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revision 1.156 by heimbach, Mon Oct 23 19:40:43 2006 UTC revision 1.179 by jmc, Fri Nov 21 16:15:00 2008 UTC
# Line 325  find_possible_configs()  { Line 325  find_possible_configs()  {
325    
326      #================================================================      #================================================================
327      #  look for possible C compilers      #  look for possible C compilers
328      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329      p_CC=      p_CC=
330      for c in $tmp ; do      for c in $tmp ; do
331          rm -f ./genmake_hello.c  ./genmake_hello          rm -f ./genmake_hello.c  ./genmake_hello
# Line 364  EOF Line 364  EOF
364    
365      #================================================================      #================================================================
366      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
367      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 gfortran"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 601  Usage: "$0" [OPTIONS] Line 601  Usage: "$0" [OPTIONS]
601    
602      -gsl | --gsl      -gsl | --gsl
603            Use GSL to control floating point rounding and precision            Use GSL to control floating point rounding and precision
604        -devel | --devel
605              Add additional warning and debugging flags for development
606    
607      -mpi | --mpi      -mpi | --mpi
608            Include MPI header files and link to MPI libraries            Include MPI header files and link to MPI libraries
# Line 744  void FC_NAMEMANGLE(cloc) ( double *curti Line 746  void FC_NAMEMANGLE(cloc) ( double *curti
746   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
747  }  }
748  EOF  EOF
749      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
750        echo $COMM >> genmake_warnings
751        $COMM >> genmake_warnings 2>&1
752      RET_C=$?      RET_C=$?
753      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
754        program hello        program hello
# Line 754  EOF Line 758  EOF
758        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
759        end        end
760  EOF  EOF
761      $FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
762        echo $COMM >> genmake_warnings
763        $COMM >> genmake_warnings 2>&1
764      RET_F=$?      RET_F=$?
765      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
766      RETVAL=$?      RETVAL=$?
# Line 801  void FC_NAMEMANGLE(sigreg) (int * aip) Line 807  void FC_NAMEMANGLE(sigreg) (int * aip)
807      return;      return;
808  }  }
809  EOF  EOF
810      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
811        echo $COMM >> genmake_warnings
812        $COMM >> genmake_warnings 2>&1
813      RET_C=$?      RET_C=$?
814      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
815        program hello        program hello
# Line 849  void FC_NAMEMANGLE(setrlstk) () Line 857  void FC_NAMEMANGLE(setrlstk) ()
857      return;      return;
858  }  }
859  EOF  EOF
860      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
861        echo $COMM >> genmake_warnings
862        $COMM >> genmake_warnings 2>&1
863      RET_C=$?      RET_C=$?
864      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
865        program hello        program hello
# Line 893  void FC_NAMEMANGLE(tfsize) ( int *nbyte Line 903  void FC_NAMEMANGLE(tfsize) ( int *nbyte
903          *nbyte = -1;          *nbyte = -1;
904  }  }
905  EOF  EOF
906      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
907        echo $COMM >> genmake_warnings
908        $COMM >> genmake_tc.log 2>&1
909      RET_C=$?      RET_C=$?
910      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
911        program hello        program hello
# Line 983  EOF Line 995  EOF
995          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
996              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
997              HAVE_NETCDF=t              HAVE_NETCDF=t
998            else
999            # try again with "-lnetcdff" added to the libs
1000                echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1001                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1002                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1003                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1004                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1005                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1006                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1007                RET_COMPILE=$?
1008                cat genmake_tnc.log >> genmake_warnings
1009                if test "x$RET_COMPILE" = x0 ; then
1010                    LIBS="$LIBS -lnetcdff -lnetcdf"
1011                    HAVE_NETCDF=t
1012                fi
1013          fi          fi
1014      fi      fi
1015      rm -f genmake_tnc*      rm -f genmake_tnc*
# Line 1018  OPTFILE= Line 1045  OPTFILE=
1045  INCLUDES="-I. $INCLUDES"  INCLUDES="-I. $INCLUDES"
1046  FFLAGS=  FFLAGS=
1047  FOPTIM=  FOPTIM=
1048    FEXTRAFLAGS=
1049  CFLAGS=  CFLAGS=
1050  KFLAGS1=  KFLAGS1=
1051  KFLAGS2=  KFLAGS2=
# Line 1036  PAPI= Line 1064  PAPI=
1064  PCL=  PCL=
1065  HPMT=  HPMT=
1066  GSL=  GSL=
1067    DEVEL=
1068  HAVE_TEST_L=  HAVE_TEST_L=
1069    
1070  # DEFINES checked by test compilation or command-line  # DEFINES checked by test compilation or command-line
# Line 1094  TAMC_EXTRA= Line 1123  TAMC_EXTRA=
1123    
1124  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1125  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1126  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"
1127    
1128  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1129  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1130  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1131  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1132  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
# Line 1124  EOF Line 1153  EOF
1153    
1154  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1155  gm_local="genmake_local"  gm_local="genmake_local"
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
1156  printf "  getting local config information:  "  printf "  getting local config information:  "
1157  if test -f $gm_local ; then  if test -f $gm_local ; then
1158      echo "using $gm_local"      echo "using $gm_local"
# Line 1292  for ac_option in "$@" ; do Line 1315  for ac_option in "$@" ; do
1315          -gsl | --gsl)          -gsl | --gsl)
1316              GSL=true ;;              GSL=true ;;
1317    
1318            -devel | --devel)
1319                DEVEL=true ;;
1320    
1321          -mpi | --mpi)          -mpi | --mpi)
1322              MPI=true ;;              MPI=true ;;
1323          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
# Line 1340  done Line 1366  done
1366  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1367      echo      echo
1368      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1369      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1370      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1371      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/devel_HOWTO/"
1372      echo      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1373      echo "  for directions on how to setup and use the new \"genmake2\" input"      echo "WARNING: ignore \"./.genmakerc\" and continue."
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
1374      echo      echo
1375  fi  fi
1376    
# Line 1377  if test ! -d ${ROOTDIR} ; then Line 1402  if test ! -d ${ROOTDIR} ; then
1402  fi  fi
1403    
1404  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1405  if test -f "${ROOTDIR}/doc/tag-index" ; then  version_file="${ROOTDIR}/doc/tag-index"
1406      THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`  if test -f $version_file ; then
1407        THISVER=`grep '^checkpoint' $version_file | head -1`
1408    #-  remove ./BUILD_INFO.h file if older than version_file
1409        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1410            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1411            rm -f ./BUILD_INFO.h
1412        fi
1413  fi  fi
1414    
1415  if test "x$MAKEFILE" = x ; then  if test "x$MAKEFILE" = x ; then
# Line 1542  if test ! "x$TS" = x ; then Line 1573  if test ! "x$TS" = x ; then
1573        else        else
1574              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1575        fi        fi
1576          PACKAGES="$PACKAGES showflops"
1577  fi  fi
1578  if test ! "x$PAPIS" = x ; then  if test ! "x$PAPIS" = x ; then
1579        echo "  Turning on PAPI flop summary per timestep"        echo "  Turning on PAPI flop summary per timestep"
# Line 1553  if test ! "x$PAPIS" = x ; then Line 1585  if test ! "x$PAPIS" = x ; then
1585        fi        fi
1586        INCLUDES="$INCLUDES $PAPIINC"        INCLUDES="$INCLUDES $PAPIINC"
1587        LIBS="$LIBS $PAPILIB"        LIBS="$LIBS $PAPILIB"
1588          PACKAGES="$PACKAGES showflops"
1589  fi  fi
1590  if test ! "x$PCLS" = x ; then  if test ! "x$PCLS" = x ; then
1591        echo "  Turning on PCL counter summary per timestep"        echo "  Turning on PCL counter summary per timestep"
# Line 1564  if test ! "x$PCLS" = x ; then Line 1597  if test ! "x$PCLS" = x ; then
1597        fi        fi
1598        INCLUDES="$INCLUDES $PCLINC"        INCLUDES="$INCLUDES $PCLINC"
1599        LIBS="$LIBS $PCLLIB"        LIBS="$LIBS $PCLLIB"
1600          PACKAGES="$PACKAGES showflops"
1601  fi  fi
1602  if test ! "x$PAPI" = x ; then  if test ! "x$PAPI" = x ; then
1603        if test ! "x$PAPIS" = x ; then        if test ! "x$PAPIS" = x ; then
# Line 1943  done Line 1977  done
1977  rm -f ./.tmp_pack  rm -f ./.tmp_pack
1978  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1979    
1980  #  Check availability of NetCDF and then either build the MNC template  #  Check for package MNC: if NetCDF is available, then build the MNC
1981  #  files or delete mnc from the list of available packages.  #  template files ; otherwise, delete mnc from the list of packages.
1982  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1983  RETVAL=$?  RETVAL=$?
1984  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
# Line 1978  EOF Line 2012  EOF
2012      fi      fi
2013  fi  fi
2014    
2015    #  Check for package PROFILES: if NetCDF is not available,
2016    #  then delete profiles from the list of available packages.
2017    echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1
2018    RETVAL=$?
2019    if test "x$RETVAL" = x0 ; then
2020        if test "x$HAVE_NETCDF" != xt ; then
2021            cat <<EOF
2022    
2023    *********************************************************************
2024    WARNING: the "profiles" package was enabled but tests failed to
2025      compile NetCDF applications.  Please check that:
2026    
2027      1) NetCDF is correctly installed for this compiler and
2028      2) the LIBS variable (within the "optfile") specifies the correct
2029           NetCDF library to link against.
2030    
2031      Due to this failure, the "profiles" package is now DISABLED.
2032    *********************************************************************
2033    
2034    EOF
2035            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2036            DISABLE="$DISABLE profiles"
2037        fi
2038    fi
2039    
2040  echo "  applying package dependency rules"  echo "  applying package dependency rules"
2041  ck=  ck=
2042  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
2043      i=0      i=0
2044      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2045      rtot=$nname      rtot=$nname
2046      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2047    
2048          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2049          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 2018  while test "x$ck" != xtt ; do Line 2077  while test "x$ck" != xtt ; do
2077    
2078          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2079          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2080                #echo "   " $pname ": need to add :" $dname
2081              in_dis="f"              in_dis="f"
2082              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2083                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 2162  fi Line 2222  fi
2222    
2223  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2224  #  compiler.  #  compiler.
2225  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2226      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2227  fi  fi
2228  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2229  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2230      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2231      for j in $list_files ; do      for j in $list_files ; do
2232          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2233      done      done
2234  done  done
2235  if test ! "x"$FS = "x.f" ; then  if test ! "x"$FS = "x.f" ; then
2236      cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f      cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2237      mv -f ad_files_f ad_files      mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2238  fi  fi
2239    
2240  echo  echo
# Line 2232  if test ! -r ".links.tmp/foo" ; then Line 2292  if test ! -r ".links.tmp/foo" ; then
2292      exit 1      exit 1
2293  fi  fi
2294  rm -f .links.tmp/foo  rm -f .links.tmp/foo
2295    
2296    if test "x$OPENAD" != x ; then
2297        OAD_DONT_COMPILE="/dev/null"
2298        OAD_DONT_TRANSFORM="/dev/null"
2299        OAD_KEEP_ORIGINAL="/dev/null"
2300        OAD_CB2M_FILES="/dev/null"
2301        echo "  looking for dontCompile file:  "
2302        for i in "." $MODS ; do
2303            if test -r $i"/dontCompile" ; then
2304                OAD_DONT_COMPILE=$i"/dontCompile"
2305                echo "     found $OAD_DONT_COMPILE"
2306                break
2307            fi
2308        done
2309        echo "  looking for dontTransform file:  "
2310        for i in "." $MODS ; do
2311            if test -r $i"/dontTransform" ; then
2312                OAD_DONT_TRANSFORM=$i"/dontTransform"
2313                echo "     found $OAD_DONT_TRANSFORM"
2314                break
2315            fi
2316        done
2317        echo "  looking for keepOriginal file:  "
2318        for i in "." $MODS ; do
2319            if test -r $i"/keepOriginal" ; then
2320                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2321                echo "     found $OAD_KEEP_ORIGINAL"
2322                break
2323            fi
2324        done
2325        echo "  looking for cb2mFiles:  "
2326        for i in "." $MODS ; do
2327            if test -r $i"/cb2mFiles" ; then
2328                OAD_CB2M_FILES=$i"/cb2mFiles"
2329                echo "     found $OAD_CB2M_FILES"
2330                break
2331            fi
2332        done
2333        echo "   OpenAD exceptions:  "
2334    fi
2335    
2336  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2337  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2338  printf 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2339  printf 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2340  printf 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2341  printf 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2342  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2343    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2344  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2345  for d in $alldirs ; do  for d in $alldirs ; do
2346      deplist=      deplist=
2347      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2348      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2349        if test "x$OPENAD" != x ; then
2350            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2351        fi
2352      for sf in $sfiles ; do      for sf in $sfiles ; do
2353          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2354              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
# Line 2278  for d in $alldirs ; do Line 2383  for d in $alldirs ; do
2383                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2384                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2385                      case $extn in                      case $extn in
2386                          F)                        F)
2387                              echo    " \\"  >> srclist.inc                          echo    " \\"  >> F77srclist.tmp
2388                              printf " $sf" >> srclist.inc                          printf " $sf" >> F77srclist.tmp
2389                              ;;                          if test "x$OPENAD" != x ; then
2390                          F90)                              basename=${sf%%.F}
2391                              echo    " \\"  >> f90srclist.inc                              isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2392                              printf " $sf" >> f90srclist.inc                              if test -z "$isAD" ; then
2393                              ;;                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2394                          c)                                  if test -z "$toBeIgnored" ; then
2395                              echo    " \\"  >> csrclist.inc                                      echo    " \\"  >> nonADF77srclist.tmp
2396                              printf " $sf" >> csrclist.inc                                      printf " $sf" >> nonADF77srclist.tmp
2397                              ;;                                  else
2398                          h)                                      echo "    not to be compiled   :  $sf"
2399                              echo    " \\"  >> hlist.inc                                  fi
2400                              printf " $sf" >> hlist.inc                              else # file is initially listed as an AD file we want to exclude it
2401                              ;;                                   # or we want to retain the untransformed version
2402                          flow)                                  notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2403                              echo    " \\"  >> ad_flow_files.inc                                  untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2404                              printf " $sf" >> ad_flow_files.inc                                  if test -n "$notToBeTransformed"; then
2405                              ;;                                      echo "    not to be transformed:  $sf"
2406                      esac                                  fi
2407                  fi                                  if test -n "$untransformedVersionToBeKept" ; then
2408                                        echo "    original to be kept  :  $sf"
2409                                    fi    
2410                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2411                                        echo    " \\"  >> nonADF77srclist.tmp
2412                                        printf " $sf" >> nonADF77srclist.tmp
2413                                    fi
2414                                fi
2415                            fi
2416                            ;;
2417                        F90)
2418                            echo    " \\"  >> F90srclist.tmp
2419                            printf " $sf" >> F90srclist.tmp
2420                            ;;
2421                        c)
2422                            echo    " \\"  >> csrclist.tmp
2423                            printf " $sf" >> csrclist.tmp
2424                            ;;
2425                        h)
2426                            echo    " \\"  >> hsrclist.tmp
2427                            printf " $sf" >> hsrclist.tmp
2428                            ;;
2429                        flow)
2430                            echo    " \\"  >> ad_flow_files.tmp
2431                            printf " $sf" >> ad_flow_files.tmp
2432                            ;;
2433                       esac
2434                    fi
2435              fi              fi
2436          fi          fi
2437      done      done
2438      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2439          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2440            echo "" >> srclinks.tmp
2441          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2442          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2443          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2444    # This may happen when make thinks that a header file has to be "remade"
2445    # because a module it depends on has changed.  In this case we do nothing.
2446            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2447          fi
2448      fi      fi
2449  done  done
2450  rm -rf .links.tmp  rm -rf .links.tmp
2451  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2452  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2453  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2454  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2455  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2456    echo "" >> ad_flow_files.tmp
2457    
2458  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2459      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
# Line 2410  INCLUDES = ${INCLUDES} Line 2548  INCLUDES = ${INCLUDES}
2548  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2549  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2550  # Optim./debug for FC  # Optim./debug for FC
2551  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2552  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2553  # Optim./debug for FC  # Optim./debug for FC
2554  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2555  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2556    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2557  # Flags for CC  # Flags for CC
2558  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2559  # Files that should not be optimized  # Files that should not be optimized
# Line 2427  MAKEFILE=${MAKEFILE} Line 2566  MAKEFILE=${MAKEFILE}
2566    
2567  EOF  EOF
2568    
2569  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2570  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2571  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2572  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2573  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2574    cat ad_flow_files.tmp   >> $MAKEFILE
2575    
2576    rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2577    
2578  echo >> $MAKEFILE  echo >> $MAKEFILE
2579  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  
2580  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE  # add definitions for preprocessed sources
2581  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  # and note that not all systems allow case sensitive extensions
2582    # hence the $FS and $FS90 here.
2583    # for fixed format f90 files we use ff90 or FF90 resp
2584    # but these are not expected to be the original source files
2585    
2586    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2587    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2588    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2589    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2590  echo >> $MAKEFILE  echo >> $MAKEFILE
2591  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2592  echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
 rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
 rm -f ad_flow_files.inc  
2593    
2594  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2595    
2596  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2597  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2598          @echo Creating \$@ ...          @echo Creating \$@ ...
2599          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2600  depend:  depend:
2601          @make links          @make links
2602          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2603          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2604          -rm -f makedepend.out          -rm -f makedepend.out
2605    
# Line 2458  lib: libmitgcmuv.a Line 2607  lib: libmitgcmuv.a
2607    
2608  libmitgcmuv.a: \$(OBJFILES)  libmitgcmuv.a: \$(OBJFILES)
2609          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
2610            ar d   libmitgcmuv.a main.o
2611    
2612  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2613    
2614  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2615    
2616  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2617          @printf 'running ... '          @printf 'running ... '
2618          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2619    
2620  clean:  clean:
2621          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2622            -rm -rf *.o
2623            -rm -rf *.$FS *.flowdir
2624            -rm -rf *.f$FS90 *_mod.h *_mod.F90 *.FF90 *.mod-whirl ad_input*
2625            -rm -rf temp.sed
2626  Clean:  Clean:
2627          @make clean          @make clean
2628          @make cleanlinks          @make cleanlinks
2629          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES)
2630          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log f90mkdepend.log *.bak
2631            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2632  CLEAN:  CLEAN:
2633          @make Clean          @make Clean
2634          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2635          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2636          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2637          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2638            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2639          -rm -rf mnc_test_*          -rm -rf mnc_test_*
2640    
2641  #eh3 Makefile: makefile  #eh3 Makefile: makefile
# Line 2488  makefile: Line 2644  makefile:
2644  cleanlinks:  cleanlinks:
2645          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2646    
2647  # Special targets (SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2648  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2649          @echo Creating \$@ ...          @echo Creating \$@ ...
2650          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
# Line 2513  if test "x$EMBED_SRC" = xt ; then Line 2669  if test "x$EMBED_SRC" = xt ; then
2669    
2670  decode_files.o : EMBEDDED_FILES.h  decode_files.o : EMBEDDED_FILES.h
2671    
2672  ##  \$(F77FILES)  ##  \$(F77_PP_SRC_FILES)
2673  all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile  all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2674          @echo Creating \$@ ...          @echo Creating \$@ ...
2675          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2676          -rm -f all_fF.tar.gz          -rm -f all_fF.tar.gz
2677          -gzip all_fF.tar          -gzip all_fF.tar
2678    
# Line 2540  cat >>$MAKEFILE <<EOF Line 2696  cat >>$MAKEFILE <<EOF
2696          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2697  .F90.$FS90:  .F90.$FS90:
2698          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2699    .FF90.f$FS90:
2700            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2701  .$FS90.o:  .$FS90.o:
2702          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2703    .f$FS90.o:
2704            cp \$< \$(basename  \$<).f90
2705            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2706  .c.o:  .c.o:
2707          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2708    .flow.flowdir:
2709            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2710    
2711  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2712  .F.p:  .F.p:
# Line 2551  cat >>$MAKEFILE <<EOF Line 2714  cat >>$MAKEFILE <<EOF
2714  .p.$FS:  .p.$FS:
2715          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2716    
2717    EOF
2718    
2719  #=========================================  #=========================================
2720  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2721    #===  for TAMC/TAF  ======================
2722    
2723    if test "x$OPENAD" == x ; then
2724    
2725    cat >>$MAKEFILE <<EOF
2726    
2727  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2728  TAF            = ${TAF}  TAF            = ${TAF}
# Line 2576  done Line 2746  done
2746  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2747  echo >> $MAKEFILE  echo >> $MAKEFILE
2748  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2749  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2750  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2751      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2752      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2753  done  done
2754  echo >> $MAKEFILE  echo >> $MAKEFILE
2755  rm -f ad_files  rm -f adSrcFiles.tmp
2756    
2757  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2758    
# Line 2591  adall: \$(EXE_AD) Line 2761  adall: \$(EXE_AD)
2761  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
2762  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
2763    
2764  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2765          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2766          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2767          -rm -f ad_config.template          -rm -f ad_config.template
2768          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2769          @make \$(AD_FLOW_FILES)          @make \$(FLOFILES)
2770          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS          cat \$(FLOFILES) \$(AD_FILES) > ad_input_code.$FS
2771    
2772  ad_taf_output.$FS: ad_input_code.$FS  ad_taf_output.$FS: ad_input_code.$FS
2773          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2774            ls -l ad_input_code_ad.$FS
2775          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2776    
2777  adtafonly:  adtafonly:
2778          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2779            ls -l ad_input_code_ad.$FS
2780          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2781    
2782  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
# Line 2628  ftlall: ftl_taf Line 2800  ftlall: ftl_taf
2800  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
2801  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
2802    
2803  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2804          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2805          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2806          -rm -f ftl_config.template          -rm -f ftl_config.template
2807          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2808          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2809          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2810    
2811  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_taf_output.$FS: ftl_input_code.$FS
2812          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2813            ls -l ftl_input_code_ftl.$FS
2814          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2815    
2816  ftltafonly:  ftltafonly:
2817          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2818            ls -l ftl_input_code_ftl.$FS
2819          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2820    
2821  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
# Line 2679  svd_touch: Line 2853  svd_touch:
2853          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2854          -rm -f ftl_config.template          -rm -f ftl_config.template
2855    
2856  #=========================================  EOF
2857    
2858    fi
2859    
2860    #===  for OpenAD  ========================
2861    
2862    if test "x$OPENAD" != x ; then
2863    
2864    # ============ begin OpenAD specific section ==============
2865    
2866    cat >>$MAKEFILE <<EOF
2867    
2868    # all the source files linked from the various locations:
2869    ALL_LINKED_FILES= \
2870    \$(F77_SRC_FILES) \
2871    \$(C_SRC_FILES) \
2872    \$(H_SRC_FILES) \
2873    \$(F90_SRC_FILES) \
2874    \$(SPECIAL_FILES)
2875    
2876    ifndef OPENADROOT
2877      \$(error "Error:  environment variable OPENADROOT not defined!")
2878    endif
2879    
2880    ifndef XAIFSCHEMAROOT
2881      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2882    endif
2883    
2884    ifndef XAIFBOOSTERROOT
2885      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2886    endif
2887    
2888    EOF
2889    
2890    echo "  Add the source list for common block to module conversion "
2891    echo >> $MAKEFILE
2892    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2893    for i in `cat ${OAD_CB2M_FILES}` ; do
2894      echo    " \\" >> $MAKEFILE
2895      printf " $i" >> $MAKEFILE
2896    done
2897    echo >> $MAKEFILE
2898    
2899    echo "  Add the source list for AD code generation"
2900    echo >> $MAKEFILE
2901    printf "AD_FILES = " >> $MAKEFILE
2902    for i in `cat ${OAD_CB2M_FILES}` ; do
2903      echo    " \\" >> $MAKEFILE
2904      printf " ${i}_mod.f$FS90" >> $MAKEFILE
2905    done
2906    AD_FILES=`cat adSrcFiles.tmp`
2907    for i in $AD_FILES ; do
2908      basename=${i%%.f}
2909      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
2910      if test -z "$toBeIgnored" ; then
2911        echo    " \\" >> $MAKEFILE
2912        printf " $i" >> $MAKEFILE
2913      fi
2914    done
2915    echo >> $MAKEFILE
2916    rm -f adSrcFiles.tmp
2917    
2918    cat >>$MAKEFILE <<EOF
2919    
2920    adAll: \$(EXE_AD)
2921    .PHONY: adAll
2922    
2923    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
2924    
2925    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
2926    
2927    .PHONY: adDepend
2928    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
2929            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2930            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2931            -rm -f makedepend.out
2932    
2933    OPENAD_SUPPORT_F90_SRC_FILES = \
2934    w2f__types.F90 \
2935    OAD_active.F90 \
2936    OAD_cp.F90 \
2937    OAD_rev.F90 \
2938    OAD_tape.F90        
2939    
2940    OPENAD_SUPPORT_C_SRC_FILES = \
2941    iaddr.c \
2942    timeRatio.c
2943    
2944    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
2945            cat \$^ > \$@
2946    
2947    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
2948            cat \$^ > \$@
2949    
2950    f95_test.out: f95_test_mods.f90 f95_test.f90
2951            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
2952            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
2953    
2954    AD_OBJ_FILES=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) all_mods.xb.x2w.w2f.pp.o  ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.o \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
2955    
2956    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(AD_OBJ_FILES)
2957            @echo Creating \$@ ...
2958            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES) \$(LIBS)
2959    
2960    # makefile debug rule
2961    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
2962    .PHONY: openad
2963    
2964    # create the module files
2965    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
2966            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
2967    
2968    # create the header files
2969    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
2970            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
2971    
2972    # change everybody else to use the new module files:
2973    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
2974            ../OAD_support/cb2mUseModules.bash $< ${MPI}
2975    
2976    # makefile debug rule
2977    small_f: \$(CB2M_F90_PP_SRC_FILES)
2978    .PHONY: small_f
2979    
2980    ad_output.txt: \$(EXE_AD)
2981            @printf 'linking data files ... '
2982            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
2983            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
2984            @printf 'running ... '
2985            @./\$(EXE_AD) > \$@
2986    
2987    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
2988    ad_input_code.f$FS90: ../OAD_support/maxMinDefs.f \$(CB2M_AD_FILES)
2989            cat \$^ > \$@
2990    
2991    # strip all comments and blanks to reduce
2992    # the file size in order to reduce perl's memory requirements
2993    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
2994            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
2995    
2996    # mfef90 preprocessing
2997    # expand statement functions
2998    # expose mfef90 specific substring handling
2999    # add the w2f__types module
3000    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3001            ./mfef90 -r8 -z -F -N132 \$<
3002            mv \$<.B \$(basename \$<).B
3003            ./whirl2f -openad \$(basename \$<).B
3004            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3005    
3006    # canonicalizer
3007    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3008            ./preProcess.py -H \$< -o \$@
3009    
3010    # F -> WHIRL
3011    # note that the canonicalized version cuts off at col 72
3012    # doing this also for string constants which is ok as long
3013    # as we are in fixed mode and cut of exactly there.
3014    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3015    # characters respectively.
3016    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3017            ./mfef90 -r8 -z -F \$<
3018            mv \$<.B \$@
3019    
3020    # WHIRL -> XAIF
3021    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3022            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3023    
3024    # XAIF -> XAIF'
3025    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd openad_adm
3026            ./openad_adm -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3027    
3028    # XAIF' -> WHIRL'
3029    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3030            ./xaif2whirl --debug 1 --structured ad_input_code_sf.w2f.pre.B \$<
3031    
3032    # WHIRL' -> F'
3033    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3034            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3035    
3036    # insert template directives
3037    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3038            ../OAD_support/insertTemplateDir.bash \$< \$@
3039    
3040    # postprocess F'
3041    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 multi-pp.pl ../OAD_support/ad_inline.f \$(wildcard ../OAD_support/ad_template.*.f)
3042            perl multi-pp.pl -inline=../OAD_support/ad_inline.f \$<
3043            # the postprocessor still gets the name wrong
3044            cat \$<.pp | sed 's/RETURN//' > \$@
3045    
3046    # extract all transformed modules
3047    all_mods.xb.x2w.w2f.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3048            cat \$< | sed -n '/MODULE /,/END MODULE/p' > \$@
3049    
3050    # remove the transformed globals module from the
3051    # transformed ad_input_code file
3052    # and remove for now the duplicate variables
3053    # and fix 2 data statements
3054    ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3055            cat \$< | sed '/MODULE /,/END MODULE/d' | sed '/^      INTEGER(w2f__i4) DOLOOP_UB/d' > \$@
3056    
3057    # setup some links
3058    %.xsd:
3059            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3060    
3061    mfef90:
3062            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3063    
3064    # link the support files:
3065    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3066            \$(LN) ../OAD_support/\$@ .
3067    
3068    whirl2xaif xaif2whirl:
3069            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3070    
3071    %.pl:
3072            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3073    
3074    preProcess.py:
3075            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3076    
3077    whirl2f whirl2f_be:
3078            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3079    
3080    openad_adm:
3081            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/test/t \$@
3082    
3083    # ============ end OpenAD specific section ==============
3084    
3085  EOF  EOF
3086    
3087    fi
3088    
3089    #=========================================
3090    
3091  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3092      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3093  fi  fi

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