then
1507        LINK=$FC
1508    fi
1509    if test "x$MAKE" = x ; then
1510        MAKE="make"
1511    fi
1512    if test "x$CPP" = x ; then
1513        CPP=cpp
1514    fi
1515    #EH3 === UGLY ===
1516    #  The following is an ugly little hack to check for $CPP in /lib/ and
1517    #  it should eventually be replaced with a more general function that
1518    #  searches a combo of the user's path and a list of "usual suspects"
1519    #  to find the correct location for binaries such as $CPP.
1520    for i in " " "/lib/" ; do
1521        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1522  done  done
1523  echo  #EH3 === UGLY ===
1524    echo "#define A a" | $CPP > test_cpp 2>&1
1525    RETVAL=$?
1526    if test "x$RETVAL" != x0 ; then
1527        cat <<EOF 1>&2
1528    
1529  if test "x$MAKEFILE" = x ; then  Error: C pre-processor "$CPP" failed the test case: please specify using:
1530      MAKEFILE="Makefile"  
1531      1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1532      2) the "./genmake_local" file
1533      3) with the CPP environment variable
1534    
1535    EOF
1536        exit 1
1537    else
1538        rm -f test_cpp
1539  fi  fi
1540  if test "x${PLATFORM}" = x ; then  look_for_makedepend
1541      PLATFORM=$p_PLATFORM  if test "x$LN" = x ; then
1542        LN="ln -s"
1543  fi  fi
1544    echo "test" > genmake_test_ln
1545    $LN genmake_test_ln genmake_tlink
1546    RETVAL=$?
1547    if test "x$RETVAL" != x0 ; then
1548        cat <<EOF 1>&2
1549    
1550  if test "x${ROOTDIR}" = x ; then  Error: The command "ln -s" failed -- please specify a working soft-link
1551      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then    command in the optfile.
1552          ROOTDIR=".."  
1553    EOF
1554        exit 1
1555    fi
1556    test -L genmake_tlink > /dev/null 2>&1
1557    RETVAL=$?
1558    if test "x$RETVAL" = x0 ; then
1559        HAVE_TEST_L=t
1560    fi
1561    rm -f genmake_test_ln genmake_tlink
1562    
1563    #  Check for broken *.F/*.f handling and fix if possible
1564    check_for_broken_Ff
1565    
1566    if test ! "x$MPI" = x ; then
1567          echo "  Turning on MPI cpp macros"
1568          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1569    fi
1570    
1571    if test ! "x$TS" = x ; then
1572          echo "  Turning on timing per timestep"
1573          if test ! "x$FOOLAD" = x ; then
1574                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1575          else
1576                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1577          fi
1578          PACKAGES="$PACKAGES showflops"
1579    fi
1580    if test ! "x$PAPIS" = x ; then
1581          echo "  Turning on PAPI flop summary per timestep"
1582          echo "  Please make sure PAPIINC, PAPILIB are defined"
1583          if test ! "x$FOOLAD" = x ; then
1584                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1585          else
1586                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1587          fi
1588          INCLUDES="$INCLUDES $PAPIINC"
1589          LIBS="$LIBS $PAPILIB"
1590          PACKAGES="$PACKAGES showflops"
1591    fi
1592    if test ! "x$PCLS" = x ; then
1593          echo "  Turning on PCL counter summary per timestep"
1594          echo "  Please make sure PCLINC, PCLLIB are defined"
1595          if test ! "x$FOOLAD" = x ; then
1596                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1597          else
1598                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1599          fi
1600          INCLUDES="$INCLUDES $PCLINC"
1601          LIBS="$LIBS $PCLLIB"
1602          PACKAGES="$PACKAGES showflops"
1603    fi
1604    if test ! "x$PAPI" = x ; then
1605          if test ! "x$PAPIS" = x ; then
1606              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1607              echo "  Sticking with PAPI flop summary per timestep!"
1608          else
1609              echo "  Turning on performance analysis with PAPI"
1610              echo "  Please make sure PAPIINC, PAPILIB are defined"
1611              DEFINES="$DEFINES -DUSE_PAPI"
1612              INCLUDES="$INCLUDES $PAPIINC"
1613              LIBS="$LIBS $PAPILIB"
1614          fi
1615    fi
1616    if test ! "x$PCL" = x ; then
1617          if test ! "x$PCLS" = x ; then
1618              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1619              echo "  Sticking with PCL flop summary per timestep!"
1620          else
1621              echo "  Turning on performance analysis with PCL"
1622              echo "  Please make sure PCLINC, PCLLIB are defined"
1623              DEFINES="$DEFINES -DUSE_PCL"
1624              INCLUDES="$INCLUDES $PCLINC"
1625              LIBS="$LIBS $PCLLIB"
1626          fi
1627    fi
1628    if test ! "x$HPMT" = x ; then
1629          if test ! "x$PAPI" = x ; then
1630              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1631              echo "  Sticking with PAPI!"
1632          else if test ! "x$PCL" = x ; then
1633              echo "  PCL and the HPM Toolkit cannot co-exist!"
1634              echo "  Sticking with PCL!"
1635          else
1636              echo "  Turning on performance analysis with the HPM Toolkit"
1637              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1638              DEFINES="$DEFINES -DUSE_LIBHPM"
1639              INCLUDES="$INCLUDES $HPMTINC"
1640              LIBS="$LIBS $HPMTLIB"
1641          fi
1642          fi
1643    fi
1644    if test ! "x$GSL" = x ; then
1645          echo "  Turning on use of GSL to control floating point calculations"
1646          echo "  Please make sure GSLINC, GSLLIB are defined"
1647          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1648          INCLUDES="$INCLUDES $GSLINC"
1649          LIBS="$LIBS $GSLLIB"
1650    fi
1651    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1652    if test ! "x$USE_EXTENDED_SRC" = x ; then
1653          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1654          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1655    fi
1656    
1657    printf "\n===  Checking system libraries  ===\n"
1658    printf "  Do we have the system() command using $FC...  "
1659    cat > genmake_tcomp.$FS <<EOF
1660          program hello
1661          call system('echo hi')
1662          end
1663    EOF
1664    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1665    RETVAL=$?
1666    if test "x$RETVAL" = x0 ; then
1667        HAVE_SYSTEM=t
1668        DEFINES="$DEFINES -DHAVE_SYSTEM"
1669        echo "yes"
1670    else
1671        HAVE_SYSTEM=
1672        echo "no"
1673    fi
1674    rm -f genmake_tcomp*
1675    
1676    printf "  Do we have the fdate() command using $FC...  "
1677    cat > genmake_tcomp.$FS <<EOF
1678          program hello
1679          CHARACTER*(128) string
1680          string = ' '
1681          call fdate( string )
1682          print *, string
1683          end
1684    EOF
1685    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1686    RETVAL=$?
1687    if test "x$RETVAL" = x0 ; then
1688        HAVE_FDATE=t
1689        DEFINES="$DEFINES -DHAVE_FDATE"
1690        echo "yes"
1691    else
1692        HAVE_FDATE=
1693        echo "no"
1694    fi
1695    rm -f genmake_tcomp*
1696    
1697    printf "  Do we have the etime() command using $FC...  "
1698    cat > genmake_tcomp.$FS <<EOF
1699          program hello
1700          REAL*4 ACTUAL, TARRAY(2)
1701          EXTERNAL ETIME
1702          REAL*4 ETIME
1703          actual = etime( tarray )
1704          print *, tarray
1705          end
1706    EOF
1707    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1708    RETVAL=$?
1709    if test "x$RETVAL" = x0 ; then
1710        HAVE_ETIME=t
1711        DEFINES="$DEFINES -DHAVE_ETIME"
1712        echo "yes"
1713    else
1714        HAVE_ETIME=
1715        echo "no"
1716    fi
1717    rm -f genmake_tcomp*
1718    
1719    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1720    check_HAVE_CLOC
1721    if test "x$HAVE_CLOC" != x ; then
1722        echo "yes"
1723    else
1724        echo "no"
1725        if test "x$EMBED_SRC" = xt ; then
1726            echo "    WARNING: you requested file embedding but it has"
1727            echo "      been disabled since C code cannot be called"
1728            EMBED_SRC=
1729        fi
1730    fi
1731    rm -f genmake_t*
1732    
1733    printf "  Can we unlimit the stack size using $FC...  "
1734    check_HAVE_SETRLSTK
1735    if test "x$HAVE_SETRLSTK" = xt ; then
1736        echo "yes"
1737    else
1738        echo "no"
1739    fi
1740    rm -f genmake_t*
1741    
1742    printf "  Can we register a signal handler using $FC...  "
1743    check_HAVE_SIGREG
1744    if test "x$HAVE_SIGREG" = xt ; then
1745        echo "yes"
1746    else
1747        echo "no"
1748    fi
1749    rm -f genmake_t*
1750    
1751    printf "  Can we use stat() through C calls...  "
1752    check_HAVE_STAT
1753    if test "x$HAVE_STAT" != x ; then
1754        echo "yes"
1755    else
1756        echo "no"
1757    fi
1758    rm -f genmake_t*
1759    
1760    printf "  Can we create NetCDF-enabled binaries...  "
1761    check_netcdf_libs
1762    if test "x$HAVE_NETCDF" != x ; then
1763        echo "yes"
1764    else
1765        echo "no"
1766    fi
1767    DEFINES="$DEFINES $IGNORE_TIME"
1768    
1769    if test "x$EMBED_SRC" = xt ; then
1770        build_embed_encode
1771    fi
1772    if test "x$EMBED_SRC" = xt ; then
1773        ENABLE="$ENABLE embed_files"
1774    fi
1775    
1776    
1777    printf "\n===  Setting defaults  ===\n"
1778    printf "  Adding MODS directories:  "
1779    for d in $MODS ; do
1780        if test ! -d $d ; then
1781            echo
1782            echo "Error: MODS directory \"$d\" not found!"
1783            exit 1
1784      else      else
1785          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          printf " $d"
1786              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then          SOURCEDIRS="$SOURCEDIRS $d"
1787                  ROOTDIR=$d          INCLUDEDIRS="$INCLUDEDIRS $d"
                 echo -n "Warning:  ROOTDIR was not specified but there appears to be"  
                 echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."  
                 break  
             fi  
         done  
1788      fi      fi
1789  fi  done
1790  if test "x${ROOTDIR}" = x ; then  echo
1791      echo "Error: Cannot determine ROOTDIR for MITgcm code."  
1792      echo "  Please specify a ROOTDIR using either an options "  if test "x${PLATFORM}" = x ; then
1793      echo "  file or a command-line option."      PLATFORM=$p_PLATFORM
     exit 1  
 fi  
 if test ! -d ${ROOTDIR} ; then  
     echo "Error: the specified ROOTDIR (\"$ROOTDIR\") does not exist!"  
     exit 1  
1794  fi  fi
1795    
1796  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1797      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1798        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1799          EXEDIR=../exe          EXEDIR=../exe
1800      else      else
1801          EXEDIR=.          EXEDIR=.
# Line 430  if test "x${TOOLSDIR}" = x ; then Line 1810  if test "x${TOOLSDIR}" = x ; then
1810      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1811  fi  fi
1812  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1813      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1814      exit 1      exit 1
1815  fi  fi
1816    if test "x$S64" = x ; then
1817        echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1818        RETVAL=$?
1819        if test "x${RETVAL}" = x0 ; then
1820            S64='$(TOOLSDIR)/set64bitConst.sh'
1821        else
1822            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1823            RETVAL=$?
1824            if test "x${RETVAL}" = x0 ; then
1825                S64='$(TOOLSDIR)/set64bitConst.csh'
1826            else
1827                cat <<EOF
1828    
1829    ERROR: neither of the two default scripts:
1830    
1831        ${TOOLSDIR}/set64bitConst.sh
1832        ${TOOLSDIR}/set64bitConst.csh
1833    
1834      are working so please check paths or specify (with \$S64) a
1835      working version of this script.
1836    
1837    EOF
1838                exit 1
1839            fi
1840        fi
1841    fi
1842    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1843    
1844  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1845    
# Line 441  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 1848  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1848  #  they appear as regular source code  #  they appear as regular source code
1849  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1850      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1851      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
1852      RETVAL=$?      RETVAL=$?
1853      if test "x${RETVAL}" == "x0" ; then      if test "x${RETVAL}" = x0 ; then
1854          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1855      else      else
1856          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1857          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1858          exit 1          exit 1
1859      fi      fi
1860  fi  fi
1861    
1862  echo $'\n'"===  Determining package settings  ==="  #same for pkg/exch2 and pkg/regrid
1863    for pdir in exch2 regrid ; do
1864        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1865            echo "  Making source files in pkg/${pdir} from templates"
1866            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1
1867            RETVAL=$?
1868            if test "x${RETVAL}" = x0 ; then
1869                rm -f make_${pdir}.errors
1870            else
1871                echo "Error: problem encountered while building source files in pkg/${pdir}:"
1872                cat make_${pdir}.errors 1>&2
1873                exit 1
1874            fi
1875        fi
1876    done
1877    
1878    printf "\n===  Determining package settings  ===\n"
1879  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1880      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
1881      if test -r $tmp ; then      if test -r $tmp ; then
# Line 471  echo "  getting package dependency info Line 1894  echo "  getting package dependency info
1894  #  Strip the comments and then convert the dependency file into  #  Strip the comments and then convert the dependency file into
1895  #  two arrays: PNAME, DNAME  #  two arrays: PNAME, DNAME
1896  cat $PDEPEND | sed -e 's/#.*$//g' \  cat $PDEPEND | sed -e 's/#.*$//g' \
1897      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
1898      > ./.pd_tmp      > ./.pd_tmp
1899  RETVAL=$?  RETVAL=$?
1900  if test ! "x${RETVAL}" = x0 ; then  if test ! "x${RETVAL}" = x0 ; then
1901      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
1902      exit 1      exit 1
1903  fi  fi
1904  source ./.pd_tmp  . ./.pd_tmp
1905  rm -f ./.pd_tmp  rm -f ./.pd_tmp
1906    
1907  echo  -n "  checking default package list:  "  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1908    #  file should eventually be added so that, for convenience, one can
1909    #  specify groups of packages using names like "ocean" and "atmosphere".
1910    echo "  checking default package list:  "
1911    if test "x${PDEFAULT}" = x ; then
1912        for i in "." $MODS ; do
1913            if test -r $i"/packages.conf" ; then
1914                    PDEFAULT=$i"/packages.conf"
1915                    break
1916            fi
1917        done
1918    fi
1919  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1920      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1921  fi  fi
1922  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1923      echo "default packages file disabled"      echo "    default packages file disabled"
1924  else  else
1925      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1926          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1927      else      else
1928          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1929          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1930          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1931          RETVAL=$?          RETVAL=$?
1932          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1933              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1934              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1935              exit 1              exit 1
1936          fi          fi
1937          for i in $def ; do          for i in $def ; do
1938              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1939          done          done
1940          echo "    packages are:  $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1941            RET=1
1942            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1943            echo "    after group expansion packages are:  $PACKAGES"
1944      fi      fi
1945  fi  fi
1946    
1947  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1948    for i in $PACKAGES ; do
1949        echo $i >> ./.tmp_pack
1950    done
1951    for i in `grep  "-" ./.tmp_pack` ; do
1952        j=`echo $i | sed 's/[-]//'`
1953        DISABLE="$DISABLE $j"
1954    done
1955  pack=  pack=
1956  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1957      addit="t"      addit="t"
# Line 523  for p in $PACKAGES ; do Line 1966  for p in $PACKAGES ; do
1966  done  done
1967  PACKAGES="$pack"  PACKAGES="$pack"
1968  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1969  rm -f ./.tmp_pack  echo "" > ./.tmp_pack
1970  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1971    # Test if each explicitly referenced package exists
1972  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1973      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1974        if test ! -d "$ROOTDIR/pkg/$j" ; then
1975          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1976          exit 1          exit 1
1977      fi      fi
1978      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1979  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1980  PACKAGES=  PACKAGES=
1981  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1982      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1983  done  done
1984    rm -f ./.tmp_pack
1985  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1986    
1987    #  Check for package MNC: if NetCDF is available, then build the MNC
1988    #  template files ; otherwise, delete mnc from the list of packages.
1989    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1990    RETVAL=$?
1991    if test "x$RETVAL" = x0 ; then
1992        if test "x$HAVE_NETCDF" != xt ; then
1993            cat <<EOF
1994    
1995    *********************************************************************
1996    WARNING: the "mnc" package was enabled but tests failed to compile
1997      NetCDF applications.  Please check that:
1998    
1999      1) NetCDF is correctly installed for this compiler and
2000      2) the LIBS variable (within the "optfile") specifies the correct
2001           NetCDF library to link against.
2002    
2003      Due to this failure, the "mnc" package is now DISABLED.
2004    *********************************************************************
2005    
2006    EOF
2007            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2008            DISABLE="$DISABLE mnc"
2009        else
2010            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2011            RETVAL=$?
2012            if test "x${RETVAL}" = x0 ; then
2013                rm -f make_mnc.errors
2014            else
2015                echo "Error: problem encountered while building source files in pkg/mnc:"
2016                cat make_mnc.errors 1>&2
2017                exit 1
2018            fi
2019        fi
2020    fi
2021    
2022    #  Check for package PROFILES: if NetCDF is not available,
2023    #  then delete profiles from the list of available packages.
2024    echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1
2025    RETVAL=$?
2026    if test "x$RETVAL" = x0 ; then
2027        if test "x$HAVE_NETCDF" != xt ; then
2028            cat <<EOF
2029    
2030    *********************************************************************
2031    WARNING: the "profiles" package was enabled but tests failed to
2032      compile NetCDF applications.  Please check that:
2033    
2034      1) NetCDF is correctly installed for this compiler and
2035      2) the LIBS variable (within the "optfile") specifies the correct
2036           NetCDF library to link against.
2037    
2038      Due to this failure, the "profiles" package is now DISABLED.
2039    *********************************************************************
2040    
2041    EOF
2042            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2043            DISABLE="$DISABLE profiles"
2044        fi
2045    fi
2046    
2047  echo "  applying package dependency rules"  echo "  applying package dependency rules"
2048  ck=  ck=
2049  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
2050      i=0      i=0
2051      rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2052      while test $i -lt $rtot ; do      rtot=$nname
2053        while test $i -le $rtot ; do
2054    
2055          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2056          pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
2057            tmp="pname=\"\$PNAME_$i\""
2058            eval $tmp
2059          pin="f"          pin="f"
2060          for p in $PACKAGES ; do          for p in $PACKAGES ; do
2061              if test "x$p" = "x$pname" ; then              if test "x$p" = "x$pname" ; then
# Line 557  while test "x$ck" != xtt ; do Line 2064  while test "x$ck" != xtt ; do
2064          done          done
2065    
2066          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2067            tmp="dname=\"\$DNAME_$i\""
2068            eval $tmp
2069          plus="-"          plus="-"
2070          echo "${DNAME[$i]}" | grep '^+' > /dev/null 2>&1          echo $dname | grep '^+' > /dev/null 2>&1
2071          RETVAL=$?          RETVAL=$?
2072          if test "x$RETVAL" = x0 ; then          if test "x$RETVAL" = x0 ; then
2073              plus="+"              plus="+"
2074          fi          fi
2075    
2076          #  Is $dname in the current $PACKAGES list?          #  Is $dname in the current $PACKAGES list?
2077          dname=`echo ${DNAME[$i]} | sed -e 's/^[+-]//'`          dname=`echo $dname | sed -e 's/^[+-]//'`
2078          din="f"          din="f"
2079          for p in $PACKAGES ; do          for p in $PACKAGES ; do
2080              if test "x$p" = "x$dname" ; then              if test "x$p" = "x$dname" ; then
# Line 575  while test "x$ck" != xtt ; do Line 2084  while test "x$ck" != xtt ; do
2084    
2085          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2086          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2087                #echo "   " $pname ": need to add :" $dname
2088              in_dis="f"              in_dis="f"
2089              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2090                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 599  while test "x$ck" != xtt ; do Line 2109  while test "x$ck" != xtt ; do
2109              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2110              exit 1              exit 1
2111          fi          fi
2112          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2113            #i=$(( $i + 1 ))
2114      done      done
2115      ck=$ck"t"      ck=$ck"t"
2116  done  done
# Line 609  for i in $PACKAGES ; do Line 2120  for i in $PACKAGES ; do
2120      if test -d $adr ; then      if test -d $adr ; then
2121          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
2122          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
2123            if test "x$i" = xautodiff ; then
2124                AUTODIFF_PKG_USED=t
2125            fi
2126      else      else
2127          echo "Error: the directory \"$adr\" for package $i doesn't exist"          echo "Error: the directory \"$adr\" for package $i doesn't exist"
2128          exit 1          exit 1
2129      fi      fi
2130  done  done
2131    
2132  #  This is compatible with the old genmake.  The "DISABLE_*" flags  # Create a list of #define and #undef to enable/disable packages
2133  #  need to be replaced by the "ALLOW_*" flags set below.  PACKAGES_DOT_H=PACKAGES_CONFIG.h
 #  
 # echo -n "  Setting package-specific CPP flags:  "  
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
 echo "  Setting package-specific CPP flags in CPP_OPTIONS.h:"  
 CPP_OPTIONS=  
 spaths=". $SOURCEDIRS"  
 for i in $spaths ; do  
     try="$i/CPP_OPTIONS.h"  
     #  echo -n "    trying $try : "  
     if test -f $try -a -r $try ; then  
         echo "    found CPP_OPTIONS=\"$try\""  
         CPP_OPTIONS="$try"  
         if test "x$i" != "x." ; then  
             cp -f $CPP_OPTIONS .  
         fi  
         break  
     fi  
 done  
 if test "x$CPP_OPTIONS" = x ; then  
     echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"  
     exit 1  
 fi  
 if test -e CPP_OPTIONS.h ; then  
     if test ! -e CPP_OPTIONS.h.bak ; then  
         cp -f CPP_OPTIONS.h CPP_OPTIONS.h.bak  
     fi  
     cat CPP_OPTIONS.h \  
         | awk 'BEGIN{p=1;} ($1=="C===" && $2=="GENMAKE"){p=0;} {if (p==1) print $0}' \  
         > CPP_OPTIONS.h.tmp  
 fi  
 cat <<EOF >>CPP_OPTIONS.h.tmp  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please edit  
 C  them only if you know what you're doing.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 C  Packages disabled by genmake:  
 EOF  
2134  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2135  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2136  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2137  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2138  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2139  all_pack=  all_pack=
2140    DISABLED_PACKAGES=
2141  for n in $names ; do  for n in $names ; do
2142      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2143          has_pack="f"          has_pack="f"
# Line 686  for n in $names ; do Line 2148  for n in $names ; do
2148              fi              fi
2149          done          done
2150          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2151              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2152              echo "#undef $undef" >> CPP_OPTIONS.h.tmp              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 generic_advdiff)  
                     DEFINES="$DEFINES -DDISABLE_GENERIC_ADVDIFF"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
2153          fi          fi
2154      fi      fi
2155  done  done
2156  cat <<EOF >>CPP_OPTIONS.h.tmp  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2157  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2158      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2159      echo "#define $def" >> CPP_OPTIONS.h.tmp      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2160    #eh3 DEFINES="$DEFINES -D$def"
2161    
2162  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2163      case $i in      case $i in
2164          aim_v23)          aim_v23)
2165              echo "#define   ALLOW_AIM" >> CPP_OPTIONS.h.tmp              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2166                echo "Warning: ALLOW_AIM is set to enable aim_v23."
2167              ;;              ;;
2168      esac      esac
2169  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2170    
2171  done  done
 mv -f CPP_OPTIONS.h.tmp CPP_OPTIONS.h  
2172    
2173  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
2174  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2175  STANDARDDIRS=${STANDARDDIRS:-"eesupp model"}  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2176  for d in $STANDARDDIRS ; do      STANDARDDIRS="eesupp model"
2177      adr="$ROOTDIR/$d/src"  fi
2178      if test ! -d $adr ; then  if test "x$STANDARDDIRS" != x ; then
2179          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""      for d in $STANDARDDIRS ; do
2180          echo "  is correct and that you correctly specified the STANDARDDIRS option"          adr="$ROOTDIR/$d/src"
2181          exit 1          if test ! -d $adr ; then
2182      else              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2183          SOURCEDIRS="$SOURCEDIRS $adr"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2184      fi              exit 1
2185      adr="$ROOTDIR/$d/inc"          else
2186      if test ! -d $adr ; then              SOURCEDIRS="$SOURCEDIRS $adr"
2187          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          fi
2188          echo "  is correct and that you correctly specified the STANDARDDIRS option"          adr="$ROOTDIR/$d/inc"
2189          exit 1          if test ! -d $adr ; then
2190      else              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2191          INCLUDEDIRS="$INCLUDEDIRS $adr"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2192                exit 1
2193            else
2194                INCLUDEDIRS="$INCLUDEDIRS $adr"
2195            fi
2196        done
2197    fi
2198    
2199    echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2200    echo "    of \"#define \"-type statements that are no longer allowed:"
2201    CPP_OPTIONS=
2202    CPP_EEOPTIONS=
2203    spaths=". $INCLUDEDIRS"
2204    names=`ls -1 "$ROOTDIR/pkg"`
2205    for i in $spaths ; do
2206        try="$i/CPP_OPTIONS.h"
2207        if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2208            echo "    found CPP_OPTIONS=\"$try\""
2209            CPP_OPTIONS="$try"
2210            # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2211            for n in $names ; do
2212                test_for_package_in_cpp_options $CPP_OPTIONS $n
2213            done
2214        fi
2215        try="$i/CPP_EEOPTIONS.h"
2216        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2217            echo "    found CPP_EEOPTIONS=\"$try\""
2218            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2219    #**** not yet enabled ****
2220    #        test_for_mpi_in_cpp_eeoptions $try
2221    #**** not yet enabled ****
2222            CPP_EEOPTIONS="$try"
2223      fi      fi
2224  done  done
2225    if test "x$CPP_OPTIONS" = x ; then
2226        echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2227        exit 1
2228    fi
2229    
2230    #  Here, we build the list of files to be "run through" the adjoint
2231    #  compiler.
2232    if test -f ./adSrcFiles.tmp ; then
2233        rm -f ./adSrcFiles.tmp
2234    fi
2235    echo "  Creating the list of files for the adjoint compiler."
2236    for i in $SOURCEDIRS ; do
2237        list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2238        for j in $list_files ; do
2239            cat $i/$j >> adSrcFiles.tmp
2240        done
2241    done
2242    if test ! "x"$FS = "x.f" ; then
2243        cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2244        mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2245    fi
2246    
2247  echo $'\n'"===  Creating the Makefile  ==="  echo
2248    echo "===  Creating the Makefile  ==="
2249  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2250  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2251      if test -d $i ; then      if test ! -d $i ; then
         INCLUDES="$INCLUDES -I$i"  
     else  
2252          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2253      fi      fi
2254  done  done
2255    
2256    if test ! "x$DIVA" = x ; then
2257        echo "  Creating the pseudo-MPI include directory"
2258        INCLUDES="-I./mpi_headers $INCLUDES"
2259        rm -rf ./mpi_headers
2260        mkdir -p ./mpi_headers
2261    
2262        if test "x$MPIINCLUDEDIR" = x ; then
2263            if test "x$MPIHOME" = x ; then
2264                MPIHOME='/usr'
2265            fi
2266            MPIINCLUDEDIR='$MPIHOME/include'
2267        fi
2268        
2269        if test -r $MPIINCLUDEDIR/mpif.h ; then
2270            for i in $MPI_HEADER_FILES; do
2271                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2272            done
2273    
2274            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2275        else
2276            echo " We cannot create a copy of mpif.h!"
2277    #       exit -1
2278        fi
2279    fi
2280    
2281  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2282  rm -rf .links.tmp  rm -rf .links.tmp
2283  mkdir .links.tmp  mkdir .links.tmp
2284    touch .links.tmp/foo
2285    if test ! -r ".links.tmp/foo" ; then
2286        echo
2287        echo "ERROR : something is wrong with your directory permissions or"
2288        echo "   your user file-creation mask (\"umask\") since creating a"
2289        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2290        echo "   not working.  Please try setting your umask to something"
2291        echo "   sane such as:"
2292        echo
2293        echo "      umask 0002"
2294        echo
2295        echo "   and please verify that you have the proper permissions for"
2296        echo "   creating sub-directories and then reading files created"
2297        echo "   within them."
2298        echo
2299        exit 1
2300    fi
2301    rm -f .links.tmp/foo
2302    
2303    if test "x$OPENAD" != x ; then
2304        OAD_DONT_COMPILE="/dev/null"
2305        OAD_DONT_TRANSFORM="/dev/null"
2306        OAD_KEEP_ORIGINAL="/dev/null"
2307        OAD_CB2M_FILES="/dev/null"
2308        echo "  looking for dontCompile file:  "
2309        for i in "." $MODS ; do
2310            if test -r $i"/dontCompile" ; then
2311                OAD_DONT_COMPILE=$i"/dontCompile"
2312                echo "     found $OAD_DONT_COMPILE"
2313                break
2314            fi
2315        done
2316        echo "  looking for dontTransform file:  "
2317        for i in "." $MODS ; do
2318            if test -r $i"/dontTransform" ; then
2319                OAD_DONT_TRANSFORM=$i"/dontTransform"
2320                echo "     found $OAD_DONT_TRANSFORM"
2321                break
2322            fi
2323        done
2324        echo "  looking for keepOriginal file:  "
2325        for i in "." $MODS ; do
2326            if test -r $i"/keepOriginal" ; then
2327                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2328                echo "     found $OAD_KEEP_ORIGINAL"
2329                break
2330            fi
2331        done
2332        echo "  looking for cb2mFiles:  "
2333        for i in "." $MODS ; do
2334            if test -r $i"/cb2mFiles" ; then
2335                OAD_CB2M_FILES=$i"/cb2mFiles"
2336                echo "     found $OAD_CB2M_FILES"
2337                break
2338            fi
2339        done
2340        echo "   OpenAD exceptions:  "
2341    fi
2342    
2343  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2344  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2345  echo -n 'SRCFILES = ' > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2346  echo -n 'CSRCFILES = ' > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2347  echo -n 'HEADERFILES = ' > hlist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2348  alldirs=". $SOURCEDIRS $INCLUDEDIRS"  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2349    printf 'H_SRC_FILES = '   > hsrclist.tmp
2350    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2351    alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2352  for d in $alldirs ; do  for d in $alldirs ; do
2353      deplist=      deplist=
2354      sfiles=`( cd $d; echo *.[h,c,F] )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2355        sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2356        if test "x$OPENAD" != x ; then
2357            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2358        fi
2359      for sf in $sfiles ; do      for sf in $sfiles ; do
2360          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2361              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2362                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  ignore_f=f
2363                  touch .links.tmp/$sf                  case $d/$sf in
2364                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2365                  case $extn in                          ignore_f=t
2366                      F)                          ;;
2367                          echo    " \\"  >> srclist.inc                    ./AD_CONFIG.h)
2368                          echo -n " $sf" >> srclist.inc                          ignore_f=t
2369                            ;;
2370                      ./FC_NAMEMANGLE.h)
2371                            ignore_f=t
2372                            ;;
2373                      ./BUILD_INFO.h)
2374                            ignore_f=t
2375                            ;;
2376                      ./EMBEDDED_FILES.h)
2377                            ignore_f=t
2378                            ;;
2379                      *)
2380                            #  For the local directory *ONLY*,
2381                            #  ignore all soft-links
2382                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2383                                ignore_f=t
2384                            else
2385                                touch .links.tmp/$sf
2386                                deplist="$deplist $sf"
2387                            fi
2388                            ;;
2389                    esac
2390                    if test "x$ignore_f" = xf ; then
2391                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2392                        case $extn in
2393                          F)
2394                            echo    " \\"  >> F77srclist.tmp
2395                            printf " $sf" >> F77srclist.tmp
2396                            if test "x$OPENAD" != x ; then
2397                                basename=${sf%%.F}
2398                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2399                                if test -z "$isAD" ; then
2400                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2401                                    if test -z "$toBeIgnored" ; then
2402                                        echo    " \\"  >> nonADF77srclist.tmp
2403                                        printf " $sf" >> nonADF77srclist.tmp
2404                                    else
2405                                        echo "    not to be compiled   :  $sf"
2406                                    fi
2407                                else # file is initially listed as an AD file we want to exclude it
2408                                     # or we want to retain the untransformed version
2409                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2410                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2411                                    if test -n "$notToBeTransformed"; then
2412                                        echo "    not to be transformed:  $sf"
2413                                    fi
2414                                    if test -n "$untransformedVersionToBeKept" ; then
2415                                        echo "    original to be kept  :  $sf"
2416                                    fi    
2417                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2418                                        echo    " \\"  >> nonADF77srclist.tmp
2419                                        printf " $sf" >> nonADF77srclist.tmp
2420                                    fi
2421                                fi
2422                            fi
2423                            ;;
2424                        F90)
2425                            echo    " \\"  >> F90srclist.tmp
2426                            printf " $sf" >> F90srclist.tmp
2427                          ;;                          ;;
2428                      c)                      c)
2429                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2430                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2431                          ;;                          ;;
2432                      h)                      h)
2433                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2434                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2435                            ;;
2436                        flow)
2437                            echo    " \\"  >> ad_flow_files.tmp
2438                            printf " $sf" >> ad_flow_files.tmp
2439                          ;;                          ;;
2440                  esac                     esac
2441                    fi
2442              fi              fi
2443          fi          fi
2444      done      done
2445      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2446          echo $'\n'"#  These files are linked from $d" >> srclinks.tmp        if test "$d" != "." ; then
2447            echo "" >> srclinks.tmp
2448            echo "#  These files are linked from $d" >> srclinks.tmp
2449          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2450          echo $'\t$(LN) '$d'/$@ $@' >> srclinks.tmp  # We need to make sure that the link isn't already there.
2451    # This may happen when make thinks that a header file has to be "remade"
2452    # because a module it depends on has changed.  In this case we do nothing.
2453            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2454          fi
2455      fi      fi
2456  done  done
2457  rm -rf .links.tmp  rm -rf .links.tmp
2458  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2459  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2460  echo "" >> hlist.inc  echo "" >> csrclist.tmp
2461    echo "" >> F90srclist.tmp
2462    echo "" >> hsrclist.tmp
2463    echo "" >> ad_flow_files.tmp
2464    
2465  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2466      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
2467  fi  fi
2468  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 816  echo "#    $MACHINE" >> $MAKEFILE Line 2471  echo "#    $MACHINE" >> $MAKEFILE
2471  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2472  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2473  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2474  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
2475  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2476  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2477    
2478    EXE_AD=$EXECUTABLE"_ad"
2479    EXE_FTL=$EXECUTABLE"_ftl"
2480    EXE_SVD=$EXECUTABLE"_svd"
2481    
2482  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2483    #
2484    # OPTFILE="$OPTFILE"
2485  #  #
2486  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2487  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 847  EXEDIR      = ${EXEDIR} Line 2509  EXEDIR      = ${EXEDIR}
2509  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2510  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2511    
2512    #eh3  new defines for the adjoint work
2513    AUTODIFF    = ${ROOTDIR}/pkg/autodiff
2514    EXE_AD      = ${EXE_AD}
2515    EXE_FTL     = ${EXE_FTL}
2516    EXE_SVD     = ${EXE_SVD}
2517    
2518    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2519    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2520    
2521    # These files are created by Makefile
2522    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2523  EOF  EOF
2524    
2525  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2526        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2527    else
2528        echo "EMBEDDED_FILES = " >>$MAKEFILE
2529    fi
2530    
2531    #  Note: figure out some way to add Hyades JAM libraries here
2532  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2533  # Unix ln (link)  # Unix ln (link)
2534  LN = ${LN}  LN = ${LN}
# Line 862  MAKEDEPEND = ${MAKEDEPEND} Line 2540  MAKEDEPEND = ${MAKEDEPEND}
2540  KPP = ${KPP}  KPP = ${KPP}
2541  # Fortran compiler  # Fortran compiler
2542  FC = ${FC}  FC = ${FC}
2543    # Fortran compiler
2544    F90C = ${F90C}
2545    # C compiler
2546    CC = ${CC}
2547  # Link editor  # Link editor
2548  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2549    
2550  # Defines for CPP  # Defines for CPP
2551  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 873  INCLUDES = ${INCLUDES} Line 2555  INCLUDES = ${INCLUDES}
2555  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2556  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2557  # Optim./debug for FC  # Optim./debug for FC
2558  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2559  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2560    # Optim./debug for FC
2561    F90FLAGS = ${F90FLAGS}
2562    F90OPTIM = ${F90OPTIM}
2563    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2564  # Flags for CC  # Flags for CC
2565  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2566  # Files that should not be optimized  # Files that should not be optimized
2567  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2568  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2569  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2570  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2571    # Name of the Mekfile
2572    MAKEFILE=${MAKEFILE}
2573    
2574  EOF  EOF
2575    
2576  cat srclist.inc  >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2577  cat csrclist.inc >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2578  cat hlist.inc >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2579  echo 'F77FILES =  $(SRCFILES:.F=.f)'                    >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2580  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o)' >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2581    cat ad_flow_files.tmp   >> $MAKEFILE
2582  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp  
2583    rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2584    
2585    echo >> $MAKEFILE
2586    
2587    # add definitions for preprocessed sources
2588    # and note that not all systems allow case sensitive extensions
2589    # hence the $FS and $FS90 here.
2590    # for fixed format f90 files we use ff90 or FF90 resp
2591    # but these are not expected to be the original source files
2592    
2593    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2594    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2595    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2596    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2597    echo >> $MAKEFILE
2598    echo '.SUFFIXES:' >> $MAKEFILE
2599    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2600    
2601  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2602    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c  
   
2603  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2604  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2605            @echo Creating \$@ ...
2606          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2607  depend:  depend:
2608          @make links          @make links
2609          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2610            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2611            -rm -f makedepend.out
2612    
2613  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES)  lib: libmitgcmuv.a
2614    
2615  small_f: \$(F77FILES)  libmitgcmuv.a: \$(OBJFILES)
2616            ar rcv libmitgcmuv.a \$(OBJFILES)
2617            ar d   libmitgcmuv.a main.o
2618    
2619    links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2620    
2621    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2622    
2623  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2624          @printf 'running ... '          @printf 'running ... '
2625          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2626    
2627  clean:  clean:
2628          -rm -rf *.o *.f *.p ${RMFILES} work.{pc,pcl}          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2629            -rm -rf *.o
2630            -rm -rf *.$FS *.flowdir
2631            -rm -rf *.f$FS90 *_mod.h *_mod.F90 *.FF90 *.mod-whirl ad_input*
2632            -rm -rf temp.sed
2633  Clean:  Clean:
2634          @make clean          @make clean
2635          @make cleanlinks          @make cleanlinks
2636          -rm -f Makefile.bak          -rm -f \$(SPECIAL_FILES)
2637            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log f90mkdepend.log *.bak
2638            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2639  CLEAN:  CLEAN:
2640          @make Clean          @make Clean
2641          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2642          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2643          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2644          -rm -f \$(EXECUTABLE)          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2645            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2646            -rm -rf mnc_test_*
2647    
2648    #eh3 Makefile: makefile
2649  makefile:  makefile:
2650          ${0} $@          $THIS_SCRIPT $G2ARGS
2651  cleanlinks:  cleanlinks:
2652          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2653    
2654  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are created by make
2655  .F.f:  ${PACKAGES_DOT_H}:
2656            @echo Creating \$@ ...
2657            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2658    AD_CONFIG.h:
2659            @echo Creating \$@ ...
2660            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2661    FC_NAMEMANGLE.h:
2662            @echo Creating \$@ ...
2663            echo "$FC_NAMEMANGLE" > \$@
2664    
2665    BUILD_INFO.h:
2666            @echo Creating \$@ ...
2667    EOF
2668    
2669    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2670    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2671    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2672    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2673    
2674    if test "x$EMBED_SRC" = xt ; then
2675        cat >>$MAKEFILE <<EOF
2676    
2677    decode_files.o : EMBEDDED_FILES.h
2678    
2679    ##  \$(F77_PP_SRC_FILES)
2680    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2681            @echo Creating \$@ ...
2682            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2683            -rm -f all_fF.tar.gz
2684            -gzip all_fF.tar
2685    
2686    EMBEDDED_FILES.h : all_fF.tar.gz
2687            @echo Creating \$@ ...
2688            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2689    
2690    EOF
2691    fi
2692    
2693    cat >>$MAKEFILE <<EOF
2694    
2695    # The normal chain of rules is (  .F - .$FS - .o  )
2696    
2697    ## This nullifies any default implicit rules concerning these two file types:
2698    ## %.o : %.F
2699    
2700    .F.$FS:
2701          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2702  .f.o:  .$FS.o:
2703          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2704    .F90.$FS90:
2705            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2706    .FF90.f$FS90:
2707            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2708    .$FS90.o:
2709            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2710    .f$FS90.o:
2711            cp \$< \$(basename  \$<).f90
2712            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2713  .c.o:  .c.o:
2714          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2715    .flow.flowdir:
2716            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2717    
2718  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2719  .F.p:  .F.p:
2720          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2721  .p.f:  .p.$FS:
2722          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2723    
2724  EOF  EOF
2725    
2726    #=========================================
2727    #===  Automatic Differentiation Rules  ===
2728    #===  for TAMC/TAF  ======================
2729    
2730    if test "x$OPENAD" == x ; then
2731    
2732    cat >>$MAKEFILE <<EOF
2733    
2734    TAMC           = ${TAMC}
2735    TAF            = ${TAF}
2736    
2737    TAF_EXTRA      = ${TAF_EXTRA}
2738    TAMC_EXTRA     = ${TAMC_EXTRA}
2739    
2740    EOF
2741    
2742    ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
2743    ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
2744    ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2745    for i in $ad_vars ; do
2746        name=$i
2747        t1="t2=\$"`echo "$i"`
2748        eval $t1
2749        printf "%-20s = " $name >> $MAKEFILE
2750        echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2751    done
2752    
2753    echo "  Add the source list for AD code generation"
2754    echo >> $MAKEFILE
2755    printf "AD_FILES = " >> $MAKEFILE
2756    AD_FILES=`cat adSrcFiles.tmp`
2757    for i in $AD_FILES ; do
2758        echo    " \\" >> $MAKEFILE
2759        printf " $i" >> $MAKEFILE
2760    done
2761    echo >> $MAKEFILE
2762    rm -f adSrcFiles.tmp
2763    
2764    cat >>$MAKEFILE <<EOF
2765    
2766    # ... AD ...
2767    adall: \$(EXE_AD)
2768    adtaf: ad_taf_output.$FS
2769    adtamc: ad_tamc_output.$FS
2770    
2771    ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2772            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2773            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2774            -rm -f ad_config.template
2775            @make \$(F77_PP_SRC_FILES)
2776            @make \$(FLOFILES)
2777            cat \$(FLOFILES) \$(AD_FILES) > ad_input_code.$FS
2778    
2779    ad_taf_output.$FS: ad_input_code.$FS
2780            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2781            ls -l ad_input_code_ad.$FS
2782            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2783    
2784    adtafonly:
2785            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2786            ls -l ad_input_code_ad.$FS
2787            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2788    
2789    \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2790            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2791    
2792    ad_tamc_output.$FS: ad_input_code.$FS
2793            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2794            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2795    
2796    ad_tamc: ad_tamc_output.o \$(OBJFILES)
2797            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2798    
2799    adonlyfwd:
2800            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2801    
2802    adtrick:
2803            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2804    
2805    # ... FTL ...
2806    ftlall: ftl_taf
2807    ftltaf: ftl_taf_output.$FS
2808    ftltamc: ftl_tamc_output.$FS
2809    
2810    ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2811            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2812            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2813            -rm -f ftl_config.template
2814            @make \$(F77_PP_SRC_FILES)
2815            @make \$(AD_FLOW_FILES)
2816            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2817    
2818    ftl_taf_output.$FS: ftl_input_code.$FS
2819            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2820            ls -l ftl_input_code_ftl.$FS
2821            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2822    
2823    ftltafonly:
2824            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2825            ls -l ftl_input_code_ftl.$FS
2826            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2827    
2828    ftl_taf: ftl_taf_output.o \$(OBJFILES)
2829            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2830    
2831    ftl_tamc_output.$FS: ftl_input_code.$FS
2832            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2833            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2834    
2835    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2836            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2837    
2838    
2839    # ... SVD ...
2840    svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2841            @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2842            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2843    svdall: svd_touch svd_taf
2844    
2845    svd_taf: \$(OBJFILES)
2846            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2847    
2848            @echo "--->>> Only COMPILE svd code! <<<---"
2849            @echo "--->>> Assumes you previously <<<---"
2850            @echo "--->>> did make svdtaf        <<<---"
2851    
2852    svd_touch:
2853            @echo "--->>> Only COMPILE svd code! <<<---"
2854            @echo "--->>> Assumes you previously <<<---"
2855            @echo "--->>> did make svdtaf        <<<---"
2856            touch ad_taf_output.$FS ftl_taf_output.$FS
2857            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2858            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2859            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2860            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2861            -rm -f ftl_config.template
2862    
2863    EOF
2864    
2865    fi
2866    
2867    #===  for OpenAD  ========================
2868    
2869    if test "x$OPENAD" != x ; then
2870    
2871    # ============ begin OpenAD specific section ==============
2872    
2873    cat >>$MAKEFILE <<EOF
2874    
2875    # all the source files linked from the various locations:
2876    ALL_LINKED_FILES= \
2877    \$(F77_SRC_FILES) \
2878    \$(C_SRC_FILES) \
2879    \$(H_SRC_FILES) \
2880    \$(F90_SRC_FILES) \
2881    \$(SPECIAL_FILES)
2882    
2883    ifndef OPENADROOT
2884      \$(error "Error:  environment variable OPENADROOT not defined!")
2885    endif
2886    
2887    ifndef XAIFSCHEMAROOT
2888      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2889    endif
2890    
2891    ifndef XAIFBOOSTERROOT
2892      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2893    endif
2894    
2895    EOF
2896    
2897    echo "  Add the source list for common block to module conversion "
2898    echo >> $MAKEFILE
2899    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2900    for i in `cat ${OAD_CB2M_FILES}` ; do
2901      echo    " \\" >> $MAKEFILE
2902      printf " $i" >> $MAKEFILE
2903    done
2904    echo >> $MAKEFILE
2905    
2906    echo "  Add the source list for AD code generation"
2907    echo >> $MAKEFILE
2908    printf "AD_FILES = " >> $MAKEFILE
2909    for i in `cat ${OAD_CB2M_FILES}` ; do
2910      echo    " \\" >> $MAKEFILE
2911      printf " ${i}_mod.f$FS90" >> $MAKEFILE
2912    done
2913    AD_FILES=`cat adSrcFiles.tmp`
2914    for i in $AD_FILES ; do
2915      basename=${i%%.f}
2916      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
2917      if test -z "$toBeIgnored" ; then
2918        echo    " \\" >> $MAKEFILE
2919        printf " $i" >> $MAKEFILE
2920      fi
2921    done
2922    echo >> $MAKEFILE
2923    rm -f adSrcFiles.tmp
2924    
2925    cat >>$MAKEFILE <<EOF
2926    
2927    adAll: \$(EXE_AD)
2928    .PHONY: adAll
2929    
2930    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
2931    
2932    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
2933    
2934    .PHONY: adDepend
2935    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
2936            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2937            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2938            -rm -f makedepend.out
2939    
2940    OPENAD_SUPPORT_F90_SRC_FILES = \
2941    w2f__types.F90 \
2942    OAD_active.F90 \
2943    OAD_cp.F90 \
2944    OAD_rev.F90 \
2945    OAD_tape.F90        
2946    
2947    OPENAD_SUPPORT_C_SRC_FILES = \
2948    iaddr.c \
2949    timeRatio.c
2950    
2951    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
2952            cat \$^ > \$@
2953    
2954    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
2955            cat \$^ > \$@
2956    
2957    f95_test.out: f95_test_mods.f90 f95_test.f90
2958            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
2959            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
2960    
2961    AD_OBJ_FILES=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) all_mods.xb.x2w.w2f.pp.o  ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.o \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
2962    
2963    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(AD_OBJ_FILES)
2964            @echo Creating \$@ ...
2965            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES) \$(LIBS)
2966    
2967    # makefile debug rule
2968    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
2969    .PHONY: openad
2970    
2971    # create the module files
2972    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
2973            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
2974    
2975    # create the header files
2976    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
2977            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
2978    
2979    # change everybody else to use the new module files:
2980    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
2981            ../OAD_support/cb2mUseModules.bash $< ${MPI}
2982    
2983    # makefile debug rule
2984    small_f: \$(CB2M_F90_PP_SRC_FILES)
2985    .PHONY: small_f
2986    
2987    ad_output.txt: \$(EXE_AD)
2988            @printf 'linking data files ... '
2989            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
2990            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
2991            @printf 'running ... '
2992            @./\$(EXE_AD) > \$@
2993    
2994    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
2995    ad_input_code.f$FS90: ../OAD_support/maxMinDefs.f \$(CB2M_AD_FILES)
2996            cat \$^ > \$@
2997    
2998    # strip all comments and blanks to reduce
2999    # the file size in order to reduce perl's memory requirements
3000    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3001            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3002    
3003    # mfef90 preprocessing
3004    # expand statement functions
3005    # expose mfef90 specific substring handling
3006    # add the w2f__types module
3007    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3008            ./mfef90 -r8 -z -F -N132 \$<
3009            mv \$<.B \$(basename \$<).B
3010            ./whirl2f -openad \$(basename \$<).B
3011            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3012    
3013    # canonicalizer
3014    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3015            ./preProcess.py -H -S \$< -o \$@
3016    
3017    # F -> WHIRL
3018    # note that the canonicalized version cuts off at col 72
3019    # doing this also for string constants which is ok as long
3020    # as we are in fixed mode and cut of exactly there.
3021    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3022    # characters respectively.
3023    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3024            ./mfef90 -r8 -z -F \$<
3025            mv \$<.B \$@
3026    
3027    # WHIRL -> XAIF
3028    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3029            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3030    
3031    # XAIF -> XAIF'
3032    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3033            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3034    
3035    # XAIF' -> WHIRL'
3036    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3037            ./xaif2whirl --debug 1 --structured ad_input_code_sf.w2f.pre.B \$<
3038    
3039    # WHIRL' -> F'
3040    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3041            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3042    
3043    # insert template directives
3044    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3045            ../OAD_support/insertTemplateDir.bash \$< \$@
3046    
3047    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3048    # postprocess F'
3049    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 multi-pp.pl \$(PPEXTRAS:.F=.f)
3050            perl multi-pp.pl -inline=../OAD_support/ad_inline.f \$<
3051            # the postprocessor still gets the name wrong
3052            cat \$<.pp | sed 's/RETURN//' > \$@
3053    
3054    # extract all transformed modules
3055    all_mods.xb.x2w.w2f.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3056            cat \$< | sed -n '/MODULE /,/END MODULE/p' > \$@
3057    
3058    # remove the transformed globals module from the
3059    # transformed ad_input_code file
3060    # and remove for now the duplicate variables
3061    # and fix 2 data statements
3062    ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3063            cat \$< | sed '/MODULE /,/END MODULE/d' | sed '/^      INTEGER(w2f__i4) DOLOOP_UB/d' > \$@
3064    
3065    # setup some links
3066    %.xsd:
3067            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3068    
3069    mfef90:
3070            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3071    
3072    # link the support files:
3073    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3074            \$(LN) ../OAD_support/\$@ .
3075    
3076    whirl2xaif xaif2whirl:
3077            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3078    
3079    %.pl:
3080            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3081    
3082    preProcess.py:
3083            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3084    
3085    whirl2f whirl2f_be:
3086            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3087    
3088    oadDriver:
3089            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3090    
3091    # ============ end OpenAD specific section ==============
3092    
3093    EOF
3094    
3095    fi
3096    
3097    #=========================================
3098    
3099    if test "x$EXEHOOK" != x ; then
3100        printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3101    fi
3102    
3103  echo "  Making list of \"exceptions\" that need \".p\" files"  echo "  Making list of \"exceptions\" that need \".p\" files"
3104  for i in $KPPFILES ; do  for i in $KPPFILES ; do
3105      base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`      base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`
# Line 954  for i in $KPPFILES ; do Line 3107  for i in $KPPFILES ; do
3107      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3108          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3109      fi      fi
3110      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3111  done  done
3112    
3113  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 964  for i in $NOOPTFILES ; do Line 3117  for i in $NOOPTFILES ; do
3117      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3118          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3119      fi      fi
3120      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3121      echo $'\t$(FC) $(FFLAGS) $(NOOPTFLAGS) -c $<' >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3122  done  done
3123    
3124  echo "  Add rules for links"  echo "  Add rules for links"
# Line 973  cat srclinks.tmp >> $MAKEFILE Line 3126  cat srclinks.tmp >> $MAKEFILE
3126  rm -f srclinks.tmp  rm -f srclinks.tmp
3127    
3128  echo "  Adding makedepend marker"  echo "  Adding makedepend marker"
3129  echo $'\n\n'"# DO NOT DELETE" >> $MAKEFILE  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE
3130    
3131    printf "\n===  Done  ===\n"
3132    
3133    # Create special header files
3134    $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3135    if test ! -f $PACKAGES_DOT_H ; then
3136        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3137    else
3138        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
3139        RETVAL=$?
3140        if test "x$RETVAL" = x0 ; then
3141            rm -f $PACKAGES_DOT_H".tmp"
3142        else
3143            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
3144            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3145        fi
3146    fi
3147    if test ! -f AD_CONFIG.h ; then
3148        $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
3149    fi
3150    
3151    
3152  echo $'\n'"===  Done  ==="  #  Write the "state" for future records
3153    if test "x$DUMPSTATE" != xf ; then
3154        printf "" > genmake_state
3155        for i in $gm_state ; do
3156            t1="t2=\$$i"
3157            eval $t1
3158            echo "$i='$t2'" >> genmake_state
3159        done
3160    fi

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