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revision 1.92 by edhill, Fri Jul 30 15:59:33 2004 UTC revision 1.171 by heimbach, Sat Jun 14 12:57:13 2008 UTC
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24  }  }
25    
26  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
27  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
29      cpp_options=$1      cpp_options=$1
30      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38  }  }
39    
40  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 39  test_for_string_in_file() { Line 47  test_for_string_in_file() {
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
49          grep -i "$strng" $file          grep -i "$strng" $file
50          return 1          exit 99
51      fi      fi
52      return 0      return 0
53  }  }
# Line 122  EOF Line 130  EOF
130        stop        stop
131        end        end
132  EOF  EOF
133      test -f Makefile  &&  mv -f Makefile Makefile.bak      test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
134      cat <<EOF >> Makefile      cat <<EOF >> $MAKEFILE
 %.$tfs : %.F  
135  .SUFFIXES:  .SUFFIXES:
136  genmake_hello.$tfs: genmake_hello.F  .SUFFIXES: .$tfs .F
137          $LN genmake_hello.F genmake_hello.$tfs  .F.$tfs:
138            $LN \$< \$@
139  EOF  EOF
140      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE "genmake_hello."$tfs > /dev/null 2>&1
141      RETVAL=$?      RETVAL=$?
# Line 148  EOF Line 156  EOF
156              return              return
157          fi          fi
158      fi      fi
159      rm -f genmake_hello.* Makefile      rm -f genmake_hello.* $MAKEFILE
160      test -f Makefile  &&  mv -f Makefile.bak Makefile      test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
161    
162      #  If we make it here, use the extensions      #  If we make it here, use the extensions
163      FS=$tfs      FS=$tfs
# Line 181  look_for_makedepend()  { Line 189  look_for_makedepend()  {
189      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
190          which makedepend > /dev/null 2>&1          which makedepend > /dev/null 2>&1
191          RV0=$?          RV0=$?
192            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
193            #  echo 'MAKEFILE="'$MAKEFILE'"'
194            cat <<EOF >> $MAKEFILE
195    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
196    #
197    #   Some "makedepend" implementations will die if they cannot
198    #   find a Makefile -- so this file is here to gives them an
199    #   empty one to find and parse.
200    EOF
201          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
202        program test        program test
203        write(*,*) 'test'        write(*,*) 'test'
# Line 189  look_for_makedepend()  { Line 206  look_for_makedepend()  {
206  EOF  EOF
207          makedepend genmake_tc.f > /dev/null 2>&1          makedepend genmake_tc.f > /dev/null 2>&1
208          RV1=$?          RV1=$?
209            test -f $MAKEFILE  &&  rm -f $MAKEFILE
210            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
211          if test "x${RV0}${RV1}" = x00 ; then          if test "x${RV0}${RV1}" = x00 ; then
212              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
213          else          else
# Line 237  build_cyrus_makedepend()  { Line 256  build_cyrus_makedepend()  {
256      fi      fi
257  }  }
258    
259    
260    build_embed_encode()
261    {
262        printf "  building the embed-encode utility...  "
263        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265                echo
266                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267                echo
268                EMBED_SRC=f
269                return 1
270            fi
271            clist="cc gcc c89 $CC"
272            for ic in $clist ; do
273                comm="$ic -o encode_files encode_files.c"
274                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275                RETVAL=$?
276                if test "x$RETVAL" = x0 ; then
277                    echo "OK"
278                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279                    return 0
280                fi
281            done
282            echo
283            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
284            echo "      so it has been disabled"
285            echo
286            EMBED_SRC=f
287            return 1
288        fi
289        echo "OK"
290        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291    }
292    
293    
294  # Guess possible config options for this host  # Guess possible config options for this host
295  find_possible_configs()  {  find_possible_configs()  {
296    
# Line 271  find_possible_configs()  { Line 325  find_possible_configs()  {
325    
326      #================================================================      #================================================================
327      #  look for possible C compilers      #  look for possible C compilers
328      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329      p_CC=      p_CC=
330      for c in $tmp ; do      for c in $tmp ; do
331          rm -f ./genmake_hello.c  ./genmake_hello          rm -f ./genmake_hello.c  ./genmake_hello
# Line 310  EOF Line 364  EOF
364    
365      #================================================================      #================================================================
366      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
367      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 342  EOF Line 396  EOF
396      else      else
397          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
398          echo "   "$p_FC          echo "   "$p_FC
399          if test "x$FC" = x ; then      fi
400              FC=`echo $p_FC | $AWK '{print $1}'`  
401              echo "  Setting FORTRAN compiler to: "$FC      #  Use the first of the compilers found in the current PATH
402          fi      #  that has a correctly-named optfile
403        if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
404            for i in $p_FC ; do
405                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
406                if test -r $OPTFILE ; then
407                    echo "  Setting OPTFILE to: "$OPTFILE
408                    break
409                fi
410            done
411      fi      fi
412    
413      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
# Line 516  Usage: "$0" [OPTIONS] Line 578  Usage: "$0" [OPTIONS]
578            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
579            is being used.            is being used.
580    
581        -ignoretime | -ignore_time | --ignoretime | --ignore_time
582              Ignore all the "wall clock" routines entirely.  This will
583              not in any way hurt the model results -- it simply means
584              that the code that checks how long the model spends in
585              various routines will give junk values.
586    
587        -ts | --ts
588              Produce timing information per timestep
589        -papis | --papis
590              Produce summary MFlop/s (and IPC) with PAPI per timestep
591        -pcls | --pcls
592              Produce summary MFlop/s etc. with PCL per timestep
593        -foolad | --foolad
594              Fool the AD code generator
595        -papi | --papi
596              Performance analysis with PAPI
597        -pcl | --pcl
598              Performance analysis with PCL
599        -hpmt | --hpmt
600              Performance analysis with the HPM Toolkit
601    
602        -gsl | --gsl
603              Use GSL to control floating point rounding and precision
604        -devel | --devel
605              Add additional warning and debugging flags for development
606    
607      -mpi | --mpi      -mpi | --mpi
608            Include MPI header files and link to MPI libraries            Include MPI header files and link to MPI libraries
609      -mpi=PATH | --mpi=PATH      -mpi=PATH | --mpi=PATH
610            Include MPI header files and link to MPI libraries using MPI_ROOT            Include MPI header files and link to MPI libraries using MPI_ROOT
611            set to PATH. i.e. Include files from $PATH/include, link to libraries            set to PATH. i.e. Include files from \$PATH/include, link to libraries
612            from $PATH/lib and use binaries from $PATH/bin.            from \$PATH/lib and use binaries from \$PATH/bin.
613    
614        -es | --es | -embed-source | --embed-source
615              Embed a tarball containing the full source code
616              (including the Makefile, etc.) used to build the
617              executable [off by default]
618    
619      -bash NAME      -bash NAME
620            Explicitly specify the Bourne or BASH shell to use            Explicitly specify the Bourne or BASH shell to use
# Line 581  WARNING: Please contact <MITgcm-support@ Line 674  WARNING: Please contact <MITgcm-support@
674  EOF  EOF
675          return 1          return 1
676      fi      fi
677      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
678        subroutine tcall( string )        subroutine tcall( string )
679        character*(*) string        character*(*) string
680        call tsub( string )        call tsub( string )
681        end        end
682  EOF  EOF
683      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
684      RETVAL=$?      RETVAL=$?
685      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
686          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 653  void FC_NAMEMANGLE(cloc) ( double *curti Line 746  void FC_NAMEMANGLE(cloc) ( double *curti
746   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
747  }  }
748  EOF  EOF
749      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
750        echo $COMM >> genmake_warnings
751        $COMM >> genmake_warnings 2>&1
752      RET_C=$?      RET_C=$?
753      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
754        program hello        program hello
755        Real*8 wtime        REAL*8 wtime
756        external cloc        external cloc
757        call cloc(wtime)        call cloc(wtime)
758        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
759        end program hello        end
760  EOF  EOF
761      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
762        echo $COMM >> genmake_warnings
763        $COMM >> genmake_warnings 2>&1
764      RET_F=$?      RET_F=$?
765      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
766      RETVAL=$?      RETVAL=$?
767      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
768          HAVE_CLOC=t          HAVE_CLOC=t
# Line 675  EOF Line 772  EOF
772  }  }
773    
774    
775    check_HAVE_SIGREG()  {
776        if test ! "x$HAVE_SIGREG" = x ; then
777            return
778        fi
779        get_fortran_c_namemangling
780        cat <<EOF > genmake_tc_1.c
781    $FC_NAMEMANGLE
782    #include <stdlib.h>
783    #include <stdio.h>
784    #include <signal.h>
785    #include <errno.h>
786    #include <ucontext.h>
787    
788    int * ip;
789    
790    static void killhandler(
791        unsigned int sn, siginfo_t  si, struct ucontext *sc )
792    {
793        *ip = *ip + 1;
794        return;
795    }
796    
797    void FC_NAMEMANGLE(sigreg) (int * aip)
798    {
799        struct sigaction s;
800        ip = aip;
801        s.sa_flags = SA_SIGINFO;
802        s.sa_sigaction = (void *)killhandler;
803        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
804            printf("Sigaction returned error = %d\n", errno);
805            exit(0);
806        }
807        return;
808    }
809    EOF
810        COMM="$CC $CFLAGS -c genmake_tc_1.c"
811        echo $COMM >> genmake_warnings
812        $COMM >> genmake_warnings 2>&1
813        RET_C=$?
814        cat <<EOF > genmake_tc_2.$FS
815          program hello
816          integer anint
817          common /iv/ anint
818          external sigreg
819          call sigreg(anint)
820          end
821    EOF
822        echo >> genmake_warnings
823        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
824        cat genmake_tc_2.$FS >> genmake_warnings
825        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
826        echo $COMM >> genmake_warnings
827        $COMM >> genmake_warnings 2>&1
828        RETVAL=$?
829        if test "x$RETVAL" = x0 ; then
830            HAVE_SIGREG=t
831            DEFINES="$DEFINES -DHAVE_SIGREG"
832        fi
833        rm -f genmake_tc*
834    }
835    
836    
837    check_HAVE_SETRLSTK()  {
838        if test "x$HAVE_SETRLSTK" = xt ; then
839            DEFINES="$DEFINES -DHAVE_SETRLSTK"
840            return
841        fi  
842        if test ! "x$HAVE_SETRLSTK" = x ; then
843            return
844        fi
845        get_fortran_c_namemangling
846        cat <<EOF > genmake_tc_1.c
847    $FC_NAMEMANGLE
848    #include <sys/time.h>
849    #include <sys/resource.h>
850    #include <unistd.h>
851    void FC_NAMEMANGLE(setrlstk) ()
852    {
853        struct rlimit rls;
854        rls.rlim_cur = RLIM_INFINITY;
855        rls.rlim_max = RLIM_INFINITY;
856        setrlimit(RLIMIT_STACK, &rls);
857        return;
858    }
859    EOF
860        COMM="$CC $CFLAGS -c genmake_tc_1.c"
861        echo $COMM >> genmake_warnings
862        $COMM >> genmake_warnings 2>&1
863        RET_C=$?
864        cat <<EOF > genmake_tc_2.$FS
865          program hello
866          external setrlstk
867          call setrlstk()
868          end
869    EOF
870        echo >> genmake_warnings
871        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
872        cat genmake_tc_2.$FS >> genmake_warnings
873        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
874        echo $COMM >> genmake_warnings
875        $COMM >> genmake_warnings 2>&1
876        RETVAL=$?
877        if test "x$RETVAL" = x0 ; then
878            HAVE_SETRLSTK=t
879            DEFINES="$DEFINES -DHAVE_SETRLSTK"
880        fi
881        rm -f genmake_tc*
882    }
883    
884    
885    check_HAVE_STAT()  {
886        get_fortran_c_namemangling
887        cat <<EOF > genmake_tc_1.c
888    $FC_NAMEMANGLE
889    #include <stdio.h>
890    #include <stdlib.h>
891    #include <unistd.h>
892    #include <sys/stat.h>
893    #include <sys/types.h>
894    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
895    {
896        char name[512];
897        struct stat astat;
898    
899        name[0] = 'a'; name[1] = '\0';
900        if (! stat(name, &astat))
901            *nbyte = (int)(astat.st_size);
902        else
903            *nbyte = -1;
904    }
905    EOF
906        COMM="$CC $CFLAGS -c genmake_tc_1.c"
907        echo $COMM >> genmake_warnings
908        $COMM >> genmake_tc.log 2>&1
909        RET_C=$?
910        cat <<EOF > genmake_tc_2.$FS
911          program hello
912          integer nbyte
913          call tfsize(nbyte)
914          print *," HELLO WORLD", nbyte
915          end
916    EOF
917        echo >> genmake_warnings
918        echo "running: check_HAVE_STAT()" >> genmake_warnings
919        cat genmake_tc_2.$FS >> genmake_warnings
920        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
921        echo $COMM >> genmake_warnings
922        $COMM >> genmake_tc.log 2>&1
923        RETVAL=$?
924        if test "x$RETVAL" = x0 ; then
925            HAVE_STAT=t
926            DEFINES="$DEFINES -DHAVE_STAT"
927        fi
928        rm -f genmake_tc*
929    }
930    
931    
932  check_netcdf_libs()  {  check_netcdf_libs()  {
933      echo "" > genmake_tnc.log      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
934      cat <<EOF > genmake_tnc.for          return
935        fi
936        echo >> genmake_warnings
937        echo "running: check_netcdf_libs()" >> genmake_warnings
938        cat <<EOF > genmake_tnc.F
939        program fgennc        program fgennc
940  #include "netcdf.inc"  #include "netcdf.inc"
941    EOF
942        if test ! "x$MPI" = x ; then
943            echo '#include "mpif.h"' >> genmake_tnc.F
944        fi
945        cat <<EOF >> genmake_tnc.F
946        integer iret, ncid, xid        integer iret, ncid, xid
947        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
948        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
# Line 689  check_netcdf_libs()  { Line 952  check_netcdf_libs()  {
952        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
953        end        end
954  EOF  EOF
955      #echo "$CPP $DEFINES $INCLUDES"      echo "===  genmake_tnc.F  ===" > genmake_tnc.log
956      $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \      cat genmake_tnc.F >> genmake_tnc.log
957          &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
958        RET_CPP=f
959        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
960        echo "$COMM" >> genmake_tnc.log
961        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
962        if test "x$RET_CPP" = xf ; then
963            echo "  WARNING: CPP failed to pre-process the netcdf test." \
964                >> genmake_tnc.log
965            echo "    Please check that \$INCLUDES is properly set." \
966                >> genmake_tnc.log
967        fi
968        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
969        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
970        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
971            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
972      RET_COMPILE=$?      RET_COMPILE=$?
973      test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1      cat genmake_tnc.log >> genmake_warnings
974      RETVAL=$?  
975      if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then      #EH3  Remove test program execution for machines that either disallow
976        #EH3  execution or cannot support it (eg. cross-compilers)
977        #EH3
978        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
979        #EH3 RETVAL=$?
980        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
981    
982        if test "x$RET_COMPILE" = x0 ; then
983          HAVE_NETCDF=t          HAVE_NETCDF=t
984      else      else
985          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
986          $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \          echo "try again with added '-lnetcdf'" > genmake_tnc.log
987              &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
988              $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
989            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
990            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
991                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
992                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
993          RET_COMPILE=$?          RET_COMPILE=$?
994          test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1          cat genmake_tnc.log >> genmake_warnings
995          RETVAL=$?          if test "x$RET_COMPILE" = x0 ; then
         if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then  
996              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
997              HAVE_NETCDF=t              HAVE_NETCDF=t
998          else          else
999            # try again with "-lnetcdff" added to the libs
1000                echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1001                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1002                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1003                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1004                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1005                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1006                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1007                RET_COMPILE=$?
1008              cat genmake_tnc.log >> genmake_warnings              cat genmake_tnc.log >> genmake_warnings
1009                if test "x$RET_COMPILE" = x0 ; then
1010                    LIBS="$LIBS -lnetcdff -lnetcdf"
1011                    HAVE_NETCDF=t
1012                fi
1013          fi          fi
1014      fi      fi
1015      rm -f genmake_tnc*      rm -f genmake_tnc*
# Line 728  PLATFORM= Line 1028  PLATFORM=
1028  LN=  LN=
1029  S64=  S64=
1030  KPP=  KPP=
1031  FC=  #FC=
1032  CC=  #CC=gcc
1033  CPP=  #CPP=
1034  LINK=  LINK=
1035  DEFINES=  DEFINES=
1036  PACKAGES=  PACKAGES=
1037  ENABLE=  ENABLE=
1038  DISABLE=  DISABLE=
1039  MAKEFILE=  # MAKEFILE=
1040  #MAKEDEPEND=  # MAKEDEPEND=
1041  PDEPEND=  PDEPEND=
1042  DUMPSTATE=t  DUMPSTATE=t
1043  PDEFAULT=  PDEFAULT=
1044  OPTFILE=  OPTFILE=
1045  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1046  FFLAGS=  FFLAGS=
1047  FOPTIM=  FOPTIM=
1048    FEXTRAFLAGS=
1049  CFLAGS=  CFLAGS=
1050  KFLAGS1=  KFLAGS1=
1051  KFLAGS2=  KFLAGS2=
# Line 755  NOOPTFILES= Line 1056  NOOPTFILES=
1056  NOOPTFLAGS=  NOOPTFLAGS=
1057  MPI=  MPI=
1058  MPIPATH=  MPIPATH=
1059    TS=
1060    PAPIS=
1061    PCLS=
1062    FOOLAD=
1063    PAPI=
1064    PCL=
1065    HPMT=
1066    GSL=
1067    DEVEL=
1068    HAVE_TEST_L=
1069    
1070  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1071  HAVE_SYSTEM=  HAVE_SYSTEM=
1072  HAVE_FDATE=  HAVE_FDATE=
1073  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1074  HAVE_CLOC=  HAVE_CLOC=
1075    # HAVE_SETRLSTK=
1076    HAVE_STAT=
1077  HAVE_NETCDF=  HAVE_NETCDF=
1078  HAVE_ETIME=  HAVE_ETIME=
1079    IGNORE_TIME=
1080    
1081  MODS=  MODS=
1082  TOOLSDIR=  TOOLSDIR=
# Line 773  STANDARDDIRS="USE_THE_DEFAULT" Line 1087  STANDARDDIRS="USE_THE_DEFAULT"
1087  G2ARGS=  G2ARGS=
1088  BASH=  BASH=
1089  PWD=`pwd`  PWD=`pwd`
1090  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1091  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1092  THISHOSTNAME=`hostname`  EMBED_SRC=
1093    THISHOST=`hostname`
1094  THISCWD=`pwd`  THISCWD=`pwd`
1095  THISDATE=`date`  THISDATE=`date`
1096    THISUSER=`echo $USER`
1097    THISVER=
1098  MACHINE=`uname -a`  MACHINE=`uname -a`
1099  EXECUTABLE=  EXECUTABLE=
1100  EXEHOOK=  EXEHOOK=
# Line 806  TAMC_EXTRA= Line 1123  TAMC_EXTRA=
1123    
1124  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1125  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1126  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"
1127    
1128  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1129  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1130  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1131  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1132  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1133  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
1134    
# Line 836  EOF Line 1153  EOF
1153    
1154  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1155  gm_local="genmake_local"  gm_local="genmake_local"
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
1156  printf "  getting local config information:  "  printf "  getting local config information:  "
1157  if test -f $gm_local ; then  if test -f $gm_local ; then
1158      echo "using $gm_local"      echo "using $gm_local"
# Line 852  else Line 1163  else
1163      echo "none found"      echo "none found"
1164  fi  fi
1165    
1166  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1167  #OPTIONS=  #OPTIONS=
1168  #n=0  #n=0
1169  #for i ; do  #for i ; do
# Line 864  fi Line 1175  fi
1175  #done  #done
1176  #parse_options  #parse_options
1177  ac_prev=  ac_prev=
1178  for ac_option in $@ ; do  for ac_option in "$@" ; do
1179    
1180      G2ARGS="$G2ARGS \"$ac_option\""      G2ARGS="$G2ARGS \"$ac_option\""
1181    
# Line 986  for ac_option in $@ ; do Line 1297  for ac_option in $@ ; do
1297          -noieee | --noieee)          -noieee | --noieee)
1298              IEEE= ;;              IEEE= ;;
1299    
1300            -ts | --ts)
1301                TS=true ;;
1302            -papis | --papis)
1303                PAPIS=true ;;
1304            -pcls | --pcls)
1305                PCLS=true ;;
1306            -foolad | --foolad)
1307                FOOLAD=true ;;
1308            -papi | --papi)
1309                PAPI=true ;;
1310            -pcl | --pcl)
1311                PCL=true ;;
1312            -hpmt | --hpmt)
1313                HPMT=true ;;
1314    
1315            -gsl | --gsl)
1316                GSL=true ;;
1317    
1318            -devel | --devel)
1319                DEVEL=true ;;
1320    
1321          -mpi | --mpi)          -mpi | --mpi)
1322              MPI=true ;;              MPI=true ;;
1323          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
# Line 1009  for ac_option in $@ ; do Line 1341  for ac_option in $@ ; do
1341              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1342          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1343              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1344            
1345            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1346                IGNORE_TIME="-DIGNORE_TIME" ;;
1347    
1348            -es | --es | -embed-source | --embed-source)
1349                EMBED_SRC=t ;;
1350    
1351          -*)          -*)
1352              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 1024  for ac_option in $@ ; do Line 1362  for ac_option in $@ ; do
1362            
1363  done  done
1364    
1365    
1366  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1367      echo      echo
1368      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1369      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1370      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1371      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/devel_HOWTO/"
1372      echo      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1373      echo "  for directions on how to setup and use the new \"genmake2\" input"      echo "WARNING: ignore \"./.genmakerc\" and continue."
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
1374      echo      echo
1375  fi  fi
1376    
1377    #  Find the MITgcm ${ROOTDIR}
1378  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1379      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1380      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1381          ROOTDIR=".."          ROOTDIR=".."
1382      else      else
1383          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
# Line 1062  if test ! -d ${ROOTDIR} ; then Line 1401  if test ! -d ${ROOTDIR} ; then
1401      exit 1      exit 1
1402  fi  fi
1403    
1404    #  Find the MITgcm ${THISVER}
1405    if test -f "${ROOTDIR}/doc/tag-index" ; then
1406        THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`
1407    fi
1408    
1409    if test "x$MAKEFILE" = x ; then
1410        MAKEFILE="Makefile"
1411    fi
1412    
1413  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1414  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1415      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 1091  if test "x$OPTFILE" != xNONE ; then Line 1439  if test "x$OPTFILE" != xNONE ; then
1439      fi      fi
1440  fi  fi
1441    
 #  Check for broken systems that cannot correctly distinguish *.F and *.f files  
 # check_for_broken_Ff  
   
1442  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:  "
1443  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1444      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
# Line 1121  if test "x${AD_OPTFILE}" != xNONE ; then Line 1466  if test "x${AD_OPTFILE}" != xNONE ; then
1466      fi      fi
1467  fi  fi
1468    
1469    #====================================================================
1470    #  Set default values if not set by the optfile
1471    #
1472  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1473  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1474  if test ! "x$BASH" = x ; then  if test ! "x$BASH" = x ; then
# Line 1138  EOF Line 1486  EOF
1486      exit 1      exit 1
1487  fi  fi
1488  if test "x$CC" = x ; then  if test "x$CC" = x ; then
1489      cat <<EOF 1>&2      CC=cc
1490    #     cat <<EOF 1>&2
1491  Error: no C compiler: please specify using one of the following:  # Error: no C compiler: please specify using one of the following:
1492    1) within the options file ("CC=...") as specified by "-of=OPTFILE"  #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1493    2) the "-cc=XXX" command-line option  #   2) the "-cc=XXX" command-line option
1494    3) the "./genmake_local" file  #   3) the "./genmake_local" file
1495  EOF  # EOF
1496      exit 1  #     exit 1
1497  fi  fi
1498  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1499      LINK=$FC      LINK=$FC
# Line 1197  Error: The command "ln -s" failed -- ple Line 1545  Error: The command "ln -s" failed -- ple
1545  EOF  EOF
1546      exit 1      exit 1
1547  fi  fi
1548    test -L genmake_tlink > /dev/null 2>&1
1549    RETVAL=$?
1550    if test "x$RETVAL" = x0 ; then
1551        HAVE_TEST_L=t
1552    fi
1553  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1554    
1555  #  Check for broken *.F/*.f handling and fix if possible  #  Check for broken *.F/*.f handling and fix if possible
# Line 1207  if test ! "x$MPI" = x ; then Line 1560  if test ! "x$MPI" = x ; then
1560        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1561  fi  fi
1562    
1563    if test ! "x$TS" = x ; then
1564          echo "  Turning on timing per timestep"
1565          if test ! "x$FOOLAD" = x ; then
1566                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1567          else
1568                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1569          fi
1570          PACKAGES="$PACKAGES showflops"
1571    fi
1572    if test ! "x$PAPIS" = x ; then
1573          echo "  Turning on PAPI flop summary per timestep"
1574          echo "  Please make sure PAPIINC, PAPILIB are defined"
1575          if test ! "x$FOOLAD" = x ; then
1576                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1577          else
1578                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1579          fi
1580          INCLUDES="$INCLUDES $PAPIINC"
1581          LIBS="$LIBS $PAPILIB"
1582          PACKAGES="$PACKAGES showflops"
1583    fi
1584    if test ! "x$PCLS" = x ; then
1585          echo "  Turning on PCL counter summary per timestep"
1586          echo "  Please make sure PCLINC, PCLLIB are defined"
1587          if test ! "x$FOOLAD" = x ; then
1588                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1589          else
1590                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1591          fi
1592          INCLUDES="$INCLUDES $PCLINC"
1593          LIBS="$LIBS $PCLLIB"
1594          PACKAGES="$PACKAGES showflops"
1595    fi
1596    if test ! "x$PAPI" = x ; then
1597          if test ! "x$PAPIS" = x ; then
1598              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1599              echo "  Sticking with PAPI flop summary per timestep!"
1600          else
1601              echo "  Turning on performance analysis with PAPI"
1602              echo "  Please make sure PAPIINC, PAPILIB are defined"
1603              DEFINES="$DEFINES -DUSE_PAPI"
1604              INCLUDES="$INCLUDES $PAPIINC"
1605              LIBS="$LIBS $PAPILIB"
1606          fi
1607    fi
1608    if test ! "x$PCL" = x ; then
1609          if test ! "x$PCLS" = x ; then
1610              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1611              echo "  Sticking with PCL flop summary per timestep!"
1612          else
1613              echo "  Turning on performance analysis with PCL"
1614              echo "  Please make sure PCLINC, PCLLIB are defined"
1615              DEFINES="$DEFINES -DUSE_PCL"
1616              INCLUDES="$INCLUDES $PCLINC"
1617              LIBS="$LIBS $PCLLIB"
1618          fi
1619    fi
1620    if test ! "x$HPMT" = x ; then
1621          if test ! "x$PAPI" = x ; then
1622              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1623              echo "  Sticking with PAPI!"
1624          else if test ! "x$PCL" = x ; then
1625              echo "  PCL and the HPM Toolkit cannot co-exist!"
1626              echo "  Sticking with PCL!"
1627          else
1628              echo "  Turning on performance analysis with the HPM Toolkit"
1629              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1630              DEFINES="$DEFINES -DUSE_LIBHPM"
1631              INCLUDES="$INCLUDES $HPMTINC"
1632              LIBS="$LIBS $HPMTLIB"
1633          fi
1634          fi
1635    fi
1636    if test ! "x$GSL" = x ; then
1637          echo "  Turning on use of GSL to control floating point calculations"
1638          echo "  Please make sure GSLINC, GSLLIB are defined"
1639          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1640          INCLUDES="$INCLUDES $GSLINC"
1641          LIBS="$LIBS $GSLLIB"
1642    fi
1643    
1644  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1645  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1646  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1647        program hello        program hello
1648        call system('echo hi')        call system('echo hi')
1649        end        end
1650  EOF  EOF
1651  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1652  RETVAL=$?  RETVAL=$?
1653  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1654      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 1227  fi Line 1661  fi
1661  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1662    
1663  printf "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1664  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1665        program hello        program hello
1666        CHARACTER(128) string        CHARACTER*(128) string
1667        string = ' '        string = ' '
1668        call fdate( string )        call fdate( string )
1669        print *, string        print *, string
1670        end        end
1671  EOF  EOF
1672  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1673  RETVAL=$?  RETVAL=$?
1674  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1675      HAVE_FDATE=t      HAVE_FDATE=t
# Line 1248  fi Line 1682  fi
1682  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1683    
1684  printf "  Do we have the etime() command using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1685  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1686        program hello        program hello
1687        REAL*4 ACTUAL, TARRAY(2)        REAL*4 ACTUAL, TARRAY(2)
1688        EXTERNAL ETIME        EXTERNAL ETIME
# Line 1257  cat > genmake_tcomp.f <<EOF Line 1691  cat > genmake_tcomp.f <<EOF
1691        print *, tarray        print *, tarray
1692        end        end
1693  EOF  EOF
1694  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1695  RETVAL=$?  RETVAL=$?
1696  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1697      HAVE_ETIME=t      HAVE_ETIME=t
# Line 1275  if test "x$HAVE_CLOC" != x ; then Line 1709  if test "x$HAVE_CLOC" != x ; then
1709      echo "yes"      echo "yes"
1710  else  else
1711      echo "no"      echo "no"
1712        if test "x$EMBED_SRC" = xt ; then
1713            echo "    WARNING: you requested file embedding but it has"
1714            echo "      been disabled since C code cannot be called"
1715            EMBED_SRC=
1716        fi
1717    fi
1718    rm -f genmake_t*
1719    
1720    printf "  Can we unlimit the stack size using $FC...  "
1721    check_HAVE_SETRLSTK
1722    if test "x$HAVE_SETRLSTK" = xt ; then
1723        echo "yes"
1724    else
1725        echo "no"
1726    fi
1727    rm -f genmake_t*
1728    
1729    printf "  Can we register a signal handler using $FC...  "
1730    check_HAVE_SIGREG
1731    if test "x$HAVE_SIGREG" = xt ; then
1732        echo "yes"
1733    else
1734        echo "no"
1735    fi
1736    rm -f genmake_t*
1737    
1738    printf "  Can we use stat() through C calls...  "
1739    check_HAVE_STAT
1740    if test "x$HAVE_STAT" != x ; then
1741        echo "yes"
1742    else
1743        echo "no"
1744  fi  fi
1745  rm -f genmake_t*  rm -f genmake_t*
1746    
# Line 1285  if test "x$HAVE_NETCDF" != x ; then Line 1751  if test "x$HAVE_NETCDF" != x ; then
1751  else  else
1752      echo "no"      echo "no"
1753  fi  fi
1754    DEFINES="$DEFINES $IGNORE_TIME"
1755    
1756    if test "x$EMBED_SRC" = xt ; then
1757        build_embed_encode
1758    fi
1759    if test "x$EMBED_SRC" = xt ; then
1760        ENABLE="$ENABLE embed_files"
1761    fi
1762    
1763    
1764  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
# Line 1302  for d in $MODS ; do Line 1776  for d in $MODS ; do
1776  done  done
1777  echo  echo
1778    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1779  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1780      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1781  fi  fi
1782    
1783  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1784      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1785      if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then      if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1786          EXEDIR=../exe          EXEDIR=../exe
1787      else      else
# Line 1330  if test ! -d ${TOOLSDIR} ; then Line 1801  if test ! -d ${TOOLSDIR} ; then
1801      exit 1      exit 1
1802  fi  fi
1803  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1804      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1805        RETVAL=$?
1806        if test "x${RETVAL}" = x0 ; then
1807            S64='$(TOOLSDIR)/set64bitConst.sh'
1808        else
1809            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1810            RETVAL=$?
1811            if test "x${RETVAL}" = x0 ; then
1812                S64='$(TOOLSDIR)/set64bitConst.csh'
1813            else
1814                cat <<EOF
1815    
1816    ERROR: neither of the two default scripts:
1817    
1818        ${TOOLSDIR}/set64bitConst.sh
1819        ${TOOLSDIR}/set64bitConst.csh
1820    
1821      are working so please check paths or specify (with \$S64) a
1822      working version of this script.
1823    
1824    EOF
1825                exit 1
1826            fi
1827        fi
1828  fi  fi
1829  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1830    
# Line 1352  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1846  if test -r $ROOTDIR"/eesupp/src/Makefile
1846      fi      fi
1847  fi  fi
1848    
1849  #same for exch2  #same for pkg/exch2 and pkg/regrid
1850  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
1851      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1852      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
1853      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1
1854      if test "x${RETVAL}" = x0 ; then          RETVAL=$?
1855          rm -f make_exch2.errors          if test "x${RETVAL}" = x0 ; then
1856      else              rm -f make_${pdir}.errors
1857          echo "Error: problem encountered while building source files in exch2:"          else
1858          cat make_exch2.errors 1>&2              echo "Error: problem encountered while building source files in pkg/${pdir}:"
1859          exit 1              cat make_${pdir}.errors 1>&2
1860                exit 1
1861            fi
1862      fi      fi
1863  fi  done
1864    
1865  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1866  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
# Line 1475  done Line 1971  done
1971  rm -f ./.tmp_pack  rm -f ./.tmp_pack
1972  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1973    
1974    #  Check for package MNC: if NetCDF is available, then build the MNC
1975    #  template files ; otherwise, delete mnc from the list of packages.
1976    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1977    RETVAL=$?
1978    if test "x$RETVAL" = x0 ; then
1979        if test "x$HAVE_NETCDF" != xt ; then
1980            cat <<EOF
1981    
1982    *********************************************************************
1983    WARNING: the "mnc" package was enabled but tests failed to compile
1984      NetCDF applications.  Please check that:
1985    
1986      1) NetCDF is correctly installed for this compiler and
1987      2) the LIBS variable (within the "optfile") specifies the correct
1988           NetCDF library to link against.
1989    
1990      Due to this failure, the "mnc" package is now DISABLED.
1991    *********************************************************************
1992    
1993    EOF
1994            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
1995            DISABLE="$DISABLE mnc"
1996        else
1997            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
1998            RETVAL=$?
1999            if test "x${RETVAL}" = x0 ; then
2000                rm -f make_mnc.errors
2001            else
2002                echo "Error: problem encountered while building source files in pkg/mnc:"
2003                cat make_mnc.errors 1>&2
2004                exit 1
2005            fi
2006        fi
2007    fi
2008    
2009    #  Check for package PROFILES: if NetCDF is not available,
2010    #  then delete profiles from the list of available packages.
2011    echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1
2012    RETVAL=$?
2013    if test "x$RETVAL" = x0 ; then
2014        if test "x$HAVE_NETCDF" != xt ; then
2015            cat <<EOF
2016    
2017    *********************************************************************
2018    WARNING: the "profiles" package was enabled but tests failed to
2019      compile NetCDF applications.  Please check that:
2020    
2021      1) NetCDF is correctly installed for this compiler and
2022      2) the LIBS variable (within the "optfile") specifies the correct
2023           NetCDF library to link against.
2024    
2025      Due to this failure, the "profiles" package is now DISABLED.
2026    *********************************************************************
2027    
2028    EOF
2029            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2030            DISABLE="$DISABLE profiles"
2031        fi
2032    fi
2033    
2034  echo "  applying package dependency rules"  echo "  applying package dependency rules"
2035  ck=  ck=
2036  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
2037      i=0      i=0
2038      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2039      rtot=$nname      rtot=$nname
2040      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2041    
2042          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2043          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1515  while test "x$ck" != xtt ; do Line 2071  while test "x$ck" != xtt ; do
2071    
2072          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2073          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2074                #echo "   " $pname ": need to add :" $dname
2075              in_dis="f"              in_dis="f"
2076              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2077                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1559  for i in $PACKAGES ; do Line 2116  for i in $PACKAGES ; do
2116      fi      fi
2117  done  done
2118    
 #  Build MNC templates and check for ability to build and use NetCDF  
 echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  
 RETVAL=$?  
 if test "x$RETVAL" = x0 ; then  
     ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         rm -f make_mnc.errors  
     else  
         echo "Error: problem encountered while building source files in pkg/mnc:"  
         cat make_mnc.errors 1>&2  
         exit 1  
     fi  
     if test "x$HAVE_NETCDF" != xt ; then  
         cat <<EOF  
   
 WARNING: the "mnc" package has been enabled but tests failed to  
   compile and/or execute NetCDF applications.  Please check that:  
   
   1) NetCDF is installed for your compiler and  
   2) the LIBS variable (within the 'optfile") specifies the correct  
        NetCDF library to link against.  
     
 EOF  
     fi  
 fi  
   
2119  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2120  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2121  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
# Line 1605  for n in $names ; do Line 2135  for n in $names ; do
2135              fi              fi
2136          done          done
2137          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2138              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2139              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2140          fi          fi
2141      fi      fi
2142  done  done
2143  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2144  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2145      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2146      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2147  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2148    
# Line 1696  for i in $SOURCEDIRS ; do Line 2226  for i in $SOURCEDIRS ; do
2226          cat $i/$j >> ad_files          cat $i/$j >> ad_files
2227      done      done
2228  done  done
2229    if test ! "x"$FS = "x.f" ; then
2230        cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f
2231        mv -f ad_files_f ad_files
2232    fi
2233    
2234  echo  echo
2235  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
# Line 1707  for i in $INCLUDEDIRS ; do Line 2240  for i in $INCLUDEDIRS ; do
2240      fi      fi
2241  done  done
2242    
2243    if test ! "x$DIVA" = x ; then
2244        echo "  Creating the pseudo-MPI include directory"
2245        INCLUDES="-I./mpi_headers $INCLUDES"
2246        rm -rf ./mpi_headers
2247        mkdir -p ./mpi_headers
2248    
2249        if test "x$MPIINCLUDEDIR" = x ; then
2250            if test "x$MPIHOME" = x ; then
2251                MPIHOME='/usr'
2252            fi
2253            MPIINCLUDEDIR='$MPIHOME/include'
2254        fi
2255        
2256        if test -r $MPIINCLUDEDIR/mpif.h ; then
2257            for i in $MPI_HEADER_FILES; do
2258                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2259            done
2260    
2261            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2262        else
2263            echo " We cannot create a copy of mpif.h!"
2264    #       exit -1
2265        fi
2266    fi
2267    
2268  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2269  rm -rf .links.tmp  rm -rf .links.tmp
2270  mkdir .links.tmp  mkdir .links.tmp
2271    touch .links.tmp/foo
2272    if test ! -r ".links.tmp/foo" ; then
2273        echo
2274        echo "ERROR : something is wrong with your directory permissions or"
2275        echo "   your user file-creation mask (\"umask\") since creating a"
2276        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2277        echo "   not working.  Please try setting your umask to something"
2278        echo "   sane such as:"
2279        echo
2280        echo "      umask 0002"
2281        echo
2282        echo "   and please verify that you have the proper permissions for"
2283        echo "   creating sub-directories and then reading files created"
2284        echo "   within them."
2285        echo
2286        exit 1
2287    fi
2288    rm -f .links.tmp/foo
2289  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2290  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2291  printf 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
# Line 1725  for d in $alldirs ; do Line 2301  for d in $alldirs ; do
2301      for sf in $sfiles ; do      for sf in $sfiles ; do
2302          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2303              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2304                    ignore_f=f
2305                  case $d/$sf in                  case $d/$sf in
2306                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2307                            ignore_f=t
2308                          ;;                          ;;
2309                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2310                            ignore_f=t
2311                          ;;                          ;;
2312                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2313                            ignore_f=t
2314                          ;;                          ;;
2315                    *)                    ./BUILD_INFO.h)
2316                          touch .links.tmp/$sf                          ignore_f=t
                         deplist="$deplist $sf"  
                         ;;  
                 esac  
                 extn=`echo $sf | $AWK -F '.' '{print $NF}'`  
                 case $extn in  
                     F)  
                         echo    " \\"  >> srclist.inc  
                         printf " $sf" >> srclist.inc  
                         ;;  
                     F90)  
                         echo    " \\"  >> f90srclist.inc  
                         printf " $sf" >> f90srclist.inc  
                         ;;  
                     c)  
                         echo    " \\"  >> csrclist.inc  
                         printf " $sf" >> csrclist.inc  
2317                          ;;                          ;;
2318                      h)                    ./EMBEDDED_FILES.h)
2319                          echo    " \\"  >> hlist.inc                          ignore_f=t
                         printf " $sf" >> hlist.inc  
2320                          ;;                          ;;
2321                      flow)                    *)
2322                          echo    " \\"  >> ad_flow_files.inc                          #  For the local directory *ONLY*,
2323                          printf " $sf" >> ad_flow_files.inc                          #  ignore all soft-links
2324                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2325                                ignore_f=t
2326                            else
2327                                touch .links.tmp/$sf
2328                                deplist="$deplist $sf"
2329                            fi
2330                          ;;                          ;;
2331                  esac                  esac
2332                    if test "x$ignore_f" = xf ; then
2333                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2334                        case $extn in
2335                            F)
2336                                echo    " \\"  >> srclist.inc
2337                                printf " $sf" >> srclist.inc
2338                                ;;
2339                            F90)
2340                                echo    " \\"  >> f90srclist.inc
2341                                printf " $sf" >> f90srclist.inc
2342                                ;;
2343                            c)
2344                                echo    " \\"  >> csrclist.inc
2345                                printf " $sf" >> csrclist.inc
2346                                ;;
2347                            h)
2348                                echo    " \\"  >> hlist.inc
2349                                printf " $sf" >> hlist.inc
2350                                ;;
2351                            flow)
2352                                echo    " \\"  >> ad_flow_files.inc
2353                                printf " $sf" >> ad_flow_files.inc
2354                                ;;
2355                        esac
2356                    fi
2357              fi              fi
2358          fi          fi
2359      done      done
# Line 1767  for d in $alldirs ; do Line 2361  for d in $alldirs ; do
2361          echo "" >> srclinks.tmp          echo "" >> srclinks.tmp
2362          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2363          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2364          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2365    # This may happen when make thinks that a header file has to be "remade"
2366    # because a module it depends on has changed.  In this case we do nothing.
2367            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2368      fi      fi
2369  done  done
2370  rm -rf .links.tmp  rm -rf .links.tmp
# Line 1788  echo "#    $THISDATE" >> $MAKEFILE Line 2385  echo "#    $THISDATE" >> $MAKEFILE
2385  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2386  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
2387  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2388  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2389    
2390  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2391  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
# Line 1834  ENABLED_PACKAGES = ${ENABLED_PACKAGES} Line 2431  ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2431  DISABLED_PACKAGES = ${DISABLED_PACKAGES}  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2432    
2433  # These files are created by Makefile  # These files are created by Makefile
2434  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2435  EOF  EOF
2436    
2437  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2438        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2439    else
2440        echo "EMBEDDED_FILES = " >>$MAKEFILE
2441    fi
2442    
2443    #  Note: figure out some way to add Hyades JAM libraries here
2444  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2445  # Unix ln (link)  # Unix ln (link)
2446  LN = ${LN}  LN = ${LN}
# Line 1850  MAKEDEPEND = ${MAKEDEPEND} Line 2451  MAKEDEPEND = ${MAKEDEPEND}
2451  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
2452  KPP = ${KPP}  KPP = ${KPP}
2453  # Fortran compiler  # Fortran compiler
2454  FC = ${FC} in  FC = ${FC}
2455  # Fortran compiler  # Fortran compiler
2456  F90C = ${F90C}  F90C = ${F90C}
2457  # C compiler  # C compiler
# Line 1866  INCLUDES = ${INCLUDES} Line 2467  INCLUDES = ${INCLUDES}
2467  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2468  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2469  # Optim./debug for FC  # Optim./debug for FC
2470  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2471  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2472  # Optim./debug for FC  # Optim./debug for FC
2473  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
# Line 1877  CFLAGS = ${CFLAGS} Line 2478  CFLAGS = ${CFLAGS}
2478  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2479  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2480  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2481  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2482  # Name of the Mekfile  # Name of the Mekfile
2483  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2484    
# Line 1890  cat hlist.inc         >> $MAKEFILE Line 2491  cat hlist.inc         >> $MAKEFILE
2491  cat ad_flow_files.inc >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
2492  echo >> $MAKEFILE  echo >> $MAKEFILE
2493  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
2494  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE
2495  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
2496    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.FLOW)' >> $MAKEFILE
2497  echo >> $MAKEFILE  echo >> $MAKEFILE
2498  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2499  echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90 .FLOW .flow' >> $MAKEFILE
2500  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
2501  rm -f ad_flow_files.inc  rm -f ad_flow_files.inc
2502    
2503  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2504    
2505  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2506  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2507          @echo Creating \$@ ...          @echo Creating \$@ ...
2508          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2509  depend:  depend:
# Line 1910  depend: Line 2512  depend:
2512          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2513          -rm -f makedepend.out          -rm -f makedepend.out
2514    
2515    lib: libmitgcmuv.a
2516    
2517    libmitgcmuv.a: \$(OBJFILES)
2518            ar rcv libmitgcmuv.a \$(OBJFILES)
2519            ar d   libmitgcmuv.a main.o
2520    
2521  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
2522    
2523  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
# Line 1919  output.txt: \$(EXECUTABLE) Line 2527  output.txt: \$(EXECUTABLE)
2527          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2528    
2529  clean:  clean:
2530          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2531            -rm -rf *.o
2532            -rm -rf *.$FS *.FLOW
2533  Clean:  Clean:
2534          @make clean          @make clean
2535          @make cleanlinks          @make cleanlinks
2536          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES)
2537          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
2538            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2539  CLEAN:  CLEAN:
2540          @make Clean          @make Clean
2541          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2542          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2543          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2544          -rm -f \$(EXECUTABLE) output.txt STD*          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2545            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2546            -rm -rf mnc_test_*
2547    
2548  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2549  makefile:  makefile:
# Line 1938  makefile: Line 2551  makefile:
2551  cleanlinks:  cleanlinks:
2552          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2553    
2554  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are create by make
2555  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2556          @echo Creating \$@ ...          @echo Creating \$@ ...
2557          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
# Line 1949  FC_NAMEMANGLE.h: Line 2562  FC_NAMEMANGLE.h:
2562          @echo Creating \$@ ...          @echo Creating \$@ ...
2563          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
2564    
2565    BUILD_INFO.h:
2566            @echo Creating \$@ ...
2567    EOF
2568    
2569    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2570    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2571    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2572    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2573    
2574    if test "x$EMBED_SRC" = xt ; then
2575        cat >>$MAKEFILE <<EOF
2576    
2577    decode_files.o : EMBEDDED_FILES.h
2578    
2579    ##  \$(F77FILES)
2580    all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2581            @echo Creating \$@ ...
2582            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2583            -rm -f all_fF.tar.gz
2584            -gzip all_fF.tar
2585    
2586    EMBEDDED_FILES.h : all_fF.tar.gz
2587            @echo Creating \$@ ...
2588            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2589    
2590    EOF
2591    fi
2592    
2593    cat >>$MAKEFILE <<EOF
2594    
2595  # The normal chain of rules is (  .F - .$FS - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )
2596    
2597  %.o : %.F  ## This nullifies any default implicit rules concerning these two file types:
2598    ## %.o : %.F
2599    
2600  .F.$FS:  .F.$FS:
2601          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2602  .$FS.o:  .$FS.o:
2603          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2604  .F90.$FS90:  .F.o:
2605          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2606  .$FS90.o:  .F90.o:  
2607          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2608  .c.o:  .c.o:
2609          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2610    .flow.FLOW:
2611            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2612    
2613  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2614  .F.p:  .F.p:
# Line 1986  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2632  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2632  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2633  for i in $ad_vars ; do  for i in $ad_vars ; do
2634      name=$i      name=$i
2635      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2636      eval $t1      eval $t1
2637      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2638      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2639  done  done
2640    
2641  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
# Line 2006  rm -f ad_files Line 2652  rm -f ad_files
2652  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2653    
2654  # ... AD ...  # ... AD ...
2655  adall: ad_taf  adall: \$(EXE_AD)
2656  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
2657  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2658    
2659  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2660          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2661          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2662          -rm -f ad_config.template          -rm -f ad_config.template
2663          @make \$(F77FILES)          @make \$(F77FILES)
2664          @make \$(AD_FLOW_FILES)          @make \$(FLOFILES)
2665          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(FLOFILES) \$(AD_FILES) > ad_input_code.$FS
2666    
2667  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
2668          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2669          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2670    
2671  adtafonly:  adtafonly:
2672          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2673          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2674    
2675  ad_taf: ad_taf_output.o \$(OBJFILES)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2676          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2677    
2678  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.$FS: ad_input_code.$FS
2679          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2680          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2681    
2682  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2683          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2684    
2685    adonlyfwd:
2686            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2687    
2688    adtrick:
2689            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2690    
2691  # ... FTL ...  # ... FTL ...
2692  ftlall: ftl_taf  ftlall: ftl_taf
2693  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
2694  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
2695    
2696  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2697          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2698          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2699          -rm -f ftl_config.template          -rm -f ftl_config.template
2700          @make \$(F77FILES)          @make \$(F77FILES)
2701          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2702          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2703    
2704  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
2705          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2706          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2707    
2708  ftltafonly:  ftltafonly:
2709          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2710          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2711    
2712  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2713          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2714    
2715  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.$FS: ftl_input_code.$FS
2716          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2717          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2718    
2719  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2720          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2721    
2722    
2723  # ... SVD ...  # ... SVD ...
2724  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2725  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2726            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2727    svdall: svd_touch svd_taf
2728    
2729  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
2730          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2731    
2732            @echo "--->>> Only COMPILE svd code! <<<---"
2733            @echo "--->>> Assumes you previously <<<---"
2734            @echo "--->>> did make svdtaf        <<<---"
2735    
2736    svd_touch:
2737            @echo "--->>> Only COMPILE svd code! <<<---"
2738            @echo "--->>> Assumes you previously <<<---"
2739            @echo "--->>> did make svdtaf        <<<---"
2740            touch ad_taf_output.$FS ftl_taf_output.$FS
2741            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2742            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2743            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2744            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2745            -rm -f ftl_config.template
2746    
2747  #=========================================  #=========================================
2748    

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