/[MITgcm]/MITgcm/tools/genmake2
ViewVC logotype

Diff of /MITgcm/tools/genmake2

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph | View Patch Patch

revision 1.169 by jmc, Fri Feb 15 19:33:34 2008 UTC revision 1.230 by jmc, Sat Jun 23 23:21:43 2012 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
173  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
# Line 56  test_for_string_in_file() { Line 217  test_for_string_in_file() {
217  # the package list.  # the package list.
218  expand_pkg_groups() {  expand_pkg_groups() {
219      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
220      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
221          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
222          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
# Line 67  expand_pkg_groups() { Line 227  expand_pkg_groups() {
227              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
228                  matched=1                  matched=1
229                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
230                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
231                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
232              else              else
233                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
# Line 110  EOF Line 270  EOF
270              check_for_broken_Ff              check_for_broken_Ff
271          else          else
272              cat <<EOF 2>&1              cat <<EOF 2>&1
273  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
274    (fails the "cp" test) and this program cannot find a suitable    (fails the "cp" test) and this program cannot find a suitable
275    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
276    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
277    
278  EOF  EOF
# Line 137  EOF Line 297  EOF
297  .F.$tfs:  .F.$tfs:
298          $LN \$< \$@          $LN \$< \$@
299  EOF  EOF
300      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
301      RETVAL=$?      RETVAL=$?
302      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
303          if test "x$FS" = x ; then          if test "x$FS" = x ; then
# Line 146  EOF Line 306  EOF
306              check_for_broken_Ff              check_for_broken_Ff
307          else          else
308              cat <<EOF 2>&1              cat <<EOF 2>&1
309  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
310    (fails the "make/ln" test) and this program cannot find a suitable    (fails the "make/ln" test) and this program cannot find a suitable
311    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
312    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
313    
314  EOF  EOF
# Line 165  EOF Line 325  EOF
325      return      return
326  }  }
327    
   
328  look_for_makedepend()  {  look_for_makedepend()  {
329    
330      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
# Line 186  look_for_makedepend()  { Line 345  look_for_makedepend()  {
345      #    3) locally build and use the cyrus implementation      #    3) locally build and use the cyrus implementation
346      #    4) fall back to the buggy local xmakedpend script      #    4) fall back to the buggy local xmakedpend script
347      #      #
348        echo >> $LOGFILE
349        echo "running: look_for_makedepend()" >> $LOGFILE
350        if test "x${MAKEDEPEND}" != x ; then
351            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
352            RETVAL=$?
353            if test x"$RETVAL" = x0 ; then
354                build_cyrus_makedepend
355                RETVAL=$?
356                if test "x$RETVAL" != x0 ; then
357                    echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'"
358                    MAKEDEPEND=
359                fi
360            else
361                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
362                RETVAL=$?
363                if test "x$RETVAL" = x0 ; then
364                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
365                fi
366                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
367            fi
368        fi
369      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
370          which makedepend > /dev/null 2>&1          which makedepend > /dev/null 2>&1
371          RV0=$?          RV0=$?
# Line 194  look_for_makedepend()  { Line 374  look_for_makedepend()  {
374          cat <<EOF >> $MAKEFILE          cat <<EOF >> $MAKEFILE
375  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
376  #  #
377  #   Some "makedepend" implementations will die if they cannot  #   Some "makedepend" implementations will die if they cannot
378  #   find a Makefile -- so this file is here to gives them an  #   find a Makefile -- so this file is here to gives them an
379  #   empty one to find and parse.  #   empty one to find and parse.
380  EOF  EOF
381          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
# Line 204  EOF Line 384  EOF
384        stop        stop
385        end        end
386  EOF  EOF
387          makedepend genmake_tc.f > /dev/null 2>&1          makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
388          RV1=$?          RV1=$?
389          test -f $MAKEFILE  &&  rm -f $MAKEFILE          test -f $MAKEFILE  &&  rm -f $MAKEFILE
390          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
391          if test "x${RV0}${RV1}" = x00 ; then          if test "x${RV0}${RV1}" = x00 ; then
392              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
393                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
394          else          else
395              echo "    a system-default makedepend was not found."              echo "    system-default makedepend not found. Try to build cyrus-makedepend"
               
396              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
397              build_cyrus_makedepend              build_cyrus_makedepend
398              RETVAL=$?              RETVAL=$?
399              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" != x0 ; then
400                    echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend"
401                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
402                    echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
403              fi              fi
             rm -f ./genmake_cy_md  
         fi  
     else  
         #  echo "MAKEDEPEND=${MAKEDEPEND}"  
         echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1  
         RETVAL=$?  
         if test x"$RETVAL" = x0 ; then  
             build_cyrus_makedepend  
404          fi          fi
405      fi      fi
406  }  }
407    
   
408  build_cyrus_makedepend()  {  build_cyrus_makedepend()  {
409        echo >> $LOGFILE
410        echo "running: build_cyrus_makedepend()" >> $LOGFILE
411      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
412      (      (
413          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
# Line 249  build_cyrus_makedepend()  { Line 424  build_cyrus_makedepend()  {
424      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
425      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
426          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
427            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
428          return 0          return 0
429      else      else
430          echo "WARNING: unable to build cyrus-imapd-makedepend"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
431          return 1          return 1
432      fi      fi
433  }  }
434    
   
435  build_embed_encode()  build_embed_encode()
436  {  {
437      printf "  building the embed-encode utility...  "      printf "  building the embed-encode utility...  "
# Line 269  build_embed_encode() Line 444  build_embed_encode()
444              return 1              return 1
445          fi          fi
446          clist="cc gcc c89 $CC"          clist="cc gcc c89 $CC"
447          for ic in $clist ; do          for ic in $clist ; do
448              comm="$ic -o encode_files encode_files.c"              comm="$ic -o encode_files encode_files.c"
449              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
450              RETVAL=$?              RETVAL=$?
451              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
452                  echo "OK"                  echo "OK"
                 DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
453                  return 0                  return 0
454              fi              fi
455          done          done
# Line 287  build_embed_encode() Line 461  build_embed_encode()
461          return 1          return 1
462      fi      fi
463      echo "OK"      echo "OK"
     DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
464  }  }
465    
466    #  look for possible C compilers
467  # Guess possible config options for this host  look_for_C_compilers() {
468  find_possible_configs()  {      echo >> $LOGFILE
469        echo "running: look_for_C_compilers()" >> $LOGFILE
470      tmp1=`uname`"_"`uname -m`      rm -f ./genmake_hello.c  ./genmake_hello
471      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat >> genmake_hello.c << EOF
     tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`  
     tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`  
     tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`  
     tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`  
     PLATFORM=$tmp3  
     echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32  
     OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`  
     echo "  The platform appears to be:  $PLATFORM"  
       
     echo "test" > test  
     ln -s ./test link  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         LN="ln -s"  
     else  
         echo "Error: \"ln -s\" does not appear to work on this system!"  
         echo "  For help, please contact <MITgcm-support@mitgcm.org>."  
         exit 1  
     fi  
     rm -f test link  
   
     if test "x$CPP" = x ; then  
         CPP="cpp -traditional -P"  
     fi  
   
     look_for_makedepend  
   
     #================================================================  
     #  look for possible C compilers  
     tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"  
     p_CC=  
     for c in $tmp ; do  
         rm -f ./genmake_hello.c  ./genmake_hello  
         cat >> genmake_hello.c << EOF  
472  #include <stdio.h>  #include <stdio.h>
473  int main(int argc, char **argv) {  int main(int argc, char **argv) {
474    printf("Hello!\n");    printf("Hello!\n");
475    return 0;    return 0;
476  }  }
477  EOF  EOF
478          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
479        p_CC=
480        for c in $tmp ; do
481            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
482            echo $COMM >> $LOGFILE
483            $COMM >> $LOGFILE 2>&1
484          RETVAL=$?          RETVAL=$?
485          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
486                echo " $c test successful" >> $LOGFILE
487              p_CC="$p_CC $c"              p_CC="$p_CC $c"
488          fi          fi
489      done      done
# Line 354  Error: No C compilers were found in your Line 499  Error: No C compilers were found in your
499  EOF  EOF
500          exit 1          exit 1
501      else      else
502          echo "  The possible C compilers found in your path are:"          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
         echo "   "$p_CC  
503          if test "x$CC" = x ; then          if test "x$CC" = x ; then
504              CC=`echo $p_CC | $AWK '{print $1}'`              CC=`echo $p_CC | $AWK '{print $1}'`
505              echo "  Setting C compiler to: "$CC              echo "  Setting C compiler to: "$CC
506          fi          fi
507      fi      fi
508        echo " --> set CC='$CC'" >> $LOGFILE
509    }
510    
511    # Guess possible config options for this host
512    find_possible_optfile()  {
513    
514        echo >> $LOGFILE
515        echo "running: find_possible_optfile()" >> $LOGFILE
516        tmp1=`uname`"_"`uname -m`
517        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
518        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
519        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
520        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
521        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
522        PLATFORM=$tmp3
523        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
524        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
525        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
526    
527      #================================================================      #================================================================
528      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
529      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"      echo "  look for possible FORTRAN compilers" >> $LOGFILE
530        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
531      p_FC=      p_FC=
532      for c in $tmp ; do      rm -f ./genmake_hello.f
533          rm -f ./hello.f ./hello      cat >> genmake_hello.f <<EOF
         cat >> hello.f <<EOF  
534        program hello        program hello
535        do i=1,3        do i=1,3
536          print *, 'hello world : ', i          print *, 'hello world : ', i
537        enddo        enddo
538        end        end
539  EOF  EOF
540          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
541            COMM="$f -o genmake_hello genmake_hello.f"
542            echo $COMM >> $LOGFILE
543            $COMM >> $LOGFILE 2>&1
544          RETVAL=$?          RETVAL=$?
545          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
546              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
547                p_FC="$p_FC $f"
548          fi          fi
549      done      done
550      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
551      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
552          cat 1>&2 <<EOF          cat 1>&2 <<EOF
553    
# Line 394  Error: No Fortran compilers were found i Line 560  Error: No Fortran compilers were found i
560  EOF  EOF
561          exit 1          exit 1
562      else      else
563          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
564      fi      fi
565    
566      #  Use the first of the compilers found in the current PATH      #  Use the first of the compilers found in the current PATH
# Line 404  EOF Line 569  EOF
569          for i in $p_FC ; do          for i in $p_FC ; do
570              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
571              if test -r $OPTFILE ; then              if test -r $OPTFILE ; then
572                  echo "  Setting OPTFILE to: "$OPTFILE                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
573                  break                  break
574              fi              fi
575          done          done
# Line 416  EOF Line 581  EOF
581               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
582          fi          fi
583      fi      fi
584  #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #   for i in $p_FC ; do  
 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
 #if test -r $p_OF ; then  
 #    OPTFILE=$p_OF  
 #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #    break  
 #fi  
 #   done  
585      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
586          cat 1>&2 <<EOF          cat 1>&2 <<EOF
587    
# Line 442  Error: No options file was found in:  $R Line 597  Error: No options file was found in:  $R
597  EOF  EOF
598          exit 1          exit 1
599      fi      fi
600        
601  #     # look for possible MPI libraries  #     # look for possible MPI libraries
602  #     mpi_libs=  #     mpi_libs=
603  #     mpi_fort=`which mpif77 2>/dev/null`  #     mpi_fort=`which mpif77 2>/dev/null`
# Line 461  EOF Line 616  EOF
616  #       if test "x${RETVAL}" = x0 ; then  #       if test "x${RETVAL}" = x0 ; then
617  #           a=`cat out`  #           a=`cat out`
618  #           for i in $a ; do  #           for i in $a ; do
619  #               case $i in  #               case $i in
620  #                   -*)  #                   -*)
621  #                       mpi_libs="$mpi_libs $i" ;;  #                       mpi_libs="$mpi_libs $i" ;;
622  #               esac  #               esac
# Line 471  EOF Line 626  EOF
626  #       fi  #       fi
627  #       rm -f test.f out  #       rm -f test.f out
628  #     fi  #     fi
   
629  }  }
630    
631  #  Parse the package dependency information  #  Parse the package dependency information
# Line 480  get_pdepend_list()  { Line 634  get_pdepend_list()  {
634      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
635      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
636      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
637          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
638          > ./.pd_tmp          > ./.pd_tmp
639        RETVAL=$?
640        if test ! "x${RETVAL}" = x0 ; then
641          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
642          exit 1
643        fi
644      . ./.pd_tmp      . ./.pd_tmp
645      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
     printf "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME  
       -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME  
           Use "NAME" as the adoptfile.  By default, the file at  
           "tools/adjoint_options/adjoint_default" will be used.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -cc NAME | --cc NAME | -cc=NAME | --cc=NAME  
           Use "NAME" as the C compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as gcc, c89, cc, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -ignoretime | -ignore_time | --ignoretime | --ignore_time  
           Ignore all the "wall clock" routines entirely.  This will  
           not in any way hurt the model results -- it simply means  
           that the code that checks how long the model spends in  
           various routines will give junk values.  
   
     -ts | --ts  
           Produce timing information per timestep  
     -papis | --papis  
           Produce summary MFlop/s (and IPC) with PAPI per timestep  
     -pcls | --pcls  
           Produce summary MFlop/s etc. with PCL per timestep  
     -foolad | --foolad  
           Fool the AD code generator  
     -papi | --papi  
           Performance analysis with PAPI  
     -pcl | --pcl  
           Performance analysis with PCL  
     -hpmt | --hpmt  
           Performance analysis with the HPM Toolkit  
   
     -gsl | --gsl  
           Use GSL to control floating point rounding and precision  
     -devel | --devel  
           Add additional warning and debugging flags for development  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from \$PATH/include, link to libraries  
           from \$PATH/lib and use binaries from \$PATH/bin.  
   
     -es | --es | -embed-source | --embed-source  
           Embed a tarball containing the full source code  
           (including the Makefile, etc.) used to build the  
           executable [off by default]  
   
     -bash NAME  
           Explicitly specify the Bourne or BASH shell to use  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/devel_HOWTO/  
   
 EOF  
   
     exit 1  
646  }  }
647    
648  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
# Line 644  get_fortran_c_namemangling()  { Line 652  get_fortran_c_namemangling()  {
652      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
653          return 0          return 0
654      fi      fi
655        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
656    
657      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
658        
659      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
660  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
661  EOF  EOF
662      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
663        echo ' '$COMM >> $LOGFILE
664        $COMM >> $LOGFILE 2>&1
665      RETVAL=$?      RETVAL=$?
666      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
667          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
668          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
669    
670  WARNING: C test compile fails   WARNING: C test compile fails
671  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
672  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
673  EOF  EOF
674          return 1          return 1
675      fi      fi
# Line 666  EOF Line 677  EOF
677      RETVAL=$?      RETVAL=$?
678      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
679          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
680          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
681    
682  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
683  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
684  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
685  EOF  EOF
686          return 1          return 1
687      fi      fi
# Line 680  EOF Line 691  EOF
691        call tsub( string )        call tsub( string )
692        end        end
693  EOF  EOF
694      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
695        echo ' '$COMM >> $LOGFILE
696        $COMM >> $LOGFILE 2>&1
697      RETVAL=$?      RETVAL=$?
698      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
699          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
700          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
701    
702  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
703  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
704  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
705  EOF  EOF
706          return 1          return 1
707      fi      fi
# Line 696  EOF Line 709  EOF
709      RETVAL=$?      RETVAL=$?
710      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
711          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
712          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
713    
714  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
715  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
716  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
717  EOF  EOF
718          return 1          return 1
719      fi      fi
# Line 726  EOF Line 739  EOF
739    
740      #  cleanup the testing files      #  cleanup the testing files
741      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
742    
743        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
744    }
745    
746  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
747        echo >> $LOGFILE
748        echo "running: check_HAVE_CLOC()" >> $LOGFILE
749      get_fortran_c_namemangling      get_fortran_c_namemangling
750      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
751  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 747  void FC_NAMEMANGLE(cloc) ( double *curti Line 763  void FC_NAMEMANGLE(cloc) ( double *curti
763  }  }
764  EOF  EOF
765      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
766      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
767      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
768      RET_C=$?      RET_C=$?
769      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
770        program hello        program hello
# Line 759  EOF Line 775  EOF
775        end        end
776  EOF  EOF
777      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
778      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
779      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
780      RET_F=$?      RET_F=$?
781      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
782      RETVAL=$?      RETVAL=$?
783      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
784          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
785      fi      fi
786      rm -f genmake_tc*      rm -f genmake_tc*
787        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
788  }  }
789    
   
790  check_HAVE_SIGREG()  {  check_HAVE_SIGREG()  {
791      if test ! "x$HAVE_SIGREG" = x ; then      if test ! "x$HAVE_SIGREG" = x ; then
792          return          return
793      fi      fi
794        echo >> $LOGFILE
795        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
796      get_fortran_c_namemangling      get_fortran_c_namemangling
797      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
798  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 808  void FC_NAMEMANGLE(sigreg) (int * aip) Line 825  void FC_NAMEMANGLE(sigreg) (int * aip)
825  }  }
826  EOF  EOF
827      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
828      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
829      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
830      RET_C=$?      RET_C=$?
831      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
832        program hello        program hello
# Line 819  EOF Line 836  EOF
836        call sigreg(anint)        call sigreg(anint)
837        end        end
838  EOF  EOF
839      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SIGREG()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
840      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
841      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
842      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
843      RETVAL=$?      RETVAL=$?
844      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
845          HAVE_SIGREG=t          HAVE_SIGREG=t
         DEFINES="$DEFINES -DHAVE_SIGREG"  
846      fi      fi
847      rm -f genmake_tc*      rm -f genmake_tc*
848        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
849  }  }
850    
   
851  check_HAVE_SETRLSTK()  {  check_HAVE_SETRLSTK()  {
     if test "x$HAVE_SETRLSTK" = xt ; then  
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
         return  
     fi    
852      if test ! "x$HAVE_SETRLSTK" = x ; then      if test ! "x$HAVE_SETRLSTK" = x ; then
853          return          return
854      fi      fi
855        echo >> $LOGFILE
856        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
857      get_fortran_c_namemangling      get_fortran_c_namemangling
858      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
859  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 858  void FC_NAMEMANGLE(setrlstk) () Line 870  void FC_NAMEMANGLE(setrlstk) ()
870  }  }
871  EOF  EOF
872      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
873      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
874      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
875      RET_C=$?      RET_C=$?
876      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
877        program hello        program hello
# Line 867  EOF Line 879  EOF
879        call setrlstk()        call setrlstk()
880        end        end
881  EOF  EOF
882      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
883      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
884      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
885      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
886      RETVAL=$?      RETVAL=$?
887      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
888          HAVE_SETRLSTK=t          HAVE_SETRLSTK=t
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
889      fi      fi
890      rm -f genmake_tc*      rm -f genmake_tc*
891        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
892  }  }
893    
   
894  check_HAVE_STAT()  {  check_HAVE_STAT()  {
895        echo >> $LOGFILE
896        echo "running: check_HAVE_STAT()" >> $LOGFILE
897      get_fortran_c_namemangling      get_fortran_c_namemangling
898      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
899  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 904  void FC_NAMEMANGLE(tfsize) ( int *nbyte Line 915  void FC_NAMEMANGLE(tfsize) ( int *nbyte
915  }  }
916  EOF  EOF
917      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
918      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
919      $COMM >> genmake_tc.log 2>&1      $COMM >> genmake_tc.log 2>&1
920      RET_C=$?      RET_C=$?
921      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
# Line 914  EOF Line 925  EOF
925        print *," HELLO WORLD", nbyte        print *," HELLO WORLD", nbyte
926        end        end
927  EOF  EOF
928      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_STAT()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
929      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
930      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
931      $COMM >> genmake_tc.log 2>&1      $COMM >> genmake_tc.log 2>&1
932      RETVAL=$?      RETVAL=$?
933      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
934          HAVE_STAT=t          HAVE_STAT=t
         DEFINES="$DEFINES -DHAVE_STAT"  
935      fi      fi
936      rm -f genmake_tc*      rm -f genmake_tc*
937        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
938  }  }
939    
   
940  check_netcdf_libs()  {  check_netcdf_libs()  {
941      if test ! "x$SKIP_NETCDF_CHECK" = x ; then      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
942          return          return
943      fi      fi
944      echo >> genmake_warnings      echo >> $LOGFILE
945      echo "running: check_netcdf_libs()" >> genmake_warnings      echo "running: check_netcdf_libs()" >> $LOGFILE
946      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
947        program fgennc        program fgennc
948  #include "netcdf.inc"  #include "netcdf.inc"
# Line 952  EOF Line 960  EOF
960        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
961        end        end
962  EOF  EOF
963      echo "===  genmake_tnc.F  ===" > genmake_tnc.log      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
964      cat genmake_tnc.F >> genmake_tnc.log      cat genmake_tnc.F >> genmake_tnc.log
965      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log      echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
966      RET_CPP=f      RET_CPP=f
967      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
968      echo "$COMM" >> genmake_tnc.log      echo "$COMM" >> genmake_tnc.log
# Line 970  EOF Line 978  EOF
978      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
979          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
980      RET_COMPILE=$?      RET_COMPILE=$?
981      cat genmake_tnc.log >> genmake_warnings      cat genmake_tnc.log >> $LOGFILE
982    
983      #EH3  Remove test program execution for machines that either disallow      #EH3  Remove test program execution for machines that either disallow
984      #EH3  execution or cannot support it (eg. cross-compilers)      #EH3  execution or cannot support it (eg. cross-compilers)
# Line 981  EOF Line 989  EOF
989    
990      if test "x$RET_COMPILE" = x0 ; then      if test "x$RET_COMPILE" = x0 ; then
991          HAVE_NETCDF=t          HAVE_NETCDF=t
992            echo "check_netcdf: successful" >> $LOGFILE
993      else      else
994          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
995          echo "try again with added '-lnetcdf'" > genmake_tnc.log          echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
996          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
997          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
998          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
# Line 991  EOF Line 1000  EOF
1000              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1001              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1002          RET_COMPILE=$?          RET_COMPILE=$?
1003          cat genmake_tnc.log >> genmake_warnings          echo >> $LOGFILE
1004            cat genmake_tnc.log >> $LOGFILE
1005          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
1006              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
1007              HAVE_NETCDF=t              HAVE_NETCDF=t
1008                echo "check_netcdf: successful" >> $LOGFILE
1009          else          else
1010          # try again with "-lnetcdff" added to the libs          # try again with "-lnetcdff" added to the libs
1011              echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log              echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1012              echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log              echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1013              echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log              echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1014              echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log              echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
# Line 1005  EOF Line 1016  EOF
1016                  &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \                  &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1017                  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1                  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1018              RET_COMPILE=$?              RET_COMPILE=$?
1019              cat genmake_tnc.log >> genmake_warnings              echo >> $LOGFILE
1020                cat genmake_tnc.log >> $LOGFILE
1021              if test "x$RET_COMPILE" = x0 ; then              if test "x$RET_COMPILE" = x0 ; then
1022                  LIBS="$LIBS -lnetcdff -lnetcdf"                  LIBS="$LIBS -lnetcdff -lnetcdf"
1023                  HAVE_NETCDF=t                  HAVE_NETCDF=t
1024                    echo "check_netcdf: successful" >> $LOGFILE
1025              fi              fi
1026          fi          fi
1027      fi      fi
1028      rm -f genmake_tnc*      rm -f genmake_tnc*
1029        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1030  }  }
1031    
1032    
   
1033  ###############################################################################  ###############################################################################
1034  #   Sequential part of script starts here  #   Sequential part of script starts here
1035  ###############################################################################  ###############################################################################
# Line 1038  ENABLE= Line 1051  ENABLE=
1051  DISABLE=  DISABLE=
1052  # MAKEFILE=  # MAKEFILE=
1053  # MAKEDEPEND=  # MAKEDEPEND=
1054  PDEPEND=  PKG_DEPEND=
1055  DUMPSTATE=t  PKG_GROUPS=
1056  PDEFAULT=  DUMPSTATE=f
1057  OPTFILE=  OPTFILE=
1058  INCLUDES="-I. $INCLUDES"  INCLUDES="-I. $INCLUDES"
1059  FFLAGS=  FFLAGS=
1060  FOPTIM=  FOPTIM=
1061  FEXTRAFLAGS=  FEXTRAFLAGS=
1062    USE_EXTENDED_SRC=
1063    EXTENDED_SRC_FLAG=
1064    GET_FC_VERSION=
1065  CFLAGS=  CFLAGS=
1066  KFLAGS1=  KFLAGS1=
1067  KFLAGS2=  KFLAGS2=
# Line 1056  NOOPTFILES= Line 1072  NOOPTFILES=
1072  NOOPTFLAGS=  NOOPTFLAGS=
1073  MPI=  MPI=
1074  MPIPATH=  MPIPATH=
1075    OMP=
1076    OMPFLAG=
1077    USE_R4=
1078  TS=  TS=
1079  PAPIS=  PAPIS=
1080  PCLS=  PCLS=
# Line 1099  MACHINE=`uname -a` Line 1118  MACHINE=`uname -a`
1118  EXECUTABLE=  EXECUTABLE=
1119  EXEHOOK=  EXEHOOK=
1120  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1121  IEEE=  IEEE=
1122  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1123      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
# Line 1120  FTL_TAF_FLAGS= Line 1138  FTL_TAF_FLAGS=
1138  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1139  TAMC_EXTRA=  TAMC_EXTRA=
1140    
   
1141  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1142  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS DISABLE ENABLE MAKEFILE MAKEDEPEND PLATFORM"
1143  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CC MPI OMP USE_R4 TS PAPIS PCLS PAPI PCL HPMT IEEE DEVEL GSL FEXTRAFLAGS"
1144    gm_s3="ROOTDIR STANDARDDIRS MODS DUMPSTATE"
1145    
1146  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1147  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"  gm_s4="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM"
1148  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1149  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s6="TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1150  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="PWD THISHOST THISUSER THISDATE THISVER MACHINE"
1151  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s8="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME"
1152    
1153  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1154  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1155  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1156  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA"
1157    
1158  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1159  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1160    
1161  cat <<EOF  cat <<EOF
1162    
1163  GENMAKE :  GENMAKE :
1164    
1165  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1166  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1167    or for more detail see the Developer's HOWTO manual at:
1168    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1169    
1170  EOF  EOF
1171    
1172    LOGFILE="genmake.log"
1173    #- clean-up previous genmake logfiles:
1174    rm -f genmake_state genmake_*optfile $LOGFILE
1175    
1176  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1177  gm_local="genmake_local"  gm_local="genmake_local"
1178  printf "  getting local config information:  "  printf "  getting local config information:  "
# Line 1164  else Line 1186  else
1186  fi  fi
1187    
1188  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1189  #parse_options  #parse_options
1190  ac_prev=  ac_prev=
1191  for ac_option in "$@" ; do  for ac_option in "$@" ; do
# Line 1185  for ac_option in "$@" ; do Line 1198  for ac_option in "$@" ; do
1198          ac_prev=          ac_prev=
1199          continue          continue
1200      fi      fi
1201        
1202      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1203        
1204      case $ac_option in      case $ac_option in
1205                    
1206          -help | --help | -h | --h)          -help | --help | -h | --h)
# Line 1206  for ac_option in "$@" ; do Line 1219  for ac_option in "$@" ; do
1219              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1220                    
1221          -pdepend | --pdepend)          -pdepend | --pdepend)
1222              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1223          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1224              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1225                    
1226          -pdefault | --pdefault)          -pgroups | --pgroups)
1227              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1228          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1229              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1230                    
1231          -make | --make | -m | --m)          -make | --make | -m | --m)
1232              ac_prev=MAKE ;;              ac_prev=MAKE ;;
# Line 1292  for ac_option in "$@" ; do Line 1305  for ac_option in "$@" ; do
1305          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1306              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
1307                    
1308            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1309                USE_R4=true ;;
1310    
1311          -ieee | --ieee)          -ieee | --ieee)
1312              IEEE=true ;;              IEEE=true ;;
1313          -noieee | --noieee)          -noieee | --noieee)
1314              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1315            -devel | --devel)
1316                IEEE=true ; DEVEL=true ;;
1317            -gsl | --gsl)
1318                GSL=true ;;
1319    
1320          -ts | --ts)          -ts | --ts)
1321              TS=true ;;              TS=true ;;
# Line 1312  for ac_option in "$@" ; do Line 1332  for ac_option in "$@" ; do
1332          -hpmt | --hpmt)          -hpmt | --hpmt)
1333              HPMT=true ;;              HPMT=true ;;
1334    
         -gsl | --gsl)  
             GSL=true ;;  
   
         -devel | --devel)  
             DEVEL=true ;;  
   
1335          -mpi | --mpi)          -mpi | --mpi)
1336              MPI=true ;;              MPI=true ;;
1337          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1338              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1339              MPI=true ;;              MPI=true ;;
1340                    
1341  #       -jam | --jam)          -omp | --omp)
1342  #           JAM=1 ;;              OMP=true ;;
1343  #       -nojam | --nojam)          -omp=* | --omp=*)
1344  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1345                OMP=true ;;
1346                    
1347          -ds | --ds)          -ds | --ds)
1348              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1349                    
1350            -extra_flag | --extra_flag)
1351                ac_prev=FEXTRAFLAGS ;;
1352            -extra_flag=* | --extra_flag=*)
1353                FEXTRAFLAGS=$ac_optarg ;;
1354            
1355          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1356              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1357          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 1359  for ac_option in "$@" ; do Line 1379  for ac_option in "$@" ; do
1379              ;;              ;;
1380                    
1381      esac      esac
       
 done  
1382    
1383    done
1384    
1385  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1386      echo      echo
1387      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1388      echo "  file.  This file format is no longer supported.  For directions on"      echo "  file.  This file format is no longer supported.  For directions on"
1389      echo "  how to setup and use the new \"genmake2\" script, please see:"      echo "  how to setup and use the new \"genmake2\" script, please see:"
1390      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1391      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1392      echo "WARNING: ignore \"./.genmakerc\" and continue."      echo "WARNING: ignore \"./.genmakerc\" and continue."
1393      echo      echo
1394  fi  fi
1395    
1396  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
# Line 1383  if test "x${ROOTDIR}" = x ; then Line 1402  if test "x${ROOTDIR}" = x ; then
1402          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1403              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1404                  ROOTDIR=$d                  ROOTDIR=$d
1405                  printf "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1406                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1407                  break                  break
1408              fi              fi
1409          done          done
# Line 1402  if test ! -d ${ROOTDIR} ; then Line 1421  if test ! -d ${ROOTDIR} ; then
1421  fi  fi
1422    
1423  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1424  if test -f "${ROOTDIR}/doc/tag-index" ; then  version_file="${ROOTDIR}/doc/tag-index"
1425      THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`  if test -f $version_file ; then
1426        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1427    #-  remove ./BUILD_INFO.h file if older than version_file
1428        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1429            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1430            rm -f ./BUILD_INFO.h
1431        fi
1432  fi  fi
1433    
1434  if test "x$MAKEFILE" = x ; then  if test "x$MAKEFILE" = x ; then
1435      MAKEFILE="Makefile"      MAKEFILE="Makefile"
1436  fi  fi
1437    
1438  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:"
1439  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1440      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1441          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1442          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1443          find_possible_configs          find_possible_optfile
1444      else      else
1445          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1446      fi      fi
# Line 1430  if test "x$OPTFILE" != xNONE ; then Line 1455  if test "x$OPTFILE" != xNONE ; then
1455              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1456              exit 1              exit 1
1457          fi          fi
1458          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1459              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1460          fi          fi
1461      else      else
# Line 1439  if test "x$OPTFILE" != xNONE ; then Line 1464  if test "x$OPTFILE" != xNONE ; then
1464      fi      fi
1465  fi  fi
1466    
1467  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1468  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1469      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
1470          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
# Line 1457  if test "x${AD_OPTFILE}" != xNONE ; then Line 1482  if test "x${AD_OPTFILE}" != xNONE ; then
1482              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1483              exit 1              exit 1
1484          fi          fi
1485          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1486              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1487          fi          fi
1488      else      else
# Line 1485  Error: no Fortran compiler: please speci Line 1510  Error: no Fortran compiler: please speci
1510  EOF  EOF
1511      exit 1      exit 1
1512  fi  fi
1513    if test "x$GET_FC_VERSION" != x ; then
1514      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1515      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1516      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1517      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1518      if test -s genmake_fc_vers1 ; then
1519        cat genmake_fc_vers1 >> $LOGFILE
1520      else
1521        cat genmake_fc_vers2 >> $LOGFILE
1522      fi
1523      echo "<-- compiler version ----" >> $LOGFILE
1524      rm -f genmake_fc_vers1 genmake_fc_vers2
1525    fi
1526    
1527  if test "x$CC" = x ; then  if test "x$CC" = x ; then
1528      CC=cc      look_for_C_compilers
 #     cat <<EOF 1>&2  
 # Error: no C compiler: please specify using one of the following:  
 #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"  
 #   2) the "-cc=XXX" command-line option  
 #   3) the "./genmake_local" file  
 # EOF  
 #     exit 1  
1529  fi  fi
1530    
1531  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1532      LINK=$FC      LINK=$FC
1533  fi  fi
# Line 1502  if test "x$MAKE" = x ; then Line 1535  if test "x$MAKE" = x ; then
1535      MAKE="make"      MAKE="make"
1536  fi  fi
1537  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1538      CPP=cpp      CPP="cpp -traditional -P"
1539  fi  fi
1540  #EH3 === UGLY ===  #EH3 === UGLY ===
1541  #  The following is an ugly little hack to check for $CPP in /lib/ and  #  The following is an ugly little hack to check for $CPP in /lib/ and
# Line 1529  EOF Line 1562  EOF
1562  else  else
1563      rm -f test_cpp      rm -f test_cpp
1564  fi  fi
1565    
1566  look_for_makedepend  look_for_makedepend
1567    
1568    #  Check that soft-link command is set and usable
1569  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1570      LN="ln -s"      LN="ln -s"
1571  fi  fi
# Line 1539  RETVAL=$? Line 1575  RETVAL=$?
1575  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1576      cat <<EOF 1>&2      cat <<EOF 1>&2
1577    
1578  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1579    command in the optfile.    command in the optfile.
1580    
1581  EOF  EOF
# Line 1559  if test ! "x$MPI" = x ; then Line 1595  if test ! "x$MPI" = x ; then
1595        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1596        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1597  fi  fi
1598    if test ! "x$OMP" = x ; then
1599          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1600          FFLAGS="$FFLAGS $OMPFLAG"
1601          F90FLAGS="$F90FLAGS $OMPFLAG"
1602          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1603    fi
1604    
1605    if test ! "x$USE_R4" = x ; then
1606          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1607          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1608    fi
1609    
1610  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1611        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
# Line 1640  if test ! "x$GSL" = x ; then Line 1687  if test ! "x$GSL" = x ; then
1687        INCLUDES="$INCLUDES $GSLINC"        INCLUDES="$INCLUDES $GSLINC"
1688        LIBS="$LIBS $GSLLIB"        LIBS="$LIBS $GSLLIB"
1689  fi  fi
1690    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1691    if test ! "x$USE_EXTENDED_SRC" = x ; then
1692          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1693          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1694    fi
1695    
1696  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1697  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
# Line 1706  rm -f genmake_tcomp* Line 1758  rm -f genmake_tcomp*
1758  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1759  check_HAVE_CLOC  check_HAVE_CLOC
1760  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1761        DEFINES="$DEFINES -DHAVE_CLOC"
1762      echo "yes"      echo "yes"
1763  else  else
1764      echo "no"      echo "no"
# Line 1720  rm -f genmake_t* Line 1773  rm -f genmake_t*
1773  printf "  Can we unlimit the stack size using $FC...  "  printf "  Can we unlimit the stack size using $FC...  "
1774  check_HAVE_SETRLSTK  check_HAVE_SETRLSTK
1775  if test "x$HAVE_SETRLSTK" = xt ; then  if test "x$HAVE_SETRLSTK" = xt ; then
1776        DEFINES="$DEFINES -DHAVE_SETRLSTK"
1777      echo "yes"      echo "yes"
1778  else  else
1779      echo "no"      echo "no"
# Line 1729  rm -f genmake_t* Line 1783  rm -f genmake_t*
1783  printf "  Can we register a signal handler using $FC...  "  printf "  Can we register a signal handler using $FC...  "
1784  check_HAVE_SIGREG  check_HAVE_SIGREG
1785  if test "x$HAVE_SIGREG" = xt ; then  if test "x$HAVE_SIGREG" = xt ; then
1786        DEFINES="$DEFINES -DHAVE_SIGREG"
1787      echo "yes"      echo "yes"
1788  else  else
1789      echo "no"      echo "no"
# Line 1738  rm -f genmake_t* Line 1793  rm -f genmake_t*
1793  printf "  Can we use stat() through C calls...  "  printf "  Can we use stat() through C calls...  "
1794  check_HAVE_STAT  check_HAVE_STAT
1795  if test "x$HAVE_STAT" != x ; then  if test "x$HAVE_STAT" != x ; then
1796        DEFINES="$DEFINES -DHAVE_STAT"
1797      echo "yes"      echo "yes"
1798  else  else
1799      echo "no"      echo "no"
# Line 1747  rm -f genmake_t* Line 1803  rm -f genmake_t*
1803  printf "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
1804  check_netcdf_libs  check_netcdf_libs
1805  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
1806        DEFINES="$DEFINES -DHAVE_NETCDF"
1807      echo "yes"      echo "yes"
1808  else  else
1809      echo "no"      echo "no"
# Line 1758  if test "x$EMBED_SRC" = xt ; then Line 1815  if test "x$EMBED_SRC" = xt ; then
1815  fi  fi
1816  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
1817      ENABLE="$ENABLE embed_files"      ENABLE="$ENABLE embed_files"
1818    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
1819  fi  fi
1820    
   
1821  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1822  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1823  for d in $MODS ; do  for d in $MODS ; do
1824      if test ! -d $d ; then      if test ! -d $d ; then
1825          echo          echo
1826          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1827          exit 1          exit 1
1828      else      else
1829          printf " $d"          printf "$d "
1830          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1831          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1832      fi      fi
1833  done  done
1834  echo  echo
1835    
1836  if test "x${PLATFORM}" = x ; then  #if test "x${PLATFORM}" = x ; then
1837      PLATFORM=$p_PLATFORM  #    PLATFORM=$p_PLATFORM
1838  fi  #fi
1839    
1840  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1841      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
# Line 1818  ERROR: neither of the two default script Line 1875  ERROR: neither of the two default script
1875      ${TOOLSDIR}/set64bitConst.sh      ${TOOLSDIR}/set64bitConst.sh
1876      ${TOOLSDIR}/set64bitConst.csh      ${TOOLSDIR}/set64bitConst.csh
1877    
1878    are working so please check paths or specify (with \$S64) a    are working so please check paths or specify (with \$S64) a
1879    working version of this script.    working version of this script.
1880    
1881  EOF  EOF
# Line 1830  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD Line 1887  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD
1887    
1888  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1889    
1890    #  Set Standard Code Directories:
1891    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1892        STANDARDDIRS="eesupp model"
1893    fi
1894    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
1895    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
1896    ckM=$?
1897    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
1898    ckE=$?
1899    if test $ckM = 0 -a $ckE = 1 ; then
1900        STANDARDDIRS="$STANDARDDIRS eesupp"
1901    fi
1902    
1903  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
1904  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
1905  #  they appear as regular source code  #  they appear as regular source code
1906  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1907      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1908      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
1909        ) > make_eesupp.errors 2>&1
1910      RETVAL=$?      RETVAL=$?
1911      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1912          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 1850  fi Line 1921  fi
1921  for pdir in exch2 regrid ; do  for pdir in exch2 regrid ; do
1922      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1923          echo "  Making source files in pkg/${pdir} from templates"          echo "  Making source files in pkg/${pdir} from templates"
1924          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
1925            ) > make_${pdir}.errors 2>&1
1926          RETVAL=$?          RETVAL=$?
1927          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
1928              rm -f make_${pdir}.errors              rm -f make_${pdir}.errors
# Line 1863  for pdir in exch2 regrid ; do Line 1935  for pdir in exch2 regrid ; do
1935  done  done
1936    
1937  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1938  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
1939      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
1940      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
1941          PDEPEND=$tmp  fi
1942      else  if  test "x${PKG_DEPEND}" = x ; then
1943          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
1944          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
1945  else  else
1946      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
1947          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
1948          exit 1          exit 1
1949      fi      fi
1950        echo "  getting package dependency info from  $PKG_DEPEND"
1951    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
1952        get_pdepend_list $PKG_DEPEND
1953  fi  fi
1954  echo "  getting package dependency info from  $PDEPEND"  
1955  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
1956  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
1957  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
1958      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
1959      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
1960  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
1961  if test ! "x${RETVAL}" = x0 ; then  fi
1962      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
1963      exit 1          echo "Warning:  No package groups information was specified."
1964            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
1965    else
1966        if test ! -r ${PKG_GROUPS} ; then
1967            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
1968            exit 1
1969        fi
1970        echo "  getting package groups info from      $PKG_GROUPS"
1971  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
1972    
1973  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
1974  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
1975  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
1976  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
1977      for i in "." $MODS ; do      for i in "." $MODS ; do
1978          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
1979                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
1980                  break                  break
1981          fi          fi
1982      done      done
1983  fi  fi
1984  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
1985      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
1986  fi      if test "x${PKG_GROUPS}" = x ; then
1987  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
1988      echo "    default packages file disabled"          exit 1
1989        fi
1990  else  else
1991      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
1992          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
1993            exit 1
1994      else      else
1995          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
1996          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1997          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1998          RETVAL=$?          RETVAL=$?
1999          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2000              printf "Error: can't parse default package list "              printf "Error: can't parse package list "
2001              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2002              exit 1              exit 1
2003          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         RET=1  
         while test $RET = 1 ; do expand_pkg_groups; RET=$?; done  
         echo "    after group expansion packages are:  $PACKAGES"  
2004      fi      fi
2005  fi  fi
2006    for i in $pkg_list ; do
2007        PACKAGES="$PACKAGES $i"
2008    done
2009    echo     "    before group expansion packages are:$PACKAGES"
2010    if test "x${PKG_GROUPS}" != x ; then
2011        RET=1
2012        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2013        echo "    after group expansion packages are: $PACKAGES"
2014    fi
2015    
2016  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2017    echo "" > ./.tmp_pack
2018  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2019      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2020  done  done
# Line 1959  PACKAGES="$PACKAGES $ENABLE" Line 2042  PACKAGES="$PACKAGES $ENABLE"
2042  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2043      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2044      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2045          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2046          exit 1          exit 1
2047      fi      fi
2048      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
# Line 1969  for i in `grep -v "-" ./.tmp_pack | sort Line 2052  for i in `grep -v "-" ./.tmp_pack | sort
2052      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2053  done  done
2054  rm -f ./.tmp_pack  rm -f ./.tmp_pack
2055  echo "    packages are:  $PACKAGES"  echo "    packages are: $PACKAGES"
2056    
2057  #  Check for package MNC: if NetCDF is available, then build the MNC  #  Check for package MNC: if NetCDF is available, then build the MNC
2058  #  template files ; otherwise, delete mnc from the list of packages.  #  template files ; otherwise, delete mnc from the list of packages.
2059  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2060  RETVAL=$?  mnc_in=$?
2061  if test "x$RETVAL" = x0 ; then  if test "x$HAVE_NETCDF" != xt ; then
2062      if test "x$HAVE_NETCDF" != xt ; then      if test "x$mnc_in" = x0 ; then
2063          cat <<EOF          cat <<EOF
   
2064  *********************************************************************  *********************************************************************
2065  WARNING: the "mnc" package was enabled but tests failed to compile  WARNING: the "mnc" package was enabled but tests failed to compile
2066    NetCDF applications.  Please check that:    NetCDF applications.  Please check that:
2067    
2068    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2069    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2070         NetCDF library to link against.         NetCDF library to link against.
2071    
2072    Due to this failure, the "mnc" package is now DISABLED.    Due to this failure, the "mnc" package is now DISABLED.
2073  *********************************************************************  *********************************************************************
   
2074  EOF  EOF
2075          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2076          DISABLE="$DISABLE mnc"          DISABLE="$DISABLE mnc"
2077      else      else
2078          ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1      #  this prevent to add mnc (due to pdepend rules) if not available
2079          RETVAL=$?          DISABLE="$DISABLE mnc"
2080          if test "x${RETVAL}" = x0 ; then      fi
2081              rm -f make_mnc.errors  else
2082        # we have NetCDF, we try to build MNC template files
2083        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2084        RETVAL=$?
2085        if test "x${RETVAL}" = x0 ; then
2086            rm -f make_mnc.errors
2087        else
2088            echo "Error: problem encountered while building source files in pkg/mnc:"
2089            cat make_mnc.errors 1>&2
2090            if test "x$mnc_in" = x0 ; then
2091                exit 1
2092          else          else
2093              echo "Error: problem encountered while building source files in pkg/mnc:"              DISABLE="$DISABLE mnc"
             cat make_mnc.errors 1>&2  
             exit 1  
2094          fi          fi
2095      fi      fi
2096  fi  fi
2097    
2098  #  Check for package PROFILES: if NetCDF is not available,  #  Check for package PROFILES: if NetCDF is not available,
2099  #  then delete profiles from the list of available packages.  #  then delete profiles from the list of available packages.
2100  echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1  if test "x$HAVE_NETCDF" != xt ; then
2101  RETVAL=$?      echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2102  if test "x$RETVAL" = x0 ; then      RETVAL=$?
2103      if test "x$HAVE_NETCDF" != xt ; then      if test "x$RETVAL" = x0 ; then
2104          cat <<EOF          cat <<EOF
   
2105  *********************************************************************  *********************************************************************
2106  WARNING: the "profiles" package was enabled but tests failed to  WARNING: the "profiles" package was enabled but tests failed to
2107    compile NetCDF applications.  Please check that:    compile NetCDF applications.  Please check that:
2108    
2109    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2110    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2111         NetCDF library to link against.         NetCDF library to link against.
2112    
2113    Due to this failure, the "profiles" package is now DISABLED.    Due to this failure, the "profiles" package is now DISABLED.
2114  *********************************************************************  *********************************************************************
   
2115  EOF  EOF
2116          PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2117          DISABLE="$DISABLE profiles"          DISABLE="$DISABLE profiles"
2118        else
2119        #  this prevent to add profiles (due to pdepend rules) if not available
2120            DISABLE="$DISABLE profiles"
2121      fi      fi
2122  fi  fi
2123    
2124  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2125  ck=    echo "  applying package dependency rules"
2126  while test "x$ck" != xtt ; do    ck=
2127      while test "x$ck" != xtt ; do
2128      i=0      i=0
2129      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2130      rtot=$nname      rtot=$nname
# Line 2049  while test "x$ck" != xtt ; do Line 2140  while test "x$ck" != xtt ; do
2140                  pin="t"                  pin="t"
2141              fi              fi
2142          done          done
2143            #  or in the current $STANDARDDIRS list?
2144            for p in $STANDARDDIRS ; do
2145                if test "x$p" = "x$pname" ; then pin="t" ; fi
2146            done
2147    
2148          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2149          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 2092  while test "x$ck" != xtt ; do Line 2187  while test "x$ck" != xtt ; do
2187          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2188          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2189              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2190              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2191              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2192              exit 1              exit 1
2193          fi          fi
# Line 2100  while test "x$ck" != xtt ; do Line 2195  while test "x$ck" != xtt ; do
2195          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2196      done      done
2197      ck=$ck"t"      ck=$ck"t"
2198  done    done
2199  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2200    fi
2201  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2202      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2203      if test -d $adr ; then      if test -d $adr ; then
# Line 2118  done Line 2214  done
2214    
2215  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2216  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2217  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2218  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2219  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2220  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2221  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 2147  for i in $PACKAGES ; do Line 2243  for i in $PACKAGES ; do
2243  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2244    
2245  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2246      case $i in      case $i in
2247          aim_v23)          aim_v23)
2248              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2249              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
# Line 2157  for i in $PACKAGES ; do Line 2253  for i in $PACKAGES ; do
2253    
2254  done  done
2255    
2256  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2257  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2258  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2259      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2260          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 2216  fi Line 2309  fi
2309    
2310  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2311  #  compiler.  #  compiler.
2312  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2313      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2314  fi  fi
2315  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2316    touch adSrcFiles.tmp
2317  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2318      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2319      for j in $list_files ; do      for j in $list_files ; do
2320          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2321      done      done
2322  done  done
2323  if test ! "x"$FS = "x.f" ; then  if test ! "x"$FS = "x.f" ; then
2324      cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f      cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2325      mv -f ad_files_f ad_files      mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2326  fi  fi
2327    
2328  echo  echo
# Line 2252  if test ! "x$DIVA" = x ; then Line 2346  if test ! "x$DIVA" = x ; then
2346          fi          fi
2347          MPIINCLUDEDIR='$MPIHOME/include'          MPIINCLUDEDIR='$MPIHOME/include'
2348      fi      fi
2349        
2350      if test -r $MPIINCLUDEDIR/mpif.h ; then      if test -r $MPIINCLUDEDIR/mpif.h ; then
2351          for i in $MPI_HEADER_FILES; do          for i in $MPI_HEADER_FILES; do
2352              cp -p $MPIINCLUDEDIR/$i ./mpi_headers              cp -p $MPIINCLUDEDIR/$i ./mpi_headers
# Line 2286  if test ! -r ".links.tmp/foo" ; then Line 2380  if test ! -r ".links.tmp/foo" ; then
2380      exit 1      exit 1
2381  fi  fi
2382  rm -f .links.tmp/foo  rm -f .links.tmp/foo
2383    
2384    if test "x$OPENAD" != x ; then
2385        OAD_DONT_COMPILE="/dev/null"
2386        OAD_DONT_TRANSFORM="/dev/null"
2387        OAD_KEEP_ORIGINAL="/dev/null"
2388        OAD_CB2M_FILES="/dev/null"
2389        echo "  looking for dontCompile file:  "
2390        for i in "." $MODS ; do
2391            if test -r $i"/dontCompile" ; then
2392                OAD_DONT_COMPILE=$i"/dontCompile"
2393                echo "     found $OAD_DONT_COMPILE"
2394                break
2395            fi
2396        done
2397        echo "  looking for dontTransform file:  "
2398        for i in "." $MODS ; do
2399            if test -r $i"/dontTransform" ; then
2400                OAD_DONT_TRANSFORM=$i"/dontTransform"
2401                echo "     found $OAD_DONT_TRANSFORM"
2402                break
2403            fi
2404        done
2405        echo "  looking for keepOriginal file:  "
2406        for i in "." $MODS ; do
2407            if test -r $i"/keepOriginal" ; then
2408                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2409                echo "     found $OAD_KEEP_ORIGINAL"
2410                break
2411            fi
2412        done
2413        echo "  looking for cb2mFiles:  "
2414        for i in "." $MODS ; do
2415            if test -r $i"/cb2mFiles" ; then
2416                OAD_CB2M_FILES=$i"/cb2mFiles"
2417                echo "     found $OAD_CB2M_FILES"
2418                break
2419            fi
2420        done
2421        echo "   OpenAD exceptions:  "
2422    fi
2423    
2424  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2425  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2426  printf 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2427  printf 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2428  printf 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2429  printf 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2430  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2431    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2432  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2433  for d in $alldirs ; do  for d in $alldirs ; do
2434      deplist=      deplist=
2435      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2436      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2437        if test "x$OPENAD" != x ; then
2438            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2439        fi
2440      for sf in $sfiles ; do      for sf in $sfiles ; do
2441          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2442              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
# Line 2332  for d in $alldirs ; do Line 2471  for d in $alldirs ; do
2471                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2472                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2473                      case $extn in                      case $extn in
2474                          F)                        F)
2475                              echo    " \\"  >> srclist.inc                          echo    " \\"  >> F77srclist.tmp
2476                              printf " $sf" >> srclist.inc                          printf " $sf" >> F77srclist.tmp
2477                              ;;                          if test "x$OPENAD" != x ; then
2478                          F90)                              basename=${sf%%.F}
2479                              echo    " \\"  >> f90srclist.inc                              isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2480                              printf " $sf" >> f90srclist.inc                              if test -z "$isAD" ; then
2481                              ;;                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2482                          c)                                  if test -z "$toBeIgnored" ; then
2483                              echo    " \\"  >> csrclist.inc                                      echo    " \\"  >> nonADF77srclist.tmp
2484                              printf " $sf" >> csrclist.inc                                      printf " $sf" >> nonADF77srclist.tmp
2485                              ;;                                  else
2486                          h)                                      echo "    not to be compiled   :  $sf"
2487                              echo    " \\"  >> hlist.inc                                  fi
2488                              printf " $sf" >> hlist.inc                              else # file is initially listed as an AD file we want to exclude it
2489                              ;;                                   # or we want to retain the untransformed version
2490                          flow)                                  notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2491                              echo    " \\"  >> ad_flow_files.inc                                  untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2492                              printf " $sf" >> ad_flow_files.inc                                  if test -n "$notToBeTransformed"; then
2493                              ;;                                      echo "    not to be transformed:  $sf"
2494                      esac                                  fi
2495                  fi                                  if test -n "$untransformedVersionToBeKept" ; then
2496                                        echo "    original to be kept  :  $sf"
2497                                    fi
2498                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2499                                        echo    " \\"  >> nonADF77srclist.tmp
2500                                        printf " $sf" >> nonADF77srclist.tmp
2501                                    fi
2502                                fi
2503                            fi
2504                            ;;
2505                        F90)
2506                            echo    " \\"  >> F90srclist.tmp
2507                            printf " $sf" >> F90srclist.tmp
2508                            ;;
2509                        c)
2510                            echo    " \\"  >> csrclist.tmp
2511                            printf " $sf" >> csrclist.tmp
2512                            ;;
2513                        h)
2514                            echo    " \\"  >> hsrclist.tmp
2515                            printf " $sf" >> hsrclist.tmp
2516                            ;;
2517                        flow)
2518                            echo    " \\"  >> ad_flow_files.tmp
2519                            printf " $sf" >> ad_flow_files.tmp
2520                            ;;
2521                       esac
2522                    fi
2523              fi              fi
2524          fi          fi
2525      done      done
2526      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2527          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2528            echo "" >> srclinks.tmp
2529          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2530          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2531          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2532    # This may happen when make thinks that a header file has to be "remade"
2533    # because a module it depends on has changed.  In this case we do nothing.
2534            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2535          fi
2536      fi      fi
2537  done  done
2538  rm -rf .links.tmp  rm -rf .links.tmp
2539  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2540  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2541  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2542  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2543  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2544    echo "" >> ad_flow_files.tmp
2545    
2546    CMDLINE=$0
2547    for xx in "$@" ; do nw=`echo $xx | wc -w`
2548        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2549                            else CMDLINE="$CMDLINE '$xx'" ; fi
2550    done
2551    
2552  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2553      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2554  fi  fi
2555  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2556  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 2380  echo "#    $MACHINE" >> $MAKEFILE Line 2558  echo "#    $MACHINE" >> $MAKEFILE
2558  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2559  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2560  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2561  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2562  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2563  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2564    
# Line 2391  EXE_SVD=$EXECUTABLE"_svd" Line 2569  EXE_SVD=$EXECUTABLE"_svd"
2569  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2570  #  #
2571  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2572  #  #
2573  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2574  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2575  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 2411  cat >>$MAKEFILE <<EOF Line 2589  cat >>$MAKEFILE <<EOF
2589  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2590    
2591  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2592  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2593  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2594  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2595  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
# Line 2437  else Line 2615  else
2615      echo "EMBEDDED_FILES = " >>$MAKEFILE      echo "EMBEDDED_FILES = " >>$MAKEFILE
2616  fi  fi
2617    
 #  Note: figure out some way to add Hyades JAM libraries here  
2618  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2619  # Unix ln (link)  # Unix ln (link)
2620  LN = ${LN}  LN = ${LN}
# Line 2469  FOPTIM = ${FOPTIM} Line 2646  FOPTIM = ${FOPTIM}
2646  # Optim./debug for FC  # Optim./debug for FC
2647  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2648  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2649    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2650  # Flags for CC  # Flags for CC
2651  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2652  # Files that should not be optimized  # Files that should not be optimized
# Line 2476  NOOPTFILES = ${NOOPTFILES} Line 2654  NOOPTFILES = ${NOOPTFILES}
2654  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2655  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2656  LIBS = ${LIBS}  LIBS = ${LIBS}
2657  # Name of the Mekfile  # Name of the makefile
2658  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2659    
2660  EOF  EOF
2661    
2662  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2663  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2664  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2665  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2666  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2667    cat ad_flow_files.tmp   >> $MAKEFILE
2668    
2669    rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2670    
2671  echo >> $MAKEFILE  echo >> $MAKEFILE
2672  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  
2673  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE  # add definitions for preprocessed sources
2674  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  # and note that not all systems allow case sensitive extensions
2675    # hence the $FS and $FS90 here.
2676    # for fixed format f90 files we use ff90 or FF90 resp
2677    # but these are not expected to be the original source files
2678    
2679    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2680    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2681    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2682    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2683  echo >> $MAKEFILE  echo >> $MAKEFILE
2684  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2685  echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
 rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
 rm -f ad_flow_files.inc  
2686    
2687  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2688    
2689  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2690  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2691          @echo Creating \$@ ...          @echo Creating \$@ ...
2692          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2693    
2694  depend:  depend:
2695          @make links          @make -f \$(MAKEFILE) links
2696          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2697          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2698          -rm -f makedepend.out          -rm -f makedepend.out
2699    
# Line 2514  libmitgcmuv.a: \$(OBJFILES) Line 2703  libmitgcmuv.a: \$(OBJFILES)
2703          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
2704          ar d   libmitgcmuv.a main.o          ar d   libmitgcmuv.a main.o
2705    
2706  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  obj: \$(OBJFILES)
2707    
2708  small_f: \$(F77FILES) \$(F90FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2709    
2710    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2711    
2712  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2713          @printf 'running ... '          @printf 'running ... '
2714          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2715    
2716    # remove most of the files that "make" generates
2717  clean:  clean:
2718          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2719          -rm -rf *.o          -rm -rf *.o
2720          -rm -rf *.$FS          -rm -rf *.$FS *.flowdir
2721            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2722    
2723    # remove most of the files that "make" and "make depend" generate
2724  Clean:  Clean:
2725          @make clean          @make -f \$(MAKEFILE) clean
2726          @make cleanlinks          @make -f \$(MAKEFILE) cleanlinks
2727          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
         -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak  
2728          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2729            -rm -f genmake_warnings genmake_errors make.log
2730    
2731    # remove also the executable, files that "genmake2" generates (except Makefile)
2732    #         and output from a run (plus log files from testreport)
2733  CLEAN:  CLEAN:
2734          @make Clean          @make -f \$(MAKEFILE) Clean
2735            -rm -f \$(EXECUTABLE) \$(EXE_AD) *.bak
2736            -rm -f $LOGFILE genmake_state genmake_*optfile
2737            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2738          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2739          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2740          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2741          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime          -rm -f *.txt STD* *diagnostics.log datetime
2742          -rm -f *_MIT_CE_000.opt0000 costfunction*0000          -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2743          -rm -rf mnc_test_*          -rm -rf mnc_test_*
2744    
 #eh3 Makefile: makefile  
2745  makefile:  makefile:
2746          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
2747  cleanlinks:  cleanlinks:
2748          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2749    
2750  # Special targets (SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2751  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2752          @echo Creating \$@ ...          @echo Creating \$@ ...
2753          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
# Line 2572  if test "x$EMBED_SRC" = xt ; then Line 2772  if test "x$EMBED_SRC" = xt ; then
2772    
2773  decode_files.o : EMBEDDED_FILES.h  decode_files.o : EMBEDDED_FILES.h
2774    
2775  ##  \$(F77FILES)  ##  \$(F77_PP_SRC_FILES)
2776  all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile  all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2777          @echo Creating \$@ ...          @echo Creating \$@ ...
2778          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2779          -rm -f all_fF.tar.gz          -rm -f all_fF.tar.gz
2780          -gzip all_fF.tar          -gzip all_fF.tar
2781    
# Line 2599  cat >>$MAKEFILE <<EOF Line 2799  cat >>$MAKEFILE <<EOF
2799          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2800  .F.o:  .F.o:
2801          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2802  .F90.o:    .F90.$FS90:
2803            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2804    .FF90.f$FS90:
2805            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2806    .$FS90.o:
2807          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2808    .f$FS90.o:
2809            cp \$< \$(basename  \$<).f90
2810            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2811  .c.o:  .c.o:
2812          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2813    .flow.flowdir:
2814            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2815    
2816  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2817  .F.p:  .F.p:
# Line 2610  cat >>$MAKEFILE <<EOF Line 2819  cat >>$MAKEFILE <<EOF
2819  .p.$FS:  .p.$FS:
2820          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2821    
2822    EOF
2823    
2824  #=========================================  #=========================================
2825  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2826    #===  for TAMC/TAF  ======================
2827    
2828    if test "x$OPENAD" = x ; then
2829    
2830    cat >>$MAKEFILE <<EOF
2831    
2832  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2833  TAF            = ${TAF}  TAF            = ${TAF}
# Line 2635  done Line 2851  done
2851  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2852  echo >> $MAKEFILE  echo >> $MAKEFILE
2853  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2854  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2855  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2856      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2857      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2858  done  done
2859  echo >> $MAKEFILE  echo >> $MAKEFILE
2860  rm -f ad_files  rm -f adSrcFiles.tmp
2861    
2862  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2863    
# Line 2650  adall: \$(EXE_AD) Line 2866  adall: \$(EXE_AD)
2866  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
2867  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
2868    
2869  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
2870          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2871          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2872          -rm -f ad_config.template          -rm -f ad_config.template
2873          @make \$(F77FILES)          @make -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
2874          @make \$(AD_FLOW_FILES)          @make -f \$(MAKEFILE) \$(FLOFILES)
2875          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS          cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
2876    
2877  ad_taf_output.$FS: ad_input_code.$FS  ad_taf_output.$FS: ad_input_code.$FS
2878          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2879            ls -l ad_input_code_ad.$FS
2880          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2881    
2882  adtafonly:  adtafonly:
2883          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2884            ls -l ad_input_code_ad.$FS
2885          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2886    
2887  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2888          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2889    
2890  ad_tamc_output.$FS: ad_input_code.$FS  ad_tamc_output.$FS: ad_input_code.$FS
2891          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2892          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2893    
2894  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2895          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2896    
2897  adonlyfwd:  adonlyfwd:
2898          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2899    
2900  adtrick:  adtrick:
2901          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2902    
2903    adobj: ad_taf_output.o \$(OBJFILES)
2904    
2905  # ... FTL ...  # ... FTL ...
2906  ftlall: ftl_taf  ftlall: ftl_taf
2907  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
2908  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
2909    
2910  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2911          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2912          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2913          -rm -f ftl_config.template          -rm -f ftl_config.template
2914          @make \$(F77FILES)          @make -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
2915          @make \$(AD_FLOW_FILES)          @make -f \$(MAKEFILE) \$(AD_FLOW_FILES)
2916          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2917    
2918  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_taf_output.$FS: ftl_input_code.$FS
2919          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2920            ls -l ftl_input_code_ftl.$FS
2921          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2922    
2923  ftltafonly:  ftltafonly:
2924          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2925            ls -l ftl_input_code_ftl.$FS
2926          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2927    
2928  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2929          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2930    
2931  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
2932          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2933          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2934    
2935  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2936          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
2937    
2938  # ... SVD ...  # ... SVD ...
2939  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
# Line 2738  svd_touch: Line 2959  svd_touch:
2959          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2960          -rm -f ftl_config.template          -rm -f ftl_config.template
2961    
2962  #=========================================  EOF
2963    
2964    fi
2965    
2966    #===  for OpenAD  ========================
2967    
2968    if test "x$OPENAD" != x ; then
2969    
2970    # ============ begin OpenAD specific section ==============
2971    
2972    cat >>$MAKEFILE <<EOF
2973    
2974    # all the source files linked from the various locations:
2975    ALL_LINKED_FILES= \
2976    \$(F77_SRC_FILES) \
2977    \$(C_SRC_FILES) \
2978    \$(H_SRC_FILES) \
2979    \$(F90_SRC_FILES) \
2980    \$(SPECIAL_FILES)
2981    
2982    ifndef OPENADROOT
2983      \$(error "Error:  environment variable OPENADROOT not defined!")
2984    endif
2985    
2986    ifndef XAIFSCHEMAROOT
2987      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2988    endif
2989    
2990    ifndef XAIFBOOSTERROOT
2991      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2992    endif
2993    
2994  EOF  EOF
2995    
2996    echo "  Add the source list for common block to module conversion "
2997    echo >> $MAKEFILE
2998    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2999    for i in `cat ${OAD_CB2M_FILES}` ; do
3000      echo    " \\" >> $MAKEFILE
3001      printf " $i" >> $MAKEFILE
3002    done
3003    echo >> $MAKEFILE
3004    
3005    echo "  Add the source list for AD code generation"
3006    echo >> $MAKEFILE
3007    printf "AD_FILES = " >> $MAKEFILE
3008    for i in `cat ${OAD_CB2M_FILES}` ; do
3009      echo    " \\" >> $MAKEFILE
3010      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3011    done
3012    AD_FILES=`cat adSrcFiles.tmp`
3013    for i in $AD_FILES ; do
3014      basename=${i%%.f}
3015      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3016      if test -z "$toBeIgnored" ; then
3017        echo    " \\" >> $MAKEFILE
3018        printf " $i" >> $MAKEFILE
3019      fi
3020    done
3021    echo >> $MAKEFILE
3022    rm -f adSrcFiles.tmp
3023    
3024    cat >>$MAKEFILE <<EOF
3025    
3026    adAll: \$(EXE_AD)
3027    .PHONY: adAll
3028    
3029    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3030    
3031    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3032    
3033    .PHONY: adDepend
3034    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3035            \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3036            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3037            -rm -f makedepend.out
3038    
3039    OPENAD_SUPPORT_F90_SRC_FILES = \
3040    w2f__types.F90 \
3041    OAD_active.F90 \
3042    OAD_cp.F90 \
3043    OAD_rev.F90 \
3044    OAD_tape.F90
3045    
3046    OPENAD_SUPPORT_C_SRC_FILES = \
3047    iaddr.c \
3048    timeRatio.c
3049    
3050    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3051            cat \$^ > \$@
3052    
3053    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3054            cat \$^ > \$@
3055    
3056    f95_test.out: f95_test_mods.f90 f95_test.f90
3057            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3058            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3059    
3060    # the file included below is created by the
3061    # postProcessor and its inclusion sets the
3062    # variable POSTPROCESSEDFILES
3063    # used below. Because the file is made during
3064    # make it won't be read until the second (recursive)
3065    # invocation in the rule below
3066    -include postProcess.make
3067    
3068    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)
3069    
3070    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3071    
3072    postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)
3073    ifeq (\$(MAKELEVEL),0)
3074            \$(MAKE) adAll
3075    else
3076            touch \$@
3077    endif
3078    
3079    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)
3080    ifeq (\$(MAKELEVEL),1)
3081            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3082    else
3083            touch \$@
3084    endif
3085    
3086    # makefile debug rule
3087    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3088    .PHONY: openad
3089    
3090    # create the module files
3091    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3092            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3093    
3094    # create the header files
3095    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3096            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3097    
3098    # change everybody else to use the new module files:
3099    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3100            ../OAD_support/cb2mUseModules.bash $< ${MPI}
3101    
3102    # makefile debug rule
3103    small_f: \$(CB2M_F90_PP_SRC_FILES)
3104    .PHONY: small_f
3105    
3106    ad_output.txt: \$(EXE_AD)
3107            @printf 'linking data files ... '
3108            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3109            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3110            @printf 'running ... '
3111            @./\$(EXE_AD) > \$@
3112    
3113    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3114    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3115            cat \$^ > \$@
3116    
3117    # strip all comments and blanks to reduce
3118    # the file size in order to reduce perl's memory requirements
3119    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3120            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3121    
3122    # mfef90 preprocessing
3123    # expand statement functions
3124    # expose mfef90 specific substring handling
3125    # add the w2f__types module
3126    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3127            ./mfef90 -r8 -z -F -N132 \$<
3128            mv \$<.B \$(basename \$<).B
3129            ./whirl2f -openad \$(basename \$<).B
3130            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3131    
3132    # canonicalizer
3133    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3134            ./preProcess.py --timing --r8 -H -S \$< -o \$@
3135    
3136    # F -> WHIRL
3137    # note that the canonicalized version cuts off at col 72
3138    # doing this also for string constants which is ok as long
3139    # as we are in fixed mode and cut of exactly there.
3140    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3141    # characters respectively.
3142    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3143            ./mfef90 -r8 -z -F \$<
3144            mv \$<.B \$@
3145    
3146    # WHIRL -> XAIF
3147    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3148            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3149    
3150    # XAIF -> XAIF'
3151    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3152            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3153    
3154    # XAIF' -> WHIRL'
3155    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3156            ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<
3157    
3158    # WHIRL' -> F'
3159    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3160            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3161    
3162    # insert template directives
3163    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3164            ../OAD_support/insertTemplateDir.bash \$< \$@
3165    
3166    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3167    # postprocess F'
3168    postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3169            # the target is a placeholder to signal execution of the rule
3170            touch \$@
3171            # this step also creates the file postProcess.make but we cannot
3172            # name it as the target or else make will try to remake it for
3173            # the include directive above for any rule, e.g. make clean
3174            ./postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<
3175    
3176    # setup some links
3177    %.xsd:
3178            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3179    
3180    mfef90:
3181            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3182    
3183    # link the support files:
3184    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3185            \$(LN) ../OAD_support/\$@ .
3186    
3187    whirl2xaif xaif2whirl:
3188            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3189    
3190    preProcess.py postProcess.py:
3191            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3192    
3193    whirl2f whirl2f_be:
3194            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3195    
3196    oadDriver:
3197            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3198    
3199    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)
3200    
3201    # ============ end OpenAD specific section ==============
3202    
3203    EOF
3204    
3205    fi
3206    
3207    #=========================================
3208    
3209  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3210      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3211  fi  fi
# Line 2777  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3241  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3241  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3242    
3243  # Create special header files  # Create special header files
3244  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3245  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3246      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3247  else  else
# Line 2794  if test ! -f AD_CONFIG.h ; then Line 3258  if test ! -f AD_CONFIG.h ; then
3258      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
3259  fi  fi
3260    
   
3261  #  Write the "state" for future records  #  Write the "state" for future records
3262  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3263      printf "" > genmake_state      printf "" > genmake_state
3264      for i in $gm_state ; do      for i in $gm_state ; do
3265          t1="t2=\$$i"          t1="t2=\$$i"
3266          eval $t1          eval $t1
3267          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3268      done      done
3269  fi  fi

Legend:
Removed from v.1.169  
changed lines
  Added in v.1.230

  ViewVC Help
Powered by ViewVC 1.1.22