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revision 1.63 by edhill, Fri Jan 23 16:12:45 2004 UTC revision 1.181 by jmc, Fri Jan 2 20:32:21 2009 UTC
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24  }  }
25    
26  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
27  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
29      cpp_options=$1      cpp_options=$1
30      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38  }  }
39    
40  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 37  test_for_string_in_file() { Line 45  test_for_string_in_file() {
45      grep -i "$strng" $file > /dev/null 2>&1      grep -i "$strng" $file > /dev/null 2>&1
46      RETVAL=$?      RETVAL=$?
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          echo -n "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
49          grep -i "$strng" $file          grep -i "$strng" $file
50          return 1          exit 99
51      fi      fi
52      return 0      return 0
53  }  }
# Line 67  expand_pkg_groups() { Line 75  expand_pkg_groups() {
75          done          done
76          PACKAGES=$new_packages          PACKAGES=$new_packages
77          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
78            return $matched
79      else      else
80          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
81      fi      fi
82  }  }
83    
84    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
85    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
86    check_for_broken_Ff()  {
87        #  Do we have defaults for $FS and/or $FS90 ?
88        tfs=f
89        tfs9=f90
90        if test "x$FS" != x ; then
91            tfs="$FS"
92        fi
93        if test "x$FS90" != x ; then
94            tfs9="$FS90"
95        fi
96    
97        #  First check the ability to create a *.F/.f pair.
98        cat <<EOF >> genmake_hello.F
99          program hello
100          write(*,*) 'hi'
101          stop
102          end
103    EOF
104        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
105        RETVAL=$?
106        if test "x$RETVAL" != x0 ; then
107            if test "x$FS" = x ; then
108                FS='for'
109                FS90='fr9'
110                check_for_broken_Ff
111            else
112                cat <<EOF 2>&1
113    ERROR: Your file system cannot distinguish between *.F and *.f files
114      (fails the "cp" test) and this program cannot find a suitable
115      replacement extension.  Please try a different build environment or
116      contact the <MITgcm-support@mitgcm.org> list for help.
117    
118    EOF
119                exit -1
120            fi
121            return
122        fi
123        rm -f genmake_hello.*
124    
125        #  Check the ability of ${MAKE} and ${LN} to use the current set
126        #  of extensions.
127        cat <<EOF >> genmake_hello.F
128          program hello
129          write(*,*) 'hi'
130          stop
131          end
132    EOF
133        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
134        cat <<EOF >> $MAKEFILE
135    .SUFFIXES:
136    .SUFFIXES: .$tfs .F
137    .F.$tfs:
138            $LN \$< \$@
139    EOF
140        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
141        RETVAL=$?
142        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
143            if test "x$FS" = x ; then
144                FS='for'
145                FS90='fr9'
146                check_for_broken_Ff
147            else
148                cat <<EOF 2>&1
149    ERROR: Your file system cannot distinguish between *.F and *.f files
150      (fails the "make/ln" test) and this program cannot find a suitable
151      replacement extension.  Please try a different build environment or
152      contact the <MITgcm-support@mitgcm.org> list for help.
153    
154    EOF
155                exit -1
156                return
157            fi
158        fi
159        rm -f genmake_hello.* $MAKEFILE
160        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
161    
162        #  If we make it here, use the extensions
163        FS=$tfs
164        FS90=$tfs9
165        return
166    }
167    
168    
169    look_for_makedepend()  {
170    
171        #  The "original" makedepend is part of the Imake system that is
172        #  most often distributed with XFree86 or with an XFree86 source
173        #  package.  As a result, many machines (eg. generic Linux) do not
174        #  have a system-default "makedepend" available.  For those
175        #  systems, we have two fall-back options:
176        #
177        #    1) a makedepend implementation shipped with the cyrus-imapd
178        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
179        #
180        #    2) a known-buggy xmakedpend shell script
181        #
182        #  So the choices are, in order:
183        #
184        #    1) use the user-specified program
185        #    2) use a system-wide default
186        #    3) locally build and use the cyrus implementation
187        #    4) fall back to the buggy local xmakedpend script
188        #
189        if test "x${MAKEDEPEND}" = x ; then
190            which makedepend > /dev/null 2>&1
191            RV0=$?
192            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
193            #  echo 'MAKEFILE="'$MAKEFILE'"'
194            cat <<EOF >> $MAKEFILE
195    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
196    #
197    #   Some "makedepend" implementations will die if they cannot
198    #   find a Makefile -- so this file is here to gives them an
199    #   empty one to find and parse.
200    EOF
201            cat <<EOF >> genmake_tc.f
202          program test
203          write(*,*) 'test'
204          stop
205          end
206    EOF
207            makedepend genmake_tc.f > /dev/null 2>&1
208            RV1=$?
209            test -f $MAKEFILE  &&  rm -f $MAKEFILE
210            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
211            if test "x${RV0}${RV1}" = x00 ; then
212                MAKEDEPEND=makedepend
213            else
214                echo "    a system-default makedepend was not found."
215                
216                #  Try to build the cyrus implementation
217                build_cyrus_makedepend
218                RETVAL=$?
219                if test "x$RETVAL" != x0 ; then
220                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
221                fi
222                rm -f ./genmake_cy_md
223            fi
224        else
225            #  echo "MAKEDEPEND=${MAKEDEPEND}"
226            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
227            RETVAL=$?
228            if test x"$RETVAL" = x0 ; then
229                build_cyrus_makedepend
230            fi
231        fi
232    }
233    
234    
235    build_cyrus_makedepend()  {
236        rm -f ./genmake_cy_md
237        (
238            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
239                &&  ./configure > /dev/null 2>&1  \
240                &&  make > /dev/null 2>&1
241            if test -x ./makedepend.exe ; then
242                $LN ./makedepend.exe ./makedepend
243            fi
244            ./makedepend ifparser.c > /dev/null 2>&1  \
245                &&  echo "true"
246        ) > ./genmake_cy_md
247        grep true ./genmake_cy_md > /dev/null 2>&1
248        RETVAL=$?
249        rm -f ./genmake_cy_md
250        if test "x$RETVAL" = x0 ; then
251            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
252            return 0
253        else
254            echo "WARNING: unable to build cyrus-imapd-makedepend"
255            return 1
256        fi
257    }
258    
259    
260    build_embed_encode()
261    {
262        printf "  building the embed-encode utility...  "
263        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265                echo
266                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267                echo
268                EMBED_SRC=f
269                return 1
270            fi
271            clist="cc gcc c89 $CC"
272            for ic in $clist ; do
273                comm="$ic -o encode_files encode_files.c"
274                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275                RETVAL=$?
276                if test "x$RETVAL" = x0 ; then
277                    echo "OK"
278                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279                    return 0
280                fi
281            done
282            echo
283            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
284            echo "      so it has been disabled"
285            echo
286            EMBED_SRC=f
287            return 1
288        fi
289        echo "OK"
290        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291    }
292    
293    
294  # Guess possible config options for this host  # Guess possible config options for this host
295  find_possible_configs()  {  find_possible_configs()  {
296    
# Line 80  find_possible_configs()  { Line 299  find_possible_configs()  {
299      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
300      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
301      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
302      PLATFORM=$tmp2      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
303        PLATFORM=$tmp3
304        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
305      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
306      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
307            
# Line 100  find_possible_configs()  { Line 321  find_possible_configs()  {
321          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
322      fi      fi
323    
324      # makedepend is not always available      look_for_makedepend
325      if test "x${MAKEDEPEND}" = x ; then  
326        which makedepend >& /dev/null      #================================================================
327        RETVAL=$?      #  look for possible C compilers
328        if test "x${RETVAL}" = x1 ; then      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329           echo "    makedepend was not found. Using xmakedpend instead."      p_CC=
330           MAKEDEPEND='$(TOOLSDIR)/xmakedepend'      for c in $tmp ; do
331        fi          rm -f ./genmake_hello.c  ./genmake_hello
332            cat >> genmake_hello.c << EOF
333    #include <stdio.h>
334    int main(int argc, char **argv) {
335      printf("Hello!\n");
336      return 0;
337    }
338    EOF
339            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
340            RETVAL=$?
341            if test "x${RETVAL}" = x0 ; then
342                p_CC="$p_CC $c"
343            fi
344        done
345        rm -f ./genmake_hello.c ./genmake_hello
346        if test "x${p_CC}" = x ; then
347            cat 1>&2 <<EOF
348    
349    Error: No C compilers were found in your path.  Please specify one using:
350    
351        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
352        2) the CC or MITGCM_CC environment variables.
353    
354    EOF
355            exit 1
356        else
357            echo "  The possible C compilers found in your path are:"
358            echo "   "$p_CC
359            if test "x$CC" = x ; then
360                CC=`echo $p_CC | $AWK '{print $1}'`
361                echo "  Setting C compiler to: "$CC
362            fi
363      fi      fi
364    
365      # look for possible fortran compilers      #================================================================
366      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      #  look for possible FORTRAN compilers
367        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 136  Error: No Fortran compilers were found i Line 389  Error: No Fortran compilers were found i
389    
390      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
391      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
392      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
393    
394  EOF  EOF
395          exit 1          exit 1
396      else      else
397          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
398          echo "   "$p_FC          echo "   "$p_FC
         if test "x$FC" = x ; then  
             FC=`echo $p_FC | $AWK '{print $1}'`  
         fi  
399      fi      fi
400    
401      for i in $p_FC ; do      #  Use the first of the compilers found in the current PATH
402          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i      #  that has a correctly-named optfile
403          if test -r $p_OF ; then      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
404              OPTFILE=$p_OF          for i in $p_FC ; do
405              echo "  The options file:  $p_OF"              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
406              echo "    appears to match so we'll use it."              if test -r $OPTFILE ; then
407              break                  echo "  Setting OPTFILE to: "$OPTFILE
408          fi                  break
409      done              fi
410            done
411        fi
412    
413        if test "x$OPTFILE" = x ; then
414            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
415            if test ! -r $OPTFILE ; then
416                 echo "  I looked for the file "$OPTFILE" but did not find it"
417            fi
418        fi
419    #    echo "  The options file:  $p_OF"
420    #    echo "    appears to match so we'll use it."
421    #   for i in $p_FC ; do
422    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
423    #if test -r $p_OF ; then
424    #    OPTFILE=$p_OF
425    #    echo "  The options file:  $p_OF"
426    #    echo "    appears to match so we'll use it."
427    #    break
428    #fi
429    #   done
430      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
431          cat 1>&2 <<EOF          cat 1>&2 <<EOF
432    
# Line 215  get_pdepend_list()  { Line 485  get_pdepend_list()  {
485      . ./.pd_tmp      . ./.pd_tmp
486      rm -f ./.pd_tmp      rm -f ./.pd_tmp
487    
488      echo -n "PNAME = "${}      printf "PNAME = "${}
489  }  }
490    
491    
# Line 229  Usage: "$0" [OPTIONS] Line 499  Usage: "$0" [OPTIONS]
499      -help | --help | -h | --h      -help | --help | -h | --h
500            Print this help message and exit.            Print this help message and exit.
501    
502        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
503          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
504              Use "NAME" as the adoptfile.  By default, the file at
505              "tools/adjoint_options/adjoint_default" will be used.
506    
507      -nooptfile | --nooptfile      -nooptfile | --nooptfile
508        -optfile NAME | --optfile NAME | -of NAME | --of NAME        -optfile NAME | --optfile NAME | -of NAME | --of NAME
509        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
# Line 253  Usage: "$0" [OPTIONS] Line 528  Usage: "$0" [OPTIONS]
528        --makefile=NAME | -mf=NAME        --makefile=NAME | -mf=NAME
529            Call the makefile "NAME".  The default is "Makefile".            Call the makefile "NAME".  The default is "Makefile".
530    
531        -makedepend NAME | -md NAME
532          --makedepend=NAME | -md=NAME
533              Use "NAME" for the MAKEDEPEND program.
534    
535      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
536        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
537            Specify the location of the MITgcm ROOTDIR as "NAME".            Specify the location of the MITgcm ROOTDIR as "NAME".
# Line 289  Usage: "$0" [OPTIONS] Line 568  Usage: "$0" [OPTIONS]
568            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
569            "usual suspects" such as g77, f77, etc.            "usual suspects" such as g77, f77, etc.
570    
571        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
572              Use "NAME" as the C compiler.  By default, genmake
573              will search for a working compiler by trying a list of
574              "usual suspects" such as gcc, c89, cc, etc.
575    
576      -[no]ieee | --[no]ieee      -[no]ieee | --[no]ieee
577            Do or don't use IEEE numerics.  Note that this option            Do or don't use IEEE numerics.  Note that this option
578            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
579            is being used.            is being used.
580    
581        -ignoretime | -ignore_time | --ignoretime | --ignore_time
582              Ignore all the "wall clock" routines entirely.  This will
583              not in any way hurt the model results -- it simply means
584              that the code that checks how long the model spends in
585              various routines will give junk values.
586    
587        -ts | --ts
588              Produce timing information per timestep
589        -papis | --papis
590              Produce summary MFlop/s (and IPC) with PAPI per timestep
591        -pcls | --pcls
592              Produce summary MFlop/s etc. with PCL per timestep
593        -foolad | --foolad
594              Fool the AD code generator
595        -papi | --papi
596              Performance analysis with PAPI
597        -pcl | --pcl
598              Performance analysis with PCL
599        -hpmt | --hpmt
600              Performance analysis with the HPM Toolkit
601    
602        -gsl | --gsl
603              Use GSL to control floating point rounding and precision
604        -devel | --devel
605              Add additional warning and debugging flags for development
606    
607        -mpi | --mpi
608              Include MPI header files and link to MPI libraries
609        -mpi=PATH | --mpi=PATH
610              Include MPI header files and link to MPI libraries using MPI_ROOT
611              set to PATH. i.e. Include files from \$PATH/include, link to libraries
612              from \$PATH/lib and use binaries from \$PATH/bin.
613    
614        -es | --es | -embed-source | --embed-source
615              Embed a tarball containing the full source code
616              (including the Makefile, etc.) used to build the
617              executable [off by default]
618    
619        -bash NAME
620              Explicitly specify the Bourne or BASH shell to use
621    
622    While it is most often a single word, the "NAME" variables specified    While it is most often a single word, the "NAME" variables specified
623    above can in many cases be a space-delimited string such as:    above can in many cases be a space-delimited string such as:
624    
# Line 314  EOF Line 639  EOF
639    
640  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
641  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
642    
643        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
644        if test ! "x$FC_NAMEMANGLE" = x ; then
645            return 0
646        fi
647    
648      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
649            
650      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
# Line 331  WARNING: Please contact <MITgcm-support@ Line 662  WARNING: Please contact <MITgcm-support@
662  EOF  EOF
663          return 1          return 1
664      fi      fi
665      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
666      RETVAL=$?      RETVAL=$?
667      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
668          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 343  WARNING: Please contact <MITgcm-support@ Line 674  WARNING: Please contact <MITgcm-support@
674  EOF  EOF
675          return 1          return 1
676      fi      fi
677      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
678        subroutine tcall( string )        subroutine tcall( string )
679        character*(*) string        character*(*) string
680        call tsub( string )        call tsub( string )
681        end        end
682  EOF  EOF
683      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
684      RETVAL=$?      RETVAL=$?
685      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
686          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 361  WARNING: Please contact <MITgcm-support@ Line 692  WARNING: Please contact <MITgcm-support@
692  EOF  EOF
693          return 1          return 1
694      fi      fi
695      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
696      RETVAL=$?      RETVAL=$?
697      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
698          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 415  void FC_NAMEMANGLE(cloc) ( double *curti Line 746  void FC_NAMEMANGLE(cloc) ( double *curti
746   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
747  }  }
748  EOF  EOF
749      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
750        echo $COMM >> genmake_warnings
751        $COMM >> genmake_warnings 2>&1
752      RET_C=$?      RET_C=$?
753      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
754        program hello        program hello
755        Real*8 wtime        REAL*8 wtime
756        external cloc        external cloc
757        call cloc(wtime)        call cloc(wtime)
758        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
759        end program hello        end
760  EOF  EOF
761      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
762        echo $COMM >> genmake_warnings
763        $COMM >> genmake_warnings 2>&1
764      RET_F=$?      RET_F=$?
765      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
766      RETVAL=$?      RETVAL=$?
767      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
768          HAVE_CLOC=t          HAVE_CLOC=t
# Line 437  EOF Line 772  EOF
772  }  }
773    
774    
775    check_HAVE_SIGREG()  {
776        if test ! "x$HAVE_SIGREG" = x ; then
777            return
778        fi
779        get_fortran_c_namemangling
780        cat <<EOF > genmake_tc_1.c
781    $FC_NAMEMANGLE
782    #include <stdlib.h>
783    #include <stdio.h>
784    #include <signal.h>
785    #include <errno.h>
786    #include <ucontext.h>
787    
788    int * ip;
789    
790    static void killhandler(
791        unsigned int sn, siginfo_t  si, struct ucontext *sc )
792    {
793        *ip = *ip + 1;
794        return;
795    }
796    
797    void FC_NAMEMANGLE(sigreg) (int * aip)
798    {
799        struct sigaction s;
800        ip = aip;
801        s.sa_flags = SA_SIGINFO;
802        s.sa_sigaction = (void *)killhandler;
803        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
804            printf("Sigaction returned error = %d\n", errno);
805            exit(0);
806        }
807        return;
808    }
809    EOF
810        COMM="$CC $CFLAGS -c genmake_tc_1.c"
811        echo $COMM >> genmake_warnings
812        $COMM >> genmake_warnings 2>&1
813        RET_C=$?
814        cat <<EOF > genmake_tc_2.$FS
815          program hello
816          integer anint
817          common /iv/ anint
818          external sigreg
819          call sigreg(anint)
820          end
821    EOF
822        echo >> genmake_warnings
823        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
824        cat genmake_tc_2.$FS >> genmake_warnings
825        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
826        echo $COMM >> genmake_warnings
827        $COMM >> genmake_warnings 2>&1
828        RETVAL=$?
829        if test "x$RETVAL" = x0 ; then
830            HAVE_SIGREG=t
831            DEFINES="$DEFINES -DHAVE_SIGREG"
832        fi
833        rm -f genmake_tc*
834    }
835    
836    
837    check_HAVE_SETRLSTK()  {
838        if test "x$HAVE_SETRLSTK" = xt ; then
839            DEFINES="$DEFINES -DHAVE_SETRLSTK"
840            return
841        fi  
842        if test ! "x$HAVE_SETRLSTK" = x ; then
843            return
844        fi
845        get_fortran_c_namemangling
846        cat <<EOF > genmake_tc_1.c
847    $FC_NAMEMANGLE
848    #include <sys/time.h>
849    #include <sys/resource.h>
850    #include <unistd.h>
851    void FC_NAMEMANGLE(setrlstk) ()
852    {
853        struct rlimit rls;
854        rls.rlim_cur = RLIM_INFINITY;
855        rls.rlim_max = RLIM_INFINITY;
856        setrlimit(RLIMIT_STACK, &rls);
857        return;
858    }
859    EOF
860        COMM="$CC $CFLAGS -c genmake_tc_1.c"
861        echo $COMM >> genmake_warnings
862        $COMM >> genmake_warnings 2>&1
863        RET_C=$?
864        cat <<EOF > genmake_tc_2.$FS
865          program hello
866          external setrlstk
867          call setrlstk()
868          end
869    EOF
870        echo >> genmake_warnings
871        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
872        cat genmake_tc_2.$FS >> genmake_warnings
873        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
874        echo $COMM >> genmake_warnings
875        $COMM >> genmake_warnings 2>&1
876        RETVAL=$?
877        if test "x$RETVAL" = x0 ; then
878            HAVE_SETRLSTK=t
879            DEFINES="$DEFINES -DHAVE_SETRLSTK"
880        fi
881        rm -f genmake_tc*
882    }
883    
884    
885    check_HAVE_STAT()  {
886        get_fortran_c_namemangling
887        cat <<EOF > genmake_tc_1.c
888    $FC_NAMEMANGLE
889    #include <stdio.h>
890    #include <stdlib.h>
891    #include <unistd.h>
892    #include <sys/stat.h>
893    #include <sys/types.h>
894    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
895    {
896        char name[512];
897        struct stat astat;
898    
899        name[0] = 'a'; name[1] = '\0';
900        if (! stat(name, &astat))
901            *nbyte = (int)(astat.st_size);
902        else
903            *nbyte = -1;
904    }
905    EOF
906        COMM="$CC $CFLAGS -c genmake_tc_1.c"
907        echo $COMM >> genmake_warnings
908        $COMM >> genmake_tc.log 2>&1
909        RET_C=$?
910        cat <<EOF > genmake_tc_2.$FS
911          program hello
912          integer nbyte
913          call tfsize(nbyte)
914          print *," HELLO WORLD", nbyte
915          end
916    EOF
917        echo >> genmake_warnings
918        echo "running: check_HAVE_STAT()" >> genmake_warnings
919        cat genmake_tc_2.$FS >> genmake_warnings
920        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
921        echo $COMM >> genmake_warnings
922        $COMM >> genmake_tc.log 2>&1
923        RETVAL=$?
924        if test "x$RETVAL" = x0 ; then
925            HAVE_STAT=t
926            DEFINES="$DEFINES -DHAVE_STAT"
927        fi
928        rm -f genmake_tc*
929    }
930    
931    
932  check_netcdf_libs()  {  check_netcdf_libs()  {
933        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
934            return
935        fi
936        echo >> genmake_warnings
937        echo "running: check_netcdf_libs()" >> genmake_warnings
938      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
939        program fgennc        program fgennc
940  #include "netcdf.inc"  #include "netcdf.inc"
941    EOF
942        if test ! "x$MPI" = x ; then
943            echo '#include "mpif.h"' >> genmake_tnc.F
944        fi
945        cat <<EOF >> genmake_tnc.F
946        integer iret, ncid, xid        integer iret, ncid, xid
947        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
948        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
# Line 450  check_netcdf_libs()  { Line 952  check_netcdf_libs()  {
952        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
953        end        end
954  EOF  EOF
955      $CPP genmake_tnc.F > genmake_tnc.f  \      echo "===  genmake_tnc.F  ===" > genmake_tnc.log
956          &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1      cat genmake_tnc.F >> genmake_tnc.log
957        echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
958        RET_CPP=f
959        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
960        echo "$COMM" >> genmake_tnc.log
961        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
962        if test "x$RET_CPP" = xf ; then
963            echo "  WARNING: CPP failed to pre-process the netcdf test." \
964                >> genmake_tnc.log
965            echo "    Please check that \$INCLUDES is properly set." \
966                >> genmake_tnc.log
967        fi
968        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
969        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
970        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
971            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
972      RET_COMPILE=$?      RET_COMPILE=$?
973      test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1      cat genmake_tnc.log >> genmake_warnings
974      RETVAL=$?  
975      if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then      #EH3  Remove test program execution for machines that either disallow
976        #EH3  execution or cannot support it (eg. cross-compilers)
977        #EH3
978        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
979        #EH3 RETVAL=$?
980        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
981    
982        if test "x$RET_COMPILE" = x0 ; then
983          HAVE_NETCDF=t          HAVE_NETCDF=t
984      else      else
985            # try again with "-lnetcdf" added to the libs
986            echo "try again with added '-lnetcdf'" > genmake_tnc.log
987            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
988            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
989            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
990            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
991                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
992                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
993            RET_COMPILE=$?
994          cat genmake_tnc.log >> genmake_warnings          cat genmake_tnc.log >> genmake_warnings
995            if test "x$RET_COMPILE" = x0 ; then
996                LIBS="$LIBS -lnetcdf"
997                HAVE_NETCDF=t
998            else
999            # try again with "-lnetcdff" added to the libs
1000                echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1001                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1002                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1003                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1004                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1005                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1006                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1007                RET_COMPILE=$?
1008                cat genmake_tnc.log >> genmake_warnings
1009                if test "x$RET_COMPILE" = x0 ; then
1010                    LIBS="$LIBS -lnetcdff -lnetcdf"
1011                    HAVE_NETCDF=t
1012                fi
1013            fi
1014      fi      fi
1015      rm -f genmake_tnc*      rm -f genmake_tnc*
1016  }  }
1017    
1018    
1019    
1020    ###############################################################################
1021    #   Sequential part of script starts here
1022    ###############################################################################
1023    
1024  #  Set defaults here  #  Set defaults here
1025  COMMANDL="$0 $@"  COMMANDL="$0 $@"
1026    
# Line 471  PLATFORM= Line 1028  PLATFORM=
1028  LN=  LN=
1029  S64=  S64=
1030  KPP=  KPP=
1031  FC=  #FC=
1032  CPP=  #CC=gcc
1033    #CPP=
1034  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
1035  DEFINES=  DEFINES=
1036  PACKAGES=  PACKAGES=
1037  ENABLE=  ENABLE=
1038  DISABLE=  DISABLE=
1039  MAKEFILE=  # MAKEFILE=
1040  MAKEDEPEND=  # MAKEDEPEND=
1041  PDEPEND=  PDEPEND=
1042  DUMPSTATE=t  DUMPSTATE=t
1043  PDEFAULT=  PDEFAULT=
1044  OPTFILE=  OPTFILE=
1045  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1046  FFLAGS=  FFLAGS=
1047  FOPTIM=  FOPTIM=
1048    FEXTRAFLAGS=
1049    USE_EXTENDED_SRC=
1050    EXTENDED_SRC_FLAG=
1051  CFLAGS=  CFLAGS=
1052  KFLAGS1=  KFLAGS1=
1053  KFLAGS2=  KFLAGS2=
1054    #LDADD=
1055  LIBS=  LIBS=
1056  KPPFILES=  KPPFILES=
1057  NOOPTFILES=  NOOPTFILES=
1058  NOOPTFLAGS=  NOOPTFLAGS=
1059    MPI=
1060    MPIPATH=
1061    TS=
1062    PAPIS=
1063    PCLS=
1064    FOOLAD=
1065    PAPI=
1066    PCL=
1067    HPMT=
1068    GSL=
1069    DEVEL=
1070    HAVE_TEST_L=
1071    
1072  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1073  HAVE_SYSTEM=  HAVE_SYSTEM=
1074  HAVE_FDATE=  HAVE_FDATE=
1075  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1076  HAVE_CLOC=  HAVE_CLOC=
1077    # HAVE_SETRLSTK=
1078    HAVE_STAT=
1079  HAVE_NETCDF=  HAVE_NETCDF=
1080    HAVE_ETIME=
1081    IGNORE_TIME=
1082    
1083  MODS=  MODS=
1084  TOOLSDIR=  TOOLSDIR=
# Line 509  SOURCEDIRS= Line 1086  SOURCEDIRS=
1086  INCLUDEDIRS=  INCLUDEDIRS=
1087  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1088    
1089    G2ARGS=
1090    BASH=
1091  PWD=`pwd`  PWD=`pwd`
1092  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1093  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1094  THISHOSTNAME=`hostname`  EMBED_SRC=
1095    THISHOST=`hostname`
1096  THISCWD=`pwd`  THISCWD=`pwd`
1097  THISDATE=`date`  THISDATE=`date`
1098    THISUSER=`echo $USER`
1099    THISVER=
1100  MACHINE=`uname -a`  MACHINE=`uname -a`
1101  EXECUTABLE=  EXECUTABLE=
1102  EXEHOOK=  EXEHOOK=
# Line 524  IEEE= Line 1106  IEEE=
1106  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1107      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1108  fi  fi
1109    FS=
1110    FS90=
1111    
1112  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1113  AD_OPTFILE=  AD_OPTFILE=
# Line 541  TAMC_EXTRA= Line 1125  TAMC_EXTRA=
1125    
1126  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1127  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1128  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"
1129    
1130  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1131  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1132  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1133  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1134  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1135  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
1136    
1137  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1138  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 571  EOF Line 1155  EOF
1155    
1156  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1157  gm_local="genmake_local"  gm_local="genmake_local"
1158  for i in . $MODS ; do  printf "  getting local config information:  "
1159      if test -r $i/$gm_local ; then  if test -f $gm_local ; then
         . $i/$gm_local  
         break  
     fi  
 done  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
1160      echo "using $gm_local"      echo "using $gm_local"
1161      . $gm_local      . $gm_local
1162      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
# Line 587  else Line 1165  else
1165      echo "none found"      echo "none found"
1166  fi  fi
1167    
1168  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1169  #OPTIONS=  #OPTIONS=
1170  #n=0  #n=0
1171  #for i ; do  #for i ; do
# Line 599  fi Line 1177  fi
1177  #done  #done
1178  #parse_options  #parse_options
1179  ac_prev=  ac_prev=
1180  for ac_option ; do  for ac_option in "$@" ; do
1181    
1182        G2ARGS="$G2ARGS \"$ac_option\""
1183    
1184      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1185      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 642  for ac_option ; do Line 1222  for ac_option ; do
1222          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1223              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1224                    
1225            -bash | --bash)
1226                ac_prev=BASH ;;
1227            -bash=* | --bash=*)
1228                BASH=$ac_optarg ;;
1229            
1230            -makedepend | --makedepend | -md | --md)
1231                ac_prev=MAKEDEPEND ;;
1232            -makedepend=* | --makedepend=* | -md=* | --md=*)
1233                MAKEDEPEND=$ac_optarg ;;
1234            
1235          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
1236              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1237          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
# Line 683  for ac_option ; do Line 1273  for ac_option ; do
1273  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1274  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1275  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1276                        
1277            -cc | --cc)
1278                ac_prev=CC ;;
1279            -cc=* | --cc=*)
1280                CC=$ac_optarg ;;
1281            
1282          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1283              ac_prev=FC ;;              ac_prev=FC ;;
1284          -fc=* | --fc=*)          -fc=* | --fc=*)
1285              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1286                    
1287            -fs | --fs)
1288                ac_prev=FS ;;
1289            -fs=* | --fs=*)
1290                FS=$ac_optarg ;;
1291            
1292            -fs90 | --fs90)
1293                ac_prev=FS90 ;;
1294            -fs90=* | --fs90=*)
1295                FS90=$ac_optarg ;;
1296            
1297          -ieee | --ieee)          -ieee | --ieee)
1298              IEEE=true ;;              IEEE=true ;;
1299          -noieee | --noieee)          -noieee | --noieee)
1300              IEEE= ;;              IEEE= ;;
1301    
1302            -ts | --ts)
1303                TS=true ;;
1304            -papis | --papis)
1305                PAPIS=true ;;
1306            -pcls | --pcls)
1307                PCLS=true ;;
1308            -foolad | --foolad)
1309                FOOLAD=true ;;
1310            -papi | --papi)
1311                PAPI=true ;;
1312            -pcl | --pcl)
1313                PCL=true ;;
1314            -hpmt | --hpmt)
1315                HPMT=true ;;
1316    
1317            -gsl | --gsl)
1318                GSL=true ;;
1319    
1320            -devel | --devel)
1321                DEVEL=true ;;
1322    
1323            -mpi | --mpi)
1324                MPI=true ;;
1325            -mpi=* | --mpi=*)
1326                MPIPATH=$ac_optarg
1327                MPI=true ;;
1328                    
1329  #       -jam | --jam)  #       -jam | --jam)
1330  #           JAM=1 ;;  #           JAM=1 ;;
# Line 711  for ac_option ; do Line 1343  for ac_option ; do
1343              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1344          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1345              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1346            
1347            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1348                IGNORE_TIME="-DIGNORE_TIME" ;;
1349    
1350            -es | --es | -embed-source | --embed-source)
1351                EMBED_SRC=t ;;
1352    
1353          -*)          -*)
1354              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 726  for ac_option ; do Line 1364  for ac_option ; do
1364            
1365  done  done
1366    
1367    
1368  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1369      echo      echo
1370      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1371      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1372      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1373      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/devel_HOWTO/"
1374      echo      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1375      echo "  for directions on how to setup and use the new \"genmake2\" input"      echo "WARNING: ignore \"./.genmakerc\" and continue."
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
1376      echo      echo
1377  fi  fi
1378    
1379    #  Find the MITgcm ${ROOTDIR}
1380  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1381      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1382        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1383          ROOTDIR=".."          ROOTDIR=".."
1384      else      else
1385          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1386              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1387                  ROOTDIR=$d                  ROOTDIR=$d
1388                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1389                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1390                  break                  break
1391              fi              fi
# Line 763  if test ! -d ${ROOTDIR} ; then Line 1403  if test ! -d ${ROOTDIR} ; then
1403      exit 1      exit 1
1404  fi  fi
1405    
1406    #  Find the MITgcm ${THISVER}
1407    version_file="${ROOTDIR}/doc/tag-index"
1408    if test -f $version_file ; then
1409        THISVER=`grep '^checkpoint' $version_file | head -1`
1410    #-  remove ./BUILD_INFO.h file if older than version_file
1411        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1412            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1413            rm -f ./BUILD_INFO.h
1414        fi
1415    fi
1416    
1417    if test "x$MAKEFILE" = x ; then
1418        MAKEFILE="Makefile"
1419    fi
1420    
1421  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1422  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1423      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 779  if test "x$OPTFILE" != xNONE ; then Line 1434  if test "x$OPTFILE" != xNONE ; then
1434          . "$OPTFILE"          . "$OPTFILE"
1435          RETVAL=$?          RETVAL=$?
1436          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1437              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1438              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1439              exit 1              exit 1
1440          fi          fi
# Line 806  if test "x${AD_OPTFILE}" != xNONE ; then Line 1461  if test "x${AD_OPTFILE}" != xNONE ; then
1461          . "$AD_OPTFILE"          . "$AD_OPTFILE"
1462          RETVAL=$?          RETVAL=$?
1463          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1464              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1465              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1466              exit 1              exit 1
1467          fi          fi
# Line 819  if test "x${AD_OPTFILE}" != xNONE ; then Line 1474  if test "x${AD_OPTFILE}" != xNONE ; then
1474      fi      fi
1475  fi  fi
1476    
1477  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #====================================================================
1478    #  Set default values if not set by the optfile
1479    #
1480    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1481  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1482    if test ! "x$BASH" = x ; then
1483        # add a trailing space so that it works within the Makefile syntax (see below)
1484        BASH="$BASH "
1485    fi
1486  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1487      cat <<EOF 1>&2      cat <<EOF 1>&2
1488    
# Line 831  Error: no Fortran compiler: please speci Line 1493  Error: no Fortran compiler: please speci
1493  EOF  EOF
1494      exit 1      exit 1
1495  fi  fi
1496    if test "x$CC" = x ; then
1497        CC=cc
1498    #     cat <<EOF 1>&2
1499    # Error: no C compiler: please specify using one of the following:
1500    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1501    #   2) the "-cc=XXX" command-line option
1502    #   3) the "./genmake_local" file
1503    # EOF
1504    #     exit 1
1505    fi
1506  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1507      LINK=$FC      LINK=$FC
1508  fi  fi
# Line 841  if test "x$CPP" = x ; then Line 1513  if test "x$CPP" = x ; then
1513      CPP=cpp      CPP=cpp
1514  fi  fi
1515  #EH3 === UGLY ===  #EH3 === UGLY ===
1516  #  The following an ugly little hack to check for $CPP in /lib/ and it  #  The following is an ugly little hack to check for $CPP in /lib/ and
1517  #  should eventually be replaced with a more general function that  #  it should eventually be replaced with a more general function that
1518  #  searches a combo of the user's path and a list of "usual suspects"  #  searches a combo of the user's path and a list of "usual suspects"
1519  #  to find the correct location for binaries such as $CPP.  #  to find the correct location for binaries such as $CPP.
1520  for i in " " "/lib/" ; do  for i in " " "/lib/" ; do
# Line 865  EOF Line 1537  EOF
1537  else  else
1538      rm -f test_cpp      rm -f test_cpp
1539  fi  fi
1540  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
     MAKEDEPEND=makedepend  
 fi  
1541  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1542      LN="ln -s"      LN="ln -s"
1543  fi  fi
# Line 883  Error: The command "ln -s" failed -- ple Line 1553  Error: The command "ln -s" failed -- ple
1553  EOF  EOF
1554      exit 1      exit 1
1555  fi  fi
1556    test -L genmake_tlink > /dev/null 2>&1
1557    RETVAL=$?
1558    if test "x$RETVAL" = x0 ; then
1559        HAVE_TEST_L=t
1560    fi
1561  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1562    
1563    #  Check for broken *.F/*.f handling and fix if possible
1564    check_for_broken_Ff
1565    
1566    if test ! "x$MPI" = x ; then
1567          echo "  Turning on MPI cpp macros"
1568          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1569    fi
1570    
1571    if test ! "x$TS" = x ; then
1572          echo "  Turning on timing per timestep"
1573          if test ! "x$FOOLAD" = x ; then
1574                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1575          else
1576                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1577          fi
1578          PACKAGES="$PACKAGES showflops"
1579    fi
1580    if test ! "x$PAPIS" = x ; then
1581          echo "  Turning on PAPI flop summary per timestep"
1582          echo "  Please make sure PAPIINC, PAPILIB are defined"
1583          if test ! "x$FOOLAD" = x ; then
1584                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1585          else
1586                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1587          fi
1588          INCLUDES="$INCLUDES $PAPIINC"
1589          LIBS="$LIBS $PAPILIB"
1590          PACKAGES="$PACKAGES showflops"
1591    fi
1592    if test ! "x$PCLS" = x ; then
1593          echo "  Turning on PCL counter summary per timestep"
1594          echo "  Please make sure PCLINC, PCLLIB are defined"
1595          if test ! "x$FOOLAD" = x ; then
1596                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1597          else
1598                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1599          fi
1600          INCLUDES="$INCLUDES $PCLINC"
1601          LIBS="$LIBS $PCLLIB"
1602          PACKAGES="$PACKAGES showflops"
1603    fi
1604    if test ! "x$PAPI" = x ; then
1605          if test ! "x$PAPIS" = x ; then
1606              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1607              echo "  Sticking with PAPI flop summary per timestep!"
1608          else
1609              echo "  Turning on performance analysis with PAPI"
1610              echo "  Please make sure PAPIINC, PAPILIB are defined"
1611              DEFINES="$DEFINES -DUSE_PAPI"
1612              INCLUDES="$INCLUDES $PAPIINC"
1613              LIBS="$LIBS $PAPILIB"
1614          fi
1615    fi
1616    if test ! "x$PCL" = x ; then
1617          if test ! "x$PCLS" = x ; then
1618              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1619              echo "  Sticking with PCL flop summary per timestep!"
1620          else
1621              echo "  Turning on performance analysis with PCL"
1622              echo "  Please make sure PCLINC, PCLLIB are defined"
1623              DEFINES="$DEFINES -DUSE_PCL"
1624              INCLUDES="$INCLUDES $PCLINC"
1625              LIBS="$LIBS $PCLLIB"
1626          fi
1627    fi
1628    if test ! "x$HPMT" = x ; then
1629          if test ! "x$PAPI" = x ; then
1630              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1631              echo "  Sticking with PAPI!"
1632          else if test ! "x$PCL" = x ; then
1633              echo "  PCL and the HPM Toolkit cannot co-exist!"
1634              echo "  Sticking with PCL!"
1635          else
1636              echo "  Turning on performance analysis with the HPM Toolkit"
1637              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1638              DEFINES="$DEFINES -DUSE_LIBHPM"
1639              INCLUDES="$INCLUDES $HPMTINC"
1640              LIBS="$LIBS $HPMTLIB"
1641          fi
1642          fi
1643    fi
1644    if test ! "x$GSL" = x ; then
1645          echo "  Turning on use of GSL to control floating point calculations"
1646          echo "  Please make sure GSLINC, GSLLIB are defined"
1647          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1648          INCLUDES="$INCLUDES $GSLINC"
1649          LIBS="$LIBS $GSLLIB"
1650    fi
1651    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1652    if test ! "x$USE_EXTENDED_SRC" = x ; then
1653          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1654          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1655    fi
1656    
1657  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1658  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1659  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1660        program hello        program hello
1661        call system('echo hi')        call system('echo hi')
1662        end        end
1663  EOF  EOF
1664  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1665  RETVAL=$?  RETVAL=$?
1666  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1667      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 905  else Line 1673  else
1673  fi  fi
1674  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1675    
1676  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1677  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1678        program hello        program hello
1679        CHARACTER(128) string        CHARACTER*(128) string
1680        string = ' '        string = ' '
1681        call fdate( string )        call fdate( string )
1682        print *, string        print *, string
1683        end        end
1684  EOF  EOF
1685  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1686  RETVAL=$?  RETVAL=$?
1687  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1688      HAVE_FDATE=t      HAVE_FDATE=t
# Line 926  else Line 1694  else
1694  fi  fi
1695  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1696    
1697  echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1698    cat > genmake_tcomp.$FS <<EOF
1699          program hello
1700          REAL*4 ACTUAL, TARRAY(2)
1701          EXTERNAL ETIME
1702          REAL*4 ETIME
1703          actual = etime( tarray )
1704          print *, tarray
1705          end
1706    EOF
1707    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1708    RETVAL=$?
1709    if test "x$RETVAL" = x0 ; then
1710        HAVE_ETIME=t
1711        DEFINES="$DEFINES -DHAVE_ETIME"
1712        echo "yes"
1713    else
1714        HAVE_ETIME=
1715        echo "no"
1716    fi
1717    rm -f genmake_tcomp*
1718    
1719    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1720  check_HAVE_CLOC  check_HAVE_CLOC
1721  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1722      echo "yes"      echo "yes"
1723  else  else
1724      echo "no"      echo "no"
1725        if test "x$EMBED_SRC" = xt ; then
1726            echo "    WARNING: you requested file embedding but it has"
1727            echo "      been disabled since C code cannot be called"
1728            EMBED_SRC=
1729        fi
1730    fi
1731    rm -f genmake_t*
1732    
1733    printf "  Can we unlimit the stack size using $FC...  "
1734    check_HAVE_SETRLSTK
1735    if test "x$HAVE_SETRLSTK" = xt ; then
1736        echo "yes"
1737    else
1738        echo "no"
1739    fi
1740    rm -f genmake_t*
1741    
1742    printf "  Can we register a signal handler using $FC...  "
1743    check_HAVE_SIGREG
1744    if test "x$HAVE_SIGREG" = xt ; then
1745        echo "yes"
1746    else
1747        echo "no"
1748  fi  fi
1749  rm -f genmake_t*  rm -f genmake_t*
1750    
1751  echo -n "  Can we create NetCDF-enabled binaries...  "  printf "  Can we use stat() through C calls...  "
1752    check_HAVE_STAT
1753    if test "x$HAVE_STAT" != x ; then
1754        echo "yes"
1755    else
1756        echo "no"
1757    fi
1758    rm -f genmake_t*
1759    
1760    printf "  Can we create NetCDF-enabled binaries...  "
1761  check_netcdf_libs  check_netcdf_libs
1762  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
1763      echo "yes"      echo "yes"
1764  else  else
1765      echo "no"      echo "no"
1766  fi  fi
1767    DEFINES="$DEFINES $IGNORE_TIME"
1768    
1769    if test "x$EMBED_SRC" = xt ; then
1770        build_embed_encode
1771    fi
1772    if test "x$EMBED_SRC" = xt ; then
1773        ENABLE="$ENABLE embed_files"
1774    fi
1775    
1776    
1777  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1778  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1779  for d in $MODS ; do  for d in $MODS ; do
1780      if test ! -d $d ; then      if test ! -d $d ; then
1781          echo          echo
1782          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1783          exit 1          exit 1
1784      else      else
1785          echo -n " $d"          printf " $d"
1786          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1787          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1788      fi      fi
1789  done  done
1790  echo  echo
1791    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1792  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1793      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1794  fi  fi
1795    
1796  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1797      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1798        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1799          EXEDIR=../exe          EXEDIR=../exe
1800      else      else
1801          EXEDIR=.          EXEDIR=.
# Line 982  if test "x${TOOLSDIR}" = x ; then Line 1810  if test "x${TOOLSDIR}" = x ; then
1810      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1811  fi  fi
1812  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1813      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1814      exit 1      exit 1
1815  fi  fi
1816  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1817      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1818        RETVAL=$?
1819        if test "x${RETVAL}" = x0 ; then
1820            S64='$(TOOLSDIR)/set64bitConst.sh'
1821        else
1822            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1823            RETVAL=$?
1824            if test "x${RETVAL}" = x0 ; then
1825                S64='$(TOOLSDIR)/set64bitConst.csh'
1826            else
1827                cat <<EOF
1828    
1829    ERROR: neither of the two default scripts:
1830    
1831        ${TOOLSDIR}/set64bitConst.sh
1832        ${TOOLSDIR}/set64bitConst.csh
1833    
1834      are working so please check paths or specify (with \$S64) a
1835      working version of this script.
1836    
1837    EOF
1838                exit 1
1839            fi
1840        fi
1841  fi  fi
1842  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1843    
# Line 1008  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1859  if test -r $ROOTDIR"/eesupp/src/Makefile
1859      fi      fi
1860  fi  fi
1861    
1862  #same for exch2  #same for pkg/exch2 and pkg/regrid
1863  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
1864      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1865      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
1866      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1
1867      if test "x${RETVAL}" = x0 ; then          RETVAL=$?
1868          rm -f make_exch2.errors          if test "x${RETVAL}" = x0 ; then
1869      else              rm -f make_${pdir}.errors
1870          echo "Error: problem encountered while building source files in exch2:"          else
1871          cat make_exch2.errors 1>&2              echo "Error: problem encountered while building source files in pkg/${pdir}:"
1872          exit 1              cat make_${pdir}.errors 1>&2
1873                exit 1
1874            fi
1875      fi      fi
1876  fi  done
1877    
1878  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1879  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
# Line 1077  else Line 1930  else
1930          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1931          RETVAL=$?          RETVAL=$?
1932          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1933              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1934              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1935              exit 1              exit 1
1936          fi          fi
# Line 1085  else Line 1938  else
1938              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1939          done          done
1940          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1941          expand_pkg_groups          RET=1
1942            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1943          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1944      fi      fi
1945  fi  fi
1946    
1947  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1948    for i in $PACKAGES ; do
1949        echo $i >> ./.tmp_pack
1950    done
1951    for i in `grep  "-" ./.tmp_pack` ; do
1952        j=`echo $i | sed 's/[-]//'`
1953        DISABLE="$DISABLE $j"
1954    done
1955  pack=  pack=
1956  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1957      addit="t"      addit="t"
# Line 1107  PACKAGES="$pack" Line 1968  PACKAGES="$pack"
1968  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1969  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1970  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1971    # Test if each explicitly referenced package exists
1972  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1973      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1974        if test ! -d "$ROOTDIR/pkg/$j" ; then
1975          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1976          exit 1          exit 1
1977      fi      fi
1978      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1979  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1980  PACKAGES=  PACKAGES=
1981  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1982      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1983  done  done
1984    rm -f ./.tmp_pack
1985  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1986    
1987    #  Check for package MNC: if NetCDF is available, then build the MNC
1988    #  template files ; otherwise, delete mnc from the list of packages.
1989    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1990    RETVAL=$?
1991    if test "x$RETVAL" = x0 ; then
1992        if test "x$HAVE_NETCDF" != xt ; then
1993            cat <<EOF
1994    
1995    *********************************************************************
1996    WARNING: the "mnc" package was enabled but tests failed to compile
1997      NetCDF applications.  Please check that:
1998    
1999      1) NetCDF is correctly installed for this compiler and
2000      2) the LIBS variable (within the "optfile") specifies the correct
2001           NetCDF library to link against.
2002    
2003      Due to this failure, the "mnc" package is now DISABLED.
2004    *********************************************************************
2005    
2006    EOF
2007            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2008            DISABLE="$DISABLE mnc"
2009        else
2010            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2011            RETVAL=$?
2012            if test "x${RETVAL}" = x0 ; then
2013                rm -f make_mnc.errors
2014            else
2015                echo "Error: problem encountered while building source files in pkg/mnc:"
2016                cat make_mnc.errors 1>&2
2017                exit 1
2018            fi
2019        fi
2020    fi
2021    
2022    #  Check for package PROFILES: if NetCDF is not available,
2023    #  then delete profiles from the list of available packages.
2024    echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1
2025    RETVAL=$?
2026    if test "x$RETVAL" = x0 ; then
2027        if test "x$HAVE_NETCDF" != xt ; then
2028            cat <<EOF
2029    
2030    *********************************************************************
2031    WARNING: the "profiles" package was enabled but tests failed to
2032      compile NetCDF applications.  Please check that:
2033    
2034      1) NetCDF is correctly installed for this compiler and
2035      2) the LIBS variable (within the "optfile") specifies the correct
2036           NetCDF library to link against.
2037    
2038      Due to this failure, the "profiles" package is now DISABLED.
2039    *********************************************************************
2040    
2041    EOF
2042            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2043            DISABLE="$DISABLE profiles"
2044        fi
2045    fi
2046    
2047  echo "  applying package dependency rules"  echo "  applying package dependency rules"
2048  ck=  ck=
2049  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
2050      i=0      i=0
2051      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2052      rtot=$nname      rtot=$nname
2053      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2054    
2055          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2056          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1162  while test "x$ck" != xtt ; do Line 2084  while test "x$ck" != xtt ; do
2084    
2085          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2086          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2087                #echo "   " $pname ": need to add :" $dname
2088              in_dis="f"              in_dis="f"
2089              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2090                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1186  while test "x$ck" != xtt ; do Line 2109  while test "x$ck" != xtt ; do
2109              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2110              exit 1              exit 1
2111          fi          fi
2112          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2113            #i=$(( $i + 1 ))
2114      done      done
2115      ck=$ck"t"      ck=$ck"t"
2116  done  done
# Line 1205  for i in $PACKAGES ; do Line 2129  for i in $PACKAGES ; do
2129      fi      fi
2130  done  done
2131    
 #  Build MNC templates and check for ability to build and use NetCDF  
 echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  
 RETVAL=$?  
 if test "x$RETVAL" = x0 ; then  
     ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         rm -f make_mnc.errors  
     else  
         echo "Error: problem encountered while building source files in pkg/mnc:"  
         cat make_mnc.errors 1>&2  
         exit 1  
     fi  
     if test -a "x$HAVE_NETCDF" != xt ; then  
         cat <<EOF  
   
 WARNING: the "mnc" package has been enabled but tests failed to  
   compile and/or execute NetCDF applications.  Please check that:  
   
   1) NetCDF is installed for your compiler and  
   2) the LIBS variable (within the 'optfile") specifies the correct  
        NetCDF library to link against.  
     
 EOF  
     fi  
 fi  
   
2132  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2133  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2134  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
# Line 1251  for n in $names ; do Line 2148  for n in $names ; do
2148              fi              fi
2149          done          done
2150          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2151              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2152              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2153          fi          fi
2154      fi      fi
2155  done  done
2156  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2157  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2158      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2159      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2160  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2161    
# Line 1332  fi Line 2229  fi
2229    
2230  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2231  #  compiler.  #  compiler.
2232  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2233      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2234  fi  fi
2235  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2236  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2237      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2238      for j in $list_files ; do      for j in $list_files ; do
2239          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2240      done      done
2241  done  done
2242    if test ! "x"$FS = "x.f" ; then
2243        cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2244        mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2245    fi
2246    
2247  echo  echo
2248  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2249  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2250  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2251      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2252          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2253      fi      fi
2254  done  done
2255    
2256    if test ! "x$DIVA" = x ; then
2257        echo "  Creating the pseudo-MPI include directory"
2258        INCLUDES="-I./mpi_headers $INCLUDES"
2259        rm -rf ./mpi_headers
2260        mkdir -p ./mpi_headers
2261    
2262        if test "x$MPIINCLUDEDIR" = x ; then
2263            if test "x$MPIHOME" = x ; then
2264                MPIHOME='/usr'
2265            fi
2266            MPIINCLUDEDIR='$MPIHOME/include'
2267        fi
2268        
2269        if test -r $MPIINCLUDEDIR/mpif.h ; then
2270            for i in $MPI_HEADER_FILES; do
2271                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2272            done
2273    
2274            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2275        else
2276            echo " We cannot create a copy of mpif.h!"
2277    #       exit -1
2278        fi
2279    fi
2280    
2281  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2282  rm -rf .links.tmp  rm -rf .links.tmp
2283  mkdir .links.tmp  mkdir .links.tmp
2284    touch .links.tmp/foo
2285    if test ! -r ".links.tmp/foo" ; then
2286        echo
2287        echo "ERROR : something is wrong with your directory permissions or"
2288        echo "   your user file-creation mask (\"umask\") since creating a"
2289        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2290        echo "   not working.  Please try setting your umask to something"
2291        echo "   sane such as:"
2292        echo
2293        echo "      umask 0002"
2294        echo
2295        echo "   and please verify that you have the proper permissions for"
2296        echo "   creating sub-directories and then reading files created"
2297        echo "   within them."
2298        echo
2299        exit 1
2300    fi
2301    rm -f .links.tmp/foo
2302    
2303    if test "x$OPENAD" != x ; then
2304        OAD_DONT_COMPILE="/dev/null"
2305        OAD_DONT_TRANSFORM="/dev/null"
2306        OAD_KEEP_ORIGINAL="/dev/null"
2307        OAD_CB2M_FILES="/dev/null"
2308        echo "  looking for dontCompile file:  "
2309        for i in "." $MODS ; do
2310            if test -r $i"/dontCompile" ; then
2311                OAD_DONT_COMPILE=$i"/dontCompile"
2312                echo "     found $OAD_DONT_COMPILE"
2313                break
2314            fi
2315        done
2316        echo "  looking for dontTransform file:  "
2317        for i in "." $MODS ; do
2318            if test -r $i"/dontTransform" ; then
2319                OAD_DONT_TRANSFORM=$i"/dontTransform"
2320                echo "     found $OAD_DONT_TRANSFORM"
2321                break
2322            fi
2323        done
2324        echo "  looking for keepOriginal file:  "
2325        for i in "." $MODS ; do
2326            if test -r $i"/keepOriginal" ; then
2327                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2328                echo "     found $OAD_KEEP_ORIGINAL"
2329                break
2330            fi
2331        done
2332        echo "  looking for cb2mFiles:  "
2333        for i in "." $MODS ; do
2334            if test -r $i"/cb2mFiles" ; then
2335                OAD_CB2M_FILES=$i"/cb2mFiles"
2336                echo "     found $OAD_CB2M_FILES"
2337                break
2338            fi
2339        done
2340        echo "   OpenAD exceptions:  "
2341    fi
2342    
2343  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2344  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2345  echo -n 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2346  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2347  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2348  echo -n 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2349  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2350    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2351  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2352  for d in $alldirs ; do  for d in $alldirs ; do
2353      deplist=      deplist=
2354      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2355      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2356        if test "x$OPENAD" != x ; then
2357            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2358        fi
2359      for sf in $sfiles ; do      for sf in $sfiles ; do
2360          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2361              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2362                    ignore_f=f
2363                  case $d/$sf in                  case $d/$sf in
2364                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2365                            ignore_f=t
2366                          ;;                          ;;
2367                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2368                            ignore_f=t
2369                          ;;                          ;;
2370                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2371                            ignore_f=t
2372                            ;;
2373                      ./BUILD_INFO.h)
2374                            ignore_f=t
2375                            ;;
2376                      ./EMBEDDED_FILES.h)
2377                            ignore_f=t
2378                          ;;                          ;;
2379                    *)                    *)
2380                          touch .links.tmp/$sf                          #  For the local directory *ONLY*,
2381                          deplist="$deplist $sf"                          #  ignore all soft-links
2382                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2383                                ignore_f=t
2384                            else
2385                                touch .links.tmp/$sf
2386                                deplist="$deplist $sf"
2387                            fi
2388                          ;;                          ;;
2389                  esac                  esac
2390                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  if test "x$ignore_f" = xf ; then
2391                  case $extn in                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2392                      F)                      case $extn in
2393                          echo    " \\"  >> srclist.inc                        F)
2394                          echo -n " $sf" >> srclist.inc                          echo    " \\"  >> F77srclist.tmp
2395                            printf " $sf" >> F77srclist.tmp
2396                            if test "x$OPENAD" != x ; then
2397                                basename=${sf%%.F}
2398                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2399                                if test -z "$isAD" ; then
2400                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2401                                    if test -z "$toBeIgnored" ; then
2402                                        echo    " \\"  >> nonADF77srclist.tmp
2403                                        printf " $sf" >> nonADF77srclist.tmp
2404                                    else
2405                                        echo "    not to be compiled   :  $sf"
2406                                    fi
2407                                else # file is initially listed as an AD file we want to exclude it
2408                                     # or we want to retain the untransformed version
2409                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2410                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2411                                    if test -n "$notToBeTransformed"; then
2412                                        echo "    not to be transformed:  $sf"
2413                                    fi
2414                                    if test -n "$untransformedVersionToBeKept" ; then
2415                                        echo "    original to be kept  :  $sf"
2416                                    fi    
2417                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2418                                        echo    " \\"  >> nonADF77srclist.tmp
2419                                        printf " $sf" >> nonADF77srclist.tmp
2420                                    fi
2421                                fi
2422                            fi
2423                          ;;                          ;;
2424                      F90)                      F90)
2425                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2426                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2427                          ;;                          ;;
2428                      c)                      c)
2429                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2430                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2431                          ;;                          ;;
2432                      h)                      h)
2433                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2434                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2435                          ;;                          ;;
2436                      flow)                      flow)
2437                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.tmp
2438                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.tmp
2439                          ;;                          ;;
2440                  esac                     esac
2441                    fi
2442              fi              fi
2443          fi          fi
2444      done      done
2445      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2446          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2447            echo "" >> srclinks.tmp
2448          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2449          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2450          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2451    # This may happen when make thinks that a header file has to be "remade"
2452    # because a module it depends on has changed.  In this case we do nothing.
2453            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2454          fi
2455      fi      fi
2456  done  done
2457  rm -rf .links.tmp  rm -rf .links.tmp
2458  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2459  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2460  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2461  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2462  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2463    echo "" >> ad_flow_files.tmp
2464    
2465  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2466      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
2467  fi  fi
2468  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1434  echo "#    $MACHINE" >> $MAKEFILE Line 2471  echo "#    $MACHINE" >> $MAKEFILE
2471  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2472  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2473  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2474  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
2475  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2476  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2477    
2478  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2479  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
# Line 1482  ENABLED_PACKAGES = ${ENABLED_PACKAGES} Line 2519  ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2519  DISABLED_PACKAGES = ${DISABLED_PACKAGES}  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2520    
2521  # These files are created by Makefile  # These files are created by Makefile
2522  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2523  EOF  EOF
2524    
2525  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2526        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2527    else
2528        echo "EMBEDDED_FILES = " >>$MAKEFILE
2529    fi
2530    
2531    #  Note: figure out some way to add Hyades JAM libraries here
2532  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2533  # Unix ln (link)  # Unix ln (link)
2534  LN = ${LN}  LN = ${LN}
# Line 1501  KPP = ${KPP} Line 2542  KPP = ${KPP}
2542  FC = ${FC}  FC = ${FC}
2543  # Fortran compiler  # Fortran compiler
2544  F90C = ${F90C}  F90C = ${F90C}
2545    # C compiler
2546    CC = ${CC}
2547  # Link editor  # Link editor
2548  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2549    
2550  # Defines for CPP  # Defines for CPP
2551  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1512  INCLUDES = ${INCLUDES} Line 2555  INCLUDES = ${INCLUDES}
2555  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2556  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2557  # Optim./debug for FC  # Optim./debug for FC
2558  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2559  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2560  # Optim./debug for FC  # Optim./debug for FC
2561  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2562  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2563    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2564  # Flags for CC  # Flags for CC
2565  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2566  # Files that should not be optimized  # Files that should not be optimized
2567  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2568  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2569  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2570  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2571  # Name of the Mekfile  # Name of the Mekfile
2572  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2573    
2574  EOF  EOF
2575    
2576  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2577  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2578  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2579  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2580  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2581  echo               >> $MAKEFILE  cat ad_flow_files.tmp   >> $MAKEFILE
 echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  
 echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  
 echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2582    
2583  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
 rm -f ad_flow_files.inc  
2584    
2585  cat >>$MAKEFILE <<EOF  echo >> $MAKEFILE
2586    
2587  .SUFFIXES:  # add definitions for preprocessed sources
2588  .SUFFIXES: .o .f .p .F .c .F90 .f90  # and note that not all systems allow case sensitive extensions
2589    # hence the $FS and $FS90 here.
2590    # for fixed format f90 files we use ff90 or FF90 resp
2591    # but these are not expected to be the original source files
2592    
2593    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2594    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2595    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2596    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2597    echo >> $MAKEFILE
2598    echo '.SUFFIXES:' >> $MAKEFILE
2599    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2600    
2601    cat >>$MAKEFILE <<EOF
2602    
2603  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2604  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2605          @echo Creating \$@ ...          @echo Creating \$@ ...
2606          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2607  depend:  depend:
2608          @make links          @make links
2609          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2610          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2611            -rm -f makedepend.out
2612    
2613    lib: libmitgcmuv.a
2614    
2615    libmitgcmuv.a: \$(OBJFILES)
2616            ar rcv libmitgcmuv.a \$(OBJFILES)
2617            ar d   libmitgcmuv.a main.o
2618    
2619  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2620    
2621  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2622    
2623  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2624          @printf 'running ... '          @printf 'running ... '
2625          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2626    
2627  clean:  clean:
2628          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2629            -rm -rf *.o
2630            -rm -rf *.$FS *.flowdir
2631            -rm -rf *.f$FS90 *_mod.h *_mod.F90 *.FF90 *.mod-whirl ad_input*
2632            -rm -rf temp.sed
2633  Clean:  Clean:
2634          @make clean          @make clean
2635          @make cleanlinks          @make cleanlinks
2636          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES)
2637          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log f90mkdepend.log *.bak
2638            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2639  CLEAN:  CLEAN:
2640          @make Clean          @make Clean
2641          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2642          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2643          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2644          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2645            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2646            -rm -rf mnc_test_*
2647    
2648  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2649  makefile:  makefile:
2650          $THIS_SCRIPT $@          $THIS_SCRIPT $G2ARGS
2651  cleanlinks:  cleanlinks:
2652          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2653    
2654  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2655  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2656          @echo Creating \$@ ...          @echo Creating \$@ ...
2657          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2658  AD_CONFIG.h:  AD_CONFIG.h:
2659          @echo Creating \$@ ...          @echo Creating \$@ ...
2660          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2661  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
2662          @echo Creating \$@ ...          @echo Creating \$@ ...
2663          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
2664    
2665  # The normal chain of rules is (  .F - .f - .o  )  BUILD_INFO.h:
2666  .F.f:          @echo Creating \$@ ...
2667    EOF
2668    
2669    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2670    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2671    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2672    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2673    
2674    if test "x$EMBED_SRC" = xt ; then
2675        cat >>$MAKEFILE <<EOF
2676    
2677    decode_files.o : EMBEDDED_FILES.h
2678    
2679    ##  \$(F77_PP_SRC_FILES)
2680    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2681            @echo Creating \$@ ...
2682            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2683            -rm -f all_fF.tar.gz
2684            -gzip all_fF.tar
2685    
2686    EMBEDDED_FILES.h : all_fF.tar.gz
2687            @echo Creating \$@ ...
2688            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2689    
2690    EOF
2691    fi
2692    
2693    cat >>$MAKEFILE <<EOF
2694    
2695    # The normal chain of rules is (  .F - .$FS - .o  )
2696    
2697    ## This nullifies any default implicit rules concerning these two file types:
2698    ## %.o : %.F
2699    
2700    .F.$FS:
2701          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2702  .f.o:  .$FS.o:
2703          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2704  .F90.f90:  .F90.$FS90:
2705          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2706  .f90.o:  .FF90.f$FS90:
2707            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2708    .$FS90.o:
2709          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2710    .f$FS90.o:
2711            cp \$< \$(basename  \$<).f90
2712            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2713  .c.o:  .c.o:
2714          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2715    .flow.flowdir:
2716            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2717    
2718  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2719  .F.p:  .F.p:
2720          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2721  .p.f:  .p.$FS:
2722          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2723    
2724    EOF
2725    
2726  #=========================================  #=========================================
2727  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2728    #===  for TAMC/TAF  ======================
2729    
2730    if test "x$OPENAD" == x ; then
2731    
2732    cat >>$MAKEFILE <<EOF
2733    
2734  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2735  TAF            = ${TAF}  TAF            = ${TAF}
# Line 1629  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2744  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2744  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2745  for i in $ad_vars ; do  for i in $ad_vars ; do
2746      name=$i      name=$i
2747      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2748      eval $t1      eval $t1
2749      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2750      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2751  done  done
2752    
2753  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2754  echo >> $MAKEFILE  echo >> $MAKEFILE
2755  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2756  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2757  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2758      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2759      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2760  done  done
2761  echo >> $MAKEFILE  echo >> $MAKEFILE
2762  rm -f ad_files  rm -f adSrcFiles.tmp
2763    
2764  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2765    
2766  # ... AD ...  # ... AD ...
2767  adall: ad_taf  adall: \$(EXE_AD)
2768  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
2769  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2770    
2771  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2772          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2773          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2774          -rm -f ad_config.template          -rm -f ad_config.template
2775          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2776          @make \$(AD_FLOW_FILES)          @make \$(FLOFILES)
2777          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(FLOFILES) \$(AD_FILES) > ad_input_code.$FS
2778    
2779  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
2780          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2781          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
2782            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2783    
2784  adtafonly:  adtafonly:
2785          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2786          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
2787            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2788  ad_taf: ad_taf_output.o \$(OBJFILES)  
2789          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2790            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2791  ad_tamc_output.f: ad_input_code.f  
2792          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f  ad_tamc_output.$FS: ad_input_code.$FS
2793          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2794            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2795    
2796  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2797          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2798    
2799    adonlyfwd:
2800            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2801    
2802    adtrick:
2803            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2804    
2805  # ... FTL ...  # ... FTL ...
2806  ftlall: ftl_taf  ftlall: ftl_taf
2807  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
2808  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
2809    
2810  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2811          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2812          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2813          -rm -f ftl_config.template          -rm -f ftl_config.template
2814          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2815          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2816          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2817    
2818  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
2819          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2820          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          ls -l ftl_input_code_ftl.$FS
2821            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2822    
2823  ftltafonly:  ftltafonly:
2824          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2825          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          ls -l ftl_input_code_ftl.$FS
2826            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2827    
2828  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2829          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2830    
2831  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.$FS: ftl_input_code.$FS
2832          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2833          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2834    
2835  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2836          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2837    
2838    
2839  # ... SVD ...  # ... SVD ...
2840  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2841  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2842            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2843    svdall: svd_touch svd_taf
2844    
2845  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
2846          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2847    
2848            @echo "--->>> Only COMPILE svd code! <<<---"
2849            @echo "--->>> Assumes you previously <<<---"
2850            @echo "--->>> did make svdtaf        <<<---"
2851    
2852    svd_touch:
2853            @echo "--->>> Only COMPILE svd code! <<<---"
2854            @echo "--->>> Assumes you previously <<<---"
2855            @echo "--->>> did make svdtaf        <<<---"
2856            touch ad_taf_output.$FS ftl_taf_output.$FS
2857            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2858            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2859            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2860            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2861            -rm -f ftl_config.template
2862    
2863  #=========================================  EOF
2864    
2865    fi
2866    
2867    #===  for OpenAD  ========================
2868    
2869    if test "x$OPENAD" != x ; then
2870    
2871    # ============ begin OpenAD specific section ==============
2872    
2873    cat >>$MAKEFILE <<EOF
2874    
2875    # all the source files linked from the various locations:
2876    ALL_LINKED_FILES= \
2877    \$(F77_SRC_FILES) \
2878    \$(C_SRC_FILES) \
2879    \$(H_SRC_FILES) \
2880    \$(F90_SRC_FILES) \
2881    \$(SPECIAL_FILES)
2882    
2883    ifndef OPENADROOT
2884      \$(error "Error:  environment variable OPENADROOT not defined!")
2885    endif
2886    
2887    ifndef XAIFSCHEMAROOT
2888      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2889    endif
2890    
2891    ifndef XAIFBOOSTERROOT
2892      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2893    endif
2894    
2895    EOF
2896    
2897    echo "  Add the source list for common block to module conversion "
2898    echo >> $MAKEFILE
2899    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2900    for i in `cat ${OAD_CB2M_FILES}` ; do
2901      echo    " \\" >> $MAKEFILE
2902      printf " $i" >> $MAKEFILE
2903    done
2904    echo >> $MAKEFILE
2905    
2906    echo "  Add the source list for AD code generation"
2907    echo >> $MAKEFILE
2908    printf "AD_FILES = " >> $MAKEFILE
2909    for i in `cat ${OAD_CB2M_FILES}` ; do
2910      echo    " \\" >> $MAKEFILE
2911      printf " ${i}_mod.f$FS90" >> $MAKEFILE
2912    done
2913    AD_FILES=`cat adSrcFiles.tmp`
2914    for i in $AD_FILES ; do
2915      basename=${i%%.f}
2916      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
2917      if test -z "$toBeIgnored" ; then
2918        echo    " \\" >> $MAKEFILE
2919        printf " $i" >> $MAKEFILE
2920      fi
2921    done
2922    echo >> $MAKEFILE
2923    rm -f adSrcFiles.tmp
2924    
2925    cat >>$MAKEFILE <<EOF
2926    
2927    adAll: \$(EXE_AD)
2928    .PHONY: adAll
2929    
2930    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
2931    
2932    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
2933    
2934    .PHONY: adDepend
2935    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
2936            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2937            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2938            -rm -f makedepend.out
2939    
2940    OPENAD_SUPPORT_F90_SRC_FILES = \
2941    w2f__types.F90 \
2942    OAD_active.F90 \
2943    OAD_cp.F90 \
2944    OAD_rev.F90 \
2945    OAD_tape.F90        
2946    
2947    OPENAD_SUPPORT_C_SRC_FILES = \
2948    iaddr.c \
2949    timeRatio.c
2950    
2951    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
2952            cat \$^ > \$@
2953    
2954    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
2955            cat \$^ > \$@
2956    
2957    f95_test.out: f95_test_mods.f90 f95_test.f90
2958            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
2959            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
2960    
2961    AD_OBJ_FILES=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) all_mods.xb.x2w.w2f.pp.o  ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.o \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
2962    
2963    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(AD_OBJ_FILES)
2964            @echo Creating \$@ ...
2965            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES) \$(LIBS)
2966    
2967    # makefile debug rule
2968    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
2969    .PHONY: openad
2970    
2971    # create the module files
2972    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
2973            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
2974    
2975    # create the header files
2976    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
2977            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
2978    
2979    # change everybody else to use the new module files:
2980    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
2981            ../OAD_support/cb2mUseModules.bash $< ${MPI}
2982    
2983    # makefile debug rule
2984    small_f: \$(CB2M_F90_PP_SRC_FILES)
2985    .PHONY: small_f
2986    
2987    ad_output.txt: \$(EXE_AD)
2988            @printf 'linking data files ... '
2989            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
2990            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
2991            @printf 'running ... '
2992            @./\$(EXE_AD) > \$@
2993    
2994    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
2995    ad_input_code.f$FS90: ../OAD_support/maxMinDefs.f \$(CB2M_AD_FILES)
2996            cat \$^ > \$@
2997    
2998    # strip all comments and blanks to reduce
2999    # the file size in order to reduce perl's memory requirements
3000    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3001            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3002    
3003    # mfef90 preprocessing
3004    # expand statement functions
3005    # expose mfef90 specific substring handling
3006    # add the w2f__types module
3007    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3008            ./mfef90 -r8 -z -F -N132 \$<
3009            mv \$<.B \$(basename \$<).B
3010            ./whirl2f -openad \$(basename \$<).B
3011            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3012    
3013    # canonicalizer
3014    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3015            ./preProcess.py --mode=reverse \$< -o \$@
3016    
3017    # F -> WHIRL
3018    # note that the canonicalized version cuts off at col 72
3019    # doing this also for string constants which is ok as long
3020    # as we are in fixed mode and cut of exactly there.
3021    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3022    # characters respectively.
3023    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3024            ./mfef90 -r8 -z -F \$<
3025            mv \$<.B \$@
3026    
3027    # WHIRL -> XAIF
3028    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3029            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3030    
3031    # XAIF -> XAIF'
3032    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd openad_adm
3033            ./openad_adm -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3034    
3035    # XAIF' -> WHIRL'
3036    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3037            ./xaif2whirl --debug 1 --structured ad_input_code_sf.w2f.pre.B \$<
3038    
3039    # WHIRL' -> F'
3040    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3041            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3042    
3043    # insert template directives
3044    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3045            ../OAD_support/insertTemplateDir.bash \$< \$@
3046    
3047    # postprocess F'
3048    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 multi-pp.pl ../OAD_support/ad_inline.f \$(wildcard ../OAD_support/ad_template.*.f)
3049            perl multi-pp.pl -inline=../OAD_support/ad_inline.f \$<
3050            # the postprocessor still gets the name wrong
3051            cat \$<.pp | sed 's/RETURN//' > \$@
3052    
3053    # extract all transformed modules
3054    all_mods.xb.x2w.w2f.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3055            cat \$< | sed -n '/MODULE /,/END MODULE/p' > \$@
3056    
3057    # remove the transformed globals module from the
3058    # transformed ad_input_code file
3059    # and remove for now the duplicate variables
3060    # and fix 2 data statements
3061    ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3062            cat \$< | sed '/MODULE /,/END MODULE/d' | sed '/^      INTEGER(w2f__i4) DOLOOP_UB/d' > \$@
3063    
3064    # setup some links
3065    %.xsd:
3066            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3067    
3068    mfef90:
3069            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3070    
3071    # link the support files:
3072    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3073            \$(LN) ../OAD_support/\$@ .
3074    
3075    whirl2xaif xaif2whirl:
3076            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3077    
3078    %.pl:
3079            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3080    
3081    preProcess.py:
3082            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3083    
3084    whirl2f whirl2f_be:
3085            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3086    
3087    openad_adm:
3088            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/test/t \$@
3089    
3090    # ============ end OpenAD specific section ==============
3091    
3092  EOF  EOF
3093    
3094    fi
3095    
3096    #=========================================
3097    
3098  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3099      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3100  fi  fi
# Line 1735  for i in $KPPFILES ; do Line 3106  for i in $KPPFILES ; do
3106      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3107          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3108      fi      fi
3109      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3110  done  done
3111    
3112  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1745  for i in $NOOPTFILES ; do Line 3116  for i in $NOOPTFILES ; do
3116      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3117          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3118      fi      fi
3119      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3120      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3121  done  done
3122    
# Line 1759  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3130  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3130  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3131    
3132  # Create special header files  # Create special header files
3133  $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3134  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3135      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3136  else  else
# Line 1773  else Line 3144  else
3144      fi      fi
3145  fi  fi
3146  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3147      $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
3148  fi  fi
3149    
3150    
3151  #  Write the "state" for future records  #  Write the "state" for future records
3152  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
3153      echo -n "" > genmake_state      printf "" > genmake_state
3154      for i in $gm_state ; do      for i in $gm_state ; do
3155          t1="t2=\$$i"          t1="t2=\$$i"
3156          eval $t1          eval $t1

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