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revision 1.17 by edhill, Tue Oct 21 20:10:12 2003 UTC revision 1.170 by jahn, Thu May 8 19:48:37 2008 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24      if test "x${RETVAL}" = x0 ; then  }
25          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"  
26          exit 99  # Search for particular CPP #cmds associated with MPI
27      fi  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1  test_for_mpi_in_cpp_eeoptions() {
29        cpp_options=$1
30        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38    }
39    
40    # Search for particular string in a file. Return 1 if detected, 0 if not
41    # usage: test_for_string_in_file file string
42    test_for_string_in_file() {
43        file=$1
44        strng=$2
45        grep -i "$strng" $file > /dev/null 2>&1
46      RETVAL=$?      RETVAL=$?
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
49            grep -i "$strng" $file
50          exit 99          exit 99
51      fi      fi
52      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
53  }  }
54    
55  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
# Line 62  expand_pkg_groups() { Line 75  expand_pkg_groups() {
75          done          done
76          PACKAGES=$new_packages          PACKAGES=$new_packages
77          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
78            return $matched
79      else      else
80          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
81      fi      fi
82  }  }
83    
84    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
85    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
86    check_for_broken_Ff()  {
87        #  Do we have defaults for $FS and/or $FS90 ?
88        tfs=f
89        tfs9=f90
90        if test "x$FS" != x ; then
91            tfs="$FS"
92        fi
93        if test "x$FS90" != x ; then
94            tfs9="$FS90"
95        fi
96    
97        #  First check the ability to create a *.F/.f pair.
98        cat <<EOF >> genmake_hello.F
99          program hello
100          write(*,*) 'hi'
101          stop
102          end
103    EOF
104        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
105        RETVAL=$?
106        if test "x$RETVAL" != x0 ; then
107            if test "x$FS" = x ; then
108                FS='for'
109                FS90='fr9'
110                check_for_broken_Ff
111            else
112                cat <<EOF 2>&1
113    ERROR: Your file system cannot distinguish between *.F and *.f files
114      (fails the "cp" test) and this program cannot find a suitable
115      replacement extension.  Please try a different build environment or
116      contact the <MITgcm-support@mitgcm.org> list for help.
117    
118    EOF
119                exit -1
120            fi
121            return
122        fi
123        rm -f genmake_hello.*
124    
125        #  Check the ability of ${MAKE} and ${LN} to use the current set
126        #  of extensions.
127        cat <<EOF >> genmake_hello.F
128          program hello
129          write(*,*) 'hi'
130          stop
131          end
132    EOF
133        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
134        cat <<EOF >> $MAKEFILE
135    .SUFFIXES:
136    .SUFFIXES: .$tfs .F
137    .F.$tfs:
138            $LN \$< \$@
139    EOF
140        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
141        RETVAL=$?
142        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
143            if test "x$FS" = x ; then
144                FS='for'
145                FS90='fr9'
146                check_for_broken_Ff
147            else
148                cat <<EOF 2>&1
149    ERROR: Your file system cannot distinguish between *.F and *.f files
150      (fails the "make/ln" test) and this program cannot find a suitable
151      replacement extension.  Please try a different build environment or
152      contact the <MITgcm-support@mitgcm.org> list for help.
153    
154    EOF
155                exit -1
156                return
157            fi
158        fi
159        rm -f genmake_hello.* $MAKEFILE
160        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
161    
162        #  If we make it here, use the extensions
163        FS=$tfs
164        FS90=$tfs9
165        return
166    }
167    
168    
169    look_for_makedepend()  {
170    
171        #  The "original" makedepend is part of the Imake system that is
172        #  most often distributed with XFree86 or with an XFree86 source
173        #  package.  As a result, many machines (eg. generic Linux) do not
174        #  have a system-default "makedepend" available.  For those
175        #  systems, we have two fall-back options:
176        #
177        #    1) a makedepend implementation shipped with the cyrus-imapd
178        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
179        #
180        #    2) a known-buggy xmakedpend shell script
181        #
182        #  So the choices are, in order:
183        #
184        #    1) use the user-specified program
185        #    2) use a system-wide default
186        #    3) locally build and use the cyrus implementation
187        #    4) fall back to the buggy local xmakedpend script
188        #
189        if test "x${MAKEDEPEND}" = x ; then
190            which makedepend > /dev/null 2>&1
191            RV0=$?
192            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
193            #  echo 'MAKEFILE="'$MAKEFILE'"'
194            cat <<EOF >> $MAKEFILE
195    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
196    #
197    #   Some "makedepend" implementations will die if they cannot
198    #   find a Makefile -- so this file is here to gives them an
199    #   empty one to find and parse.
200    EOF
201            cat <<EOF >> genmake_tc.f
202          program test
203          write(*,*) 'test'
204          stop
205          end
206    EOF
207            makedepend genmake_tc.f > /dev/null 2>&1
208            RV1=$?
209            test -f $MAKEFILE  &&  rm -f $MAKEFILE
210            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
211            if test "x${RV0}${RV1}" = x00 ; then
212                MAKEDEPEND=makedepend
213            else
214                echo "    a system-default makedepend was not found."
215                
216                #  Try to build the cyrus implementation
217                build_cyrus_makedepend
218                RETVAL=$?
219                if test "x$RETVAL" != x0 ; then
220                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
221                fi
222                rm -f ./genmake_cy_md
223            fi
224        else
225            #  echo "MAKEDEPEND=${MAKEDEPEND}"
226            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
227            RETVAL=$?
228            if test x"$RETVAL" = x0 ; then
229                build_cyrus_makedepend
230            fi
231        fi
232    }
233    
234    
235    build_cyrus_makedepend()  {
236        rm -f ./genmake_cy_md
237        (
238            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
239                &&  ./configure > /dev/null 2>&1  \
240                &&  make > /dev/null 2>&1
241            if test -x ./makedepend.exe ; then
242                $LN ./makedepend.exe ./makedepend
243            fi
244            ./makedepend ifparser.c > /dev/null 2>&1  \
245                &&  echo "true"
246        ) > ./genmake_cy_md
247        grep true ./genmake_cy_md > /dev/null 2>&1
248        RETVAL=$?
249        rm -f ./genmake_cy_md
250        if test "x$RETVAL" = x0 ; then
251            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
252            return 0
253        else
254            echo "WARNING: unable to build cyrus-imapd-makedepend"
255            return 1
256        fi
257    }
258    
259    
260    build_embed_encode()
261    {
262        printf "  building the embed-encode utility...  "
263        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265                echo
266                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267                echo
268                EMBED_SRC=f
269                return 1
270            fi
271            clist="cc gcc c89 $CC"
272            for ic in $clist ; do
273                comm="$ic -o encode_files encode_files.c"
274                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275                RETVAL=$?
276                if test "x$RETVAL" = x0 ; then
277                    echo "OK"
278                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279                    return 0
280                fi
281            done
282            echo
283            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
284            echo "      so it has been disabled"
285            echo
286            EMBED_SRC=f
287            return 1
288        fi
289        echo "OK"
290        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291    }
292    
293    
294  # Guess possible config options for this host  # Guess possible config options for this host
295  find_possible_configs()  {  find_possible_configs()  {
296    
297      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
298      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
299      PLATFORM=`echo $tmp2 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
300        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
301        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
302        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
303        PLATFORM=$tmp3
304        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
305      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
306      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
307            
308      echo "test" > test      echo "test" > test
309      ln -s ./test link      ln -s ./test link
# Line 103  find_possible_configs()  { Line 321  find_possible_configs()  {
321          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
322      fi      fi
323    
324      # look for possible fortran compilers      look_for_makedepend
325      tmp="$MITGCM_FC $FC g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"  
326        #================================================================
327        #  look for possible C compilers
328        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329        p_CC=
330        for c in $tmp ; do
331            rm -f ./genmake_hello.c  ./genmake_hello
332            cat >> genmake_hello.c << EOF
333    #include <stdio.h>
334    int main(int argc, char **argv) {
335      printf("Hello!\n");
336      return 0;
337    }
338    EOF
339            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
340            RETVAL=$?
341            if test "x${RETVAL}" = x0 ; then
342                p_CC="$p_CC $c"
343            fi
344        done
345        rm -f ./genmake_hello.c ./genmake_hello
346        if test "x${p_CC}" = x ; then
347            cat 1>&2 <<EOF
348    
349    Error: No C compilers were found in your path.  Please specify one using:
350    
351        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
352        2) the CC or MITGCM_CC environment variables.
353    
354    EOF
355            exit 1
356        else
357            echo "  The possible C compilers found in your path are:"
358            echo "   "$p_CC
359            if test "x$CC" = x ; then
360                CC=`echo $p_CC | $AWK '{print $1}'`
361                echo "  Setting C compiler to: "$CC
362            fi
363        fi
364    
365        #================================================================
366        #  look for possible FORTRAN compilers
367        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 121  EOF Line 381  EOF
381              p_FC="$p_FC $c"              p_FC="$p_FC $c"
382          fi          fi
383      done      done
384        rm -f ./hello.f ./hello
385      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
386          cat 1>&2 <<EOF          cat 1>&2 <<EOF
387    
# Line 128  Error: No Fortran compilers were found i Line 389  Error: No Fortran compilers were found i
389    
390      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
391      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
392      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
393    
394  EOF  EOF
395          exit 1          exit 1
396      else      else
397          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
398          echo "   "$p_FC          echo "   "$p_FC
         if test "x$FC" = x ; then  
             FC=`echo $p_FC | $AWK '{print $1}'`  
         fi  
399      fi      fi
400    
401      for i in $p_FC ; do      #  Use the first of the compilers found in the current PATH
402          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i      #  that has a correctly-named optfile
403          if test -r $p_OF ; then      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
404              OPTFILE=$p_OF          for i in $p_FC ; do
405              echo "  The options file:  $p_OF"              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
406              echo "    appears to match so we'll use it."              if test -r $OPTFILE ; then
407              break                  echo "  Setting OPTFILE to: "$OPTFILE
408          fi                  break
409      done              fi
410            done
411        fi
412    
413        if test "x$OPTFILE" = x ; then
414            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
415            if test ! -r $OPTFILE ; then
416                 echo "  I looked for the file "$OPTFILE" but did not find it"
417            fi
418        fi
419    #    echo "  The options file:  $p_OF"
420    #    echo "    appears to match so we'll use it."
421    #   for i in $p_FC ; do
422    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
423    #if test -r $p_OF ; then
424    #    OPTFILE=$p_OF
425    #    echo "  The options file:  $p_OF"
426    #    echo "    appears to match so we'll use it."
427    #    break
428    #fi
429    #   done
430      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
431          cat 1>&2 <<EOF          cat 1>&2 <<EOF
432    
# Line 204  get_pdepend_list()  { Line 482  get_pdepend_list()  {
482      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
483          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
484          > ./.pd_tmp          > ./.pd_tmp
485      source ./.pd_tmp      . ./.pd_tmp
486      rm -f ./.pd_tmp      rm -f ./.pd_tmp
487    
488      echo -n "PNAME = "${}      printf "PNAME = "${}
489  }  }
490    
491    
492  #  Explain usage  #  Explain usage
493  usage()  {  usage()  {
494      echo  cat <<EOF
495      echo "Usage: "$0" [OPTIONS]"  
496      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
497      echo    where [OPTIONS] can be:
498      echo "    -help | --help | -h | --h"  
499      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
500      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
501      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
502      echo "    -pdepend NAME | --pdepend NAME"      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
503      echo "      -pdepend=NAME | --pdepend=NAME"        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
504      echo "    -pdefault NAME | --pdefault NAME"            Use "NAME" as the adoptfile.  By default, the file at
505      echo "      -pdefault=NAME | --pdefault=NAME"            "tools/adjoint_options/adjoint_default" will be used.
506      echo "    -make NAME | -m NAME"  
507      echo "      --make=NAME | -m=NAME"      -nooptfile | --nooptfile
508      echo "    -makefile NAME | -mf NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
509      echo "      --makefile=NAME | -mf=NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
510      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"            Use "NAME" as the optfile.  By default, an attempt will be
511      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            made to find an appropriate "standard" optfile in the
512      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"            tools/build_options/ directory.
513      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"  
514      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"      -pdepend NAME | --pdepend NAME
515      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"        -pdepend=NAME | --pdepend=NAME
516      echo "    -disable NAME | --disable NAME"            Get package dependency information from "NAME".
517      echo "      -disable=NAME | --disable=NAME"  
518      echo "    -enable NAME | --enable NAME"      -pdefault NAME | --pdefault NAME
519      echo "      -enable=NAME | --enable=NAME"        -pdefault=NAME | --pdefault=NAME
520      echo "    -standarddirs NAME | --standarddirs NAME"            Get the default package list from "NAME".
521      echo "      -standarddirs=NAME | --standarddirs=NAME"  
522      echo "    -noopt NAME | --noopt NAME"      -make NAME | -m NAME
523      echo "      -noopt=NAME | --noopt=NAME"        --make=NAME | -m=NAME
524  #    echo "    -cpp NAME | --cpp NAME"            Use "NAME" for the MAKE program. The default is "make" but
525  #    echo "      -cpp=NAME | --cpp=NAME"            many platforms, "gmake" is the preferred choice.
526      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"  
527      echo "      -fc=NAME | --fc=NAME"      -makefile NAME | -mf NAME
528      echo "    -[no]ieee | --[no]ieee"        --makefile=NAME | -mf=NAME
529      echo "    -[no]mpi | --[no]mpi"            Call the makefile "NAME".  The default is "Makefile".
530      echo "    -[no]jam | --[no]jam"  
531      echo      -makedepend NAME | -md NAME
532      echo "  and NAME is a string such as:"        --makedepend=NAME | -md=NAME
533      echo            Use "NAME" for the MAKEDEPEND program.
534      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"  
535      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
536      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
537      echo            Specify the location of the MITgcm ROOTDIR as "NAME".
538      echo "  which, depending upon your shell, may need to be single-quoted"            By default, genamke will try to find the location by
539      echo "  if it contains spaces, dashes, or other special characters."            looking in parent directories (up to the 5th parent).
540    
541        -mods NAME | --mods NAME | -mo NAME | --mo NAME
542          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
543              Here, "NAME" specifies a list of directories that are
544              used for additional source code.  Files found in the
545              "mods list" are given preference over files of the same
546              name found elsewhere.
547    
548        -disable NAME | --disable NAME
549          -disable=NAME | --disable=NAME
550              Here "NAME" specifies a list of packages that we don't
551              want to use.  If this violates package dependencies,
552              genamke will exit with an error message.
553    
554        -enable NAME | --enable NAME
555          -enable=NAME | --enable=NAME
556              Here "NAME" specifies a list of packages that we wish
557              to specifically enable.  If this violates package
558              dependencies, genamke will exit with an error message.
559    
560        -standarddirs NAME | --standarddirs NAME
561          -standarddirs=NAME | --standarddirs=NAME
562              Here, "NAME" specifies a list of directories to be
563              used as the "standard" code.
564    
565        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
566          -fc=NAME | --fc=NAME
567              Use "NAME" as the fortran compiler.  By default, genmake
568              will search for a working compiler by trying a list of
569              "usual suspects" such as g77, f77, etc.
570    
571        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
572              Use "NAME" as the C compiler.  By default, genmake
573              will search for a working compiler by trying a list of
574              "usual suspects" such as gcc, c89, cc, etc.
575    
576        -[no]ieee | --[no]ieee
577              Do or don't use IEEE numerics.  Note that this option
578              *only* works if it is supported by the OPTFILE that
579              is being used.
580    
581        -ignoretime | -ignore_time | --ignoretime | --ignore_time
582              Ignore all the "wall clock" routines entirely.  This will
583              not in any way hurt the model results -- it simply means
584              that the code that checks how long the model spends in
585              various routines will give junk values.
586    
587        -ts | --ts
588              Produce timing information per timestep
589        -papis | --papis
590              Produce summary MFlop/s (and IPC) with PAPI per timestep
591        -pcls | --pcls
592              Produce summary MFlop/s etc. with PCL per timestep
593        -foolad | --foolad
594              Fool the AD code generator
595        -papi | --papi
596              Performance analysis with PAPI
597        -pcl | --pcl
598              Performance analysis with PCL
599        -hpmt | --hpmt
600              Performance analysis with the HPM Toolkit
601    
602        -gsl | --gsl
603              Use GSL to control floating point rounding and precision
604        -devel | --devel
605              Add additional warning and debugging flags for development
606    
607        -mpi | --mpi
608              Include MPI header files and link to MPI libraries
609        -mpi=PATH | --mpi=PATH
610              Include MPI header files and link to MPI libraries using MPI_ROOT
611              set to PATH. i.e. Include files from \$PATH/include, link to libraries
612              from \$PATH/lib and use binaries from \$PATH/bin.
613    
614        -es | --es | -embed-source | --embed-source
615              Embed a tarball containing the full source code
616              (including the Makefile, etc.) used to build the
617              executable [off by default]
618    
619        -bash NAME
620              Explicitly specify the Bourne or BASH shell to use
621    
622      While it is most often a single word, the "NAME" variables specified
623      above can in many cases be a space-delimited string such as:
624    
625        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
626        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
627        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
628    
629      which, depending upon your shell, may need to be single-quoted.
630    
631      For more detailed genmake documentation, please see:
632    
633        http://mitgcm.org/devel_HOWTO/
634    
635    EOF
636    
637      exit 1      exit 1
638  }  }
639    
640  #eh3 # This is the generic configuration.  #  Build a CPP macro to automate calling C routines from FORTRAN
641  #eh3 set LN         = ( 'ln -s' )  get_fortran_c_namemangling()  {
642  #eh3 set CPP        = ( '/lib/cpp -P' )  
643  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
644  #eh3 set KPP        = (  )      if test ! "x$FC_NAMEMANGLE" = x ; then
645  #eh3 set FC         = ( 'f77' )          return 0
646  #eh3 set LINK       = $FC      fi
647  #eh3 set MAKEDEPEND = ( 'makedepend' )  
648  #eh3 set INCLUDES   = ( -I. )      default_nm="#define FC_NAMEMANGLE(X) X ## _"
649  #eh3 set FFLAGS     = (  )      
650  #eh3 set FOPTIM     = (  )      cat > genmake_test.c <<EOF
651  #eh3 set CFLAGS     = (  )  void tcall( char * string ) { tsub( string ); }
652  #eh3 set KFLAGS1    = (  )  EOF
653  #eh3 set KFLAGS2    = (  )      $MAKE genmake_test.o >> genmake_warnings 2>&1
654  #eh3 set LIBS       = (  )      RETVAL=$?
655  #eh3 set KPPFILES   = (  )      if test "x$RETVAL" != x0 ; then
656  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )          FC_NAMEMANGLE=$default_nm
657  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )          cat <<EOF>> genmake_errors
658    
659    WARNING: C test compile fails
660    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
661    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
662    EOF
663            return 1
664        fi
665        c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
666        RETVAL=$?
667        if test "x$RETVAL" != x0 ; then
668            FC_NAMEMANGLE=$default_nm
669            cat <<EOF>> genmake_warnings
670    
671    WARNING: The "nm" command failed.
672    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
673    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
674    EOF
675            return 1
676        fi
677        cat > genmake_tcomp.$FS <<EOF
678          subroutine tcall( string )
679          character*(*) string
680          call tsub( string )
681          end
682    EOF
683        $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
684        RETVAL=$?
685        if test "x$RETVAL" != x0 ; then
686            FC_NAMEMANGLE=$default_nm
687            cat <<EOF>> genmake_warnings
688    
689    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
690    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
691    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
692    EOF
693            return 1
694        fi
695        f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
696        RETVAL=$?
697        if test "x$RETVAL" != x0 ; then
698            FC_NAMEMANGLE=$default_nm
699            cat <<EOF>> genmake_warnings
700    
701    WARNING: The "nm" command failed.
702    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
703    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
704    EOF
705            return 1
706        fi
707    
708        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
709        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
710        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
711        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
712    
713        nmangle="X"
714        if test "x$c_a" != "x$f_a" ; then
715            comm="echo x$f_a | sed -e 's|x$c_a||'"
716            a=`eval $comm`
717            nmangle="$a ## $nmangle"
718        fi
719        if test "x$c_b" != "x$f_b" ; then
720            comm="echo x$f_b | sed -e 's|x$c_b||'"
721            b=`eval $comm`
722            nmangle="$nmangle ## $b"
723        fi
724    
725        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
726    
727        #  cleanup the testing files
728        rm -f genmake_tcomp.* genmake_test.*
729    }
730    
731    
732    check_HAVE_CLOC()  {
733        get_fortran_c_namemangling
734        cat <<EOF > genmake_tc_1.c
735    $FC_NAMEMANGLE
736    #include <stdio.h>
737    #include <stdlib.h>
738    #include <unistd.h>
739    #include <assert.h>
740    #include <sys/time.h>
741    void FC_NAMEMANGLE(cloc) ( double *curtim )
742    {
743     struct timeval tv1;
744     gettimeofday(&tv1 , (void *)NULL );
745     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
746     *curtim = *curtim/1.E6;
747    }
748    EOF
749        COMM="$CC $CFLAGS -c genmake_tc_1.c"
750        echo $COMM >> genmake_warnings
751        $COMM >> genmake_warnings 2>&1
752        RET_C=$?
753        cat <<EOF > genmake_tc_2.$FS
754          program hello
755          REAL*8 wtime
756          external cloc
757          call cloc(wtime)
758          print *," HELLO WORLD", wtime
759          end
760    EOF
761        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
762        echo $COMM >> genmake_warnings
763        $COMM >> genmake_warnings 2>&1
764        RET_F=$?
765        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
766        RETVAL=$?
767        if test "x$RETVAL" = x0 ; then
768            HAVE_CLOC=t
769            DEFINES="$DEFINES -DHAVE_CLOC"
770        fi
771        rm -f genmake_tc*
772    }
773    
774    
775    check_HAVE_SIGREG()  {
776        if test ! "x$HAVE_SIGREG" = x ; then
777            return
778        fi
779        get_fortran_c_namemangling
780        cat <<EOF > genmake_tc_1.c
781    $FC_NAMEMANGLE
782    #include <stdlib.h>
783    #include <stdio.h>
784    #include <signal.h>
785    #include <errno.h>
786    #include <ucontext.h>
787    
788    int * ip;
789    
790    static void killhandler(
791        unsigned int sn, siginfo_t  si, struct ucontext *sc )
792    {
793        *ip = *ip + 1;
794        return;
795    }
796    
797    void FC_NAMEMANGLE(sigreg) (int * aip)
798    {
799        struct sigaction s;
800        ip = aip;
801        s.sa_flags = SA_SIGINFO;
802        s.sa_sigaction = (void *)killhandler;
803        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
804            printf("Sigaction returned error = %d\n", errno);
805            exit(0);
806        }
807        return;
808    }
809    EOF
810        COMM="$CC $CFLAGS -c genmake_tc_1.c"
811        echo $COMM >> genmake_warnings
812        $COMM >> genmake_warnings 2>&1
813        RET_C=$?
814        cat <<EOF > genmake_tc_2.$FS
815          program hello
816          integer anint
817          common /iv/ anint
818          external sigreg
819          call sigreg(anint)
820          end
821    EOF
822        echo >> genmake_warnings
823        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
824        cat genmake_tc_2.$FS >> genmake_warnings
825        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
826        echo $COMM >> genmake_warnings
827        $COMM >> genmake_warnings 2>&1
828        RETVAL=$?
829        if test "x$RETVAL" = x0 ; then
830            HAVE_SIGREG=t
831            DEFINES="$DEFINES -DHAVE_SIGREG"
832        fi
833        rm -f genmake_tc*
834    }
835    
836    
837    check_HAVE_SETRLSTK()  {
838        if test "x$HAVE_SETRLSTK" = xt ; then
839            DEFINES="$DEFINES -DHAVE_SETRLSTK"
840            return
841        fi  
842        if test ! "x$HAVE_SETRLSTK" = x ; then
843            return
844        fi
845        get_fortran_c_namemangling
846        cat <<EOF > genmake_tc_1.c
847    $FC_NAMEMANGLE
848    #include <sys/time.h>
849    #include <sys/resource.h>
850    #include <unistd.h>
851    void FC_NAMEMANGLE(setrlstk) ()
852    {
853        struct rlimit rls;
854        rls.rlim_cur = RLIM_INFINITY;
855        rls.rlim_max = RLIM_INFINITY;
856        setrlimit(RLIMIT_STACK, &rls);
857        return;
858    }
859    EOF
860        COMM="$CC $CFLAGS -c genmake_tc_1.c"
861        echo $COMM >> genmake_warnings
862        $COMM >> genmake_warnings 2>&1
863        RET_C=$?
864        cat <<EOF > genmake_tc_2.$FS
865          program hello
866          external setrlstk
867          call setrlstk()
868          end
869    EOF
870        echo >> genmake_warnings
871        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
872        cat genmake_tc_2.$FS >> genmake_warnings
873        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
874        echo $COMM >> genmake_warnings
875        $COMM >> genmake_warnings 2>&1
876        RETVAL=$?
877        if test "x$RETVAL" = x0 ; then
878            HAVE_SETRLSTK=t
879            DEFINES="$DEFINES -DHAVE_SETRLSTK"
880        fi
881        rm -f genmake_tc*
882    }
883    
884    
885    check_HAVE_STAT()  {
886        get_fortran_c_namemangling
887        cat <<EOF > genmake_tc_1.c
888    $FC_NAMEMANGLE
889    #include <stdio.h>
890    #include <stdlib.h>
891    #include <unistd.h>
892    #include <sys/stat.h>
893    #include <sys/types.h>
894    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
895    {
896        char name[512];
897        struct stat astat;
898    
899        name[0] = 'a'; name[1] = '\0';
900        if (! stat(name, &astat))
901            *nbyte = (int)(astat.st_size);
902        else
903            *nbyte = -1;
904    }
905    EOF
906        COMM="$CC $CFLAGS -c genmake_tc_1.c"
907        echo $COMM >> genmake_warnings
908        $COMM >> genmake_tc.log 2>&1
909        RET_C=$?
910        cat <<EOF > genmake_tc_2.$FS
911          program hello
912          integer nbyte
913          call tfsize(nbyte)
914          print *," HELLO WORLD", nbyte
915          end
916    EOF
917        echo >> genmake_warnings
918        echo "running: check_HAVE_STAT()" >> genmake_warnings
919        cat genmake_tc_2.$FS >> genmake_warnings
920        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
921        echo $COMM >> genmake_warnings
922        $COMM >> genmake_tc.log 2>&1
923        RETVAL=$?
924        if test "x$RETVAL" = x0 ; then
925            HAVE_STAT=t
926            DEFINES="$DEFINES -DHAVE_STAT"
927        fi
928        rm -f genmake_tc*
929    }
930    
931    
932    check_netcdf_libs()  {
933        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
934            return
935        fi
936        echo >> genmake_warnings
937        echo "running: check_netcdf_libs()" >> genmake_warnings
938        cat <<EOF > genmake_tnc.F
939          program fgennc
940    #include "netcdf.inc"
941    EOF
942        if test ! "x$MPI" = x ; then
943            echo '#include "mpif.h"' >> genmake_tnc.F
944        fi
945        cat <<EOF >> genmake_tnc.F
946          integer iret, ncid, xid
947          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
948          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
949          iret = nf_def_dim(ncid, 'X', 11, xid)
950          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
951          iret = nf_close(ncid)
952          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
953          end
954    EOF
955        echo "===  genmake_tnc.F  ===" > genmake_tnc.log
956        cat genmake_tnc.F >> genmake_tnc.log
957        echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
958        RET_CPP=f
959        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
960        echo "$COMM" >> genmake_tnc.log
961        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
962        if test "x$RET_CPP" = xf ; then
963            echo "  WARNING: CPP failed to pre-process the netcdf test." \
964                >> genmake_tnc.log
965            echo "    Please check that \$INCLUDES is properly set." \
966                >> genmake_tnc.log
967        fi
968        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
969        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
970        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
971            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
972        RET_COMPILE=$?
973        cat genmake_tnc.log >> genmake_warnings
974    
975        #EH3  Remove test program execution for machines that either disallow
976        #EH3  execution or cannot support it (eg. cross-compilers)
977        #EH3
978        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
979        #EH3 RETVAL=$?
980        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
981    
982        if test "x$RET_COMPILE" = x0 ; then
983            HAVE_NETCDF=t
984        else
985            # try again with "-lnetcdf" added to the libs
986            echo "try again with added '-lnetcdf'" > genmake_tnc.log
987            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
988            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
989            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
990            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
991                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
992                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
993            RET_COMPILE=$?
994            cat genmake_tnc.log >> genmake_warnings
995            if test "x$RET_COMPILE" = x0 ; then
996                LIBS="$LIBS -lnetcdf"
997                HAVE_NETCDF=t
998            else
999            # try again with "-lnetcdff" added to the libs
1000                echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1001                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1002                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1003                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1004                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1005                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1006                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1007                RET_COMPILE=$?
1008                cat genmake_tnc.log >> genmake_warnings
1009                if test "x$RET_COMPILE" = x0 ; then
1010                    LIBS="$LIBS -lnetcdff -lnetcdf"
1011                    HAVE_NETCDF=t
1012                fi
1013            fi
1014        fi
1015        rm -f genmake_tnc*
1016    }
1017    
1018    
1019    
1020    ###############################################################################
1021    #   Sequential part of script starts here
1022    ###############################################################################
1023    
1024  #  Set defaults here  #  Set defaults here
1025  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 288  PLATFORM= Line 1028  PLATFORM=
1028  LN=  LN=
1029  S64=  S64=
1030  KPP=  KPP=
1031  FC=  #FC=
1032    #CC=gcc
1033    #CPP=
1034  LINK=  LINK=
1035  DEFINES="-DWORDLENGTH=4"  DEFINES=
1036  PACKAGES=  PACKAGES=
1037  ENABLE=  ENABLE=
1038  DISABLE=  DISABLE=
1039  MAKEFILE=  # MAKEFILE=
1040  MAKEDEPEND=  # MAKEDEPEND=
1041  PDEPEND=  PDEPEND=
1042  DUMPSTATE=t  DUMPSTATE=t
1043  PDEFAULT=  PDEFAULT=
1044  OPTFILE=  OPTFILE=
1045  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1046  FFLAGS=  FFLAGS=
1047  FOPTIM=  FOPTIM=
1048    FEXTRAFLAGS=
1049  CFLAGS=  CFLAGS=
1050  KFLAGS1=  KFLAGS1=
1051  KFLAGS2=  KFLAGS2=
1052    #LDADD=
1053  LIBS=  LIBS=
1054  KPPFILES=  KPPFILES=
1055  NOOPTFILES=  NOOPTFILES=
1056  NOOPTFLAGS=  NOOPTFLAGS=
1057    MPI=
1058    MPIPATH=
1059    TS=
1060    PAPIS=
1061    PCLS=
1062    FOOLAD=
1063    PAPI=
1064    PCL=
1065    HPMT=
1066    GSL=
1067    DEVEL=
1068    HAVE_TEST_L=
1069    
1070    # DEFINES checked by test compilation or command-line
1071    HAVE_SYSTEM=
1072    HAVE_FDATE=
1073    FC_NAMEMANGLE=
1074    HAVE_CLOC=
1075    # HAVE_SETRLSTK=
1076    HAVE_STAT=
1077    HAVE_NETCDF=
1078    HAVE_ETIME=
1079    IGNORE_TIME=
1080    
1081  MODS=  MODS=
1082  TOOLSDIR=  TOOLSDIR=
1083  SOURCEDIRS=  SOURCEDIRS=
1084  INCLUDEDIRS=  INCLUDEDIRS=
1085  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
1086    
1087    G2ARGS=
1088    BASH=
1089  PWD=`pwd`  PWD=`pwd`
1090  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1091  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1092  THISHOSTNAME=`hostname`  EMBED_SRC=
1093    THISHOST=`hostname`
1094  THISCWD=`pwd`  THISCWD=`pwd`
1095  THISDATE=`date`  THISDATE=`date`
1096    THISUSER=`echo $USER`
1097    THISVER=
1098  MACHINE=`uname -a`  MACHINE=`uname -a`
1099  EXECUTABLE=  EXECUTABLE=
1100  EXEHOOK=  EXEHOOK=
# Line 332  IEEE= Line 1104  IEEE=
1104  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1105      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1106  fi  fi
1107    FS=
1108    FS90=
1109    
1110  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1111  AD_OPTFILE=  AD_OPTFILE=
# Line 348  TAMC_EXTRA= Line 1122  TAMC_EXTRA=
1122    
1123    
1124  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1125  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1126  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"
1127    
1128  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1129  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1130  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1131  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1132  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1133    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
1134    
1135  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1136  gm_s7="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1137  gm_s8="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1138  gm_s9="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA"
1139    
1140  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8 $gm_s9"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
1141    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1142    
1143    cat <<EOF
1144    
1145    GENMAKE :
1146    
1147    A program for GENerating MAKEfiles for the MITgcm project.  For a
1148    quick list of options, use "genmake -h" or for more detail see:
1149    
1150      http://mitgcm.org/devel_HOWTO/
1151    
1152    EOF
1153    
 echo  
1154  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1155  gm_local="genmake_local"  gm_local="genmake_local"
1156  for i in . $MODS ; do  printf "  getting local config information:  "
1157      if test -r $i/$gm_local ; then  if test -f $gm_local ; then
         source $i/$gm_local  
         break  
     fi  
 done  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
1158      echo "using $gm_local"      echo "using $gm_local"
1159      source $gm_local      . $gm_local
1160      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
1161      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
1162  else  else
1163      echo "none found"      echo "none found"
1164  fi  fi
1165    
1166  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1167  #OPTIONS=  #OPTIONS=
1168  #n=0  #n=0
1169  #for i ; do  #for i ; do
# Line 396  fi Line 1175  fi
1175  #done  #done
1176  #parse_options  #parse_options
1177  ac_prev=  ac_prev=
1178  for ac_option ; do  for ac_option in "$@" ; do
1179    
1180        G2ARGS="$G2ARGS \"$ac_option\""
1181    
1182      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1183      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 419  for ac_option ; do Line 1200  for ac_option ; do
1200          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1201              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1202                    
1203          -adoptfile | --adoptfile | -ad | --ad)          -adoptfile | --adoptfile | -adof | --adof)
1204              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1205          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1206              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
# Line 439  for ac_option ; do Line 1220  for ac_option ; do
1220          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1221              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1222                    
1223            -bash | --bash)
1224                ac_prev=BASH ;;
1225            -bash=* | --bash=*)
1226                BASH=$ac_optarg ;;
1227            
1228            -makedepend | --makedepend | -md | --md)
1229                ac_prev=MAKEDEPEND ;;
1230            -makedepend=* | --makedepend=* | -md=* | --md=*)
1231                MAKEDEPEND=$ac_optarg ;;
1232            
1233          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
1234              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1235          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
1236              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1237                    
1238          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1239              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
1240          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
1241              PLATFORM=$ac_optarg ;;              echo
1242                usage
1243                ;;
1244                    
1245          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1246              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 474  for ac_option ; do Line 1267  for ac_option ; do
1267          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
1268              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
1269    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
1270  #           -cpp | --cpp)  #           -cpp | --cpp)
1271  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1272  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1273  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1274                        
1275            -cc | --cc)
1276                ac_prev=CC ;;
1277            -cc=* | --cc=*)
1278                CC=$ac_optarg ;;
1279            
1280          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1281              ac_prev=FC ;;              ac_prev=FC ;;
1282          -fc=* | --fc=*)          -fc=* | --fc=*)
1283              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1284                    
1285            -fs | --fs)
1286                ac_prev=FS ;;
1287            -fs=* | --fs=*)
1288                FS=$ac_optarg ;;
1289            
1290            -fs90 | --fs90)
1291                ac_prev=FS90 ;;
1292            -fs90=* | --fs90=*)
1293                FS90=$ac_optarg ;;
1294            
1295          -ieee | --ieee)          -ieee | --ieee)
1296              IEEE=true ;;              IEEE=true ;;
1297          -noieee | --noieee)          -noieee | --noieee)
1298              IEEE= ;;              IEEE= ;;
1299            
1300            -ts | --ts)
1301                TS=true ;;
1302            -papis | --papis)
1303                PAPIS=true ;;
1304            -pcls | --pcls)
1305                PCLS=true ;;
1306            -foolad | --foolad)
1307                FOOLAD=true ;;
1308            -papi | --papi)
1309                PAPI=true ;;
1310            -pcl | --pcl)
1311                PCL=true ;;
1312            -hpmt | --hpmt)
1313                HPMT=true ;;
1314    
1315            -gsl | --gsl)
1316                GSL=true ;;
1317    
1318            -devel | --devel)
1319                DEVEL=true ;;
1320    
1321          -mpi | --mpi)          -mpi | --mpi)
1322              MPI=true ;;              MPI=true ;;
1323          -nompi | --nompi)          -mpi=* | --mpi=*)
1324              MPI= ;;              MPIPATH=$ac_optarg
1325                MPI=true ;;
1326                    
1327          -jam | --jam)  #       -jam | --jam)
1328              JAM=1 ;;  #           JAM=1 ;;
1329          -nojam | --nojam)  #       -nojam | --nojam)
1330              JAM=0 ;;  #           JAM=0 ;;
1331                    
1332          -ds | --ds)          -ds | --ds)
1333              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 516  for ac_option ; do Line 1341  for ac_option ; do
1341              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1342          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1343              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1344            
1345            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1346                IGNORE_TIME="-DIGNORE_TIME" ;;
1347    
1348            -es | --es | -embed-source | --embed-source)
1349                EMBED_SRC=t ;;
1350    
1351          -*)          -*)
1352              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 531  for ac_option ; do Line 1362  for ac_option ; do
1362            
1363  done  done
1364    
1365    
1366  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1367      echo      echo
1368      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1369      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1370      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1371      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/devel_HOWTO/"
1372      echo      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1373      echo "  for directions on how to setup and use the new \"genmake2\" input"      echo "WARNING: ignore \"./.genmakerc\" and continue."
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
1374      echo      echo
1375  fi  fi
1376    
1377    #  Find the MITgcm ${ROOTDIR}
1378  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1379      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1380        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1381          ROOTDIR=".."          ROOTDIR=".."
1382      else      else
1383          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1384              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1385                  ROOTDIR=$d                  ROOTDIR=$d
1386                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1387                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1388                  break                  break
1389              fi              fi
# Line 568  if test ! -d ${ROOTDIR} ; then Line 1401  if test ! -d ${ROOTDIR} ; then
1401      exit 1      exit 1
1402  fi  fi
1403    
1404    #  Find the MITgcm ${THISVER}
1405    if test -f "${ROOTDIR}/doc/tag-index" ; then
1406        THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`
1407    fi
1408    
1409    if test "x$MAKEFILE" = x ; then
1410        MAKEFILE="Makefile"
1411    fi
1412    
1413  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1414  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1415      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 581  fi Line 1423  fi
1423  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
1424      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1425          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
1426          source "$OPTFILE"          . "$OPTFILE"
1427          RETVAL=$?          RETVAL=$?
1428          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1429              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1430              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1431              exit 1              exit 1
1432          fi          fi
# Line 608  fi Line 1450  fi
1450  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
1451      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1452          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1453          source "$AD_OPTFILE"          . "$AD_OPTFILE"
1454          RETVAL=$?          RETVAL=$?
1455          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1456              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1457              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1458              exit 1              exit 1
1459          fi          fi
# Line 624  if test "x${AD_OPTFILE}" != xNONE ; then Line 1466  if test "x${AD_OPTFILE}" != xNONE ; then
1466      fi      fi
1467  fi  fi
1468    
1469  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  #====================================================================
1470  #  and abort!  #  Set default values if not set by the optfile
1471    #
1472    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1473    #  either set defaults or complain and abort!
1474    if test ! "x$BASH" = x ; then
1475        # add a trailing space so that it works within the Makefile syntax (see below)
1476        BASH="$BASH "
1477    fi
1478  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1479      cat <<EOF 1>&2      cat <<EOF 1>&2
1480    
# Line 636  Error: no Fortran compiler: please speci Line 1485  Error: no Fortran compiler: please speci
1485  EOF  EOF
1486      exit 1      exit 1
1487  fi  fi
1488    if test "x$CC" = x ; then
1489        CC=cc
1490    #     cat <<EOF 1>&2
1491    # Error: no C compiler: please specify using one of the following:
1492    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1493    #   2) the "-cc=XXX" command-line option
1494    #   3) the "./genmake_local" file
1495    # EOF
1496    #     exit 1
1497    fi
1498  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1499      LINK=$FC      LINK=$FC
1500  fi  fi
1501    if test "x$MAKE" = x ; then
1502        MAKE="make"
1503    fi
1504  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1505      CPP="cpp"      CPP=cpp
1506  fi  fi
1507    #EH3 === UGLY ===
1508    #  The following is an ugly little hack to check for $CPP in /lib/ and
1509    #  it should eventually be replaced with a more general function that
1510    #  searches a combo of the user's path and a list of "usual suspects"
1511    #  to find the correct location for binaries such as $CPP.
1512    for i in " " "/lib/" ; do
1513        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1514    done
1515    #EH3 === UGLY ===
1516  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1517  RETVAL=$?  RETVAL=$?
1518  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 651  Error: C pre-processor "$CPP" failed the Line 1522  Error: C pre-processor "$CPP" failed the
1522    
1523    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1524    2) the "./genmake_local" file    2) the "./genmake_local" file
1525      3) with the CPP environment variable
1526    
1527  EOF  EOF
1528      exit 1      exit 1
1529  else  else
1530      rm -f test_cpp      rm -f test_cpp
1531  fi  fi
1532  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
1533      MAKEDEPEND=makedepend  if test "x$LN" = x ; then
1534        LN="ln -s"
1535    fi
1536    echo "test" > genmake_test_ln
1537    $LN genmake_test_ln genmake_tlink
1538    RETVAL=$?
1539    if test "x$RETVAL" != x0 ; then
1540        cat <<EOF 1>&2
1541    
1542    Error: The command "ln -s" failed -- please specify a working soft-link
1543      command in the optfile.
1544    
1545    EOF
1546        exit 1
1547    fi
1548    test -L genmake_tlink > /dev/null 2>&1
1549    RETVAL=$?
1550    if test "x$RETVAL" = x0 ; then
1551        HAVE_TEST_L=t
1552    fi
1553    rm -f genmake_test_ln genmake_tlink
1554    
1555    #  Check for broken *.F/*.f handling and fix if possible
1556    check_for_broken_Ff
1557    
1558    if test ! "x$MPI" = x ; then
1559          echo "  Turning on MPI cpp macros"
1560          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1561    fi
1562    
1563    if test ! "x$TS" = x ; then
1564          echo "  Turning on timing per timestep"
1565          if test ! "x$FOOLAD" = x ; then
1566                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1567          else
1568                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1569          fi
1570          PACKAGES="$PACKAGES showflops"
1571    fi
1572    if test ! "x$PAPIS" = x ; then
1573          echo "  Turning on PAPI flop summary per timestep"
1574          echo "  Please make sure PAPIINC, PAPILIB are defined"
1575          if test ! "x$FOOLAD" = x ; then
1576                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1577          else
1578                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1579          fi
1580          INCLUDES="$INCLUDES $PAPIINC"
1581          LIBS="$LIBS $PAPILIB"
1582          PACKAGES="$PACKAGES showflops"
1583    fi
1584    if test ! "x$PCLS" = x ; then
1585          echo "  Turning on PCL counter summary per timestep"
1586          echo "  Please make sure PCLINC, PCLLIB are defined"
1587          if test ! "x$FOOLAD" = x ; then
1588                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1589          else
1590                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1591          fi
1592          INCLUDES="$INCLUDES $PCLINC"
1593          LIBS="$LIBS $PCLLIB"
1594          PACKAGES="$PACKAGES showflops"
1595    fi
1596    if test ! "x$PAPI" = x ; then
1597          if test ! "x$PAPIS" = x ; then
1598              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1599              echo "  Sticking with PAPI flop summary per timestep!"
1600          else
1601              echo "  Turning on performance analysis with PAPI"
1602              echo "  Please make sure PAPIINC, PAPILIB are defined"
1603              DEFINES="$DEFINES -DUSE_PAPI"
1604              INCLUDES="$INCLUDES $PAPIINC"
1605              LIBS="$LIBS $PAPILIB"
1606          fi
1607    fi
1608    if test ! "x$PCL" = x ; then
1609          if test ! "x$PCLS" = x ; then
1610              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1611              echo "  Sticking with PCL flop summary per timestep!"
1612          else
1613              echo "  Turning on performance analysis with PCL"
1614              echo "  Please make sure PCLINC, PCLLIB are defined"
1615              DEFINES="$DEFINES -DUSE_PCL"
1616              INCLUDES="$INCLUDES $PCLINC"
1617              LIBS="$LIBS $PCLLIB"
1618          fi
1619    fi
1620    if test ! "x$HPMT" = x ; then
1621          if test ! "x$PAPI" = x ; then
1622              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1623              echo "  Sticking with PAPI!"
1624          else if test ! "x$PCL" = x ; then
1625              echo "  PCL and the HPM Toolkit cannot co-exist!"
1626              echo "  Sticking with PCL!"
1627          else
1628              echo "  Turning on performance analysis with the HPM Toolkit"
1629              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1630              DEFINES="$DEFINES -DUSE_LIBHPM"
1631              INCLUDES="$INCLUDES $HPMTINC"
1632              LIBS="$LIBS $HPMTLIB"
1633          fi
1634          fi
1635    fi
1636    if test ! "x$GSL" = x ; then
1637          echo "  Turning on use of GSL to control floating point calculations"
1638          echo "  Please make sure GSLINC, GSLLIB are defined"
1639          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1640          INCLUDES="$INCLUDES $GSLINC"
1641          LIBS="$LIBS $GSLLIB"
1642    fi
1643    
1644    printf "\n===  Checking system libraries  ===\n"
1645    printf "  Do we have the system() command using $FC...  "
1646    cat > genmake_tcomp.$FS <<EOF
1647          program hello
1648          call system('echo hi')
1649          end
1650    EOF
1651    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1652    RETVAL=$?
1653    if test "x$RETVAL" = x0 ; then
1654        HAVE_SYSTEM=t
1655        DEFINES="$DEFINES -DHAVE_SYSTEM"
1656        echo "yes"
1657    else
1658        HAVE_SYSTEM=
1659        echo "no"
1660    fi
1661    rm -f genmake_tcomp*
1662    
1663    printf "  Do we have the fdate() command using $FC...  "
1664    cat > genmake_tcomp.$FS <<EOF
1665          program hello
1666          CHARACTER*(128) string
1667          string = ' '
1668          call fdate( string )
1669          print *, string
1670          end
1671    EOF
1672    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1673    RETVAL=$?
1674    if test "x$RETVAL" = x0 ; then
1675        HAVE_FDATE=t
1676        DEFINES="$DEFINES -DHAVE_FDATE"
1677        echo "yes"
1678    else
1679        HAVE_FDATE=
1680        echo "no"
1681    fi
1682    rm -f genmake_tcomp*
1683    
1684    printf "  Do we have the etime() command using $FC...  "
1685    cat > genmake_tcomp.$FS <<EOF
1686          program hello
1687          REAL*4 ACTUAL, TARRAY(2)
1688          EXTERNAL ETIME
1689          REAL*4 ETIME
1690          actual = etime( tarray )
1691          print *, tarray
1692          end
1693    EOF
1694    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1695    RETVAL=$?
1696    if test "x$RETVAL" = x0 ; then
1697        HAVE_ETIME=t
1698        DEFINES="$DEFINES -DHAVE_ETIME"
1699        echo "yes"
1700    else
1701        HAVE_ETIME=
1702        echo "no"
1703    fi
1704    rm -f genmake_tcomp*
1705    
1706    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1707    check_HAVE_CLOC
1708    if test "x$HAVE_CLOC" != x ; then
1709        echo "yes"
1710    else
1711        echo "no"
1712        if test "x$EMBED_SRC" = xt ; then
1713            echo "    WARNING: you requested file embedding but it has"
1714            echo "      been disabled since C code cannot be called"
1715            EMBED_SRC=
1716        fi
1717    fi
1718    rm -f genmake_t*
1719    
1720    printf "  Can we unlimit the stack size using $FC...  "
1721    check_HAVE_SETRLSTK
1722    if test "x$HAVE_SETRLSTK" = xt ; then
1723        echo "yes"
1724    else
1725        echo "no"
1726    fi
1727    rm -f genmake_t*
1728    
1729    printf "  Can we register a signal handler using $FC...  "
1730    check_HAVE_SIGREG
1731    if test "x$HAVE_SIGREG" = xt ; then
1732        echo "yes"
1733    else
1734        echo "no"
1735    fi
1736    rm -f genmake_t*
1737    
1738    printf "  Can we use stat() through C calls...  "
1739    check_HAVE_STAT
1740    if test "x$HAVE_STAT" != x ; then
1741        echo "yes"
1742    else
1743        echo "no"
1744    fi
1745    rm -f genmake_t*
1746    
1747    printf "  Can we create NetCDF-enabled binaries...  "
1748    check_netcdf_libs
1749    if test "x$HAVE_NETCDF" != x ; then
1750        echo "yes"
1751    else
1752        echo "no"
1753  fi  fi
1754    DEFINES="$DEFINES $IGNORE_TIME"
1755    
1756    if test "x$EMBED_SRC" = xt ; then
1757        build_embed_encode
1758    fi
1759    if test "x$EMBED_SRC" = xt ; then
1760        ENABLE="$ENABLE embed_files"
1761    fi
1762    
1763    
1764  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1765  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1766  for d in $MODS ; do  for d in $MODS ; do
1767      if test ! -d $d ; then      if test ! -d $d ; then
1768          echo          echo
1769          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1770          exit 1          exit 1
1771      else      else
1772          echo -n " $d"          printf " $d"
1773          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1774          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1775      fi      fi
1776  done  done
1777  echo  echo
1778    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1779  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1780      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1781  fi  fi
1782    
1783  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1784      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1785        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1786          EXEDIR=../exe          EXEDIR=../exe
1787      else      else
1788          EXEDIR=.          EXEDIR=.
# Line 699  if test "x${TOOLSDIR}" = x ; then Line 1797  if test "x${TOOLSDIR}" = x ; then
1797      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1798  fi  fi
1799  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1800      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1801      exit 1      exit 1
1802  fi  fi
1803  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1804      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1805        RETVAL=$?
1806        if test "x${RETVAL}" = x0 ; then
1807            S64='$(TOOLSDIR)/set64bitConst.sh'
1808        else
1809            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1810            RETVAL=$?
1811            if test "x${RETVAL}" = x0 ; then
1812                S64='$(TOOLSDIR)/set64bitConst.csh'
1813            else
1814                cat <<EOF
1815    
1816    ERROR: neither of the two default scripts:
1817    
1818        ${TOOLSDIR}/set64bitConst.sh
1819        ${TOOLSDIR}/set64bitConst.csh
1820    
1821      are working so please check paths or specify (with \$S64) a
1822      working version of this script.
1823    
1824    EOF
1825                exit 1
1826            fi
1827        fi
1828  fi  fi
1829    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1830    
1831  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1832    
# Line 713  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 1835  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1835  #  they appear as regular source code  #  they appear as regular source code
1836  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1837      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1838      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
1839      RETVAL=$?      RETVAL=$?
1840      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1841          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1842      else      else
1843          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1844          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1845          exit 1          exit 1
1846      fi      fi
1847  fi  fi
1848    
1849    #same for pkg/exch2 and pkg/regrid
1850    for pdir in exch2 regrid ; do
1851        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1852            echo "  Making source files in pkg/${pdir} from templates"
1853            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1
1854            RETVAL=$?
1855            if test "x${RETVAL}" = x0 ; then
1856                rm -f make_${pdir}.errors
1857            else
1858                echo "Error: problem encountered while building source files in pkg/${pdir}:"
1859                cat make_${pdir}.errors 1>&2
1860                exit 1
1861            fi
1862        fi
1863    done
1864    
1865  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1866  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1867      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 750  if test ! "x${RETVAL}" = x0 ; then Line 1888  if test ! "x${RETVAL}" = x0 ; then
1888      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
1889      exit 1      exit 1
1890  fi  fi
1891  source ./.pd_tmp  . ./.pd_tmp
1892  rm -f ./.pd_tmp  rm -f ./.pd_tmp
1893    
1894  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1895  #  file should eventually be added so that, for convenience, one can  #  file should eventually be added so that, for convenience, one can
1896  #  specify groups of packages using names like "ocean" and "atmosphere".  #  specify groups of packages using names like "ocean" and "atmosphere".
1897  echo  -n "  checking default package list:  "  echo "  checking default package list:  "
1898  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1899      for i in "." $MODS ; do      for i in "." $MODS ; do
1900          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
# Line 769  if test "x${PDEFAULT}" = x ; then Line 1907  if test "x${PDEFAULT}" = x ; then
1907      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1908  fi  fi
1909  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1910      echo "default packages file disabled"      echo "    default packages file disabled"
1911  else  else
1912      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1913          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1914      else      else
1915          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1916          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1917          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1918          RETVAL=$?          RETVAL=$?
1919          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1920              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1921              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1922              exit 1              exit 1
1923          fi          fi
# Line 788  else Line 1925  else
1925              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1926          done          done
1927          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1928          expand_pkg_groups          RET=1
1929            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1930          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1931      fi      fi
1932  fi  fi
1933    
1934  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1935    for i in $PACKAGES ; do
1936        echo $i >> ./.tmp_pack
1937    done
1938    for i in `grep  "-" ./.tmp_pack` ; do
1939        j=`echo $i | sed 's/[-]//'`
1940        DISABLE="$DISABLE $j"
1941    done
1942  pack=  pack=
1943  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1944      addit="t"      addit="t"
# Line 810  PACKAGES="$pack" Line 1955  PACKAGES="$pack"
1955  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1956  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1957  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1958    # Test if each explicitly referenced package exists
1959  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1960      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1961        if test ! -d "$ROOTDIR/pkg/$j" ; then
1962          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1963          exit 1          exit 1
1964      fi      fi
1965      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1966  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1967  PACKAGES=  PACKAGES=
1968  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1969      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1970  done  done
1971    rm -f ./.tmp_pack
1972  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1973    
1974    #  Check for package MNC: if NetCDF is available, then build the MNC
1975    #  template files ; otherwise, delete mnc from the list of packages.
1976    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1977    RETVAL=$?
1978    if test "x$RETVAL" = x0 ; then
1979        if test "x$HAVE_NETCDF" != xt ; then
1980            cat <<EOF
1981    
1982    *********************************************************************
1983    WARNING: the "mnc" package was enabled but tests failed to compile
1984      NetCDF applications.  Please check that:
1985    
1986      1) NetCDF is correctly installed for this compiler and
1987      2) the LIBS variable (within the "optfile") specifies the correct
1988           NetCDF library to link against.
1989    
1990      Due to this failure, the "mnc" package is now DISABLED.
1991    *********************************************************************
1992    
1993    EOF
1994            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
1995            DISABLE="$DISABLE mnc"
1996        else
1997            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
1998            RETVAL=$?
1999            if test "x${RETVAL}" = x0 ; then
2000                rm -f make_mnc.errors
2001            else
2002                echo "Error: problem encountered while building source files in pkg/mnc:"
2003                cat make_mnc.errors 1>&2
2004                exit 1
2005            fi
2006        fi
2007    fi
2008    
2009    #  Check for package PROFILES: if NetCDF is not available,
2010    #  then delete profiles from the list of available packages.
2011    echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1
2012    RETVAL=$?
2013    if test "x$RETVAL" = x0 ; then
2014        if test "x$HAVE_NETCDF" != xt ; then
2015            cat <<EOF
2016    
2017    *********************************************************************
2018    WARNING: the "profiles" package was enabled but tests failed to
2019      compile NetCDF applications.  Please check that:
2020    
2021      1) NetCDF is correctly installed for this compiler and
2022      2) the LIBS variable (within the "optfile") specifies the correct
2023           NetCDF library to link against.
2024    
2025      Due to this failure, the "profiles" package is now DISABLED.
2026    *********************************************************************
2027    
2028    EOF
2029            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2030            DISABLE="$DISABLE profiles"
2031        fi
2032    fi
2033    
2034  echo "  applying package dependency rules"  echo "  applying package dependency rules"
2035  ck=  ck=
2036  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
2037      i=0      i=0
2038      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2039      rtot=$nname      rtot=$nname
2040      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2041    
2042          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2043          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 865  while test "x$ck" != xtt ; do Line 2071  while test "x$ck" != xtt ; do
2071    
2072          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2073          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2074                #echo "   " $pname ": need to add :" $dname
2075              in_dis="f"              in_dis="f"
2076              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2077                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 889  while test "x$ck" != xtt ; do Line 2096  while test "x$ck" != xtt ; do
2096              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2097              exit 1              exit 1
2098          fi          fi
2099          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2100            #i=$(( $i + 1 ))
2101      done      done
2102      ck=$ck"t"      ck=$ck"t"
2103  done  done
# Line 908  for i in $PACKAGES ; do Line 2116  for i in $PACKAGES ; do
2116      fi      fi
2117  done  done
2118    
 #  This is compatible with the old genmake.  The "DISABLE_*" flags  
 #  need to be replaced by the "ALLOW_*" flags set below.  
 #  
 # echo -n "  Setting package-specific CPP flags:  "  
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
2119  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2120  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
 cat <<EOF >$PACKAGES_DOT_H".tmp"  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
   
 C  Packages disabled by genmake:  
 EOF  
2121  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2122  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2123  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2124  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2125  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2126  all_pack=  all_pack=
2127    DISABLED_PACKAGES=
2128  for n in $names ; do  for n in $names ; do
2129      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2130          has_pack="f"          has_pack="f"
# Line 957  for n in $names ; do Line 2135  for n in $names ; do
2135              fi              fi
2136          done          done
2137          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2138              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2139              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
 #           DEFINES="$DEFINES -U$undef"  
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
2140          fi          fi
2141      fi      fi
2142  done  done
2143  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2144  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2145      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2146      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2147  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2148    
2149  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2150      case $i in      case $i in
2151          aim_v23)          aim_v23)
2152              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2153              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
2154              ;;              ;;
2155      esac      esac
2156  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2157    
2158  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
2159    
2160  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
2161  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2162  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2163      STANDARDDIRS="eesupp model"      STANDARDDIRS="eesupp model"
2164  fi  fi
2165  for d in $STANDARDDIRS ; do  if test "x$STANDARDDIRS" != x ; then
2166      adr="$ROOTDIR/$d/src"      for d in $STANDARDDIRS ; do
2167      if test ! -d $adr ; then          adr="$ROOTDIR/$d/src"
2168          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
2169          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2170          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2171      else              exit 1
2172          SOURCEDIRS="$SOURCEDIRS $adr"          else
2173      fi              SOURCEDIRS="$SOURCEDIRS $adr"
2174      adr="$ROOTDIR/$d/inc"          fi
2175      if test ! -d $adr ; then          adr="$ROOTDIR/$d/inc"
2176          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
2177          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2178          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2179      else              exit 1
2180          INCLUDEDIRS="$INCLUDEDIRS $adr"          else
2181      fi              INCLUDEDIRS="$INCLUDEDIRS $adr"
2182  done          fi
2183        done
2184    fi
2185    
2186  echo " Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2187  echo " of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
2188  CPP_OPTIONS=  CPP_OPTIONS=
2189    CPP_EEOPTIONS=
2190  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
2191    names=`ls -1 "$ROOTDIR/pkg"`
2192  for i in $spaths ; do  for i in $spaths ; do
2193      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
2194      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
2195          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2196          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2197          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2198            for n in $names ; do
2199                test_for_package_in_cpp_options $CPP_OPTIONS $n
2200            done
2201        fi
2202        try="$i/CPP_EEOPTIONS.h"
2203        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2204            echo "    found CPP_EEOPTIONS=\"$try\""
2205            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2206    #**** not yet enabled ****
2207    #        test_for_mpi_in_cpp_eeoptions $try
2208    #**** not yet enabled ****
2209            CPP_EEOPTIONS="$try"
2210      fi      fi
2211  done  done
2212  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
2213      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2214      exit 1      exit 1
2215  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
2216    
2217  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2218  #  compiler.  #  compiler.
# Line 1076  for i in $SOURCEDIRS ; do Line 2226  for i in $SOURCEDIRS ; do
2226          cat $i/$j >> ad_files          cat $i/$j >> ad_files
2227      done      done
2228  done  done
2229    if test ! "x"$FS = "x.f" ; then
2230  cat <<EOF > adjoint_sed      cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f
2231  s/call adopen(/call adopen ( mythid,\\      mv -f ad_files_f ad_files
2232       \&           /g  fi
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
2233    
2234  echo  echo
2235  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2236  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2237  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2238      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2239          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2240      fi      fi
2241  done  done
2242    
2243    if test ! "x$DIVA" = x ; then
2244        echo "  Creating the pseudo-MPI include directory"
2245        INCLUDES="-I./mpi_headers $INCLUDES"
2246        rm -rf ./mpi_headers
2247        mkdir -p ./mpi_headers
2248    
2249        if test "x$MPIINCLUDEDIR" = x ; then
2250            if test "x$MPIHOME" = x ; then
2251                MPIHOME='/usr'
2252            fi
2253            MPIINCLUDEDIR='$MPIHOME/include'
2254        fi
2255        
2256        if test -r $MPIINCLUDEDIR/mpif.h ; then
2257            for i in $MPI_HEADER_FILES; do
2258                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2259            done
2260    
2261            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2262        else
2263            echo " We cannot create a copy of mpif.h!"
2264    #       exit -1
2265        fi
2266    fi
2267    
2268  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2269  rm -rf .links.tmp  rm -rf .links.tmp
2270  mkdir .links.tmp  mkdir .links.tmp
2271    touch .links.tmp/foo
2272    if test ! -r ".links.tmp/foo" ; then
2273        echo
2274        echo "ERROR : something is wrong with your directory permissions or"
2275        echo "   your user file-creation mask (\"umask\") since creating a"
2276        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2277        echo "   not working.  Please try setting your umask to something"
2278        echo "   sane such as:"
2279        echo
2280        echo "      umask 0002"
2281        echo
2282        echo "   and please verify that you have the proper permissions for"
2283        echo "   creating sub-directories and then reading files created"
2284        echo "   within them."
2285        echo
2286        exit 1
2287    fi
2288    rm -f .links.tmp/foo
2289  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2290  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2291  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
2292  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
2293  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
2294  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
2295  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
2296  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2297  for d in $alldirs ; do  for d in $alldirs ; do
2298      deplist=      deplist=
# Line 1118  for d in $alldirs ; do Line 2301  for d in $alldirs ; do
2301      for sf in $sfiles ; do      for sf in $sfiles ; do
2302          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2303              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2304                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  ignore_f=f
2305                  touch .links.tmp/$sf                  case $d/$sf in
2306                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2307                  case $extn in                          ignore_f=t
2308                      F)                          ;;
2309                          echo    " \\"  >> srclist.inc                    ./AD_CONFIG.h)
2310                          echo -n " $sf" >> srclist.inc                          ignore_f=t
2311                          ;;                          ;;
2312                      F90)                    ./FC_NAMEMANGLE.h)
2313                          echo    " \\"  >> f90srclist.inc                          ignore_f=t
                         echo -n " $sf" >> f90srclist.inc  
2314                          ;;                          ;;
2315                      c)                    ./BUILD_INFO.h)
2316                          echo    " \\"  >> csrclist.inc                          ignore_f=t
                         echo -n " $sf" >> csrclist.inc  
2317                          ;;                          ;;
2318                      h)                    ./EMBEDDED_FILES.h)
2319                          echo    " \\"  >> hlist.inc                          ignore_f=t
                         echo -n " $sf" >> hlist.inc  
2320                          ;;                          ;;
2321                      flow)                    *)
2322                          echo    " \\"  >> ad_flow_files.inc                          #  For the local directory *ONLY*,
2323                          echo -n " $sf" >> ad_flow_files.inc                          #  ignore all soft-links
2324                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2325                                ignore_f=t
2326                            else
2327                                touch .links.tmp/$sf
2328                                deplist="$deplist $sf"
2329                            fi
2330                          ;;                          ;;
2331                  esac                  esac
2332                    if test "x$ignore_f" = xf ; then
2333                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2334                        case $extn in
2335                            F)
2336                                echo    " \\"  >> srclist.inc
2337                                printf " $sf" >> srclist.inc
2338                                ;;
2339                            F90)
2340                                echo    " \\"  >> f90srclist.inc
2341                                printf " $sf" >> f90srclist.inc
2342                                ;;
2343                            c)
2344                                echo    " \\"  >> csrclist.inc
2345                                printf " $sf" >> csrclist.inc
2346                                ;;
2347                            h)
2348                                echo    " \\"  >> hlist.inc
2349                                printf " $sf" >> hlist.inc
2350                                ;;
2351                            flow)
2352                                echo    " \\"  >> ad_flow_files.inc
2353                                printf " $sf" >> ad_flow_files.inc
2354                                ;;
2355                        esac
2356                    fi
2357              fi              fi
2358          fi          fi
2359      done      done
# Line 1150  for d in $alldirs ; do Line 2361  for d in $alldirs ; do
2361          echo "" >> srclinks.tmp          echo "" >> srclinks.tmp
2362          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2363          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2364          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2365    # This may happen when make thinks that a header file has to be "remade"
2366    # because a module it depends on has changed.  In this case we do nothing.
2367            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2368      fi      fi
2369  done  done
2370  rm -rf .links.tmp  rm -rf .links.tmp
# Line 1160  echo "" >> f90srclist.inc Line 2374  echo "" >> f90srclist.inc
2374  echo "" >> hlist.inc  echo "" >> hlist.inc
2375  echo "" >> ad_flow_files.inc  echo "" >> ad_flow_files.inc
2376    
2377  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2378      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
2379  fi  fi
2380  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1169  echo "#    $MACHINE" >> $MAKEFILE Line 2383  echo "#    $MACHINE" >> $MAKEFILE
2383  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2384  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2385  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2386  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
2387  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2388  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2389    
2390    EXE_AD=$EXECUTABLE"_ad"
2391    EXE_FTL=$EXECUTABLE"_ftl"
2392    EXE_SVD=$EXECUTABLE"_svd"
2393    
2394  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2395    #
2396    # OPTFILE="$OPTFILE"
2397  #  #
2398  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2399  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 1202  TOOLSDIR    = ${TOOLSDIR} Line 2423  TOOLSDIR    = ${TOOLSDIR}
2423    
2424  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2425  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
2426    EXE_AD      = ${EXE_AD}
2427    EXE_FTL     = ${EXE_FTL}
2428    EXE_SVD     = ${EXE_SVD}
2429    
2430    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2431    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2432    
2433    # These files are created by Makefile
2434    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2435  EOF  EOF
2436    
2437  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2438        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2439    else
2440        echo "EMBEDDED_FILES = " >>$MAKEFILE
2441    fi
2442    
2443    #  Note: figure out some way to add Hyades JAM libraries here
2444  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2445  # Unix ln (link)  # Unix ln (link)
2446  LN = ${LN}  LN = ${LN}
# Line 1220  KPP = ${KPP} Line 2454  KPP = ${KPP}
2454  FC = ${FC}  FC = ${FC}
2455  # Fortran compiler  # Fortran compiler
2456  F90C = ${F90C}  F90C = ${F90C}
2457    # C compiler
2458    CC = ${CC}
2459  # Link editor  # Link editor
2460  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2461    
2462  # Defines for CPP  # Defines for CPP
2463  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1231  INCLUDES = ${INCLUDES} Line 2467  INCLUDES = ${INCLUDES}
2467  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2468  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2469  # Optim./debug for FC  # Optim./debug for FC
2470  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2471  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2472  # Optim./debug for FC  # Optim./debug for FC
2473  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
# Line 1242  CFLAGS = ${CFLAGS} Line 2478  CFLAGS = ${CFLAGS}
2478  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2479  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2480  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2481  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2482  # Name of the Mekfile  # Name of the Mekfile
2483  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2484    
# Line 1253  cat csrclist.inc      >> $MAKEFILE Line 2489  cat csrclist.inc      >> $MAKEFILE
2489  cat f90srclist.inc    >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
2490  cat hlist.inc         >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
2491  cat ad_flow_files.inc >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
2492  echo               >> $MAKEFILE  echo >> $MAKEFILE
2493  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
2494  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE
2495  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
2496    echo >> $MAKEFILE
2497    echo '.SUFFIXES:' >> $MAKEFILE
2498    echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE
2499  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
2500  rm -f ad_flow_files.inc  rm -f ad_flow_files.inc
2501    
2502  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2503    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
2504  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2505  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2506            @echo Creating \$@ ...
2507          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2508  depend:  depend:
2509          @make links          @make links
2510          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
2511          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2512            -rm -f makedepend.out
2513    
2514    lib: libmitgcmuv.a
2515    
2516    libmitgcmuv.a: \$(OBJFILES)
2517            ar rcv libmitgcmuv.a \$(OBJFILES)
2518            ar d   libmitgcmuv.a main.o
2519    
2520  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
2521    
2522  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
2523    
# Line 1283  output.txt: \$(EXECUTABLE) Line 2526  output.txt: \$(EXECUTABLE)
2526          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2527    
2528  clean:  clean:
2529          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2530            -rm -rf *.o
2531            -rm -rf *.$FS
2532  Clean:  Clean:
2533          @make clean          @make clean
2534          @make cleanlinks          @make cleanlinks
2535          -rm -f Makefile.bak genmake_state genmake_optfile make.log          -rm -f \$(SPECIAL_FILES)
2536            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
2537            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2538  CLEAN:  CLEAN:
2539          @make Clean          @make Clean
2540          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2541          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2542          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2543          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2544            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2545            -rm -rf mnc_test_*
2546    
2547  Makefile: makefile  #eh3 Makefile: makefile
2548  makefile:  makefile:
2549          ${0} $@          $THIS_SCRIPT $G2ARGS
2550  cleanlinks:  cleanlinks:
2551          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2552    
2553  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are create by make
2554  .F.f:  ${PACKAGES_DOT_H}:
2555            @echo Creating \$@ ...
2556            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2557    AD_CONFIG.h:
2558            @echo Creating \$@ ...
2559            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2560    FC_NAMEMANGLE.h:
2561            @echo Creating \$@ ...
2562            echo "$FC_NAMEMANGLE" > \$@
2563    
2564    BUILD_INFO.h:
2565            @echo Creating \$@ ...
2566    EOF
2567    
2568    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2569    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2570    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2571    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2572    
2573    if test "x$EMBED_SRC" = xt ; then
2574        cat >>$MAKEFILE <<EOF
2575    
2576    decode_files.o : EMBEDDED_FILES.h
2577    
2578    ##  \$(F77FILES)
2579    all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2580            @echo Creating \$@ ...
2581            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2582            -rm -f all_fF.tar.gz
2583            -gzip all_fF.tar
2584    
2585    EMBEDDED_FILES.h : all_fF.tar.gz
2586            @echo Creating \$@ ...
2587            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2588    
2589    EOF
2590    fi
2591    
2592    cat >>$MAKEFILE <<EOF
2593    
2594    # The normal chain of rules is (  .F - .$FS - .o  )
2595    
2596    ## This nullifies any default implicit rules concerning these two file types:
2597    ## %.o : %.F
2598    
2599    .F.$FS:
2600          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2601  .f.o:  .$FS.o:
2602          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2603  .F90.f90:  .F.o:
2604          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2605  .f90.o:  .F90.o:  
2606          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2607  .c.o:  .c.o:
2608          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2609    
2610  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2611  .F.p:  .F.p:
2612          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2613  .p.f:  .p.$FS:
2614          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2615    
2616  #=========================================  #=========================================
# Line 1335  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2629  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2629  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2630  for i in $ad_vars ; do  for i in $ad_vars ; do
2631      name=$i      name=$i
2632      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2633      eval $t1      eval $t1
2634      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2635      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2636  done  done
2637    
2638  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2639  echo >> $MAKEFILE  echo >> $MAKEFILE
2640  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2641  AD_FILES=`cat ad_files`  AD_FILES=`cat ad_files`
2642  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2643      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2644      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2645  done  done
2646  echo >> $MAKEFILE  echo >> $MAKEFILE
2647    rm -f ad_files
2648    
2649  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2650    
2651  ad_input_code.f: \$(F77FILES)  # ... AD ...
2652    adall: \$(EXE_AD)
2653    adtaf: ad_taf_output.$FS
2654    adtamc: ad_tamc_output.$FS
2655    
2656    ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2657            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2658            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2659            -rm -f ad_config.template
2660            @make \$(F77FILES)
2661          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2662          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS
2663    
2664  # ... AD ...  ad_taf_output.$FS: ad_input_code.$FS
2665  ad_taf_output.f: ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2666          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2667          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f  
2668    adtafonly:
2669  ad_taf: ad_taf_output.o \$(OBJFILES)          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2670          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2671    
2672  ad_tamc_output.f: ad_input_code.f  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2673          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2674          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f  
2675    ad_tamc_output.$FS: ad_input_code.$FS
2676            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2677            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2678    
2679  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2680          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2681    
2682    adonlyfwd:
2683            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2684    
2685    adtrick:
2686            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2687    
2688  # ... FLT ...  # ... FTL ...
2689  flt_taf_output.f: ad_input_code.f  ftlall: ftl_taf
2690          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f  ftltaf: ftl_taf_output.$FS
2691          cat ad_input_code_ad.f | sed -f adjoint_sed > flt_taf_output.f  ftltamc: ftl_tamc_output.$FS
2692    
2693    ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2694            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2695            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2696            -rm -f ftl_config.template
2697            @make \$(F77FILES)
2698            @make \$(AD_FLOW_FILES)
2699            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2700    
2701  flt_taf: flt_taf_output.o \$(OBJFILES)  ftl_taf_output.$FS: ftl_input_code.$FS
2702          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) flt_taf_output.o \$(LIBS)          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2703            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2704    
2705  flt_tamc_output.f: ad_input_code.f  ftltafonly:
2706          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2707          cat ad_input_code_ad.f | sed -f adjoint_sed > flt_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2708    
2709  flt_tamc: flt_tamc_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2710          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) flt_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2711    
2712    ftl_tamc_output.$FS: ftl_input_code.$FS
2713            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2714            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2715    
2716  # ... SVD ...  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2717  svd_taf_output.f: ad_input_code.f          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
         \$(TAF) \$(SVD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f  
         cat ad_input_code_ad.f | sed -f adjoint_sed > svd_taf_output.f  
2718    
 svd_taf: svd_taf_output.o \$(OBJFILES)  
         \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) svd_taf_output.o \$(LIBS)  
2719    
2720    # ... SVD ...
2721    svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2722            @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2723            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2724    svdall: svd_touch svd_taf
2725    
2726    svd_taf: \$(OBJFILES)
2727            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2728    
2729            @echo "--->>> Only COMPILE svd code! <<<---"
2730            @echo "--->>> Assumes you previously <<<---"
2731            @echo "--->>> did make svdtaf        <<<---"
2732    
2733    svd_touch:
2734            @echo "--->>> Only COMPILE svd code! <<<---"
2735            @echo "--->>> Assumes you previously <<<---"
2736            @echo "--->>> did make svdtaf        <<<---"
2737            touch ad_taf_output.$FS ftl_taf_output.$FS
2738            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2739            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2740            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2741            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2742            -rm -f ftl_config.template
2743    
2744  #=========================================  #=========================================
2745    
# Line 1413  for i in $KPPFILES ; do Line 2756  for i in $KPPFILES ; do
2756      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2757          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2758      fi      fi
2759      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
2760  done  done
2761    
2762  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1423  for i in $NOOPTFILES ; do Line 2766  for i in $NOOPTFILES ; do
2766      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2767          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2768      fi      fi
2769      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
2770      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
2771  done  done
2772    
# Line 1436  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 2779  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
2779    
2780  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
2781    
2782    # Create special header files
2783    $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
2784    if test ! -f $PACKAGES_DOT_H ; then
2785        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2786    else
2787        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
2788        RETVAL=$?
2789        if test "x$RETVAL" = x0 ; then
2790            rm -f $PACKAGES_DOT_H".tmp"
2791        else
2792            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
2793            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2794        fi
2795    fi
2796    if test ! -f AD_CONFIG.h ; then
2797        $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
2798    fi
2799    
2800    
2801  #  Write the "state" for future records  #  Write the "state" for future records
2802  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
2803      echo -n "" > genmake_state      printf "" > genmake_state
2804      for i in $gm_state ; do      for i in $gm_state ; do
2805          t1="t2=\$$i"          t1="t2=\$$i"
2806          eval $t1          eval $t1

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