/[MITgcm]/MITgcm/tools/genmake2
ViewVC logotype

Diff of /MITgcm/tools/genmake2

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph | View Patch Patch

revision 1.116 by edhill, Thu Jan 6 15:32:16 2005 UTC revision 1.169 by jmc, Fri Feb 15 19:33:34 2008 UTC
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24  }  }
25    
26  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
27  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
29      cpp_options=$1      cpp_options=$1
30      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38  }  }
39    
40  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 39  test_for_string_in_file() { Line 47  test_for_string_in_file() {
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
49          grep -i "$strng" $file          grep -i "$strng" $file
50          return 1          exit 99
51      fi      fi
52      return 0      return 0
53  }  }
# Line 122  EOF Line 130  EOF
130        stop        stop
131        end        end
132  EOF  EOF
133      test -f Makefile  &&  mv -f Makefile Makefile.bak      test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
134      cat <<EOF >> Makefile      cat <<EOF >> $MAKEFILE
135  .SUFFIXES:  .SUFFIXES:
136  .SUFFIXES: .$tfs .F  .SUFFIXES: .$tfs .F
137  .F.$tfs:  .F.$tfs:
# Line 148  EOF Line 156  EOF
156              return              return
157          fi          fi
158      fi      fi
159      rm -f genmake_hello.* Makefile      rm -f genmake_hello.* $MAKEFILE
160      test -f Makefile  &&  mv -f Makefile.bak Makefile      test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
161    
162      #  If we make it here, use the extensions      #  If we make it here, use the extensions
163      FS=$tfs      FS=$tfs
# Line 181  look_for_makedepend()  { Line 189  look_for_makedepend()  {
189      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
190          which makedepend > /dev/null 2>&1          which makedepend > /dev/null 2>&1
191          RV0=$?          RV0=$?
192            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
193            #  echo 'MAKEFILE="'$MAKEFILE'"'
194            cat <<EOF >> $MAKEFILE
195    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
196    #
197    #   Some "makedepend" implementations will die if they cannot
198    #   find a Makefile -- so this file is here to gives them an
199    #   empty one to find and parse.
200    EOF
201          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
202        program test        program test
203        write(*,*) 'test'        write(*,*) 'test'
# Line 189  look_for_makedepend()  { Line 206  look_for_makedepend()  {
206  EOF  EOF
207          makedepend genmake_tc.f > /dev/null 2>&1          makedepend genmake_tc.f > /dev/null 2>&1
208          RV1=$?          RV1=$?
209            test -f $MAKEFILE  &&  rm -f $MAKEFILE
210            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
211          if test "x${RV0}${RV1}" = x00 ; then          if test "x${RV0}${RV1}" = x00 ; then
212              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
213          else          else
# Line 237  build_cyrus_makedepend()  { Line 256  build_cyrus_makedepend()  {
256      fi      fi
257  }  }
258    
259    
260    build_embed_encode()
261    {
262        printf "  building the embed-encode utility...  "
263        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265                echo
266                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267                echo
268                EMBED_SRC=f
269                return 1
270            fi
271            clist="cc gcc c89 $CC"
272            for ic in $clist ; do
273                comm="$ic -o encode_files encode_files.c"
274                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275                RETVAL=$?
276                if test "x$RETVAL" = x0 ; then
277                    echo "OK"
278                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279                    return 0
280                fi
281            done
282            echo
283            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
284            echo "      so it has been disabled"
285            echo
286            EMBED_SRC=f
287            return 1
288        fi
289        echo "OK"
290        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291    }
292    
293    
294  # Guess possible config options for this host  # Guess possible config options for this host
295  find_possible_configs()  {  find_possible_configs()  {
296    
# Line 271  find_possible_configs()  { Line 325  find_possible_configs()  {
325    
326      #================================================================      #================================================================
327      #  look for possible C compilers      #  look for possible C compilers
328      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329      p_CC=      p_CC=
330      for c in $tmp ; do      for c in $tmp ; do
331          rm -f ./genmake_hello.c  ./genmake_hello          rm -f ./genmake_hello.c  ./genmake_hello
# Line 310  EOF Line 364  EOF
364    
365      #================================================================      #================================================================
366      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
367      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 342  EOF Line 396  EOF
396      else      else
397          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
398          echo "   "$p_FC          echo "   "$p_FC
399          if test "x$FC" = x ; then      fi
400              FC=`echo $p_FC | $AWK '{print $1}'`  
401              echo "  Setting FORTRAN compiler to: "$FC      #  Use the first of the compilers found in the current PATH
402          fi      #  that has a correctly-named optfile
403        if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
404            for i in $p_FC ; do
405                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
406                if test -r $OPTFILE ; then
407                    echo "  Setting OPTFILE to: "$OPTFILE
408                    break
409                fi
410            done
411      fi      fi
412    
413      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
# Line 516  Usage: "$0" [OPTIONS] Line 578  Usage: "$0" [OPTIONS]
578            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
579            is being used.            is being used.
580    
581        -ignoretime | -ignore_time | --ignoretime | --ignore_time
582              Ignore all the "wall clock" routines entirely.  This will
583              not in any way hurt the model results -- it simply means
584              that the code that checks how long the model spends in
585              various routines will give junk values.
586    
587        -ts | --ts
588              Produce timing information per timestep
589        -papis | --papis
590              Produce summary MFlop/s (and IPC) with PAPI per timestep
591        -pcls | --pcls
592              Produce summary MFlop/s etc. with PCL per timestep
593        -foolad | --foolad
594              Fool the AD code generator
595        -papi | --papi
596              Performance analysis with PAPI
597        -pcl | --pcl
598              Performance analysis with PCL
599        -hpmt | --hpmt
600              Performance analysis with the HPM Toolkit
601    
602        -gsl | --gsl
603              Use GSL to control floating point rounding and precision
604        -devel | --devel
605              Add additional warning and debugging flags for development
606    
607      -mpi | --mpi      -mpi | --mpi
608            Include MPI header files and link to MPI libraries            Include MPI header files and link to MPI libraries
609      -mpi=PATH | --mpi=PATH      -mpi=PATH | --mpi=PATH
# Line 523  Usage: "$0" [OPTIONS] Line 611  Usage: "$0" [OPTIONS]
611            set to PATH. i.e. Include files from \$PATH/include, link to libraries            set to PATH. i.e. Include files from \$PATH/include, link to libraries
612            from \$PATH/lib and use binaries from \$PATH/bin.            from \$PATH/lib and use binaries from \$PATH/bin.
613    
614        -es | --es | -embed-source | --embed-source
615              Embed a tarball containing the full source code
616              (including the Makefile, etc.) used to build the
617              executable [off by default]
618    
619      -bash NAME      -bash NAME
620            Explicitly specify the Bourne or BASH shell to use            Explicitly specify the Bourne or BASH shell to use
621    
# Line 581  WARNING: Please contact <MITgcm-support@ Line 674  WARNING: Please contact <MITgcm-support@
674  EOF  EOF
675          return 1          return 1
676      fi      fi
677      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
678        subroutine tcall( string )        subroutine tcall( string )
679        character*(*) string        character*(*) string
680        call tsub( string )        call tsub( string )
681        end        end
682  EOF  EOF
683      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
684      RETVAL=$?      RETVAL=$?
685      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
686          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 653  void FC_NAMEMANGLE(cloc) ( double *curti Line 746  void FC_NAMEMANGLE(cloc) ( double *curti
746   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
747  }  }
748  EOF  EOF
749      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
750        echo $COMM >> genmake_warnings
751        $COMM >> genmake_warnings 2>&1
752      RET_C=$?      RET_C=$?
753      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
754        program hello        program hello
755        Real*8 wtime        REAL*8 wtime
756        external cloc        external cloc
757        call cloc(wtime)        call cloc(wtime)
758        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
759        end program hello        end
760  EOF  EOF
761      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
762        echo $COMM >> genmake_warnings
763        $COMM >> genmake_warnings 2>&1
764      RET_F=$?      RET_F=$?
765      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
766      RETVAL=$?      RETVAL=$?
767      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
768          HAVE_CLOC=t          HAVE_CLOC=t
# Line 675  EOF Line 772  EOF
772  }  }
773    
774    
775    check_HAVE_SIGREG()  {
776        if test ! "x$HAVE_SIGREG" = x ; then
777            return
778        fi
779        get_fortran_c_namemangling
780        cat <<EOF > genmake_tc_1.c
781    $FC_NAMEMANGLE
782    #include <stdlib.h>
783    #include <stdio.h>
784    #include <signal.h>
785    #include <errno.h>
786    #include <ucontext.h>
787    
788    int * ip;
789    
790    static void killhandler(
791        unsigned int sn, siginfo_t  si, struct ucontext *sc )
792    {
793        *ip = *ip + 1;
794        return;
795    }
796    
797    void FC_NAMEMANGLE(sigreg) (int * aip)
798    {
799        struct sigaction s;
800        ip = aip;
801        s.sa_flags = SA_SIGINFO;
802        s.sa_sigaction = (void *)killhandler;
803        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
804            printf("Sigaction returned error = %d\n", errno);
805            exit(0);
806        }
807        return;
808    }
809    EOF
810        COMM="$CC $CFLAGS -c genmake_tc_1.c"
811        echo $COMM >> genmake_warnings
812        $COMM >> genmake_warnings 2>&1
813        RET_C=$?
814        cat <<EOF > genmake_tc_2.$FS
815          program hello
816          integer anint
817          common /iv/ anint
818          external sigreg
819          call sigreg(anint)
820          end
821    EOF
822        echo >> genmake_warnings
823        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
824        cat genmake_tc_2.$FS >> genmake_warnings
825        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
826        echo $COMM >> genmake_warnings
827        $COMM >> genmake_warnings 2>&1
828        RETVAL=$?
829        if test "x$RETVAL" = x0 ; then
830            HAVE_SIGREG=t
831            DEFINES="$DEFINES -DHAVE_SIGREG"
832        fi
833        rm -f genmake_tc*
834    }
835    
836    
837    check_HAVE_SETRLSTK()  {
838        if test "x$HAVE_SETRLSTK" = xt ; then
839            DEFINES="$DEFINES -DHAVE_SETRLSTK"
840            return
841        fi  
842        if test ! "x$HAVE_SETRLSTK" = x ; then
843            return
844        fi
845        get_fortran_c_namemangling
846        cat <<EOF > genmake_tc_1.c
847    $FC_NAMEMANGLE
848    #include <sys/time.h>
849    #include <sys/resource.h>
850    #include <unistd.h>
851    void FC_NAMEMANGLE(setrlstk) ()
852    {
853        struct rlimit rls;
854        rls.rlim_cur = RLIM_INFINITY;
855        rls.rlim_max = RLIM_INFINITY;
856        setrlimit(RLIMIT_STACK, &rls);
857        return;
858    }
859    EOF
860        COMM="$CC $CFLAGS -c genmake_tc_1.c"
861        echo $COMM >> genmake_warnings
862        $COMM >> genmake_warnings 2>&1
863        RET_C=$?
864        cat <<EOF > genmake_tc_2.$FS
865          program hello
866          external setrlstk
867          call setrlstk()
868          end
869    EOF
870        echo >> genmake_warnings
871        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
872        cat genmake_tc_2.$FS >> genmake_warnings
873        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
874        echo $COMM >> genmake_warnings
875        $COMM >> genmake_warnings 2>&1
876        RETVAL=$?
877        if test "x$RETVAL" = x0 ; then
878            HAVE_SETRLSTK=t
879            DEFINES="$DEFINES -DHAVE_SETRLSTK"
880        fi
881        rm -f genmake_tc*
882    }
883    
884    
885  check_HAVE_STAT()  {  check_HAVE_STAT()  {
886      get_fortran_c_namemangling      get_fortran_c_namemangling
887      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
# Line 696  void FC_NAMEMANGLE(tfsize) ( int *nbyte Line 903  void FC_NAMEMANGLE(tfsize) ( int *nbyte
903          *nbyte = -1;          *nbyte = -1;
904  }  }
905  EOF  EOF
906      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
907        echo $COMM >> genmake_warnings
908        $COMM >> genmake_tc.log 2>&1
909      RET_C=$?      RET_C=$?
910      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
911        program hello        program hello
912        integer nbyte        integer nbyte
913        call tfsize(nbyte)        call tfsize(nbyte)
914        print *," HELLO WORLD", nbyte        print *," HELLO WORLD", nbyte
915        end program hello        end
916  EOF  EOF
917      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      echo >> genmake_warnings
918      RET_F=$?      echo "running: check_HAVE_STAT()" >> genmake_warnings
919      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      cat genmake_tc_2.$FS >> genmake_warnings
920        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
921        echo $COMM >> genmake_warnings
922        $COMM >> genmake_tc.log 2>&1
923      RETVAL=$?      RETVAL=$?
924      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
925          HAVE_STAT=t          HAVE_STAT=t
# Line 721  check_netcdf_libs()  { Line 933  check_netcdf_libs()  {
933      if test ! "x$SKIP_NETCDF_CHECK" = x ; then      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
934          return          return
935      fi      fi
936      echo "" > genmake_tnc.log      echo >> genmake_warnings
937      cat <<EOF > genmake_tnc.for      echo "running: check_netcdf_libs()" >> genmake_warnings
938        cat <<EOF > genmake_tnc.F
939        program fgennc        program fgennc
940  #include "netcdf.inc"  #include "netcdf.inc"
941  EOF  EOF
942      if test ! "x$MPI" = x ; then      if test ! "x$MPI" = x ; then
943          echo '#include "mpif.h"' >> genmake_tnc.for          echo '#include "mpif.h"' >> genmake_tnc.F
944      fi      fi
945      cat <<EOF >> genmake_tnc.for      cat <<EOF >> genmake_tnc.F
946        integer iret, ncid, xid        integer iret, ncid, xid
947        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
948        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
# Line 739  EOF Line 952  EOF
952        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
953        end        end
954  EOF  EOF
955      echo "Executing:" > genmake_tnc.log      echo "===  genmake_tnc.F  ===" > genmake_tnc.log
956      echo "  $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f" \      cat genmake_tnc.F >> genmake_tnc.log
957          > genmake_tnc.log      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
958      RET_CPP=f      RET_CPP=f
959      $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
960          &&  RET_CPP=t      echo "$COMM" >> genmake_tnc.log
961        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
962      if test "x$RET_CPP" = xf ; then      if test "x$RET_CPP" = xf ; then
963          echo "  WARNING: CPP failed to pre-process the netcdf test." \          echo "  WARNING: CPP failed to pre-process the netcdf test." \
964              > genmake_tnc.log              >> genmake_tnc.log
965          echo "    Please check that \$INCLUDES is properly set." \          echo "    Please check that \$INCLUDES is properly set." \
966              > genmake_tnc.log              >> genmake_tnc.log
967      fi      fi
968      echo "Executing:" > genmake_tnc.log      echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
969      echo "  $FC $FFLAGS $FOPTIM -c genmake_tnc.f" > genmake_tnc.log      echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
970      echo "  $LINK -o genmake_tnc.o $LIBS" > genmake_tnc.log      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
971      $FC $FFLAGS $FOPTIM -c genmake_tnc.f >> genmake_tnc.log 2>&1  \          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
         &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1  
972      RET_COMPILE=$?      RET_COMPILE=$?
973        cat genmake_tnc.log >> genmake_warnings
974    
975      #EH3  Remove test program execution for machines that either disallow      #EH3  Remove test program execution for machines that either disallow
976      #EH3  execution or cannot support it (eg. cross-compilers)      #EH3  execution or cannot support it (eg. cross-compilers)
# Line 769  EOF Line 983  EOF
983          HAVE_NETCDF=t          HAVE_NETCDF=t
984      else      else
985          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
986          $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \          echo "try again with added '-lnetcdf'" > genmake_tnc.log
987              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.f >> genmake_tnc.log 2>&1  \          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
988              &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
989            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
990            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
991                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
992                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
993          RET_COMPILE=$?          RET_COMPILE=$?
994            cat genmake_tnc.log >> genmake_warnings
995          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
996              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
997              HAVE_NETCDF=t              HAVE_NETCDF=t
998          else          else
999            # try again with "-lnetcdff" added to the libs
1000                echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1001                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1002                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1003                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1004                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1005                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1006                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1007                RET_COMPILE=$?
1008              cat genmake_tnc.log >> genmake_warnings              cat genmake_tnc.log >> genmake_warnings
1009                if test "x$RET_COMPILE" = x0 ; then
1010                    LIBS="$LIBS -lnetcdff -lnetcdf"
1011                    HAVE_NETCDF=t
1012                fi
1013          fi          fi
1014      fi      fi
1015      rm -f genmake_tnc*      rm -f genmake_tnc*
# Line 804  DEFINES= Line 1036  DEFINES=
1036  PACKAGES=  PACKAGES=
1037  ENABLE=  ENABLE=
1038  DISABLE=  DISABLE=
1039  MAKEFILE=  # MAKEFILE=
1040  #MAKEDEPEND=  # MAKEDEPEND=
1041  PDEPEND=  PDEPEND=
1042  DUMPSTATE=t  DUMPSTATE=t
1043  PDEFAULT=  PDEFAULT=
# Line 813  OPTFILE= Line 1045  OPTFILE=
1045  INCLUDES="-I. $INCLUDES"  INCLUDES="-I. $INCLUDES"
1046  FFLAGS=  FFLAGS=
1047  FOPTIM=  FOPTIM=
1048    FEXTRAFLAGS=
1049  CFLAGS=  CFLAGS=
1050  KFLAGS1=  KFLAGS1=
1051  KFLAGS2=  KFLAGS2=
# Line 823  NOOPTFILES= Line 1056  NOOPTFILES=
1056  NOOPTFLAGS=  NOOPTFLAGS=
1057  MPI=  MPI=
1058  MPIPATH=  MPIPATH=
1059    TS=
1060    PAPIS=
1061    PCLS=
1062    FOOLAD=
1063    PAPI=
1064    PCL=
1065    HPMT=
1066    GSL=
1067    DEVEL=
1068    HAVE_TEST_L=
1069    
1070  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1071  HAVE_SYSTEM=  HAVE_SYSTEM=
1072  HAVE_FDATE=  HAVE_FDATE=
1073  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1074  HAVE_CLOC=  HAVE_CLOC=
1075    # HAVE_SETRLSTK=
1076  HAVE_STAT=  HAVE_STAT=
1077  HAVE_NETCDF=  HAVE_NETCDF=
1078  HAVE_ETIME=  HAVE_ETIME=
1079    IGNORE_TIME=
1080    
1081  MODS=  MODS=
1082  TOOLSDIR=  TOOLSDIR=
# Line 844  BASH= Line 1089  BASH=
1089  PWD=`pwd`  PWD=`pwd`
1090  test "x$MAKE" = x  &&  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1091  test "x$AWK" = x   &&  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1092    EMBED_SRC=
1093  THISHOST=`hostname`  THISHOST=`hostname`
1094  THISCWD=`pwd`  THISCWD=`pwd`
1095  THISDATE=`date`  THISDATE=`date`
# Line 877  TAMC_EXTRA= Line 1123  TAMC_EXTRA=
1123    
1124  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1125  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1126  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"
1127    
1128  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1129  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1130  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1131  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1132  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
# Line 907  EOF Line 1153  EOF
1153    
1154  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1155  gm_local="genmake_local"  gm_local="genmake_local"
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
1156  printf "  getting local config information:  "  printf "  getting local config information:  "
1157  if test -f $gm_local ; then  if test -f $gm_local ; then
1158      echo "using $gm_local"      echo "using $gm_local"
# Line 1057  for ac_option in "$@" ; do Line 1297  for ac_option in "$@" ; do
1297          -noieee | --noieee)          -noieee | --noieee)
1298              IEEE= ;;              IEEE= ;;
1299    
1300            -ts | --ts)
1301                TS=true ;;
1302            -papis | --papis)
1303                PAPIS=true ;;
1304            -pcls | --pcls)
1305                PCLS=true ;;
1306            -foolad | --foolad)
1307                FOOLAD=true ;;
1308            -papi | --papi)
1309                PAPI=true ;;
1310            -pcl | --pcl)
1311                PCL=true ;;
1312            -hpmt | --hpmt)
1313                HPMT=true ;;
1314    
1315            -gsl | --gsl)
1316                GSL=true ;;
1317    
1318            -devel | --devel)
1319                DEVEL=true ;;
1320    
1321          -mpi | --mpi)          -mpi | --mpi)
1322              MPI=true ;;              MPI=true ;;
1323          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
# Line 1080  for ac_option in "$@" ; do Line 1341  for ac_option in "$@" ; do
1341              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1342          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1343              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1344            
1345            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1346                IGNORE_TIME="-DIGNORE_TIME" ;;
1347    
1348            -es | --es | -embed-source | --embed-source)
1349                EMBED_SRC=t ;;
1350    
1351          -*)          -*)
1352              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 1095  for ac_option in "$@" ; do Line 1362  for ac_option in "$@" ; do
1362            
1363  done  done
1364    
1365    
1366  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1367      echo      echo
1368      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1369      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1370      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1371      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/devel_HOWTO/"
1372      echo      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1373      echo "  for directions on how to setup and use the new \"genmake2\" input"      echo "WARNING: ignore \"./.genmakerc\" and continue."
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
1374      echo      echo
1375  fi  fi
1376    
1377  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
1378  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1379      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1380      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1381          ROOTDIR=".."          ROOTDIR=".."
1382      else      else
1383          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
# Line 1136  fi Line 1403  fi
1403    
1404  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1405  if test -f "${ROOTDIR}/doc/tag-index" ; then  if test -f "${ROOTDIR}/doc/tag-index" ; then
1406      THISVER=`grep checkpoint ${ROOTDIR}/doc/tag-index | head -1`      THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`
1407    fi
1408    
1409    if test "x$MAKEFILE" = x ; then
1410        MAKEFILE="Makefile"
1411  fi  fi
1412    
1413  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
# Line 1168  if test "x$OPTFILE" != xNONE ; then Line 1439  if test "x$OPTFILE" != xNONE ; then
1439      fi      fi
1440  fi  fi
1441    
 #  Check for broken systems that cannot correctly distinguish *.F and *.f files  
 # check_for_broken_Ff  
   
1442  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:  "
1443  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1444      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
# Line 1198  if test "x${AD_OPTFILE}" != xNONE ; then Line 1466  if test "x${AD_OPTFILE}" != xNONE ; then
1466      fi      fi
1467  fi  fi
1468    
1469    #====================================================================
1470    #  Set default values if not set by the optfile
1471    #
1472  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1473  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1474  if test ! "x$BASH" = x ; then  if test ! "x$BASH" = x ; then
# Line 1274  Error: The command "ln -s" failed -- ple Line 1545  Error: The command "ln -s" failed -- ple
1545  EOF  EOF
1546      exit 1      exit 1
1547  fi  fi
1548    test -L genmake_tlink > /dev/null 2>&1
1549    RETVAL=$?
1550    if test "x$RETVAL" = x0 ; then
1551        HAVE_TEST_L=t
1552    fi
1553  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1554    
1555  #  Check for broken *.F/*.f handling and fix if possible  #  Check for broken *.F/*.f handling and fix if possible
# Line 1284  if test ! "x$MPI" = x ; then Line 1560  if test ! "x$MPI" = x ; then
1560        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1561  fi  fi
1562    
1563    if test ! "x$TS" = x ; then
1564          echo "  Turning on timing per timestep"
1565          if test ! "x$FOOLAD" = x ; then
1566                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1567          else
1568                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1569          fi
1570          PACKAGES="$PACKAGES showflops"
1571    fi
1572    if test ! "x$PAPIS" = x ; then
1573          echo "  Turning on PAPI flop summary per timestep"
1574          echo "  Please make sure PAPIINC, PAPILIB are defined"
1575          if test ! "x$FOOLAD" = x ; then
1576                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1577          else
1578                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1579          fi
1580          INCLUDES="$INCLUDES $PAPIINC"
1581          LIBS="$LIBS $PAPILIB"
1582          PACKAGES="$PACKAGES showflops"
1583    fi
1584    if test ! "x$PCLS" = x ; then
1585          echo "  Turning on PCL counter summary per timestep"
1586          echo "  Please make sure PCLINC, PCLLIB are defined"
1587          if test ! "x$FOOLAD" = x ; then
1588                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1589          else
1590                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1591          fi
1592          INCLUDES="$INCLUDES $PCLINC"
1593          LIBS="$LIBS $PCLLIB"
1594          PACKAGES="$PACKAGES showflops"
1595    fi
1596    if test ! "x$PAPI" = x ; then
1597          if test ! "x$PAPIS" = x ; then
1598              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1599              echo "  Sticking with PAPI flop summary per timestep!"
1600          else
1601              echo "  Turning on performance analysis with PAPI"
1602              echo "  Please make sure PAPIINC, PAPILIB are defined"
1603              DEFINES="$DEFINES -DUSE_PAPI"
1604              INCLUDES="$INCLUDES $PAPIINC"
1605              LIBS="$LIBS $PAPILIB"
1606          fi
1607    fi
1608    if test ! "x$PCL" = x ; then
1609          if test ! "x$PCLS" = x ; then
1610              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1611              echo "  Sticking with PCL flop summary per timestep!"
1612          else
1613              echo "  Turning on performance analysis with PCL"
1614              echo "  Please make sure PCLINC, PCLLIB are defined"
1615              DEFINES="$DEFINES -DUSE_PCL"
1616              INCLUDES="$INCLUDES $PCLINC"
1617              LIBS="$LIBS $PCLLIB"
1618          fi
1619    fi
1620    if test ! "x$HPMT" = x ; then
1621          if test ! "x$PAPI" = x ; then
1622              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1623              echo "  Sticking with PAPI!"
1624          else if test ! "x$PCL" = x ; then
1625              echo "  PCL and the HPM Toolkit cannot co-exist!"
1626              echo "  Sticking with PCL!"
1627          else
1628              echo "  Turning on performance analysis with the HPM Toolkit"
1629              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1630              DEFINES="$DEFINES -DUSE_LIBHPM"
1631              INCLUDES="$INCLUDES $HPMTINC"
1632              LIBS="$LIBS $HPMTLIB"
1633          fi
1634          fi
1635    fi
1636    if test ! "x$GSL" = x ; then
1637          echo "  Turning on use of GSL to control floating point calculations"
1638          echo "  Please make sure GSLINC, GSLLIB are defined"
1639          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1640          INCLUDES="$INCLUDES $GSLINC"
1641          LIBS="$LIBS $GSLLIB"
1642    fi
1643    
1644  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1645  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1646  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1647        program hello        program hello
1648        call system('echo hi')        call system('echo hi')
1649        end        end
1650  EOF  EOF
1651  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1652  RETVAL=$?  RETVAL=$?
1653  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1654      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 1304  fi Line 1661  fi
1661  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1662    
1663  printf "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1664  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1665        program hello        program hello
1666        CHARACTER(128) string        CHARACTER*(128) string
1667        string = ' '        string = ' '
1668        call fdate( string )        call fdate( string )
1669        print *, string        print *, string
1670        end        end
1671  EOF  EOF
1672  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1673  RETVAL=$?  RETVAL=$?
1674  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1675      HAVE_FDATE=t      HAVE_FDATE=t
# Line 1325  fi Line 1682  fi
1682  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1683    
1684  printf "  Do we have the etime() command using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1685  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1686        program hello        program hello
1687        REAL*4 ACTUAL, TARRAY(2)        REAL*4 ACTUAL, TARRAY(2)
1688        EXTERNAL ETIME        EXTERNAL ETIME
# Line 1334  cat > genmake_tcomp.f <<EOF Line 1691  cat > genmake_tcomp.f <<EOF
1691        print *, tarray        print *, tarray
1692        end        end
1693  EOF  EOF
1694  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1695  RETVAL=$?  RETVAL=$?
1696  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1697      HAVE_ETIME=t      HAVE_ETIME=t
# Line 1352  if test "x$HAVE_CLOC" != x ; then Line 1709  if test "x$HAVE_CLOC" != x ; then
1709      echo "yes"      echo "yes"
1710  else  else
1711      echo "no"      echo "no"
1712        if test "x$EMBED_SRC" = xt ; then
1713            echo "    WARNING: you requested file embedding but it has"
1714            echo "      been disabled since C code cannot be called"
1715            EMBED_SRC=
1716        fi
1717    fi
1718    rm -f genmake_t*
1719    
1720    printf "  Can we unlimit the stack size using $FC...  "
1721    check_HAVE_SETRLSTK
1722    if test "x$HAVE_SETRLSTK" = xt ; then
1723        echo "yes"
1724    else
1725        echo "no"
1726    fi
1727    rm -f genmake_t*
1728    
1729    printf "  Can we register a signal handler using $FC...  "
1730    check_HAVE_SIGREG
1731    if test "x$HAVE_SIGREG" = xt ; then
1732        echo "yes"
1733    else
1734        echo "no"
1735  fi  fi
1736  rm -f genmake_t*  rm -f genmake_t*
1737    
# Line 1371  if test "x$HAVE_NETCDF" != x ; then Line 1751  if test "x$HAVE_NETCDF" != x ; then
1751  else  else
1752      echo "no"      echo "no"
1753  fi  fi
1754    DEFINES="$DEFINES $IGNORE_TIME"
1755    
1756    if test "x$EMBED_SRC" = xt ; then
1757        build_embed_encode
1758    fi
1759    if test "x$EMBED_SRC" = xt ; then
1760        ENABLE="$ENABLE embed_files"
1761    fi
1762    
1763    
1764  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
# Line 1388  for d in $MODS ; do Line 1776  for d in $MODS ; do
1776  done  done
1777  echo  echo
1778    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1779  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1780      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1781  fi  fi
# Line 1461  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1846  if test -r $ROOTDIR"/eesupp/src/Makefile
1846      fi      fi
1847  fi  fi
1848    
1849  #same for exch2  #same for pkg/exch2 and pkg/regrid
1850  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
1851      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1852      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
1853      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1
1854      if test "x${RETVAL}" = x0 ; then          RETVAL=$?
1855          rm -f make_exch2.errors          if test "x${RETVAL}" = x0 ; then
1856      else              rm -f make_${pdir}.errors
1857          echo "Error: problem encountered while building source files in exch2:"          else
1858          cat make_exch2.errors 1>&2              echo "Error: problem encountered while building source files in pkg/${pdir}:"
1859          exit 1              cat make_${pdir}.errors 1>&2
1860                exit 1
1861            fi
1862      fi      fi
1863  fi  done
1864    
1865  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1866  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
# Line 1584  done Line 1971  done
1971  rm -f ./.tmp_pack  rm -f ./.tmp_pack
1972  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1973    
1974  #  Check availability of NetCDF and then either build the MNC template  #  Check for package MNC: if NetCDF is available, then build the MNC
1975  #  files or delete mnc from the list of available packages.  #  template files ; otherwise, delete mnc from the list of packages.
1976  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1977  RETVAL=$?  RETVAL=$?
1978  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
# Line 1619  EOF Line 2006  EOF
2006      fi      fi
2007  fi  fi
2008    
2009    #  Check for package PROFILES: if NetCDF is not available,
2010    #  then delete profiles from the list of available packages.
2011    echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1
2012    RETVAL=$?
2013    if test "x$RETVAL" = x0 ; then
2014        if test "x$HAVE_NETCDF" != xt ; then
2015            cat <<EOF
2016    
2017    *********************************************************************
2018    WARNING: the "profiles" package was enabled but tests failed to
2019      compile NetCDF applications.  Please check that:
2020    
2021      1) NetCDF is correctly installed for this compiler and
2022      2) the LIBS variable (within the "optfile") specifies the correct
2023           NetCDF library to link against.
2024    
2025      Due to this failure, the "profiles" package is now DISABLED.
2026    *********************************************************************
2027    
2028    EOF
2029            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2030            DISABLE="$DISABLE profiles"
2031        fi
2032    fi
2033    
2034  echo "  applying package dependency rules"  echo "  applying package dependency rules"
2035  ck=  ck=
2036  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
2037      i=0      i=0
2038      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2039      rtot=$nname      rtot=$nname
2040      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2041    
2042          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2043          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1659  while test "x$ck" != xtt ; do Line 2071  while test "x$ck" != xtt ; do
2071    
2072          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2073          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2074                #echo "   " $pname ": need to add :" $dname
2075              in_dis="f"              in_dis="f"
2076              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2077                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1813  for i in $SOURCEDIRS ; do Line 2226  for i in $SOURCEDIRS ; do
2226          cat $i/$j >> ad_files          cat $i/$j >> ad_files
2227      done      done
2228  done  done
2229    if test ! "x"$FS = "x.f" ; then
2230        cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f
2231        mv -f ad_files_f ad_files
2232    fi
2233    
2234  echo  echo
2235  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
# Line 1824  for i in $INCLUDEDIRS ; do Line 2240  for i in $INCLUDEDIRS ; do
2240      fi      fi
2241  done  done
2242    
2243    if test ! "x$DIVA" = x ; then
2244        echo "  Creating the pseudo-MPI include directory"
2245        INCLUDES="-I./mpi_headers $INCLUDES"
2246        rm -rf ./mpi_headers
2247        mkdir -p ./mpi_headers
2248    
2249        if test "x$MPIINCLUDEDIR" = x ; then
2250            if test "x$MPIHOME" = x ; then
2251                MPIHOME='/usr'
2252            fi
2253            MPIINCLUDEDIR='$MPIHOME/include'
2254        fi
2255        
2256        if test -r $MPIINCLUDEDIR/mpif.h ; then
2257            for i in $MPI_HEADER_FILES; do
2258                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2259            done
2260    
2261            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2262        else
2263            echo " We cannot create a copy of mpif.h!"
2264    #       exit -1
2265        fi
2266    fi
2267    
2268  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2269  rm -rf .links.tmp  rm -rf .links.tmp
2270  mkdir .links.tmp  mkdir .links.tmp
2271    touch .links.tmp/foo
2272    if test ! -r ".links.tmp/foo" ; then
2273        echo
2274        echo "ERROR : something is wrong with your directory permissions or"
2275        echo "   your user file-creation mask (\"umask\") since creating a"
2276        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2277        echo "   not working.  Please try setting your umask to something"
2278        echo "   sane such as:"
2279        echo
2280        echo "      umask 0002"
2281        echo
2282        echo "   and please verify that you have the proper permissions for"
2283        echo "   creating sub-directories and then reading files created"
2284        echo "   within them."
2285        echo
2286        exit 1
2287    fi
2288    rm -f .links.tmp/foo
2289  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2290  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2291  printf 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
# Line 1842  for d in $alldirs ; do Line 2301  for d in $alldirs ; do
2301      for sf in $sfiles ; do      for sf in $sfiles ; do
2302          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2303              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2304                    ignore_f=f
2305                  case $d/$sf in                  case $d/$sf in
2306                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2307                            ignore_f=t
2308                          ;;                          ;;
2309                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2310                            ignore_f=t
2311                          ;;                          ;;
2312                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2313                            ignore_f=t
2314                          ;;                          ;;
2315                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2316                            ignore_f=t
2317                            ;;
2318                      ./EMBEDDED_FILES.h)
2319                            ignore_f=t
2320                          ;;                          ;;
2321                    *)                    *)
2322                          touch .links.tmp/$sf                          #  For the local directory *ONLY*,
2323                          deplist="$deplist $sf"                          #  ignore all soft-links
2324                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2325                                ignore_f=t
2326                            else
2327                                touch .links.tmp/$sf
2328                                deplist="$deplist $sf"
2329                            fi
2330                          ;;                          ;;
2331                  esac                  esac
2332                  extn=`echo $sf | $AWK -F. '{print $NF}'`                  if test "x$ignore_f" = xf ; then
2333                  case $extn in                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2334                      F)                      case $extn in
2335                          echo    " \\"  >> srclist.inc                          F)
2336                          printf " $sf" >> srclist.inc                              echo    " \\"  >> srclist.inc
2337                          ;;                              printf " $sf" >> srclist.inc
2338                      F90)                              ;;
2339                          echo    " \\"  >> f90srclist.inc                          F90)
2340                          printf " $sf" >> f90srclist.inc                              echo    " \\"  >> f90srclist.inc
2341                          ;;                              printf " $sf" >> f90srclist.inc
2342                      c)                              ;;
2343                          echo    " \\"  >> csrclist.inc                          c)
2344                          printf " $sf" >> csrclist.inc                              echo    " \\"  >> csrclist.inc
2345                          ;;                              printf " $sf" >> csrclist.inc
2346                      h)                              ;;
2347                          echo    " \\"  >> hlist.inc                          h)
2348                          printf " $sf" >> hlist.inc                              echo    " \\"  >> hlist.inc
2349                          ;;                              printf " $sf" >> hlist.inc
2350                      flow)                              ;;
2351                          echo    " \\"  >> ad_flow_files.inc                          flow)
2352                          printf " $sf" >> ad_flow_files.inc                              echo    " \\"  >> ad_flow_files.inc
2353                          ;;                              printf " $sf" >> ad_flow_files.inc
2354                  esac                              ;;
2355                        esac
2356                    fi
2357              fi              fi
2358          fi          fi
2359      done      done
# Line 1954  DISABLED_PACKAGES = ${DISABLED_PACKAGES} Line 2429  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2429    
2430  # These files are created by Makefile  # These files are created by Makefile
2431  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2432  EOF  EOF
2433    
2434  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2435        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2436    else
2437        echo "EMBEDDED_FILES = " >>$MAKEFILE
2438    fi
2439    
2440    #  Note: figure out some way to add Hyades JAM libraries here
2441  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2442  # Unix ln (link)  # Unix ln (link)
2443  LN = ${LN}  LN = ${LN}
# Line 1985  INCLUDES = ${INCLUDES} Line 2464  INCLUDES = ${INCLUDES}
2464  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2465  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2466  # Optim./debug for FC  # Optim./debug for FC
2467  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2468  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2469  # Optim./debug for FC  # Optim./debug for FC
2470  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
# Line 2009  cat hlist.inc         >> $MAKEFILE Line 2488  cat hlist.inc         >> $MAKEFILE
2488  cat ad_flow_files.inc >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
2489  echo >> $MAKEFILE  echo >> $MAKEFILE
2490  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
2491  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE
2492  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
2493  echo >> $MAKEFILE  echo >> $MAKEFILE
2494  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
# Line 2020  rm -f ad_flow_files.inc Line 2499  rm -f ad_flow_files.inc
2499  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2500    
2501  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2502  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2503          @echo Creating \$@ ...          @echo Creating \$@ ...
2504          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2505  depend:  depend:
# Line 2029  depend: Line 2508  depend:
2508          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2509          -rm -f makedepend.out          -rm -f makedepend.out
2510    
2511    lib: libmitgcmuv.a
2512    
2513    libmitgcmuv.a: \$(OBJFILES)
2514            ar rcv libmitgcmuv.a \$(OBJFILES)
2515            ar d   libmitgcmuv.a main.o
2516    
2517  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
2518    
2519  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
# Line 2038  output.txt: \$(EXECUTABLE) Line 2523  output.txt: \$(EXECUTABLE)
2523          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2524    
2525  clean:  clean:
2526          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2527            -rm -rf *.o
2528            -rm -rf *.$FS
2529  Clean:  Clean:
2530          @make clean          @make clean
2531          @make cleanlinks          @make cleanlinks
2532          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES)
2533          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
2534            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2535  CLEAN:  CLEAN:
2536          @make Clean          @make Clean
2537          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2538          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2539          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2540          -rm -f \$(EXECUTABLE) output.txt STD*          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2541            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2542            -rm -rf mnc_test_*
2543    
2544  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2545  makefile:  makefile:
# Line 2077  test ! "x$THISUSER" = x && echo "      -echo Line 2567  test ! "x$THISUSER" = x && echo "      -echo
2567  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2568  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2569    
2570    if test "x$EMBED_SRC" = xt ; then
2571        cat >>$MAKEFILE <<EOF
2572    
2573    decode_files.o : EMBEDDED_FILES.h
2574    
2575    ##  \$(F77FILES)
2576    all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2577            @echo Creating \$@ ...
2578            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2579            -rm -f all_fF.tar.gz
2580            -gzip all_fF.tar
2581    
2582    EMBEDDED_FILES.h : all_fF.tar.gz
2583            @echo Creating \$@ ...
2584            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2585    
2586    EOF
2587    fi
2588    
2589  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2590    
2591  # The normal chain of rules is (  .F - .$FS - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )
# Line 2088  cat >>$MAKEFILE <<EOF Line 2597  cat >>$MAKEFILE <<EOF
2597          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2598  .$FS.o:  .$FS.o:
2599          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2600  .F90.$FS90:  .F.o:
2601          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2602  .$FS90.o:  .F90.o:  
2603          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2604  .c.o:  .c.o:
2605          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2606    
2607  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2608  .F.p:  .F.p:
# Line 2117  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2626  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2626  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2627  for i in $ad_vars ; do  for i in $ad_vars ; do
2628      name=$i      name=$i
2629      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2630      eval $t1      eval $t1
2631      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2632      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2633  done  done
2634    
2635  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
# Line 2137  rm -f ad_files Line 2646  rm -f ad_files
2646  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2647    
2648  # ... AD ...  # ... AD ...
2649  adall: ad_taf  adall: \$(EXE_AD)
2650  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
2651  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2652    
2653  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2654          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2655          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2656          -rm -f ad_config.template          -rm -f ad_config.template
2657          @make \$(F77FILES)          @make \$(F77FILES)
2658          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2659          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS
2660    
2661  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
2662          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2663          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2664    
2665  adtafonly:  adtafonly:
2666          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2667          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2668    
2669  ad_taf: ad_taf_output.o \$(OBJFILES)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2670          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2671    
2672  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.$FS: ad_input_code.$FS
2673          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2674          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2675    
2676  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2677          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
# Line 2175  adtrick: Line 2684  adtrick:
2684    
2685  # ... FTL ...  # ... FTL ...
2686  ftlall: ftl_taf  ftlall: ftl_taf
2687  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
2688  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
2689    
2690  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2691          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2692          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2693          -rm -f ftl_config.template          -rm -f ftl_config.template
2694          @make \$(F77FILES)          @make \$(F77FILES)
2695          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2696          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2697    
2698  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
2699          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2700          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2701    
2702  ftltafonly:  ftltafonly:
2703          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2704          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2705    
2706  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2707          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2708    
2709  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.$FS: ftl_input_code.$FS
2710          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2711          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2712    
2713  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2714          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2715    
2716    
2717  # ... SVD ...  # ... SVD ...
2718  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2719          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2720          @echo "--->>> Do make svdall afterwards to compile. <<<---"          @echo "--->>> Do make svdall afterwards to compile. <<<---"
2721  svdall: svd_touch svd_taf  svdall: svd_touch svd_taf
# Line 2222  svd_touch: Line 2731  svd_touch:
2731          @echo "--->>> Only COMPILE svd code! <<<---"          @echo "--->>> Only COMPILE svd code! <<<---"
2732          @echo "--->>> Assumes you previously <<<---"          @echo "--->>> Assumes you previously <<<---"
2733          @echo "--->>> did make svdtaf        <<<---"          @echo "--->>> did make svdtaf        <<<---"
2734          touch ad_taf_output.f ftl_taf_output.f          touch ad_taf_output.$FS ftl_taf_output.$FS
2735          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.f          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2736          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.f          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2737          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2738          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2739          -rm -f ftl_config.template          -rm -f ftl_config.template

Legend:
Removed from v.1.116  
changed lines
  Added in v.1.169

  ViewVC Help
Powered by ViewVC 1.1.22