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revision 1.173 by jmc, Sun Jul 20 18:01:05 2008 UTC revision 1.277 by jmc, Tue Jan 12 20:43:00 2016 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -oad | --oad
23              Generate a Makefile for an OpenAD built
24    
25        -nocat4ad | -dog4ad | -ncad | -dad
26              do not concatenate (cat) source code sent to TAF
27              resulting in compilation of multiple files
28    
29        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
30          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
31              Use "NAME" as the adoptfile.  By default, the file at
32              "tools/adjoint_options/adjoint_oad" (for OpenAD built) or
33              "tools/adjoint_options/adjoint_default" will be used.
34    
35        -nooptfile | --nooptfile
36          -optfile NAME | --optfile NAME | -of NAME | --of NAME
37          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
38              Use "NAME" as the optfile.  By default, an attempt will be
39              made to find an appropriate "standard" optfile in the
40              tools/build_options/ directory.
41    
42        -pdepend NAME | --pdepend NAME
43          -pdepend=NAME | --pdepend=NAME
44              Get package dependency information from "NAME".
45    
46        -pgroups NAME | --pgroups NAME
47          -pgroups=NAME | --pgroups=NAME
48              Get the package groups information from "NAME".
49    
50        -bash NAME
51              Explicitly specify the Bourne or BASH shell to use
52    
53        -make NAME | -m NAME
54          --make=NAME | -m=NAME
55              Use "NAME" for the MAKE program. The default is "make" but
56              many platforms, "gmake" is the preferred choice.
57    
58        -makefile NAME | -mf NAME
59          --makefile=NAME | -mf=NAME
60              Call the makefile "NAME".  The default is "Makefile".
61    
62        -makedepend NAME | -md NAME
63          --makedepend=NAME | -md=NAME
64              Use "NAME" for the MAKEDEPEND program.
65    
66        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
67          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
68              Specify the location of the MITgcm ROOTDIR as "NAME".
69              By default, genamke will try to find the location by
70              looking in parent directories (up to the 5th parent).
71    
72        -mods NAME | --mods NAME | -mo NAME | --mo NAME
73          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
74              Here, "NAME" specifies a list of directories that are
75              used for additional source code.  Files found in the
76              "mods list" are given preference over files of the same
77              name found elsewhere.
78    
79        -disable NAME | --disable NAME
80          -disable=NAME | --disable=NAME
81              Here "NAME" specifies a list of packages that we don't
82              want to use.  If this violates package dependencies,
83              genamke will exit with an error message.
84    
85        -enable NAME | --enable NAME
86          -enable=NAME | --enable=NAME
87              Here "NAME" specifies a list of packages that we wish
88              to specifically enable.  If this violates package
89              dependencies, genamke will exit with an error message.
90    
91        -standarddirs NAME | --standarddirs NAME
92          -standarddirs=NAME | --standarddirs=NAME
93              Here, "NAME" specifies a list of directories to be
94              used as the "standard" code.
95    
96        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
97          -fc=NAME | --fc=NAME
98              Use "NAME" as the fortran compiler.  By default, genmake
99              will search for a working compiler by trying a list of
100              "usual suspects" such as g77, f77, etc.
101    
102        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
103              Use "NAME" as the C compiler.  By default, genmake
104              will search for a working compiler by trying a list of
105              "usual suspects" such as gcc, c89, cc, etc.
106    
107        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
108              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
109              *only* works if CPP_EEOPTIONS.h allows this.
110    
111        -ignoretime | -ignore_time | --ignoretime | --ignore_time
112              Ignore all the "wall clock" routines entirely.  This will
113              not in any way hurt the model results -- it simply means
114              that the code that checks how long the model spends in
115              various routines will give junk values.
116    
117        -ts | --ts
118              Produce timing information per timestep
119        -papis | --papis
120              Produce summary MFlop/s (and IPC) with PAPI per timestep
121        -pcls | --pcls
122              Produce summary MFlop/s etc. with PCL per timestep
123        -foolad | --foolad
124              Fool the AD code generator
125        -papi | --papi
126              Performance analysis with PAPI
127        -pcl | --pcl
128              Performance analysis with PCL
129        -hpmt | --hpmt
130              Performance analysis with the HPM Toolkit
131    
132        -ieee | --ieee
133              use IEEE numerics.  Note that this option *only* works
134              if it is supported by the OPTFILE that is being used.
135        -devel | --devel
136              Add additional warning and debugging flags for development
137              (if supported by the OPTFILE); also switch to IEEE numerics.
138        -gsl | --gsl
139              Use GSL to control floating point rounding and precision
140    
141        -mpi | --mpi
142              Include MPI header files and link to MPI libraries
143        -mpi=PATH | --mpi=PATH
144              Include MPI header files and link to MPI libraries using MPI_ROOT
145              set to PATH. i.e. Include files from \$PATH/include, link to libraries
146              from \$PATH/lib and use binaries from \$PATH/bin.
147    
148        -omp | --omp
149              Activate OpenMP code + use Compiler option OMPFLAG
150        -omp=OMPFLAG | --omp=OMPFLAG
151              Activate OpenMP code + use Compiler option OMPFLAG
152    
153        -es | --es | -embed-source | --embed-source
154              Embed a tarball containing the full source code
155              (including the Makefile, etc.) used to build the
156              executable [off by default]
157    
158        -ds | --ds
159              Report genmake internal variables status (DUMPSTATE)
160              to file "genmake_state" (for debug purpose)
161    
162      While it is most often a single word, the "NAME" variables specified
163      above can in many cases be a space-delimited string such as:
164    
165        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
166        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
167        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
168    
169      which, depending upon your shell, may need to be single-quoted.
170    
171      For more detailed genmake documentation, please see:
172    
173        http://mitgcm.org/public/devel_HOWTO/
174    
175    EOF
176    
177        exit 1
178    }
179    
180  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
181  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
182  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
183      cpp_options=$1      cpp_options=$1
184      pkg=$2      pkg=$2
185      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
186      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
187      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
188      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"  
189  }  }
190    
191  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
192  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
193  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
194      cpp_options=$1      cpp_options=$1
195      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
196      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"  
197  }  }
198    
199  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 42  test_for_mpi_in_cpp_eeoptions() { Line 201  test_for_mpi_in_cpp_eeoptions() {
201  test_for_string_in_file() {  test_for_string_in_file() {
202      file=$1      file=$1
203      strng=$2      strng=$2
204      grep -i "$strng" $file > /dev/null 2>&1      grep "$strng" $file > /dev/null 2>&1
205      RETVAL=$?      RETVAL=$?
206      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
207          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
208          grep -i "$strng" $file          grep -i "$strng" $file
209          exit 99          exit 99
210      fi      fi
211      return 0      return 0
# Line 56  test_for_string_in_file() { Line 215  test_for_string_in_file() {
215  # the package list.  # the package list.
216  expand_pkg_groups() {  expand_pkg_groups() {
217      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
218      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
219          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > $TMP.p1
220          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat $TMP.p1 | $AWK '(NF>2 && $2==":"){ print $0 }' > $TMP.p2
221          matched=0          matched=0
222          for i in $PACKAGES ; do          for i in $PACKAGES ; do
223              line=`grep "^ *$i" ./p2.tmp`              line=`grep "^ *$i" $TMP.p2`
224              RETVAL=$?              RETVAL=$?
225              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
226                  matched=1                  matched=1
227                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
228                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
229                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
230              else              else
231                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
232              fi              fi
233          done          done
234          PACKAGES=$new_packages          PACKAGES=$new_packages
235          rm -f ./p[1,2].tmp          rm -f $TMP.p[1,2]
236          return $matched          return $matched
237      else      else
238          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
# Line 110  EOF Line 268  EOF
268              check_for_broken_Ff              check_for_broken_Ff
269          else          else
270              cat <<EOF 2>&1              cat <<EOF 2>&1
271  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
272    (fails the "cp" test) and this program cannot find a suitable    (fails the "cp" test) and this program cannot find a suitable
273    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
274    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
275    
276  EOF  EOF
# Line 137  EOF Line 295  EOF
295  .F.$tfs:  .F.$tfs:
296          $LN \$< \$@          $LN \$< \$@
297  EOF  EOF
298      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
299      RETVAL=$?      RETVAL=$?
300      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
301          if test "x$FS" = x ; then          if test "x$FS" = x ; then
# Line 145  EOF Line 303  EOF
303              FS90='fr9'              FS90='fr9'
304              check_for_broken_Ff              check_for_broken_Ff
305          else          else
306              cat <<EOF 2>&1              echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
307  ERROR: Your file system cannot distinguish between *.F and *.f files              echo "       see simple makefile: '$MAKEFILE' (left here)"
308    (fails the "make/ln" test) and this program cannot find a suitable              echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
309    replacement extension.  Please try a different build environment or              echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
310    contact the <MITgcm-support@mitgcm.org> list for help.              echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
311                echo ""
 EOF  
312              exit -1              exit -1
313              return              return
314          fi          fi
# Line 165  EOF Line 322  EOF
322      return      return
323  }  }
324    
   
325  look_for_makedepend()  {  look_for_makedepend()  {
326    
327      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
# Line 176  look_for_makedepend()  { Line 332  look_for_makedepend()  {
332      #      #
333      #    1) a makedepend implementation shipped with the cyrus-imapd      #    1) a makedepend implementation shipped with the cyrus-imapd
334      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
335      #      #    2) a local tools/xmakedepend shell script
     #    2) a known-buggy xmakedpend shell script  
336      #      #
337      #  So the choices are, in order:      #  So the choices are, in order:
     #  
338      #    1) use the user-specified program      #    1) use the user-specified program
339      #    2) use a system-wide default      #    2) use the local xmakedepend script (get all dependencies, but slower)
340      #    3) locally build and use the cyrus implementation      #    3) use a system-wide default
341      #    4) fall back to the buggy local xmakedpend script      #    4) locally build and use the cyrus makedepend
342        #             (faster, but can miss some dependencies)
343      #      #
344        echo >> $LOGFILE
345        echo "running: look_for_makedepend()" >> $LOGFILE
346        if test "x${MAKEDEPEND}" != x ; then
347            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
348            RETVAL=$?
349            if test x"$RETVAL" = x0 ; then
350                build_cyrus_makedepend
351                RETVAL=$?
352                if test "x$RETVAL" != x0 ; then
353                    echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
354                    MAKEDEPEND=
355                fi
356            else
357                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
358                RETVAL=$?
359                if test "x$RETVAL" = x0 ; then
360                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
361                fi
362                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
363            fi
364        fi
365      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
         which makedepend > /dev/null 2>&1  
         RV0=$?  
366          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
367          #  echo 'MAKEFILE="'$MAKEFILE'"'          #  echo 'MAKEFILE="'$MAKEFILE'"'
368          cat <<EOF >> $MAKEFILE          cat <<EOF >> $MAKEFILE
369  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
370  #  #
371  #   Some "makedepend" implementations will die if they cannot  #   Some "makedepend" implementations will die if they cannot
372  #   find a Makefile -- so this file is here to gives them an  #   find a Makefile -- so this file is here to gives them an
373  #   empty one to find and parse.  #   empty one to find and parse.
374  EOF  EOF
375          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
# Line 204  EOF Line 378  EOF
378        stop        stop
379        end        end
380  EOF  EOF
381          makedepend genmake_tc.f > /dev/null 2>&1          $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
382          RV1=$?          RV1=$?
383            which makedepend > /dev/null 2>&1
384            RV2=$?
385            if test "x${RV2}" = x0 ; then
386                makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
387                RV3=$? ; loc_msg='not working.'
388            else RV3=$RV2 ; loc_msg='not found.'
389            fi
390          test -f $MAKEFILE  &&  rm -f $MAKEFILE          test -f $MAKEFILE  &&  rm -f $MAKEFILE
391          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
392          if test "x${RV0}${RV1}" = x00 ; then          echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
393            if test "x${RV1}" = x0 ; then
394                MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
395                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
396            elif test "x${RV3}" = x0 ; then
397                echo "    local tools/xmakedepend not working. Use system-default makedepend"
398              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
399                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
400          else          else
401              echo "    a system-default makedepend was not found."              echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
402                            echo -n "    Try to build cyrus-makedepend ..."
403              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
404              build_cyrus_makedepend              build_cyrus_makedepend
405              RETVAL=$?              RETVAL=$?
406              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" = x0 ; then
407                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'                  echo "  Works"
408                else
409                    echo "  Fails" ; echo "" >> $LOGFILE
410                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
411                    echo ""
412                    exit -1
413                    return
414              fi              fi
             rm -f ./genmake_cy_md  
         fi  
     else  
         #  echo "MAKEDEPEND=${MAKEDEPEND}"  
         echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1  
         RETVAL=$?  
         if test x"$RETVAL" = x0 ; then  
             build_cyrus_makedepend  
415          fi          fi
416      fi      fi
417  }  }
418    
   
419  build_cyrus_makedepend()  {  build_cyrus_makedepend()  {
420        echo >> $LOGFILE
421        echo "running: build_cyrus_makedepend()" >> $LOGFILE
422      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
423      (      (
424          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
425              &&  ./configure > /dev/null 2>&1  \              &&  ./configure > /dev/null 2>&1  \
426              &&  make > /dev/null 2>&1              &&  $MAKE > /dev/null 2>&1
427          if test -x ./makedepend.exe ; then          if test -x ./makedepend.exe ; then
428              $LN ./makedepend.exe ./makedepend              $LN ./makedepend.exe ./makedepend
429          fi          fi
# Line 249  build_cyrus_makedepend()  { Line 435  build_cyrus_makedepend()  {
435      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
436      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
437          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
438            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
439          return 0          return 0
440      else      else
441          echo "WARNING: unable to build cyrus-imapd-makedepend"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
442          return 1          return 1
443      fi      fi
444  }  }
445    
   
446  build_embed_encode()  build_embed_encode()
447  {  {
448      printf "  building the embed-encode utility...  "      printf "  building the embed-encode utility...  "
449      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
450          if test ! -d "$ROOTDIR/tools/embed_encode" ; then          if test ! -d "$ROOTDIR/tools/embed_encode" ; then
451              echo              echo
452              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
453              echo              echo
454              EMBED_SRC=f              EMBED_SRC=f
455              return 1              return 1
456          fi          fi
457          clist="cc gcc c89 $CC"          clist="cc gcc c89 $CC"
458          for ic in $clist ; do          for ic in $clist ; do
459              comm="$ic -o encode_files encode_files.c"              comm="$ic -o encode_files encode_files.c"
460              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
461              RETVAL=$?              RETVAL=$?
462              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
463                  echo "OK"                  echo "OK"
                 DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
464                  return 0                  return 0
465              fi              fi
466          done          done
# Line 287  build_embed_encode() Line 472  build_embed_encode()
472          return 1          return 1
473      fi      fi
474      echo "OK"      echo "OK"
     DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
475  }  }
476    
477    #  look for possible C compilers
478  # Guess possible config options for this host  look_for_C_compilers() {
479  find_possible_configs()  {      echo >> $LOGFILE
480        echo "running: look_for_C_compilers()" >> $LOGFILE
481      tmp1=`uname`"_"`uname -m`      rm -f ./genmake_hello.c  ./genmake_hello
482      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat >> genmake_hello.c << EOF
     tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`  
     tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`  
     tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`  
     tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`  
     PLATFORM=$tmp3  
     echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32  
     OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`  
     echo "  The platform appears to be:  $PLATFORM"  
       
     echo "test" > test  
     ln -s ./test link  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         LN="ln -s"  
     else  
         echo "Error: \"ln -s\" does not appear to work on this system!"  
         echo "  For help, please contact <MITgcm-support@mitgcm.org>."  
         exit 1  
     fi  
     rm -f test link  
   
     if test "x$CPP" = x ; then  
         CPP="cpp -traditional -P"  
     fi  
   
     look_for_makedepend  
   
     #================================================================  
     #  look for possible C compilers  
     tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"  
     p_CC=  
     for c in $tmp ; do  
         rm -f ./genmake_hello.c  ./genmake_hello  
         cat >> genmake_hello.c << EOF  
483  #include <stdio.h>  #include <stdio.h>
484  int main(int argc, char **argv) {  int main(int argc, char **argv) {
485    printf("Hello!\n");    printf("Hello!\n");
486    return 0;    return 0;
487  }  }
488  EOF  EOF
489          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
490        p_CC=
491        for c in $tmp ; do
492            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
493            echo $COMM >> $LOGFILE
494            $COMM >> $LOGFILE 2>&1
495          RETVAL=$?          RETVAL=$?
496          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
497                echo " $c test successful" >> $LOGFILE
498              p_CC="$p_CC $c"              p_CC="$p_CC $c"
499          fi          fi
500      done      done
# Line 354  Error: No C compilers were found in your Line 510  Error: No C compilers were found in your
510  EOF  EOF
511          exit 1          exit 1
512      else      else
513          echo "  The possible C compilers found in your path are:"          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
         echo "   "$p_CC  
514          if test "x$CC" = x ; then          if test "x$CC" = x ; then
515              CC=`echo $p_CC | $AWK '{print $1}'`              CC=`echo $p_CC | $AWK '{print $1}'`
516              echo "  Setting C compiler to: "$CC              echo "  Setting C compiler to: "$CC
517          fi          fi
518      fi      fi
519        echo " --> set CC='$CC'" >> $LOGFILE
520    }
521    
522    # Guess possible config options for this host
523    find_possible_optfile()  {
524    
525        echo >> $LOGFILE
526        echo "running: find_possible_optfile()" >> $LOGFILE
527        tmp1=`uname`"_"`uname -m`
528        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
529        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
530        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
531        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
532        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
533        PLATFORM=$tmp3
534        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
535        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
536        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
537    
538      #================================================================      #================================================================
539      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
540      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"      echo "  look for possible FORTRAN compilers" >> $LOGFILE
541        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
542      p_FC=      p_FC=
543      for c in $tmp ; do      rm -f ./genmake_hello.f
544          rm -f ./hello.f ./hello      cat >> genmake_hello.f <<EOF
         cat >> hello.f <<EOF  
545        program hello        program hello
546        do i=1,3        do i=1,3
547          print *, 'hello world : ', i          print *, 'hello world : ', i
548        enddo        enddo
549        end        end
550  EOF  EOF
551          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
552            COMM="$f -o genmake_hello genmake_hello.f"
553            echo $COMM >> $LOGFILE
554            $COMM >> $LOGFILE 2>&1
555          RETVAL=$?          RETVAL=$?
556          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
557              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
558                p_FC="$p_FC $f"
559          fi          fi
560      done      done
561      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
562      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
563          cat 1>&2 <<EOF          cat 1>&2 <<EOF
564    
# Line 394  Error: No Fortran compilers were found i Line 571  Error: No Fortran compilers were found i
571  EOF  EOF
572          exit 1          exit 1
573      else      else
574          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
575      fi      fi
576    
577      #  Use the first of the compilers found in the current PATH      #  Use the first of the compilers found in the current PATH
# Line 404  EOF Line 580  EOF
580          for i in $p_FC ; do          for i in $p_FC ; do
581              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
582              if test -r $OPTFILE ; then              if test -r $OPTFILE ; then
583                  echo "  Setting OPTFILE to: "$OPTFILE                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
584                  break                  break
585              fi              fi
586          done          done
# Line 413  EOF Line 589  EOF
589      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
590          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
591          if test ! -r $OPTFILE ; then          if test ! -r $OPTFILE ; then
592               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
593          fi          fi
594      fi      fi
595  #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #   for i in $p_FC ; do  
 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
 #if test -r $p_OF ; then  
 #    OPTFILE=$p_OF  
 #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #    break  
 #fi  
 #   done  
596      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
597          cat 1>&2 <<EOF          cat 1>&2 <<EOF
598    
# Line 442  Error: No options file was found in:  $R Line 608  Error: No options file was found in:  $R
608  EOF  EOF
609          exit 1          exit 1
610      fi      fi
611        }
 #     # look for possible MPI libraries  
 #     mpi_libs=  
 #     mpi_fort=`which mpif77 2>/dev/null`  
 #     RETVAL=$?  
 #     if test "x${RETVAL}" = x0 ; then  
 #       cat >>test.f <<EOF  
 #       PROGRAM HELLO  
 #       DO 10, I=1,10  
 #       PRINT *,'Hello World'  
 #    10 CONTINUE  
 #       STOP  
 #       END  
 # EOF  
 #       eval "$mpi_fort -showme test.f > out"  
 #       RETVAL=$?  
 #       if test "x${RETVAL}" = x0 ; then  
 #           a=`cat out`  
 #           for i in $a ; do  
 #               case $i in  
 #                   -*)  
 #                       mpi_libs="$mpi_libs $i" ;;  
 #               esac  
 #           done  
 #           echo "The MPI libs appear to be:"  
 #           echo "  "$mpi_libs  
 #       fi  
 #       rm -f test.f out  
 #     fi  
612    
613    #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
614    #  checking for additional included headers (in case of chain of included header)
615    mpi_headers_do_local_copy() {
616    
617        dBug=0
618        rm -rf ./mpi_headers
619        if test -d $MPIINCLUDEDIR ; then
620    
621            #----- check for additional headers (chain of included headers)
622            echo -n '  Check MPI headers ... '
623            listIni=$MPI_HEADER_FILES
624            echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
625            outp=$?
626            #- always check mpif.h (the only mpi-header included in standard MITgcm code)
627            if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
628            if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
629    
630            doCheck=1 ; list2copy='' ; list2check=$listIni
631            while test $doCheck = 1 ; do
632              newList=''
633              for i in $list2check ; do
634                if test -f $MPIINCLUDEDIR/$i ; then
635                  newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
636                    sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
637                  if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
638                  for j in $newInc ; do
639                    echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
640                    outp=$?
641                    if test $outp != 0 ; then
642                      if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
643                      newList="$newList $j"
644                    fi
645                  done
646                  if test $dBug = 1 ; then echo "" ; fi
647                fi
648              done
649              if test "x$newList" = x ; then doCheck=0
650              else list2check=$newList ; list2copy="$list2copy $newList"
651              fi
652            done
653            list2copy="$MPI_HEADER_FILES $list2copy"
654            if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
655    
656            #----- create local mpi_headers dir if we have files to copy
657            mkListInc=`echo $list2copy | wc -w`
658            if test $mkListInc != 0 ; then
659              echo 'create local "./mpi_headers" dir'
660              mkdir -p ./mpi_headers
661              INCLUDES="-I./mpi_headers $INCLUDES"
662              mkListInc=1
663            fi
664            if test "x$LOCAL_MPI_HEADERS" != x ; then mkListInc=0 ; fi
665    
666            #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
667            for i in $list2copy ; do
668              if test -f $MPIINCLUDEDIR/$i ; then
669                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
670                if test $i = 'mpif.h' ; then
671                    perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
672                fi
673                if test $mkListInc = 2 ; then
674                    LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
675                fi
676                if test $mkListInc = 1 ; then
677                    LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=2
678                fi
679              fi
680            done
681        else
682            echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a directory"
683            echo "WARNING: => skip checking for MPI headers (no ./mpi_headers dir)"
684    #       exit -1
685        fi
686  }  }
687    
688  #  Parse the package dependency information  #  Parse the package dependency information
# Line 480  get_pdepend_list()  { Line 691  get_pdepend_list()  {
691      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
692      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
693      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
694          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
695          > ./.pd_tmp          > ./.pd_tmp
696        RETVAL=$?
697        if test ! "x${RETVAL}" = x0 ; then
698          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
699          exit 1
700        fi
701      . ./.pd_tmp      . ./.pd_tmp
702      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
     printf "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME  
       -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME  
           Use "NAME" as the adoptfile.  By default, the file at  
           "tools/adjoint_options/adjoint_default" will be used.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -cc NAME | --cc NAME | -cc=NAME | --cc=NAME  
           Use "NAME" as the C compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as gcc, c89, cc, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -ignoretime | -ignore_time | --ignoretime | --ignore_time  
           Ignore all the "wall clock" routines entirely.  This will  
           not in any way hurt the model results -- it simply means  
           that the code that checks how long the model spends in  
           various routines will give junk values.  
   
     -ts | --ts  
           Produce timing information per timestep  
     -papis | --papis  
           Produce summary MFlop/s (and IPC) with PAPI per timestep  
     -pcls | --pcls  
           Produce summary MFlop/s etc. with PCL per timestep  
     -foolad | --foolad  
           Fool the AD code generator  
     -papi | --papi  
           Performance analysis with PAPI  
     -pcl | --pcl  
           Performance analysis with PCL  
     -hpmt | --hpmt  
           Performance analysis with the HPM Toolkit  
   
     -gsl | --gsl  
           Use GSL to control floating point rounding and precision  
     -devel | --devel  
           Add additional warning and debugging flags for development  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from \$PATH/include, link to libraries  
           from \$PATH/lib and use binaries from \$PATH/bin.  
   
     -es | --es | -embed-source | --embed-source  
           Embed a tarball containing the full source code  
           (including the Makefile, etc.) used to build the  
           executable [off by default]  
   
     -bash NAME  
           Explicitly specify the Bourne or BASH shell to use  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/devel_HOWTO/  
   
 EOF  
   
     exit 1  
703  }  }
704    
705  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
# Line 642  get_fortran_c_namemangling()  { Line 707  get_fortran_c_namemangling()  {
707    
708      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
709      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
710          return 0          return 0
711      fi      fi
712        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
713    
714      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
715        
716      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
717  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
718  EOF  EOF
719      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
720        echo ' '$COMM >> $LOGFILE
721        $COMM >> $LOGFILE 2>&1
722      RETVAL=$?      RETVAL=$?
723      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
724          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
725          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
726    
727  WARNING: C test compile fails   WARNING: C test compile fails
728  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
729  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
730  EOF  EOF
731          return 1          return 1
732      fi      fi
# Line 666  EOF Line 734  EOF
734      RETVAL=$?      RETVAL=$?
735      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
736          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
737          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
738    
739  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
740  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
741  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
742  EOF  EOF
743          return 1          return 1
744      fi      fi
# Line 680  EOF Line 748  EOF
748        call tsub( string )        call tsub( string )
749        end        end
750  EOF  EOF
751      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
752        echo ' '$COMM >> $LOGFILE
753        $COMM >> $LOGFILE 2>&1
754      RETVAL=$?      RETVAL=$?
755      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
756          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
757          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
758    
759  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
760  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
761  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
762  EOF  EOF
763          return 1          return 1
764      fi      fi
# Line 696  EOF Line 766  EOF
766      RETVAL=$?      RETVAL=$?
767      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
768          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
769          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
770    
771  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
772  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
773  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
774  EOF  EOF
775          return 1          return 1
776      fi      fi
# Line 726  EOF Line 796  EOF
796    
797      #  cleanup the testing files      #  cleanup the testing files
798      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
799    
800        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
801    }
802    
803  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
804        echo >> $LOGFILE
805        echo "running: check_HAVE_CLOC()" >> $LOGFILE
806      get_fortran_c_namemangling      get_fortran_c_namemangling
807      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
808  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 747  void FC_NAMEMANGLE(cloc) ( double *curti Line 820  void FC_NAMEMANGLE(cloc) ( double *curti
820  }  }
821  EOF  EOF
822      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
823      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
824      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
825      RET_C=$?      RET_C=$?
826      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
827        program hello        program hello
# Line 759  EOF Line 832  EOF
832        end        end
833  EOF  EOF
834      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
835      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
836      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
837      RET_F=$?      RET_F=$?
838      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
839      RETVAL=$?      RETVAL=$?
840      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
841          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
842      fi      fi
843      rm -f genmake_tc*      rm -f genmake_tc*
844        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
845  }  }
846    
   
847  check_HAVE_SIGREG()  {  check_HAVE_SIGREG()  {
848      if test ! "x$HAVE_SIGREG" = x ; then      if test ! "x$HAVE_SIGREG" = x ; then
849          return          return
850      fi      fi
851        echo >> $LOGFILE
852        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
853      get_fortran_c_namemangling      get_fortran_c_namemangling
854      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
855  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 808  void FC_NAMEMANGLE(sigreg) (int * aip) Line 882  void FC_NAMEMANGLE(sigreg) (int * aip)
882  }  }
883  EOF  EOF
884      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
885      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
886      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
887      RET_C=$?      RET_C=$?
888      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
889        program hello        program hello
# Line 819  EOF Line 893  EOF
893        call sigreg(anint)        call sigreg(anint)
894        end        end
895  EOF  EOF
896      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SIGREG()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
897      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
898      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
899      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
900      RETVAL=$?      RETVAL=$?
901      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
902          HAVE_SIGREG=t          HAVE_SIGREG=t
         DEFINES="$DEFINES -DHAVE_SIGREG"  
903      fi      fi
904      rm -f genmake_tc*      rm -f genmake_tc*
905        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
906  }  }
907    
   
908  check_HAVE_SETRLSTK()  {  check_HAVE_SETRLSTK()  {
     if test "x$HAVE_SETRLSTK" = xt ; then  
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
         return  
     fi    
909      if test ! "x$HAVE_SETRLSTK" = x ; then      if test ! "x$HAVE_SETRLSTK" = x ; then
910          return          return
911      fi      fi
912        echo >> $LOGFILE
913        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
914      get_fortran_c_namemangling      get_fortran_c_namemangling
915      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
916  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 858  void FC_NAMEMANGLE(setrlstk) () Line 927  void FC_NAMEMANGLE(setrlstk) ()
927  }  }
928  EOF  EOF
929      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
930      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
931      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
932      RET_C=$?      RET_C=$?
933      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
934        program hello        program hello
# Line 867  EOF Line 936  EOF
936        call setrlstk()        call setrlstk()
937        end        end
938  EOF  EOF
939      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
940      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
941      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
942      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
943      RETVAL=$?      RETVAL=$?
944      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
945          HAVE_SETRLSTK=t          HAVE_SETRLSTK=t
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
946      fi      fi
947      rm -f genmake_tc*      rm -f genmake_tc*
948        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
949  }  }
950    
   
951  check_HAVE_STAT()  {  check_HAVE_STAT()  {
952        echo >> $LOGFILE
953        echo "running: check_HAVE_STAT()" >> $LOGFILE
954      get_fortran_c_namemangling      get_fortran_c_namemangling
955      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
956  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 904  void FC_NAMEMANGLE(tfsize) ( int *nbyte Line 972  void FC_NAMEMANGLE(tfsize) ( int *nbyte
972  }  }
973  EOF  EOF
974      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
975      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
976      $COMM >> genmake_tc.log 2>&1      $COMM >> genmake_tc.log 2>&1
977      RET_C=$?      RET_C=$?
978      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
# Line 914  EOF Line 982  EOF
982        print *," HELLO WORLD", nbyte        print *," HELLO WORLD", nbyte
983        end        end
984  EOF  EOF
985      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_STAT()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
986      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
987      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
988      $COMM >> genmake_tc.log 2>&1      $COMM >> genmake_tc.log 2>&1
989      RETVAL=$?      RETVAL=$?
990      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
991          HAVE_STAT=t          HAVE_STAT=t
         DEFINES="$DEFINES -DHAVE_STAT"  
992      fi      fi
993      rm -f genmake_tc*      rm -f genmake_tc*
994        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
995  }  }
996    
   
997  check_netcdf_libs()  {  check_netcdf_libs()  {
998      if test ! "x$SKIP_NETCDF_CHECK" = x ; then      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
999          return          return
1000      fi      fi
1001      echo >> genmake_warnings      echo >> $LOGFILE
1002      echo "running: check_netcdf_libs()" >> genmake_warnings      echo "running: check_netcdf_libs()" >> $LOGFILE
1003      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
1004        program fgennc        program fgennc
1005  #include "netcdf.inc"  #include "netcdf.inc"
1006  EOF  EOF
1007      if test ! "x$MPI" = x ; then     #if test ! "x$MPI" = x ; then
1008          echo '#include "mpif.h"' >> genmake_tnc.F     #    echo '#include "mpif.h"' >> genmake_tnc.F
1009      fi     #fi
1010      cat <<EOF >> genmake_tnc.F      cat <<EOF >> genmake_tnc.F
1011        integer iret, ncid, xid        integer iret, ncid, xid
1012        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
# Line 952  EOF Line 1017  EOF
1017        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1018        end        end
1019  EOF  EOF
1020      echo "===  genmake_tnc.F  ===" > genmake_tnc.log      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
1021      cat genmake_tnc.F >> genmake_tnc.log      cat genmake_tnc.F >> genmake_tnc.log
1022      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log      echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
1023      RET_CPP=f      RET_CPP=f
1024      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
1025      echo "$COMM" >> genmake_tnc.log      echo "$COMM" >> genmake_tnc.log
# Line 970  EOF Line 1035  EOF
1035      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1036          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
1037      RET_COMPILE=$?      RET_COMPILE=$?
1038      cat genmake_tnc.log >> genmake_warnings      cat genmake_tnc.log >> $LOGFILE
1039    
1040      #EH3  Remove test program execution for machines that either disallow      #EH3  Remove test program execution for machines that either disallow
1041      #EH3  execution or cannot support it (eg. cross-compilers)      #EH3  execution or cannot support it (eg. cross-compilers)
# Line 981  EOF Line 1046  EOF
1046    
1047      if test "x$RET_COMPILE" = x0 ; then      if test "x$RET_COMPILE" = x0 ; then
1048          HAVE_NETCDF=t          HAVE_NETCDF=t
1049            echo "check_netcdf: successful" >> $LOGFILE
1050      else      else
1051          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
1052          echo "try again with added '-lnetcdf'" > genmake_tnc.log          echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1053          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1054          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1055          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
# Line 991  EOF Line 1057  EOF
1057              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1058              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1059          RET_COMPILE=$?          RET_COMPILE=$?
1060          cat genmake_tnc.log >> genmake_warnings          echo >> $LOGFILE
1061            cat genmake_tnc.log >> $LOGFILE
1062          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
1063              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
1064              HAVE_NETCDF=t              HAVE_NETCDF=t
1065                echo "check_netcdf: successful" >> $LOGFILE
1066          else          else
1067          # try again with "-lnetcdff" added to the libs          # try again with "-lnetcdff" added to the libs
1068              echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log              echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1069              echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log              echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1070              echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log              echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1071              echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log              echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
# Line 1005  EOF Line 1073  EOF
1073                  &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \                  &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1074                  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1                  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1075              RET_COMPILE=$?              RET_COMPILE=$?
1076              cat genmake_tnc.log >> genmake_warnings              echo >> $LOGFILE
1077                cat genmake_tnc.log >> $LOGFILE
1078              if test "x$RET_COMPILE" = x0 ; then              if test "x$RET_COMPILE" = x0 ; then
1079                  LIBS="$LIBS -lnetcdff -lnetcdf"                  LIBS="$LIBS -lnetcdff -lnetcdf"
1080                  HAVE_NETCDF=t                  HAVE_NETCDF=t
1081                    echo "check_netcdf: successful" >> $LOGFILE
1082              fi              fi
1083          fi          fi
1084      fi      fi
1085      rm -f genmake_tnc*      rm -f genmake_tnc*
1086        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1087    }
1088    
1089    check_lapack_libs()  {
1090        if test "x$CHECK_FOR_LAPACK" = xf ; then return ; fi
1091        echo >> $LOGFILE
1092        echo "running: check_lapack_libs()" >> $LOGFILE
1093        cat <<EOF > genmake_tla.F
1094          program fgenla
1095          integer info
1096          integer ipiv( 2 )
1097          double precision ab( 4, 2 ), b( 2 )
1098          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1099          data b / 1., 1. /
1100          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1101          IF (info .NE. 0) write(*,*) 'Error:', info
1102          write(*,*) b
1103          end
1104    EOF
1105        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1106        cat genmake_tla.F >> genmake_tla.log
1107        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1108        RET_CPP=f
1109        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1110        echo "$COMM" >> genmake_tla.log
1111        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1112        if test "x$RET_CPP" = xf ; then
1113            echo "  WARNING: CPP failed to pre-process the lapack test." \
1114                >> genmake_tla.log
1115            echo "    Please check that \$INCLUDES is properly set." \
1116                >> genmake_tla.log
1117        fi
1118        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1119        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1120        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1121            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1122        RET_COMPILE=$?
1123        cat genmake_tla.log >> $LOGFILE
1124    
1125        # test program execution not always possible (see check_netcdf_libs)
1126        #
1127        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1128        #RETVAL=$?
1129        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1130    
1131        if test "x$RET_COMPILE" = x0 ; then
1132            HAVE_LAPACK=t
1133            echo "check_lapack: successful" >> $LOGFILE
1134        else
1135            # try again with "-llapack" added to the libs
1136            echo "==> try again with added '-llapack'" > genmake_tla.log
1137            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1138            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1139            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1140            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1141                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1142                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1143            RET_COMPILE=$?
1144            echo >> $LOGFILE
1145            cat genmake_tla.log >> $LOGFILE
1146            if test "x$RET_COMPILE" = x0 ; then
1147                LIBS="$LIBS -llapack"
1148                HAVE_LAPACK=t
1149                echo "check_lapack: successful" >> $LOGFILE
1150            else
1151            # try again with "-lf77blas -lcblas" added to the libs
1152                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1153                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1154                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1155                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1156                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1157                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1158                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1159                RET_COMPILE=$?
1160                echo >> $LOGFILE
1161                cat genmake_tla.log >> $LOGFILE
1162                if test "x$RET_COMPILE" = x0 ; then
1163                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1164                    HAVE_LAPACK=t
1165                    echo "check_lapack: successful" >> $LOGFILE
1166                else
1167                # try again with "-latlas" added to the libs
1168                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1169                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1170                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1171                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1172                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1173                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1174                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1175                    RET_COMPILE=$?
1176                    echo >> $LOGFILE
1177                    cat genmake_tla.log >> $LOGFILE
1178                    if test "x$RET_COMPILE" = x0 ; then
1179                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1180                        HAVE_LAPACK=t
1181                        echo "check_lapack: successful" >> $LOGFILE
1182                    fi
1183                fi
1184            fi
1185        fi
1186        rm -f genmake_tla*
1187        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1188  }  }
1189    
1190    check_HAVE_FLUSH()  {
1191        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1192            return
1193        fi
1194        echo >> $LOGFILE
1195        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1196        cat <<EOF > genmake_tflsh.$FS
1197          program fgenflsh
1198          integer iounit
1199          character*9 fname
1200          iounit = 26
1201          fname = 'tmp.tflsh'
1202          open(iounit,FILE=fname,STATUS='unknown')
1203          write(iounit,*) 'genmake_tflsh: hello'
1204          call flush(iounit)
1205          close(iounit)
1206          end
1207    EOF
1208        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1209        cat genmake_tflsh.$FS >> genmake_tflsh.log
1210        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1211    
1212        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1213        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1214        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1215            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1216        RET_COMPILE=$?
1217    
1218        if test "x$RET_COMPILE" = x0 ; then
1219            HAVE_FLUSH=t
1220            #cat genmake_tflsh.log >> $LOGFILE
1221            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1222        else
1223            HAVE_FLUSH=f
1224            cat genmake_tflsh.log >> $LOGFILE
1225        fi
1226        rm -f genmake_tflsh*
1227        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1228    }
1229    
1230  ###############################################################################  ###############################################################################
1231  #   Sequential part of script starts here  #   Sequential part of script starts here
# Line 1038  ENABLE= Line 1248  ENABLE=
1248  DISABLE=  DISABLE=
1249  # MAKEFILE=  # MAKEFILE=
1250  # MAKEDEPEND=  # MAKEDEPEND=
1251  PDEPEND=  PKG_DEPEND=
1252  DUMPSTATE=t  PKG_GROUPS=
1253  PDEFAULT=  DUMPSTATE=f
1254  OPTFILE=  OPTFILE=
1255  INCLUDES="-I. $INCLUDES"  INCLUDES="-I. $INCLUDES"
1256  FFLAGS=  FFLAGS=
1257  FOPTIM=  FOPTIM=
1258  FEXTRAFLAGS=  FEXTRAFLAGS=
1259    USE_EXTENDED_SRC=
1260    EXTENDED_SRC_FLAG=
1261    GET_FC_VERSION=
1262  CFLAGS=  CFLAGS=
1263  KFLAGS1=  KFLAGS1=
1264  KFLAGS2=  KFLAGS2=
# Line 1056  NOOPTFILES= Line 1269  NOOPTFILES=
1269  NOOPTFLAGS=  NOOPTFLAGS=
1270  MPI=  MPI=
1271  MPIPATH=  MPIPATH=
1272    OMP=
1273    OMPFLAG=
1274    USE_R4=
1275  TS=  TS=
1276  PAPIS=  PAPIS=
1277  PCLS=  PCLS=
# Line 1067  GSL= Line 1283  GSL=
1283  DEVEL=  DEVEL=
1284  HAVE_TEST_L=  HAVE_TEST_L=
1285    
1286    # set this to "t" to enable lapack test
1287    CHECK_FOR_LAPACK=f
1288    
1289  # DEFINES checked by test compilation or command-line  # DEFINES checked by test compilation or command-line
1290  HAVE_SYSTEM=  HAVE_SYSTEM=
1291  HAVE_FDATE=  HAVE_FDATE=
# Line 1077  HAVE_STAT= Line 1296  HAVE_STAT=
1296  HAVE_NETCDF=  HAVE_NETCDF=
1297  HAVE_ETIME=  HAVE_ETIME=
1298  IGNORE_TIME=  IGNORE_TIME=
1299    HAVE_LAPACK=
1300    HAVE_FLUSH=
1301    
1302  MODS=  MODS=
1303  TOOLSDIR=  TOOLSDIR=
# Line 1084  SOURCEDIRS= Line 1305  SOURCEDIRS=
1305  INCLUDEDIRS=  INCLUDEDIRS=
1306  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1307    
1308    #- local config file
1309    gm_local="genmake_local"
1310    
1311  G2ARGS=  G2ARGS=
1312  BASH=  BASH=
1313  PWD=`pwd`  PWD=`pwd`
# Line 1099  MACHINE=`uname -a` Line 1323  MACHINE=`uname -a`
1323  EXECUTABLE=  EXECUTABLE=
1324  EXEHOOK=  EXEHOOK=
1325  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1326  IEEE=  IEEE=
1327  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1328      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
# Line 1108  FS= Line 1331  FS=
1331  FS90=  FS90=
1332    
1333  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1334    OPENAD=
1335  AD_OPTFILE=  AD_OPTFILE=
1336    CAT_SRC_FOR_TAF=1
1337  TAF=  TAF=
1338  AD_TAF_FLAGS=  AD_TAF_FLAGS=
1339  FTL_TAF_FLAGS=  FTL_TAF_FLAGS=
# Line 1120  FTL_TAF_FLAGS= Line 1345  FTL_TAF_FLAGS=
1345  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1346  TAMC_EXTRA=  TAMC_EXTRA=
1347    
1348    DIVA=
1349    MPIINCLUDEDIR=
1350    MPI_HEADER_FILES=
1351    LOCAL_MPI_HEADERS=
1352    
1353  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1354  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1355  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1356    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1357    
1358  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1359  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1360  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1361  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1362  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="TMP THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1363  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1364    
1365  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1366  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE OPENAD TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1367  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1368  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1369    
1370  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1371  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1372    
1373  cat <<EOF  cat <<EOF
1374    
1375  GENMAKE :  GENMAKE :
1376    
1377  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1378  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1379    or for more detail see the Developer's HOWTO manual at:
1380    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1381    
1382  EOF  EOF
1383    
1384    LOGFILE="genmake.log"
1385    #- clean-up previous genmake logfiles:
1386    rm -f genmake_state genmake_*optfile $LOGFILE
1387    
1388  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 printf "  getting local config information:  "  
 if test -f $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1389    
1390  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1391  #parse_options  #parse_options
1392  ac_prev=  ac_prev=
1393  for ac_option in "$@" ; do  for ac_option in "$@" ; do
# Line 1185  for ac_option in "$@" ; do Line 1400  for ac_option in "$@" ; do
1400          ac_prev=          ac_prev=
1401          continue          continue
1402      fi      fi
1403        
1404      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1405        
1406      case $ac_option in      case $ac_option in
1407            
1408          -help | --help | -h | --h)          -help | --help | -h | --h)
1409              usage ;;              usage ;;
1410            
1411          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1412              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1413          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1414              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1415          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1416              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1417            
1418            -oad | --oad)
1419                OPENAD="true" ; ALWAYS_USE_F90=1 ;;
1420            -nocat4ad | -dog4ad | -ncad | -dad)
1421                CAT_SRC_FOR_TAF=0 ;;
1422          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1423              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1424          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1425              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1426            
1427          -pdepend | --pdepend)          -pdepend | --pdepend)
1428              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1429          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1430              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1431            
1432          -pdefault | --pdefault)          -pgroups | --pgroups)
1433              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1434          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1435              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1436            
1437          -make | --make | -m | --m)          -make | --make | -m | --m)
1438              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1439          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1440              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1441            
1442          -bash | --bash)          -bash | --bash)
1443              ac_prev=BASH ;;              ac_prev=BASH ;;
1444          -bash=* | --bash=*)          -bash=* | --bash=*)
1445              BASH=$ac_optarg ;;              BASH=$ac_optarg ;;
1446            
1447          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1448              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1449          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
1450              MAKEDEPEND=$ac_optarg ;;              MAKEDEPEND=$ac_optarg ;;
1451            
1452          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -mf | --mf)
1453              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1454          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1455              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1456            
1457          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1458              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1459              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1460              echo              echo
1461              usage              usage
1462              ;;              ;;
1463            
1464          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1465              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1466          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1467              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1468            
1469          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1470              ac_prev=MODS ;;              ac_prev=MODS ;;
1471          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1472              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1473            
1474          -disable | --disable)          -disable | --disable)
1475              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1476          -disable=* | --disable=*)          -disable=* | --disable=*)
1477              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1478            
1479          -enable | --enable)          -enable | --enable)
1480              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1481          -enable=* | --enable=*)          -enable=* | --enable=*)
1482              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1483            
1484          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1485              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1486          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 1271  for ac_option in "$@" ; do Line 1490  for ac_option in "$@" ; do
1490  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1491  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1492  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1493            
1494          -cc | --cc)          -cc | --cc)
1495              ac_prev=CC ;;              ac_prev=CC ;;
1496          -cc=* | --cc=*)          -cc=* | --cc=*)
1497              CC=$ac_optarg ;;              CC=$ac_optarg ;;
1498            
1499          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1500              ac_prev=FC ;;              ac_prev=FC ;;
1501          -fc=* | --fc=*)          -fc=* | --fc=*)
1502              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1503            
1504          -fs | --fs)          -fs | --fs)
1505              ac_prev=FS ;;              ac_prev=FS ;;
1506          -fs=* | --fs=*)          -fs=* | --fs=*)
1507              FS=$ac_optarg ;;              FS=$ac_optarg ;;
1508            
1509          -fs90 | --fs90)          -fs90 | --fs90)
1510              ac_prev=FS90 ;;              ac_prev=FS90 ;;
1511          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1512              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
1513            
1514            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1515                USE_R4=true ;;
1516    
1517          -ieee | --ieee)          -ieee | --ieee)
1518              IEEE=true ;;              IEEE=true ;;
1519          -noieee | --noieee)          -noieee | --noieee)
1520              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1521            -devel | --devel)
1522                IEEE=true ; DEVEL=true ;;
1523            -gsl | --gsl)
1524                GSL=true ;;
1525    
1526          -ts | --ts)          -ts | --ts)
1527              TS=true ;;              TS=true ;;
# Line 1312  for ac_option in "$@" ; do Line 1538  for ac_option in "$@" ; do
1538          -hpmt | --hpmt)          -hpmt | --hpmt)
1539              HPMT=true ;;              HPMT=true ;;
1540    
         -gsl | --gsl)  
             GSL=true ;;  
   
         -devel | --devel)  
             DEVEL=true ;;  
   
1541          -mpi | --mpi)          -mpi | --mpi)
1542              MPI=true ;;              MPI=true ;;
1543          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1544              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1545              MPI=true ;;              MPI=true ;;
1546            
1547  #       -jam | --jam)          -omp | --omp)
1548  #           JAM=1 ;;              OMP=true ;;
1549  #       -nojam | --nojam)          -omp=* | --omp=*)
1550  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1551                        OMP=true ;;
1552    
1553          -ds | --ds)          -ds | --ds)
1554              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1555            
1556            -extra_flag | --extra_flag)
1557                ac_prev=FEXTRAFLAGS ;;
1558            -extra_flag=* | --extra_flag=*)
1559                FEXTRAFLAGS=$ac_optarg ;;
1560    
1561          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1562              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1563          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 1341  for ac_option in "$@" ; do Line 1567  for ac_option in "$@" ; do
1567              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1568          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1569              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1570            
1571          -ignoretime | -ignore_time | --ignoretime | --ignore_time)          -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1572              IGNORE_TIME="-DIGNORE_TIME" ;;              IGNORE_TIME="-DIGNORE_TIME" ;;
1573    
# Line 1352  for ac_option in "$@" ; do Line 1578  for ac_option in "$@" ; do
1578              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1579              usage              usage
1580              ;;              ;;
1581            
1582          *)          *)
1583              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1584              usage              usage
1585              ;;              ;;
1586            
1587      esac      esac
1588        
1589  done  done
1590    
1591    #TMP=./genmk_$$
1592    #- try to put temporary files in system-local /tmp dir
1593    TMP=/tmp/genmk_${USER}_$$
1594    touch $TMP ; retVal=$?
1595    if [ $retVal -eq 0 ] ; then
1596      if test ! -r $TMP ; then TMP=./genmk_$$ ; fi
1597    else
1598      TMP=./genmk_$$
1599    fi
1600    rm -f $TMP
1601    #echo "  temp files: $TMP.*"
1602    
1603    printf "  getting local config information:  "
1604    if test -f $gm_local ; then
1605        echo "using $gm_local"
1606        . $gm_local
1607    else
1608        echo "none found"
1609    fi
1610    
1611  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1612      echo      echo
1613      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1614      echo "  file.  This file format is no longer supported.  For directions on"      echo "  file.  This file format is no longer supported.  For directions on"
1615      echo "  how to setup and use the new \"genmake2\" script, please see:"      echo "  how to setup and use the new \"genmake2\" script, please see:"
1616      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1617      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1618      echo "WARNING: ignore \"./.genmakerc\" and continue."      echo "WARNING: ignore \"./.genmakerc\" and continue."
1619      echo      echo
1620  fi  fi
1621    
1622  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
# Line 1383  if test "x${ROOTDIR}" = x ; then Line 1628  if test "x${ROOTDIR}" = x ; then
1628          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1629              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1630                  ROOTDIR=$d                  ROOTDIR=$d
1631                  printf "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1632                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1633                  break                  break
1634              fi              fi
1635          done          done
# Line 1402  if test ! -d ${ROOTDIR} ; then Line 1647  if test ! -d ${ROOTDIR} ; then
1647  fi  fi
1648    
1649  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1650  if test -f "${ROOTDIR}/doc/tag-index" ; then  version_file="${ROOTDIR}/doc/tag-index"
1651      THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`  if test -f $version_file ; then
1652        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1653    #-  remove ./BUILD_INFO.h file if older than version_file
1654        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1655            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1656            rm -f ./BUILD_INFO.h
1657        fi
1658  fi  fi
1659    
1660  if test "x$MAKEFILE" = x ; then  if test "x$MAKEFILE" = x ; then
1661      MAKEFILE="Makefile"      MAKEFILE="Makefile"
1662  fi  fi
1663    
1664  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:"
1665  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1666      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1667          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1668          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1669          find_possible_configs          find_possible_optfile
1670      else      else
1671          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1672      fi      fi
# Line 1430  if test "x$OPTFILE" != xNONE ; then Line 1681  if test "x$OPTFILE" != xNONE ; then
1681              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1682              exit 1              exit 1
1683          fi          fi
1684          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1685              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1686          fi          fi
1687      else      else
# Line 1439  if test "x$OPTFILE" != xNONE ; then Line 1690  if test "x$OPTFILE" != xNONE ; then
1690      fi      fi
1691  fi  fi
1692    
1693  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1694  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1695      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" != x ; then
1696            AD_OPTFILE=$MITGCM_AD_OF
1697        elif test "x$OPENAD" = x ; then
1698          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1699      else      else
1700          AD_OPTFILE=$MITGCM_AD_OF          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_oad
1701      fi      fi
1702  fi  fi
1703  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
# Line 1457  if test "x${AD_OPTFILE}" != xNONE ; then Line 1710  if test "x${AD_OPTFILE}" != xNONE ; then
1710              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1711              exit 1              exit 1
1712          fi          fi
1713          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1714              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1715          fi          fi
1716      else      else
# Line 1485  Error: no Fortran compiler: please speci Line 1738  Error: no Fortran compiler: please speci
1738  EOF  EOF
1739      exit 1      exit 1
1740  fi  fi
1741    if test "x$GET_FC_VERSION" != x ; then
1742      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1743      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1744      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1745      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1746      if test -s genmake_fc_vers1 ; then
1747        cat genmake_fc_vers1 >> $LOGFILE
1748      else
1749        cat genmake_fc_vers2 >> $LOGFILE
1750      fi
1751      echo "<-- compiler version ----" >> $LOGFILE
1752      rm -f genmake_fc_vers1 genmake_fc_vers2
1753    fi
1754    
1755  if test "x$CC" = x ; then  if test "x$CC" = x ; then
1756      CC=cc      look_for_C_compilers
 #     cat <<EOF 1>&2  
 # Error: no C compiler: please specify using one of the following:  
 #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"  
 #   2) the "-cc=XXX" command-line option  
 #   3) the "./genmake_local" file  
 # EOF  
 #     exit 1  
1757  fi  fi
1758    
1759  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1760      LINK=$FC      LINK=$FC
1761  fi  fi
# Line 1502  if test "x$MAKE" = x ; then Line 1763  if test "x$MAKE" = x ; then
1763      MAKE="make"      MAKE="make"
1764  fi  fi
1765  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1766      CPP=cpp      CPP="cpp -traditional -P"
1767  fi  fi
1768  #EH3 === UGLY ===  #EH3 === UGLY ===
1769  #  The following is an ugly little hack to check for $CPP in /lib/ and  #  The following is an ugly little hack to check for $CPP in /lib/ and
# Line 1529  EOF Line 1790  EOF
1790  else  else
1791      rm -f test_cpp      rm -f test_cpp
1792  fi  fi
1793    
1794  look_for_makedepend  look_for_makedepend
1795    
1796    #  Check that soft-link command is set and usable
1797  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1798      LN="ln -s"      LN="ln -s"
1799  fi  fi
# Line 1539  RETVAL=$? Line 1803  RETVAL=$?
1803  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1804      cat <<EOF 1>&2      cat <<EOF 1>&2
1805    
1806  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1807    command in the optfile.    command in the optfile.
1808    
1809  EOF  EOF
# Line 1557  check_for_broken_Ff Line 1821  check_for_broken_Ff
1821    
1822  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1823        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1824        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI"
1825    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1826    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1827    fi
1828    if test ! "x$OMP" = x ; then
1829          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1830          FFLAGS="$FFLAGS $OMPFLAG"
1831          F90FLAGS="$F90FLAGS $OMPFLAG"
1832          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1833    fi
1834    
1835    if test ! "x$USE_R4" = x ; then
1836          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1837          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1838  fi  fi
1839    
1840  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1841        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
1842        if test ! "x$FOOLAD" = x ; then        if test ! "x$FOOLAD" = x ; then
1843              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1844        else        else
1845              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1846        fi        fi
# Line 1599  if test ! "x$PAPI" = x ; then Line 1876  if test ! "x$PAPI" = x ; then
1876            echo "  Sticking with PAPI flop summary per timestep!"            echo "  Sticking with PAPI flop summary per timestep!"
1877        else        else
1878            echo "  Turning on performance analysis with PAPI"            echo "  Turning on performance analysis with PAPI"
1879            echo "  Please make sure PAPIINC, PAPILIB are defined"            echo "  Please make sure PAPIINC, PAPILIB are defined"
1880            DEFINES="$DEFINES -DUSE_PAPI"            DEFINES="$DEFINES -DUSE_PAPI"
1881            INCLUDES="$INCLUDES $PAPIINC"            INCLUDES="$INCLUDES $PAPIINC"
1882            LIBS="$LIBS $PAPILIB"            LIBS="$LIBS $PAPILIB"
# Line 1611  if test ! "x$PCL" = x ; then Line 1888  if test ! "x$PCL" = x ; then
1888            echo "  Sticking with PCL flop summary per timestep!"            echo "  Sticking with PCL flop summary per timestep!"
1889        else        else
1890            echo "  Turning on performance analysis with PCL"            echo "  Turning on performance analysis with PCL"
1891            echo "  Please make sure PCLINC, PCLLIB are defined"            echo "  Please make sure PCLINC, PCLLIB are defined"
1892            DEFINES="$DEFINES -DUSE_PCL"            DEFINES="$DEFINES -DUSE_PCL"
1893            INCLUDES="$INCLUDES $PCLINC"            INCLUDES="$INCLUDES $PCLINC"
1894            LIBS="$LIBS $PCLLIB"            LIBS="$LIBS $PCLLIB"
# Line 1621  if test ! "x$HPMT" = x ; then Line 1898  if test ! "x$HPMT" = x ; then
1898        if test ! "x$PAPI" = x ; then        if test ! "x$PAPI" = x ; then
1899            echo "  PAPI and the HPM Toolkit cannot co-exist!"            echo "  PAPI and the HPM Toolkit cannot co-exist!"
1900            echo "  Sticking with PAPI!"            echo "  Sticking with PAPI!"
1901        else if test ! "x$PCL" = x ; then        else
1902            if test ! "x$PCL" = x ; then
1903            echo "  PCL and the HPM Toolkit cannot co-exist!"            echo "  PCL and the HPM Toolkit cannot co-exist!"
1904            echo "  Sticking with PCL!"            echo "  Sticking with PCL!"
1905        else          else
1906            echo "  Turning on performance analysis with the HPM Toolkit"            echo "  Turning on performance analysis with the HPM Toolkit"
1907            echo "  Please make sure HPMTINC, HPMTLIB are defined"            echo "  Please make sure HPMTINC, HPMTLIB are defined"
1908            DEFINES="$DEFINES -DUSE_LIBHPM"            DEFINES="$DEFINES -DUSE_LIBHPM"
1909            INCLUDES="$INCLUDES $HPMTINC"            INCLUDES="$INCLUDES $HPMTINC"
1910            LIBS="$LIBS $HPMTLIB"            LIBS="$LIBS $HPMTLIB"
1911        fi          fi
1912        fi        fi
1913  fi  fi
1914  if test ! "x$GSL" = x ; then  if test ! "x$GSL" = x ; then
# Line 1640  if test ! "x$GSL" = x ; then Line 1918  if test ! "x$GSL" = x ; then
1918        INCLUDES="$INCLUDES $GSLINC"        INCLUDES="$INCLUDES $GSLINC"
1919        LIBS="$LIBS $GSLLIB"        LIBS="$LIBS $GSLLIB"
1920  fi  fi
1921    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1922    if test ! "x$USE_EXTENDED_SRC" = x ; then
1923          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1924          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1925    fi
1926    
1927  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1928  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
# Line 1681  else Line 1964  else
1964  fi  fi
1965  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1966    
1967  printf "  Do we have the etime() command using $FC...  "  printf "  Do we have the etime() command using $FC... "
1968  cat > genmake_tcomp.$FS <<EOF  cat > genmake_tcomp_1.$FS <<EOF
1969        program hello        program hello
1970        REAL*4 ACTUAL, TARRAY(2)        REAL*4 actual, tarray(2)
1971        EXTERNAL ETIME        EXTERNAL ETIME
1972        REAL*4 ETIME        REAL*4 ETIME
1973        actual = etime( tarray )        actual = ETIME( tarray )
1974        print *, tarray        print *, tarray
1975        end        end
1976  EOF  EOF
1977  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp_1 genmake_tcomp_1.$FS > genmake_tcomp.log 2>&1
1978  RETVAL=$?  RETVAL=$?
1979  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1980      HAVE_ETIME=t      HAVE_ETIME='Fct'
1981      DEFINES="$DEFINES -DHAVE_ETIME"      DEFINES="$DEFINES -DHAVE_ETIME_FCT"
1982      echo "yes"      echo " yes (${HAVE_ETIME})"
1983  else  else
1984      cat > genmake_tcomp_2.$FS <<EOF
1985          program hello
1986          REAL*4 actual, tarray(2)
1987          actual = -999.
1988          call ETIME( tarray, actual )
1989          if ( actual.ge.0. ) then
1990            print *, 0, tarray, actual
1991          else
1992            print *, 1, tarray, actual
1993          endif
1994          end
1995    EOF
1996      $FC $FFLAGS -o genmake_tcomp_2 genmake_tcomp_2.$FS >> genmake_tcomp.log 2>&1
1997      RETVAL=$?
1998      if test "x$RETVAL" = x0 ; then
1999        echo -n 'c,'
2000        ./genmake_tcomp_2 > genmake_tcomp_2.out 2>&1
2001        RETVAL=$?
2002      fi
2003      if test "x$RETVAL" = x0 ; then
2004        echo -n 'r:'
2005        RETVAL=`cat genmake_tcomp_2.out | $AWK '{print $1}'`
2006      fi
2007      if test "x$RETVAL" = x0 ; then
2008        HAVE_ETIME='SbR'
2009        DEFINES="$DEFINES -DHAVE_ETIME_SBR"
2010        echo " yes (${HAVE_ETIME})"
2011      else
2012      HAVE_ETIME=      HAVE_ETIME=
2013      echo "no"      echo " no"
2014      fi
2015  fi  fi
2016    #mkdir chk_etime ; cp -p -f genmake_tcomp* chk_etime
2017  rm -f genmake_tcomp*  rm -f genmake_tcomp*
2018    
2019  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
2020  check_HAVE_CLOC  check_HAVE_CLOC
2021  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
2022        DEFINES="$DEFINES -DHAVE_CLOC"
2023      echo "yes"      echo "yes"
2024  else  else
2025      echo "no"      echo "no"
# Line 1720  rm -f genmake_t* Line 2034  rm -f genmake_t*
2034  printf "  Can we unlimit the stack size using $FC...  "  printf "  Can we unlimit the stack size using $FC...  "
2035  check_HAVE_SETRLSTK  check_HAVE_SETRLSTK
2036  if test "x$HAVE_SETRLSTK" = xt ; then  if test "x$HAVE_SETRLSTK" = xt ; then
2037        DEFINES="$DEFINES -DHAVE_SETRLSTK"
2038      echo "yes"      echo "yes"
2039  else  else
2040      echo "no"      echo "no"
# Line 1729  rm -f genmake_t* Line 2044  rm -f genmake_t*
2044  printf "  Can we register a signal handler using $FC...  "  printf "  Can we register a signal handler using $FC...  "
2045  check_HAVE_SIGREG  check_HAVE_SIGREG
2046  if test "x$HAVE_SIGREG" = xt ; then  if test "x$HAVE_SIGREG" = xt ; then
2047        DEFINES="$DEFINES -DHAVE_SIGREG"
2048      echo "yes"      echo "yes"
2049  else  else
2050      echo "no"      echo "no"
# Line 1738  rm -f genmake_t* Line 2054  rm -f genmake_t*
2054  printf "  Can we use stat() through C calls...  "  printf "  Can we use stat() through C calls...  "
2055  check_HAVE_STAT  check_HAVE_STAT
2056  if test "x$HAVE_STAT" != x ; then  if test "x$HAVE_STAT" != x ; then
2057        DEFINES="$DEFINES -DHAVE_STAT"
2058      echo "yes"      echo "yes"
2059  else  else
2060      echo "no"      echo "no"
# Line 1747  rm -f genmake_t* Line 2064  rm -f genmake_t*
2064  printf "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
2065  check_netcdf_libs  check_netcdf_libs
2066  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
2067        DEFINES="$DEFINES -DHAVE_NETCDF"
2068        echo "yes"
2069    else
2070        echo "no"
2071    fi
2072    
2073    printf "  Can we create LAPACK-enabled binaries...  "
2074    check_lapack_libs
2075    if test "x$HAVE_LAPACK" != x ; then
2076        DEFINES="$DEFINES -DHAVE_LAPACK"
2077        echo "yes"
2078    else
2079        echo "no"
2080    fi
2081    
2082    printf "  Can we call FLUSH intrinsic subroutine...  "
2083    check_HAVE_FLUSH
2084    if test "x$HAVE_FLUSH" = xt ; then
2085        DEFINES="$DEFINES -DHAVE_FLUSH"
2086      echo "yes"      echo "yes"
2087  else  else
2088      echo "no"      echo "no"
2089  fi  fi
 DEFINES="$DEFINES $IGNORE_TIME"  
2090    
2091    DEFINES="$DEFINES $IGNORE_TIME"
2092  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
2093      build_embed_encode      build_embed_encode
2094  fi  fi
2095  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
2096      ENABLE="$ENABLE embed_files"      ENABLE="$ENABLE embed_files"
2097    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
2098  fi  fi
2099    
   
2100  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
2101  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
2102  for d in $MODS ; do  for d in $MODS ; do
2103      if test ! -d $d ; then      if test ! -d $d ; then
2104          echo          echo
2105          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
2106          exit 1          exit 1
2107      else      else
2108          printf " $d"          printf "$d "
2109          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
2110          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
2111      fi      fi
2112  done  done
2113  echo  echo
2114    
2115  if test "x${PLATFORM}" = x ; then  #if test "x${PLATFORM}" = x ; then
2116      PLATFORM=$p_PLATFORM  #    PLATFORM=$p_PLATFORM
2117  fi  #fi
2118    
2119  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
2120      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
# Line 1818  ERROR: neither of the two default script Line 2154  ERROR: neither of the two default script
2154      ${TOOLSDIR}/set64bitConst.sh      ${TOOLSDIR}/set64bitConst.sh
2155      ${TOOLSDIR}/set64bitConst.csh      ${TOOLSDIR}/set64bitConst.csh
2156    
2157    are working so please check paths or specify (with \$S64) a    are working so please check paths or specify (with \$S64) a
2158    working version of this script.    working version of this script.
2159    
2160  EOF  EOF
# Line 1830  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD Line 2166  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD
2166    
2167  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2168    
2169    #  Set Standard Code Directories:
2170    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2171        STANDARDDIRS="eesupp model"
2172    fi
2173    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2174    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2175    ckM=$?
2176    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2177    ckE=$?
2178    if test $ckM = 0 -a $ckE = 1 ; then
2179        STANDARDDIRS="$STANDARDDIRS eesupp"
2180    fi
2181    
2182  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2183  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2184  #  they appear as regular source code  #  they appear as regular source code
2185  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2186      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2187      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2188        ) > make_eesupp.errors 2>&1
2189      RETVAL=$?      RETVAL=$?
2190      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2191          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 1850  fi Line 2200  fi
2200  for pdir in exch2 regrid ; do  for pdir in exch2 regrid ; do
2201      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2202          echo "  Making source files in pkg/${pdir} from templates"          echo "  Making source files in pkg/${pdir} from templates"
2203          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2204            ) > make_${pdir}.errors 2>&1
2205          RETVAL=$?          RETVAL=$?
2206          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
2207              rm -f make_${pdir}.errors              rm -f make_${pdir}.errors
# Line 1863  for pdir in exch2 regrid ; do Line 2214  for pdir in exch2 regrid ; do
2214  done  done
2215    
2216  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2217  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2218      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2219      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2220          PDEPEND=$tmp  fi
2221      else  if  test "x${PKG_DEPEND}" = x ; then
2222          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2223          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2224  else  else
2225      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2226          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2227          exit 1          exit 1
2228      fi      fi
2229        echo "  getting package dependency info from  $PKG_DEPEND"
2230    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2231        get_pdepend_list $PKG_DEPEND
2232  fi  fi
2233  echo "  getting package dependency info from  $PDEPEND"  
2234  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2235  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2236  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2237      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2238      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2239  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2240  if test ! "x${RETVAL}" = x0 ; then  fi
2241      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2242      exit 1          echo "Warning:  No package groups information was specified."
2243            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2244    else
2245        if test ! -r ${PKG_GROUPS} ; then
2246            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2247            exit 1
2248        fi
2249        echo "  getting package groups info from      $PKG_GROUPS"
2250  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
2251    
2252  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2253  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2254  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2255  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2256      for i in "." $MODS ; do      for i in "." $MODS ; do
2257          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2258                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2259                  break                  break
2260          fi          fi
2261      done      done
2262  fi  fi
2263  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2264      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2265  fi      if test "x${PKG_GROUPS}" = x ; then
2266  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2267      echo "    default packages file disabled"          exit 1
2268        fi
2269  else  else
2270      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2271          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2272            exit 1
2273      else      else
2274          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2275          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2276          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2277          RETVAL=$?          RETVAL=$?
2278          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2279              printf "Error: can't parse default package list "              printf "Error: can't parse package list "
2280              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2281              exit 1              exit 1
2282          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         RET=1  
         while test $RET = 1 ; do expand_pkg_groups; RET=$?; done  
         echo "    after group expansion packages are:  $PACKAGES"  
2283      fi      fi
2284  fi  fi
2285    for i in $pkg_list ; do
2286        PACKAGES="$PACKAGES $i"
2287    done
2288    echo     "    before group expansion packages are:$PACKAGES"
2289    if test "x${PKG_GROUPS}" != x ; then
2290        RET=1
2291        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2292        echo "    after group expansion packages are: $PACKAGES"
2293    fi
2294    
2295  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2296    echo "" > $TMP.pack
2297  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2298      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2299  done  done
2300  for i in `grep  "-" ./.tmp_pack` ; do  for i in `grep  "-" $TMP.pack` ; do
2301      j=`echo $i | sed 's/[-]//'`      j=`echo $i | sed 's/[-]//'`
2302      DISABLE="$DISABLE $j"      DISABLE="$DISABLE $j"
2303  done  done
# Line 1953  for p in $PACKAGES ; do Line 2315  for p in $PACKAGES ; do
2315  done  done
2316  PACKAGES="$pack"  PACKAGES="$pack"
2317  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2318  echo "" > ./.tmp_pack  echo "" > $TMP.pack
2319  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2320  # Test if each explicitly referenced package exists  # Test if each explicitly referenced package exists
2321  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2322      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2323      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2324          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2325          exit 1          exit 1
2326      fi      fi
2327      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2328  done  done
2329  PACKAGES=  PACKAGES=
2330  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do  for i in `grep -v "-" $TMP.pack | sort | uniq` ; do
2331      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2332  done  done
2333  rm -f ./.tmp_pack  rm -f $TMP.pack
2334  echo "    packages are:  $PACKAGES"  echo "    packages are: $PACKAGES"
2335    
2336  #  Check for package MNC: if NetCDF is available, then build the MNC  #  Check for package MNC: if NetCDF is available, then build the MNC
2337  #  template files ; otherwise, delete mnc from the list of packages.  #  template files ; otherwise, delete mnc from the list of packages.
2338  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2339  RETVAL=$?  mnc_in=$?
2340  if test "x$RETVAL" = x0 ; then  if test "x$HAVE_NETCDF" != xt ; then
2341      if test "x$HAVE_NETCDF" != xt ; then      if test "x$mnc_in" = x0 ; then
2342          cat <<EOF          cat <<EOF
   
2343  *********************************************************************  *********************************************************************
2344  WARNING: the "mnc" package was enabled but tests failed to compile  WARNING: the "mnc" package was enabled but tests failed to compile
2345    NetCDF applications.  Please check that:    NetCDF applications.  Please check that:
2346    
2347    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2348    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2349         NetCDF library to link against.         NetCDF library to link against.
2350    
2351    Due to this failure, the "mnc" package is now DISABLED.    Due to this failure, the "mnc" package is now DISABLED.
2352  *********************************************************************  *********************************************************************
   
2353  EOF  EOF
2354          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2355          DISABLE="$DISABLE mnc"          DISABLE="$DISABLE mnc"
2356      else      else
2357          ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1      #  this prevent to add mnc (due to pdepend rules) if not available
2358          RETVAL=$?          DISABLE="$DISABLE mnc"
2359          if test "x${RETVAL}" = x0 ; then      fi
2360              rm -f make_mnc.errors  else
2361          else      # we have NetCDF, we try to build MNC template files
2362              echo "Error: problem encountered while building source files in pkg/mnc:"      ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2363              cat make_mnc.errors 1>&2      RETVAL=$?
2364        if test "x${RETVAL}" = x0 ; then
2365            rm -f make_mnc.errors
2366        else
2367            echo "Error: problem encountered while building source files in pkg/mnc:"
2368            cat make_mnc.errors 1>&2
2369            if test "x$mnc_in" = x0 ; then
2370              exit 1              exit 1
2371            else
2372                DISABLE="$DISABLE mnc"
2373          fi          fi
2374      fi      fi
2375  fi  fi
2376    
2377  #  Check for package PROFILES: if NetCDF is not available,  #  Check for package PROFILES: if NetCDF is not available,
2378  #  then delete profiles from the list of available packages.  #  then delete profiles from the list of available packages.
2379  echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1  if test "x$HAVE_NETCDF" != xt ; then
2380  RETVAL=$?      echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2381  if test "x$RETVAL" = x0 ; then      RETVAL=$?
2382      if test "x$HAVE_NETCDF" != xt ; then      if test "x$RETVAL" = x0 ; then
2383          cat <<EOF          cat <<EOF
   
2384  *********************************************************************  *********************************************************************
2385  WARNING: the "profiles" package was enabled but tests failed to  WARNING: the "profiles" package was enabled but tests failed to
2386    compile NetCDF applications.  Please check that:    compile NetCDF applications.  Please check that:
2387    
2388    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2389    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2390         NetCDF library to link against.         NetCDF library to link against.
2391    
2392    Due to this failure, the "profiles" package is now DISABLED.    Due to this failure, the "profiles" package is now DISABLED.
2393  *********************************************************************  *********************************************************************
   
2394  EOF  EOF
2395          PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2396          DISABLE="$DISABLE profiles"          DISABLE="$DISABLE profiles"
2397        else
2398        #  this prevent to add profiles (due to pdepend rules) if not available
2399            DISABLE="$DISABLE profiles"
2400        fi
2401    fi
2402    
2403    #  Make sure the openad package is enabled if using OpenAD
2404    if test "x$OPENAD" != x ; then
2405        echo " $PACKAGES " | grep ' openad ' > /dev/null 2>&1
2406        RETVAL=$?
2407        if test "x$RETVAL" != x0 ; then
2408            cat <<EOF
2409    
2410    *********************************************************************
2411    ERROR: when generating an adjoint with OpenAD, the openad package
2412      must be enabled.  Please add it to packages.conf.
2413    *********************************************************************
2414    
2415    EOF
2416            exit 1
2417      fi      fi
2418  fi  fi
2419    
2420  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2421  ck=    echo "  applying package dependency rules"
2422  while test "x$ck" != xtt ; do    ck=
2423      while test "x$ck" != xtt ; do
2424      i=0      i=0
2425      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2426      rtot=$nname      rtot=$nname
# Line 2049  while test "x$ck" != xtt ; do Line 2436  while test "x$ck" != xtt ; do
2436                  pin="t"                  pin="t"
2437              fi              fi
2438          done          done
2439            #  or in the current $STANDARDDIRS list?
2440            for p in $STANDARDDIRS ; do
2441                if test "x$p" = "x$pname" ; then pin="t" ; fi
2442            done
2443    
2444          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2445          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 2071  while test "x$ck" != xtt ; do Line 2462  while test "x$ck" != xtt ; do
2462    
2463          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2464          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2465              #echo "   " $pname ": need to add :" $dname              #echo "   " $pname ": need to add :" $dname
2466              in_dis="f"              in_dis="f"
2467              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2468                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 2092  while test "x$ck" != xtt ; do Line 2483  while test "x$ck" != xtt ; do
2483          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2484          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2485              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2486              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2487              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2488              exit 1              exit 1
2489          fi          fi
2490          i=`echo "$i + 1" | bc -l`          i=`echo "$i + 1" | bc -l`
2491          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2492      done      done
2493      ck=$ck"t"      ck=$ck"t"
2494  done    done
2495  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2496    fi
2497  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2498      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2499      if test -d $adr ; then      if test -d $adr ; then
# Line 2118  done Line 2510  done
2510    
2511  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2512  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2513  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2514  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2515  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2516  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2517  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 2136  for n in $names ; do Line 2528  for n in $names ; do
2528          done          done
2529          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2530              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2531              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2532          fi          fi
2533      fi      fi
2534  done  done
# Line 2147  for i in $PACKAGES ; do Line 2539  for i in $PACKAGES ; do
2539  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2540    
2541  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2542      case $i in      case $i in
2543          aim_v23)          aim_v23)
2544              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2545              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
2546              ;;              ;;
2547      esac      esac
# Line 2157  for i in $PACKAGES ; do Line 2549  for i in $PACKAGES ; do
2549    
2550  done  done
2551    
2552  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2553  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2554  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2555      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2556          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 2194  for i in $spaths ; do Line 2583  for i in $spaths ; do
2583      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2584          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2585          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2586          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2587          for n in $names ; do          for n in $names ; do
2588              test_for_package_in_cpp_options $CPP_OPTIONS $n              test_for_package_in_cpp_options $CPP_OPTIONS $n
2589          done          done
2590      fi      fi
2591      try="$i/CPP_EEOPTIONS.h"      try="$i/CPP_EEOPTIONS.h"
2592      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2593          echo "    found CPP_EEOPTIONS=\"$try\""          echo "    found CPP_EEOPTIONS=\"$try\""
2594          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2595  #**** not yet enabled ****  #**** not yet enabled ****
2596  #        test_for_mpi_in_cpp_eeoptions $try  #        test_for_mpi_in_cpp_eeoptions $try
2597  #**** not yet enabled ****  #**** not yet enabled ****
# Line 2216  fi Line 2605  fi
2605    
2606  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2607  #  compiler.  #  compiler.
2608  if test -f ./ad_files ; then  if test -f $TMP.adSrcFiles ; then
2609      rm -f ./ad_files      rm -f $TMP.adSrcFiles
2610  fi  fi
2611  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2612    touch $TMP.adSrcFiles
2613  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2614      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2615      for j in $list_files ; do      for j in $list_files ; do
2616          cat $i/$j >> ad_files          cat $i/$j >> $TMP.adSrcFiles
2617      done      done
2618  done  done
2619  if test ! "x"$FS = "x.f" ; then  if test ! "x"$FS = "x.f" ; then
2620      cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f      cat $TMP.adSrcFiles | sed -e "s/\.f/.$FS/g" > $TMP.adSrcFiles_f
2621      mv -f ad_files_f ad_files      mv -f $TMP.adSrcFiles_f $TMP.adSrcFiles
2622  fi  fi
2623    
2624  echo  echo
# Line 2240  for i in $INCLUDEDIRS ; do Line 2630  for i in $INCLUDEDIRS ; do
2630      fi      fi
2631  done  done
2632    
2633  if test ! "x$DIVA" = x ; then  if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2634      echo "  Creating the pseudo-MPI include directory"      if test ! "x$MPIINCLUDEDIR" = x ; then
2635      INCLUDES="-I./mpi_headers $INCLUDES"          #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2636      rm -rf ./mpi_headers          #   checking for additional included headers (in case of chain of included
2637      mkdir -p ./mpi_headers          #   header); also set LOCAL_MPI_HEADERS (if not already set)
2638            mpi_headers_do_local_copy
     if test "x$MPIINCLUDEDIR" = x ; then  
         if test "x$MPIHOME" = x ; then  
             MPIHOME='/usr'  
         fi  
         MPIINCLUDEDIR='$MPIHOME/include'  
     fi  
       
     if test -r $MPIINCLUDEDIR/mpif.h ; then  
         for i in $MPI_HEADER_FILES; do  
             cp -p $MPIINCLUDEDIR/$i ./mpi_headers  
         done  
   
         perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h  
     else  
         echo " We cannot create a copy of mpif.h!"  
 #       exit -1  
2639      fi      fi
2640  fi  fi
2641    
2642  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2643  rm -rf .links.tmp  rm -rf $TMP.links
2644  mkdir .links.tmp  mkdir $TMP.links
2645  touch .links.tmp/foo  touch $TMP.links/foo
2646  if test ! -r ".links.tmp/foo" ; then  if test ! -r "$TMP.links/foo" ; then
2647      echo      echo
2648      echo "ERROR : something is wrong with your directory permissions or"      echo "ERROR : something is wrong with your directory permissions or"
2649      echo "   your user file-creation mask (\"umask\") since creating a"      echo "   your user file-creation mask (\"umask\") since creating a"
# Line 2285  if test ! -r ".links.tmp/foo" ; then Line 2659  if test ! -r ".links.tmp/foo" ; then
2659      echo      echo
2660      exit 1      exit 1
2661  fi  fi
2662  rm -f .links.tmp/foo  rm -f $TMP.links/foo
2663  echo "# This section creates symbolic links" > srclinks.tmp  
2664  echo "" >> srclinks.tmp  if test "x$OPENAD" != x ; then
2665  printf 'SRCFILES = '    > srclist.inc      OAD_DONT_COMPILE="/dev/null"
2666  printf 'CSRCFILES = '   > csrclist.inc      OAD_DONT_TRANSFORM="/dev/null"
2667  printf 'F90SRCFILES = ' > f90srclist.inc      OAD_KEEP_ORIGINAL="/dev/null"
2668  printf 'HEADERFILES = ' > hlist.inc      OAD_CB2M_FILES="/dev/null"
2669  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc      OADTOOLS="$TOOLSDIR/OAD_support"
2670        echo "  looking for dontCompile file:  "
2671        for i in "." $MODS $OADTOOLS ; do
2672            if test -r $i"/dontCompile" ; then
2673                OAD_DONT_COMPILE=$i"/dontCompile"
2674                echo "     found $OAD_DONT_COMPILE"
2675                break
2676            fi
2677        done
2678        echo "  looking for dontTransform file:  "
2679        for i in "." $MODS $OADTOOLS ; do
2680            if test -r $i"/dontTransform" ; then
2681                OAD_DONT_TRANSFORM=$i"/dontTransform"
2682                echo "     found $OAD_DONT_TRANSFORM"
2683                break
2684            fi
2685        done
2686        echo "  looking for keepOriginal file:  "
2687        for i in "." $MODS $OADTOOLS ; do
2688            if test -r $i"/keepOriginal" ; then
2689                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2690                echo "     found $OAD_KEEP_ORIGINAL"
2691                break
2692            fi
2693        done
2694        echo "  looking for cb2mFiles:  "
2695        for i in "." $MODS $OADTOOLS ; do
2696            if test -r $i"/cb2mFiles" ; then
2697                OAD_CB2M_FILES=$i"/cb2mFiles"
2698                echo "     found $OAD_CB2M_FILES"
2699                break
2700            fi
2701        done
2702        echo "   OpenAD exceptions:  "
2703    fi
2704    
2705    echo "# This section creates symbolic links" > $TMP.srclinks
2706    echo "" >> $TMP.srclinks
2707    printf 'F77_SRC_FILES = ' > $TMP.F77srclist
2708    printf 'NON_AD_F77_SRC_FILES = ' > $TMP.nonADF77srclist
2709    printf 'C_SRC_FILES = '   > $TMP.csrclist
2710    printf 'F90_SRC_FILES = ' > $TMP.F90srclist
2711    printf 'H_SRC_FILES = '   > $TMP.hsrclist
2712    printf 'AD_FLOW_FILES = ' > $TMP.ad_flow_files
2713  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2714  for d in $alldirs ; do  for d in $alldirs ; do
2715      deplist=      deplist=
2716      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2717      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2718        if test "x$OPENAD" != x ; then
2719            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2720        fi
2721      for sf in $sfiles ; do      for sf in $sfiles ; do
2722          if test ! -r ".links.tmp/$sf" ; then          if test ! -r "$TMP.links/$sf" ; then
2723              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2724                  ignore_f=f                  ignore_f=f
2725                  case $d/$sf in                  case $d/$sf in
2726                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2727                          ignore_f=t                          ignore_f=t
2728                          ;;                          ;;
2729                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2730                          ignore_f=t                          ignore_f=t
2731                          ;;                          ;;
2732                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2733                          ignore_f=t                          ignore_f=t
2734                          ;;                          ;;
2735                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2736                          ignore_f=t                          ignore_f=t
2737                          ;;                          ;;
2738                    ./EMBEDDED_FILES.h)                    ./EMBEDDED_FILES.h)
2739                          ignore_f=t                          ignore_f=t
2740                          ;;                          ;;
2741                    *)                    *)
2742                          #  For the local directory *ONLY*,                          #  For the local directory *ONLY*,
2743                          #  ignore all soft-links                          #  ignore all soft-links
2744                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2745                              ignore_f=t                              ignore_f=t
2746                          else                          else
2747                              touch .links.tmp/$sf                              touch $TMP.links/$sf
2748                              deplist="$deplist $sf"                              deplist="$deplist $sf"
2749                          fi                          fi
2750                          ;;                          ;;
2751                  esac                  esac
2752                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2753                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2754                      case $extn in                      case $extn in
2755                          F)                        F)
2756                              echo    " \\"  >> srclist.inc                          echo    " \\"  >> $TMP.F77srclist
2757                              printf " $sf" >> srclist.inc                          printf " $sf" >> $TMP.F77srclist
2758                              ;;                          if test "x$OPENAD" = x ; then
2759                          F90)                              basename=${sf%%.F}
2760                              echo    " \\"  >> f90srclist.inc                              isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2761                              printf " $sf" >> f90srclist.inc                              if test -z "$isAD" ; then
2762                              ;;                                  echo    " \\"  >> $TMP.nonADF77srclist
2763                          c)                                  printf " $sf" >> $TMP.nonADF77srclist
2764                              echo    " \\"  >> csrclist.inc                              fi
2765                              printf " $sf" >> csrclist.inc                          else #- OpenAD case:
2766                              ;;                              basename=${sf%%.F}
2767                          h)                              isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2768                              echo    " \\"  >> hlist.inc                              if test -z "$isAD" ; then
2769                              printf " $sf" >> hlist.inc                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2770                              ;;                                  if test -z "$toBeIgnored" ; then
2771                          flow)                                      echo    " \\"  >> $TMP.nonADF77srclist
2772                              echo    " \\"  >> ad_flow_files.inc                                      printf " $sf" >> $TMP.nonADF77srclist
2773                              printf " $sf" >> ad_flow_files.inc                                  else
2774                              ;;                                      echo "    not to be compiled   :  $sf"
2775                      esac                                  fi
2776                  fi                              else # file is initially listed as an AD file we want to exclude it
2777                                     # or we want to retain the untransformed version
2778                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2779                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2780                                    if test -n "$notToBeTransformed"; then
2781                                        echo "    not to be transformed:  $sf"
2782                                    fi
2783                                    if test -n "$untransformedVersionToBeKept" ; then
2784                                        echo "    original to be kept  :  $sf"
2785                                    fi
2786                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2787                                        echo    " \\"  >> $TMP.nonADF77srclist
2788                                        printf " $sf" >> $TMP.nonADF77srclist
2789                                    fi
2790                                fi
2791                            fi
2792                            ;;
2793                        F90)
2794                            echo    " \\"  >> $TMP.F90srclist
2795                            printf " $sf" >> $TMP.F90srclist
2796                            ;;
2797                        c)
2798                            echo    " \\"  >> $TMP.csrclist
2799                            printf " $sf" >> $TMP.csrclist
2800                            ;;
2801                        h)
2802                            echo    " \\"  >> $TMP.hsrclist
2803                            printf " $sf" >> $TMP.hsrclist
2804                            ;;
2805                        flow)
2806                            echo    " \\"  >> $TMP.ad_flow_files
2807                            printf " $sf" >> $TMP.ad_flow_files
2808                            ;;
2809                       esac
2810                    fi
2811              fi              fi
2812          fi          fi
2813      done      done
2814      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2815          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2816          echo "#  These files are linked from $d" >> srclinks.tmp          echo "" >> $TMP.srclinks
2817          echo "$deplist :" >> srclinks.tmp          echo "#  These files are linked from $d" >> $TMP.srclinks
2818            echo "$deplist :" >> $TMP.srclinks
2819  # We need to make sure that the link isn't already there.  # We need to make sure that the link isn't already there.
2820  # This may happen when make thinks that a header file has to be "remade"  # This may happen when make thinks that a header file has to be "remade"
2821  # because a module it depends on has changed.  In this case we do nothing.  # because a module it depends on has changed.  In this case we do nothing.
2822          printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp          printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> $TMP.srclinks
2823          fi
2824      fi      fi
2825  done  done
2826  rm -rf .links.tmp  rm -rf $TMP.links
2827  echo "" >> srclist.inc  echo "" >> $TMP.F77srclist
2828  echo "" >> csrclist.inc  echo "" >> $TMP.nonADF77srclist
2829  echo "" >> f90srclist.inc  echo "" >> $TMP.csrclist
2830  echo "" >> hlist.inc  echo "" >> $TMP.F90srclist
2831  echo "" >> ad_flow_files.inc  echo "" >> $TMP.hsrclist
2832    echo "" >> $TMP.ad_flow_files
2833    
2834    CMDLINE=$0
2835    for xx in "$@" ; do nw=`echo $xx | wc -w`
2836        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2837                            else CMDLINE="$CMDLINE '$xx'" ; fi
2838    done
2839    
2840  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2841      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2842  fi  fi
2843  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2844  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 2383  echo "#    $MACHINE" >> $MAKEFILE Line 2846  echo "#    $MACHINE" >> $MAKEFILE
2846  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2847  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2848  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2849  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2850  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2851  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2852    
# Line 2394  EXE_SVD=$EXECUTABLE"_svd" Line 2857  EXE_SVD=$EXECUTABLE"_svd"
2857  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2858  #  #
2859  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2860  #  #
2861  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2862  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2863  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 2405  cat >>$MAKEFILE <<EOF Line 2868  cat >>$MAKEFILE <<EOF
2868  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2869  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2870  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2871  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2872  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2873  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 2414  cat >>$MAKEFILE <<EOF Line 2875  cat >>$MAKEFILE <<EOF
2875  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2876    
2877  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2878  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2879  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2880  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2881  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2882  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2883  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2884    OADTOOLS    = ${OADTOOLS}
2885    
2886  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2887  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 2440  else Line 2902  else
2902      echo "EMBEDDED_FILES = " >>$MAKEFILE      echo "EMBEDDED_FILES = " >>$MAKEFILE
2903  fi  fi
2904    
2905  #  Note: figure out some way to add Hyades JAM libraries here  # extract default cpp search path so we can pass it to makedepend
2906    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2907    
2908  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2909  # Unix ln (link)  # Unix ln (link)
2910  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2911  # Dependency generator  # Dependency generator
2912  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2913  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 2463  LINK = ${LINK} ${LDADD} Line 2925  LINK = ${LINK} ${LDADD}
2925  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2926  # Includes for CPP  # Includes for CPP
2927  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2928    # default CPP includes for makedepend
2929    CPPINCLUDES = ${CPPINCLUDES}
2930  # Flags for KPP  # Flags for KPP
2931  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2932  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2933  # Optim./debug for FC  # Optim./debug for FC
2934  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}  FFLAGS = ${FFLAGS}
2935  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM} ${FEXTRAFLAGS}
2936  # Optim./debug for FC  # Optim./debug for FC
2937  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2938  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2939    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2940  # Flags for CC  # Flags for CC
2941  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2942  # Files that should not be optimized  # Files that should not be optimized
# Line 2479  NOOPTFILES = ${NOOPTFILES} Line 2944  NOOPTFILES = ${NOOPTFILES}
2944  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2945  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2946  LIBS = ${LIBS}  LIBS = ${LIBS}
2947  # Name of the Mekfile  # Name of the makefile
2948  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2949    # Name of the make program
2950    MAKE = ${MAKE}
2951    
2952  EOF  EOF
2953    
2954  cat srclist.inc       >> $MAKEFILE  cat $TMP.F77srclist      >> $MAKEFILE
2955  cat csrclist.inc      >> $MAKEFILE  cat $TMP.nonADF77srclist >> $MAKEFILE
2956  cat f90srclist.inc    >> $MAKEFILE  cat $TMP.csrclist        >> $MAKEFILE
2957  cat hlist.inc         >> $MAKEFILE  cat $TMP.F90srclist      >> $MAKEFILE
2958  cat ad_flow_files.inc >> $MAKEFILE  cat $TMP.hsrclist        >> $MAKEFILE
2959    cat $TMP.ad_flow_files   >> $MAKEFILE
2960    
2961    rm -f $TMP.F77srclist $TMP.nonADF77srclist $TMP.csrclist $TMP.F90srclist $TMP.hsrclist $TMP.ad_flow_files
2962    
2963  echo >> $MAKEFILE  echo >> $MAKEFILE
2964  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  
2965  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE  # add definitions for preprocessed sources
2966  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  # and note that not all systems allow case sensitive extensions
2967  echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE  # hence the $FS and $FS90 here.
2968    # for fixed format f90 files we use ff90 or FF90 resp
2969    # but these are not expected to be the original source files
2970    
2971    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2972    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2973    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2974    echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2975  echo >> $MAKEFILE  echo >> $MAKEFILE
2976  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2977  echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90 .flowdir .flow' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
 rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
 rm -f ad_flow_files.inc  
2978    
2979  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2980    
2981  all: \$(EXECUTABLE)  all: fwd_exe_target
2982  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES)  fwd_exe_target:
2983            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2984            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2985            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2986            @-rm -f ad_config.template
2987            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2988    
2989    \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2990          @echo Creating \$@ ...          @echo Creating \$@ ...
2991          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2992    
2993  depend:  depend:
2994          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2995          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2996          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2997          -rm -f makedepend.out          -rm -f makedepend.out
2998    
# Line 2518  libmitgcmuv.a: \$(OBJFILES) Line 3002  libmitgcmuv.a: \$(OBJFILES)
3002          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
3003          ar d   libmitgcmuv.a main.o          ar d   libmitgcmuv.a main.o
3004    
3005  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  obj: \$(OBJFILES)
3006    
3007  small_f: \$(F77FILES) \$(F90FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
3008    
3009  output.txt: \$(EXECUTABLE)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
         @printf 'running ... '  
         @\$(EXECUTABLE) > \$@  
3010    
3011    # remove most of the files that "make" generates
3012  clean:  clean:
3013          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
3014          -rm -rf *.o          -rm -rf *.o
3015          -rm -rf *.$FS *.flowdir          -rm -rf *.$FS *.flowdir
3016            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
3017    
3018    # remove most of the files that "make" and "make depend" generate
3019  Clean:  Clean:
3020          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
3021          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
3022          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
3023          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log f90mkdepend.log *.bak          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
3024          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log  
3025    # remove also the executable, files that "genmake2" generates (except Makefile)
3026    #         and output from a run (plus log files from testreport)
3027  CLEAN:  CLEAN:
3028          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
3029            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
3030            -rm -f $LOGFILE genmake_state genmake_*optfile
3031            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
3032            -rm -rf mpi_headers mnc_test_*
3033          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
3034          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
3035          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
3036          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime          -rm -f *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
3037            -rm -f datetime costfinal divided.ctrl snapshot* output_adm.txt.diva_*
3038          -rm -f *_MIT_CE_000.opt0000 costfunction*0000          -rm -f *_MIT_CE_000.opt0000 costfunction*0000
3039          -rm -rf mnc_test_*          -rm -f oad_cp.[0-9][0-9][0-9].?????
3040    
 #eh3 Makefile: makefile  
3041  makefile:  makefile:
3042          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
3043  cleanlinks:  cleanlinks:
3044          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
3045    
3046  # Special targets (SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
3047  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
3048          @echo Creating \$@ ...          @echo Creating \$@ ...
3049          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
3050  AD_CONFIG.h:  AD_CONFIG.h:
3051          @echo Creating \$@ ...          @echo Creating \$@ ...
3052          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
3053  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
3054          @echo Creating \$@ ...          @echo Creating \$@ ...
3055          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
# Line 2576  if test "x$EMBED_SRC" = xt ; then Line 3068  if test "x$EMBED_SRC" = xt ; then
3068    
3069  decode_files.o : EMBEDDED_FILES.h  decode_files.o : EMBEDDED_FILES.h
3070    
3071  ##  \$(F77FILES)  ##  \$(F77_PP_SRC_FILES)
3072  all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile  all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3073          @echo Creating \$@ ...          @echo Creating \$@ ...
3074          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3075          -rm -f all_fF.tar.gz          -rm -f all_fF.tar.gz
3076          -gzip all_fF.tar          -gzip all_fF.tar
3077    
# Line 2597  cat >>$MAKEFILE <<EOF Line 3089  cat >>$MAKEFILE <<EOF
3089  ## This nullifies any default implicit rules concerning these two file types:  ## This nullifies any default implicit rules concerning these two file types:
3090  ## %.o : %.F  ## %.o : %.F
3091    
3092    # C preprocessing and replacing the _d in constants:
3093    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3094    
3095  .F.$FS:  .F.$FS:
3096          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3097  .$FS.o:  .$FS.o:
3098          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3099  .F.o:  .F.o:
3100          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3101  .F90.o:    .F90.$FS90:
3102            \$(CPPCMD)  > \$@
3103    .FF90.f$FS90:
3104            \$(CPPCMD)  > \$@
3105    .$FS90.o:
3106          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3107    .f$FS90.o:
3108            cp \$< \$(basename  \$<).f90
3109            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
3110  .c.o:  .c.o:
3111          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3112  .flow.flowdir:  .flow.flowdir:
3113          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3114    
3115  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3116  .F.p:  .F.p:
3117          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3118  .p.$FS:  .p.$FS:
3119          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3120    
3121    EOF
3122    
3123  #=========================================  #=========================================
3124  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
3125    #===  for TAMC/TAF  ======================
3126    
3127    if test "x$OPENAD" = x ; then
3128    
3129    cat >>$MAKEFILE <<EOF
3130    
3131  TAMC           = ${TAMC}  TAMC           = ${TAMC}
3132  TAF            = ${TAF}  TAF            = ${TAF}
3133    
3134  TAF_EXTRA      = ${TAF_EXTRA}  TAF_EXTRA      = ${TAF_EXTRA}
3135  TAMC_EXTRA     = ${TAMC_EXTRA}  TAMC_EXTRA     = ${TAMC_EXTRA}
3136    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3137    
3138  EOF  EOF
3139    
# Line 2641  done Line 3151  done
3151  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
3152  echo >> $MAKEFILE  echo >> $MAKEFILE
3153  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
3154  AD_FILES=`cat ad_files`  AD_FILES=`cat $TMP.adSrcFiles`
3155  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3156      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
3157      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
3158  done  done
3159  echo >> $MAKEFILE  echo >> $MAKEFILE
3160  rm -f ad_files  rm -f $TMP.adSrcFiles
3161    
3162    if test $CAT_SRC_FOR_TAF = 0 ; then
3163    cat >>$MAKEFILE <<EOF
3164    
3165    # ... Utilities ...
3166    remove_comments:
3167            sed -i.bak -f \$(TOOLSDIR)/remove_comments_sed \$(AD_FILES)
3168            @-rm -f \$(AD_FILES:.$FS=.$FS.bak)
3169    adj_sed:
3170            sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_ad.$FS)
3171            @-rm -f \$(AD_FILES:.$FS=_ad.$FS.bak)
3172    ftl_sed:
3173            sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_tl.$FS)
3174            @-rm -f \$(AD_FILES:.$FS=_tl.$FS.bak)
3175    adobjfiles: \$(AD_FILES:.$FS=_ad.o)
3176    ftlobjfiles: \$(AD_FILES:.$FS=_tl.o)
3177    EOF
3178    fi
3179    
3180  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3181    
3182  # ... AD ...  # ... AD ...
3183  adall: \$(EXE_AD)  adall: ad_exe_target
3184  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
3185  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
3186    
3187  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ad_exe_target:
3188          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @echo Update AD_CONFIG.h and make \$(EXE_AD)
3189            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3190            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3191            @-rm -f ad_config.template
3192            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3193    
3194    ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3195            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3196          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3197          -rm -f ad_config.template          @-rm -f ad_config.template
3198          @make \$(F77FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3199          @make \$(FLOFILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3200          cat \$(FLOFILES) \$(AD_FILES) > ad_input_code.$FS          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3201    
3202  ad_taf_output.$FS: ad_input_code.$FS  adtafonly:
3203          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3204          ls -l ad_input_code_ad.$FS          ls -l ad_input_code_ad.$FS
3205          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3206    
3207  adtafonly:  EOF
3208    
3209    if test $CAT_SRC_FOR_TAF = 1 ; then
3210    cat >>$MAKEFILE <<EOF
3211    # ... send 1 file to TAF ...
3212    ad_taf_output.$FS: ad_input_code.$FS
3213            @-rm -f ad_input_code_ad.$FS ; echo ''
3214          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3215          ls -l ad_input_code_ad.$FS          ls -l ad_input_code_ad.$FS
3216          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3217    
3218  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)  \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3219          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3220    
3221  ad_tamc_output.$FS: ad_input_code.$FS  adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
         \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS  
         cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS  
3222    
3223  ad_tamc: ad_tamc_output.o \$(OBJFILES)  EOF
3224          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)  
3225    else
3226    cat >>$MAKEFILE <<EOF
3227    # ... send multiple files to TAF ...
3228    ad_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES)
3229            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3230            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3231            @-rm -f ad_config.template
3232            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3233            @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3234            @-rm -f \$(AD_FILES:.$FS=_ad.$FS) \$(AD_FILES:.$FS=_ad.o); echo ''
3235            \$(MAKE) -f \$(MAKEFILE) remove_comments
3236            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) \$(FLOWFILES) \$(AD_FILES)
3237            \$(MAKE) -f \$(MAKEFILE) adj_sed
3238            cat \$(AD_FILES:.$FS=_ad.$FS) > ad_taf_output.$FS
3239    
3240    \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3241            \$(MAKE) -f \$(MAKEFILE) adobjfiles
3242            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_ad.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3243    
3244    adobj: ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
3245            \$(MAKE) -f \$(MAKEFILE) adobjfiles
3246    
3247    EOF
3248    fi
3249    
3250    cat >>$MAKEFILE <<EOF
3251  adonlyfwd:  adonlyfwd:
3252          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3253    
3254  adtrick:  adtrick:
3255          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3256    
3257    ad_tamc_output.$FS: ad_input_code.$FS
3258            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3259            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3260    
3261    ad_tamc: ad_tamc_output.o \$(OBJFILES)
3262            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3263    
3264  # ... FTL ...  # ... FTL ...
3265  ftlall: ftl_taf  ftlall: ftl_exe_target
3266  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
3267  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
3268    
3269  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ftl_exe_target:
3270          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3271          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3272          -rm -f ftl_config.template          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3273          @make \$(F77FILES)          @-rm -f ad_config.template
3274          @make \$(AD_FLOW_FILES)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
         cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS  
3275    
3276  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_input_code.$FS: \$(AD_FILES)
3277          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3278          ls -l ftl_input_code_ftl.$FS          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3279          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          @-rm -f ad_config.template
3280            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3281            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3282            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3283    
3284  ftltafonly:  ftltafonly:
3285          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3286          ls -l ftl_input_code_ftl.$FS          ls -l ftl_input_code_tl.$FS
3287          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3288    
3289    EOF
3290    
3291    if test $CAT_SRC_FOR_TAF = 1 ; then
3292    cat >>$MAKEFILE <<EOF
3293    # ... send 1 file to TAF ...
3294    ftl_taf_output.$FS: ftl_input_code.$FS
3295            @-rm -f ftl_input_code_tl.$FS ; echo ''
3296            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3297            ls -l ftl_input_code_tl.$FS
3298            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3299    
3300    \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3301            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3302    
3303    EOF
3304    
3305    else
3306    cat >>$MAKEFILE <<EOF
3307    # ... send multiple files to TAF ...
3308    ftl_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES)
3309            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3310            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3311            @-rm -f ad_config.template
3312            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3313            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3314            @-rm -f \$(AD_FILES:.$FS=_tl.$FS) \$(AD_FILES:.$FS=_tl.o); echo ''
3315            \$(MAKE) -f \$(MAKEFILE) remove_comments
3316            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) \$(AD_FLOW_FILES) \$(AD_FILES)
3317            \$(MAKE) -f \$(MAKEFILE) ftl_sed
3318            cat \$(AD_FILES:.$FS=_tl.$FS) > ftl_taf_output.$FS
3319    
3320    \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3321            \$(MAKE) -f \$(MAKEFILE) ftlobjfiles
3322            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_tl.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3323    
3324  ftl_taf: ftl_taf_output.o \$(OBJFILES)  EOF
3325          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)  fi
3326    
3327    cat >>$MAKEFILE <<EOF
3328  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
3329          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3330          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3331    
3332  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3333          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
3334    
3335  # ... SVD ...  # ... SVD ...
3336  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
# Line 2744  svd_touch: Line 3352  svd_touch:
3352          touch ad_taf_output.$FS ftl_taf_output.$FS          touch ad_taf_output.$FS ftl_taf_output.$FS
3353          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3354          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3355          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3356          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3357          -rm -f ftl_config.template          @-rm -f ad_config.template
3358    
3359  #=========================================  EOF
3360    
3361    fi
3362    
3363    #===  for OpenAD  ========================
3364    
3365    if test "x$OPENAD" != x ; then
3366    
3367    # ============ begin OpenAD specific section ==============
3368    
3369    cat >>$MAKEFILE <<EOF
3370    # ... OpenAD ...
3371    
3372    # all the source files linked from the various locations:
3373    ALL_LINKED_FILES= \
3374    \$(F77_SRC_FILES) \
3375    \$(C_SRC_FILES) \
3376    \$(H_SRC_FILES) \
3377    \$(F90_SRC_FILES) \
3378    \$(SPECIAL_FILES)
3379    
3380    ifndef OPENADROOT
3381      \$(error "Error:  environment variable OPENADROOT not defined!")
3382    endif
3383    
3384    ifndef XAIFSCHEMAROOT
3385      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
3386    endif
3387    
3388    ifndef XAIFBOOSTERROOT
3389      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
3390    endif
3391    
3392    EOF
3393    
3394    echo "  Add the source list for common block to module conversion "
3395    echo >> $MAKEFILE
3396    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3397    for i in `cat ${OAD_CB2M_FILES}` ; do
3398      echo    " \\" >> $MAKEFILE
3399      printf " $i" >> $MAKEFILE
3400    done
3401    echo >> $MAKEFILE
3402    
3403    echo "  Add the source list for AD code generation"
3404    echo >> $MAKEFILE
3405    printf "AD_FILES = " >> $MAKEFILE
3406    for i in `cat ${OAD_CB2M_FILES}` ; do
3407      echo    " \\" >> $MAKEFILE
3408      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3409    done
3410    AD_FILES=`cat $TMP.adSrcFiles`
3411    for i in $AD_FILES ; do
3412      basename=${i%%.f}
3413      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3414      if test -z "$toBeIgnored" ; then
3415        echo    " \\" >> $MAKEFILE
3416        printf " $i" >> $MAKEFILE
3417      fi
3418    done
3419    echo >> $MAKEFILE
3420    rm -f $TMP.adSrcFiles
3421    
3422    cat >>$MAKEFILE <<EOF
3423    
3424    adAll: ad_exe_target
3425    .PHONY: adAll
3426    
3427    ad_exe_target:
3428            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3429            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3430            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3431            @-rm -f ad_config.template
3432            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3433    
3434    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3435    
3436    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3437    
3438    .PHONY: adDepend
3439    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3440            \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3441            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3442            -rm -f makedepend.out
3443    
3444    OPENAD_SUPPORT_F90_SRC_FILES = \
3445    w2f__types.F90 \
3446    OAD_active.F90 \
3447    OAD_cp.F90 \
3448    OAD_rev.F90 \
3449    OAD_tape.F90 \
3450    OAD_regular_cp.F90 \
3451    revolve.F90
3452    
3453    OPENAD_SUPPORT_C_SRC_FILES = \
3454    iaddr.c \
3455    timeRatio.c
3456    
3457    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3458            cat \$^ > \$@
3459    
3460    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3461            cat \$^ > \$@
3462    
3463    f95_test.out: f95_test_mods.f90 f95_test.f90
3464            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3465            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3466    
3467    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3468    
3469    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3470    
3471    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3472    
3473    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3474            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3475    
3476    # create sources files modules from header files containing common blocks
3477    %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3478            \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3479    
3480    # create new header files with USE statements for the new modules made above
3481    %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3482            \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3483    
3484    # change the include directives of everybody to refer to  the new header files with the USE statements
3485    %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3486            \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3487    
3488    # makefile debug rule
3489    small_f: \$(CB2M_F90_PP_SRC_FILES)
3490    .PHONY: small_f
3491    
3492    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3493            cat \$^ > \$@
3494    
3495    # canonicalizer
3496    ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3497            \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3498    
3499    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3500    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3501            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3502    
3503    # F -> WHIRL
3504    ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3505            \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
3506    
3507    # WHIRL -> XAIF
3508    ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3509            \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3510    
3511    # XAIF -> XAIF'
3512    ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3513            \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3514    
3515    # XAIF' -> WHIRL'
3516    ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3517            \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3518    
3519    # WHIRL' -> F'
3520    ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3521            \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3522    
3523    # insert template directives
3524    ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3525            \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3526    
3527    PPEXTRAS=\$(notdir \$(wildcard \${OADTOOLS}/ad_template.*.F)) ad_inline.F
3528    # postprocess F'
3529    postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3530            \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ad_inline.f \$<
3531            # the target is a placeholder to trigger a single execution of the rule
3532            touch \$@
3533    # put this so make knows about the postprocessing output
3534    OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
3535    
3536    # link the XAIF schema files
3537    %.xsd:
3538            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3539    
3540    # link the support files:
3541    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES) \$(PPEXTRAS):
3542            \$(LN) \${OADTOOLS}/\$@ .
3543    
3544    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag
3545    
3546    # ============ end OpenAD specific section ==============
3547    
3548  EOF  EOF
3549    
3550    fi
3551    
3552    #=========================================
3553    
3554  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3555      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3556  fi  fi
# Line 2778  for i in $NOOPTFILES ; do Line 3577  for i in $NOOPTFILES ; do
3577  done  done
3578    
3579  echo "  Add rules for links"  echo "  Add rules for links"
3580  cat srclinks.tmp >> $MAKEFILE  cat $TMP.srclinks >> $MAKEFILE
3581  rm -f srclinks.tmp  rm -f $TMP.srclinks
3582    
3583  echo "  Adding makedepend marker"  echo "  Adding makedepend marker"
3584  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE
# Line 2787  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3586  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3586  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3587    
3588  # Create special header files  # Create special header files
3589  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3590  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3591      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3592  else  else
# Line 2801  else Line 3600  else
3600      fi      fi
3601  fi  fi
3602  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3603      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3604  fi  fi
3605    
   
3606  #  Write the "state" for future records  #  Write the "state" for future records
3607  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3608      printf "" > genmake_state      printf "" > genmake_state
3609      for i in $gm_state ; do      for i in $gm_state ; do
3610          t1="t2=\$$i"          t1="t2=\$$i"
3611          eval $t1          eval $t1
3612          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3613      done      done
3614  fi  fi

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