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revision 1.167 by jmc, Mon Nov 26 21:39:58 2007 UTC revision 1.192 by jmc, Wed Apr 22 21:03:52 2009 UTC
# Line 611  Usage: "$0" [OPTIONS] Line 611  Usage: "$0" [OPTIONS]
611            set to PATH. i.e. Include files from \$PATH/include, link to libraries            set to PATH. i.e. Include files from \$PATH/include, link to libraries
612            from \$PATH/lib and use binaries from \$PATH/bin.            from \$PATH/lib and use binaries from \$PATH/bin.
613    
614        -omp | --omp
615              Activate OpenMP code + use Compiler option OMPFLAG
616        -omp=OMPFLAG | --omp=OMPFLAG
617              Activate OpenMP code + use Compiler option OMPFLAG
618    
619      -es | --es | -embed-source | --embed-source      -es | --es | -embed-source | --embed-source
620            Embed a tarball containing the full source code            Embed a tarball containing the full source code
621            (including the Makefile, etc.) used to build the            (including the Makefile, etc.) used to build the
# Line 746  void FC_NAMEMANGLE(cloc) ( double *curti Line 751  void FC_NAMEMANGLE(cloc) ( double *curti
751   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
752  }  }
753  EOF  EOF
754      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
755        echo $COMM >> genmake_warnings
756        $COMM >> genmake_warnings 2>&1
757      RET_C=$?      RET_C=$?
758      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
759        program hello        program hello
# Line 805  void FC_NAMEMANGLE(sigreg) (int * aip) Line 812  void FC_NAMEMANGLE(sigreg) (int * aip)
812      return;      return;
813  }  }
814  EOF  EOF
815      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
816        echo $COMM >> genmake_warnings
817        $COMM >> genmake_warnings 2>&1
818      RET_C=$?      RET_C=$?
819      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
820        program hello        program hello
# Line 853  void FC_NAMEMANGLE(setrlstk) () Line 862  void FC_NAMEMANGLE(setrlstk) ()
862      return;      return;
863  }  }
864  EOF  EOF
865      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
866        echo $COMM >> genmake_warnings
867        $COMM >> genmake_warnings 2>&1
868      RET_C=$?      RET_C=$?
869      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
870        program hello        program hello
# Line 897  void FC_NAMEMANGLE(tfsize) ( int *nbyte Line 908  void FC_NAMEMANGLE(tfsize) ( int *nbyte
908          *nbyte = -1;          *nbyte = -1;
909  }  }
910  EOF  EOF
911      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
912        echo $COMM >> genmake_warnings
913        $COMM >> genmake_tc.log 2>&1
914      RET_C=$?      RET_C=$?
915      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
916        program hello        program hello
# Line 1038  INCLUDES="-I. $INCLUDES" Line 1051  INCLUDES="-I. $INCLUDES"
1051  FFLAGS=  FFLAGS=
1052  FOPTIM=  FOPTIM=
1053  FEXTRAFLAGS=  FEXTRAFLAGS=
1054    USE_EXTENDED_SRC=
1055    EXTENDED_SRC_FLAG=
1056  CFLAGS=  CFLAGS=
1057  KFLAGS1=  KFLAGS1=
1058  KFLAGS2=  KFLAGS2=
# Line 1048  NOOPTFILES= Line 1063  NOOPTFILES=
1063  NOOPTFLAGS=  NOOPTFLAGS=
1064  MPI=  MPI=
1065  MPIPATH=  MPIPATH=
1066    OMP=
1067    OMPFLAG=
1068  TS=  TS=
1069  PAPIS=  PAPIS=
1070  PCLS=  PCLS=
# Line 1115  TAMC_EXTRA= Line 1132  TAMC_EXTRA=
1132    
1133  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1134  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1135  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"
1136    
1137  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1138  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
# Line 1156  else Line 1173  else
1173  fi  fi
1174    
1175  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1176  #parse_options  #parse_options
1177  ac_prev=  ac_prev=
1178  for ac_option in "$@" ; do  for ac_option in "$@" ; do
# Line 1316  for ac_option in "$@" ; do Line 1324  for ac_option in "$@" ; do
1324              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1325              MPI=true ;;              MPI=true ;;
1326                    
1327  #       -jam | --jam)          -omp | --omp)
1328  #           JAM=1 ;;              OMP=true ;;
1329  #       -nojam | --nojam)          -omp=* | --omp=*)
1330  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1331                OMP=true ;;
1332                    
1333          -ds | --ds)          -ds | --ds)
1334              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 1394  if test ! -d ${ROOTDIR} ; then Line 1403  if test ! -d ${ROOTDIR} ; then
1403  fi  fi
1404    
1405  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1406  if test -f "${ROOTDIR}/doc/tag-index" ; then  version_file="${ROOTDIR}/doc/tag-index"
1407      THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`  if test -f $version_file ; then
1408        THISVER=`grep '^checkpoint' $version_file | head -1`
1409    #-  remove ./BUILD_INFO.h file if older than version_file
1410        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1411            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1412            rm -f ./BUILD_INFO.h
1413        fi
1414  fi  fi
1415    
1416  if test "x$MAKEFILE" = x ; then  if test "x$MAKEFILE" = x ; then
# Line 1551  if test ! "x$MPI" = x ; then Line 1566  if test ! "x$MPI" = x ; then
1566        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1567        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1568  fi  fi
1569    if test ! "x$OMP" = x ; then
1570          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1571          FFLAGS="$FFLAGS $OMPFLAG"
1572          F90FLAGS="$F90FLAGS $OMPFLAG"
1573          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1574    fi
1575    
1576  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1577        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
# Line 1632  if test ! "x$GSL" = x ; then Line 1653  if test ! "x$GSL" = x ; then
1653        INCLUDES="$INCLUDES $GSLINC"        INCLUDES="$INCLUDES $GSLINC"
1654        LIBS="$LIBS $GSLLIB"        LIBS="$LIBS $GSLLIB"
1655  fi  fi
1656    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1657    if test ! "x$USE_EXTENDED_SRC" = x ; then
1658          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1659          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1660    fi
1661    
1662  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1663  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
# Line 1754  fi Line 1780  fi
1780    
1781    
1782  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1783  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1784  for d in $MODS ; do  for d in $MODS ; do
1785      if test ! -d $d ; then      if test ! -d $d ; then
1786          echo          echo
1787          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1788          exit 1          exit 1
1789      else      else
1790          printf " $d"          printf "$d "
1791          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1792          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1793      fi      fi
# Line 2208  fi Line 2234  fi
2234    
2235  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2236  #  compiler.  #  compiler.
2237  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2238      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2239  fi  fi
2240  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2241  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2242      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2243      for j in $list_files ; do      for j in $list_files ; do
2244          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2245      done      done
2246  done  done
2247  if test ! "x"$FS = "x.f" ; then  if test ! "x"$FS = "x.f" ; then
2248      cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f      cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2249      mv -f ad_files_f ad_files      mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2250  fi  fi
2251    
2252  echo  echo
# Line 2278  if test ! -r ".links.tmp/foo" ; then Line 2304  if test ! -r ".links.tmp/foo" ; then
2304      exit 1      exit 1
2305  fi  fi
2306  rm -f .links.tmp/foo  rm -f .links.tmp/foo
2307    
2308    if test "x$OPENAD" != x ; then
2309        OAD_DONT_COMPILE="/dev/null"
2310        OAD_DONT_TRANSFORM="/dev/null"
2311        OAD_KEEP_ORIGINAL="/dev/null"
2312        OAD_CB2M_FILES="/dev/null"
2313        echo "  looking for dontCompile file:  "
2314        for i in "." $MODS ; do
2315            if test -r $i"/dontCompile" ; then
2316                OAD_DONT_COMPILE=$i"/dontCompile"
2317                echo "     found $OAD_DONT_COMPILE"
2318                break
2319            fi
2320        done
2321        echo "  looking for dontTransform file:  "
2322        for i in "." $MODS ; do
2323            if test -r $i"/dontTransform" ; then
2324                OAD_DONT_TRANSFORM=$i"/dontTransform"
2325                echo "     found $OAD_DONT_TRANSFORM"
2326                break
2327            fi
2328        done
2329        echo "  looking for keepOriginal file:  "
2330        for i in "." $MODS ; do
2331            if test -r $i"/keepOriginal" ; then
2332                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2333                echo "     found $OAD_KEEP_ORIGINAL"
2334                break
2335            fi
2336        done
2337        echo "  looking for cb2mFiles:  "
2338        for i in "." $MODS ; do
2339            if test -r $i"/cb2mFiles" ; then
2340                OAD_CB2M_FILES=$i"/cb2mFiles"
2341                echo "     found $OAD_CB2M_FILES"
2342                break
2343            fi
2344        done
2345        echo "   OpenAD exceptions:  "
2346    fi
2347    
2348  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2349  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2350  printf 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2351  printf 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2352  printf 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2353  printf 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2354  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2355    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2356  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2357  for d in $alldirs ; do  for d in $alldirs ; do
2358      deplist=      deplist=
2359      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2360      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2361        if test "x$OPENAD" != x ; then
2362            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2363        fi
2364      for sf in $sfiles ; do      for sf in $sfiles ; do
2365          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2366              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
# Line 2324  for d in $alldirs ; do Line 2395  for d in $alldirs ; do
2395                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2396                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2397                      case $extn in                      case $extn in
2398                          F)                        F)
2399                              echo    " \\"  >> srclist.inc                          echo    " \\"  >> F77srclist.tmp
2400                              printf " $sf" >> srclist.inc                          printf " $sf" >> F77srclist.tmp
2401                              ;;                          if test "x$OPENAD" != x ; then
2402                          F90)                              basename=${sf%%.F}
2403                              echo    " \\"  >> f90srclist.inc                              isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2404                              printf " $sf" >> f90srclist.inc                              if test -z "$isAD" ; then
2405                              ;;                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2406                          c)                                  if test -z "$toBeIgnored" ; then
2407                              echo    " \\"  >> csrclist.inc                                      echo    " \\"  >> nonADF77srclist.tmp
2408                              printf " $sf" >> csrclist.inc                                      printf " $sf" >> nonADF77srclist.tmp
2409                              ;;                                  else
2410                          h)                                      echo "    not to be compiled   :  $sf"
2411                              echo    " \\"  >> hlist.inc                                  fi
2412                              printf " $sf" >> hlist.inc                              else # file is initially listed as an AD file we want to exclude it
2413                              ;;                                   # or we want to retain the untransformed version
2414                          flow)                                  notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2415                              echo    " \\"  >> ad_flow_files.inc                                  untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2416                              printf " $sf" >> ad_flow_files.inc                                  if test -n "$notToBeTransformed"; then
2417                              ;;                                      echo "    not to be transformed:  $sf"
2418                      esac                                  fi
2419                  fi                                  if test -n "$untransformedVersionToBeKept" ; then
2420                                        echo "    original to be kept  :  $sf"
2421                                    fi    
2422                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2423                                        echo    " \\"  >> nonADF77srclist.tmp
2424                                        printf " $sf" >> nonADF77srclist.tmp
2425                                    fi
2426                                fi
2427                            fi
2428                            ;;
2429                        F90)
2430                            echo    " \\"  >> F90srclist.tmp
2431                            printf " $sf" >> F90srclist.tmp
2432                            ;;
2433                        c)
2434                            echo    " \\"  >> csrclist.tmp
2435                            printf " $sf" >> csrclist.tmp
2436                            ;;
2437                        h)
2438                            echo    " \\"  >> hsrclist.tmp
2439                            printf " $sf" >> hsrclist.tmp
2440                            ;;
2441                        flow)
2442                            echo    " \\"  >> ad_flow_files.tmp
2443                            printf " $sf" >> ad_flow_files.tmp
2444                            ;;
2445                       esac
2446                    fi
2447              fi              fi
2448          fi          fi
2449      done      done
2450      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2451          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2452            echo "" >> srclinks.tmp
2453          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2454          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2455          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2456    # This may happen when make thinks that a header file has to be "remade"
2457    # because a module it depends on has changed.  In this case we do nothing.
2458            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2459          fi
2460      fi      fi
2461  done  done
2462  rm -rf .links.tmp  rm -rf .links.tmp
2463  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2464  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2465  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2466  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2467  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2468    echo "" >> ad_flow_files.tmp
2469    
2470    CMDLINE=$0
2471    for xx in "$@" ; do nw=`echo $xx | wc -w`
2472        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2473                            else CMDLINE="$CMDLINE '$xx'" ; fi
2474    done
2475    
2476  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2477      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
# Line 2372  echo "#    $MACHINE" >> $MAKEFILE Line 2482  echo "#    $MACHINE" >> $MAKEFILE
2482  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2483  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2484  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2485  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2486  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2487  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2488    
# Line 2429  else Line 2539  else
2539      echo "EMBEDDED_FILES = " >>$MAKEFILE      echo "EMBEDDED_FILES = " >>$MAKEFILE
2540  fi  fi
2541    
 #  Note: figure out some way to add Hyades JAM libraries here  
2542  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2543  # Unix ln (link)  # Unix ln (link)
2544  LN = ${LN}  LN = ${LN}
# Line 2461  FOPTIM = ${FOPTIM} Line 2570  FOPTIM = ${FOPTIM}
2570  # Optim./debug for FC  # Optim./debug for FC
2571  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2572  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2573    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2574  # Flags for CC  # Flags for CC
2575  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2576  # Files that should not be optimized  # Files that should not be optimized
# Line 2473  MAKEFILE=${MAKEFILE} Line 2583  MAKEFILE=${MAKEFILE}
2583    
2584  EOF  EOF
2585    
2586  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2587  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2588  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2589  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2590  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2591    cat ad_flow_files.tmp   >> $MAKEFILE
2592    
2593    rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2594    
2595  echo >> $MAKEFILE  echo >> $MAKEFILE
2596  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  
2597  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE  # add definitions for preprocessed sources
2598  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  # and note that not all systems allow case sensitive extensions
2599    # hence the $FS and $FS90 here.
2600    # for fixed format f90 files we use ff90 or FF90 resp
2601    # but these are not expected to be the original source files
2602    
2603    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2604    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2605    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2606    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2607  echo >> $MAKEFILE  echo >> $MAKEFILE
2608  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2609  echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
 rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
 rm -f ad_flow_files.inc  
2610    
2611  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2612    
2613  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2614  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2615          @echo Creating \$@ ...          @echo Creating \$@ ...
2616          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2617  depend:  depend:
2618          @make links          @make links
2619          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2620          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2621          -rm -f makedepend.out          -rm -f makedepend.out
2622    
# Line 2506  libmitgcmuv.a: \$(OBJFILES) Line 2626  libmitgcmuv.a: \$(OBJFILES)
2626          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
2627          ar d   libmitgcmuv.a main.o          ar d   libmitgcmuv.a main.o
2628    
2629  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2630    
2631  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2632    
2633  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2634          @printf 'running ... '          @printf 'running ... '
# Line 2517  output.txt: \$(EXECUTABLE) Line 2637  output.txt: \$(EXECUTABLE)
2637  clean:  clean:
2638          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2639          -rm -rf *.o          -rm -rf *.o
2640          -rm -rf *.$FS          -rm -rf *.$FS *.flowdir
2641            -rm -rf *.f$FS90 *_mod.h *_mod.F90 *.FF90 *.mod-whirl ad_input*
2642            -rm -rf temp.sed
2643  Clean:  Clean:
2644          @make clean          @make clean
2645          @make cleanlinks          @make cleanlinks
2646          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES)
2647          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log f90mkdepend.log *.bak
2648          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2649  CLEAN:  CLEAN:
2650          @make Clean          @make Clean
# Line 2539  makefile: Line 2661  makefile:
2661  cleanlinks:  cleanlinks:
2662          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2663    
2664  # Special targets (SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2665  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2666          @echo Creating \$@ ...          @echo Creating \$@ ...
2667          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
# Line 2564  if test "x$EMBED_SRC" = xt ; then Line 2686  if test "x$EMBED_SRC" = xt ; then
2686    
2687  decode_files.o : EMBEDDED_FILES.h  decode_files.o : EMBEDDED_FILES.h
2688    
2689  ##  \$(F77FILES)  ##  \$(F77_PP_SRC_FILES)
2690  all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile  all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2691          @echo Creating \$@ ...          @echo Creating \$@ ...
2692          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2693          -rm -f all_fF.tar.gz          -rm -f all_fF.tar.gz
2694          -gzip all_fF.tar          -gzip all_fF.tar
2695    
# Line 2589  cat >>$MAKEFILE <<EOF Line 2711  cat >>$MAKEFILE <<EOF
2711          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2712  .$FS.o:  .$FS.o:
2713          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2714  .F90.o:    .F90.$FS90:
2715            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2716    .FF90.f$FS90:
2717            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2718    .$FS90.o:
2719          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2720    .f$FS90.o:
2721            cp \$< \$(basename  \$<).f90
2722            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2723  .c.o:  .c.o:
2724          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2725    .flow.flowdir:
2726            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2727    
2728  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2729  .F.p:  .F.p:
# Line 2600  cat >>$MAKEFILE <<EOF Line 2731  cat >>$MAKEFILE <<EOF
2731  .p.$FS:  .p.$FS:
2732          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2733    
2734    EOF
2735    
2736  #=========================================  #=========================================
2737  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2738    #===  for TAMC/TAF  ======================
2739    
2740    if test "x$OPENAD" = x ; then
2741    
2742    cat >>$MAKEFILE <<EOF
2743    
2744  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2745  TAF            = ${TAF}  TAF            = ${TAF}
# Line 2625  done Line 2763  done
2763  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2764  echo >> $MAKEFILE  echo >> $MAKEFILE
2765  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2766  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2767  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2768      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2769      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2770  done  done
2771  echo >> $MAKEFILE  echo >> $MAKEFILE
2772  rm -f ad_files  rm -f adSrcFiles.tmp
2773    
2774  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2775    
# Line 2640  adall: \$(EXE_AD) Line 2778  adall: \$(EXE_AD)
2778  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
2779  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
2780    
2781  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
2782          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2783          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2784          -rm -f ad_config.template          -rm -f ad_config.template
2785          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2786          @make \$(AD_FLOW_FILES)          @make \$(FLOFILES)
2787          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS          cat \$(FLOFILES) \$(AD_FILES) > ad_input_code.$FS
2788    
2789  ad_taf_output.$FS: ad_input_code.$FS  ad_taf_output.$FS: ad_input_code.$FS
2790          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2791            ls -l ad_input_code_ad.$FS
2792          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2793    
2794  adtafonly:  adtafonly:
2795          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2796            ls -l ad_input_code_ad.$FS
2797          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2798    
2799  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
# Line 2677  ftlall: ftl_taf Line 2817  ftlall: ftl_taf
2817  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
2818  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
2819    
2820  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2821          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2822          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2823          -rm -f ftl_config.template          -rm -f ftl_config.template
2824          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2825          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2826          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2827    
2828  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_taf_output.$FS: ftl_input_code.$FS
2829          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2830            ls -l ftl_input_code_ftl.$FS
2831          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2832    
2833  ftltafonly:  ftltafonly:
2834          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2835            ls -l ftl_input_code_ftl.$FS
2836          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2837    
2838  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
# Line 2728  svd_touch: Line 2870  svd_touch:
2870          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2871          -rm -f ftl_config.template          -rm -f ftl_config.template
2872    
2873  #=========================================  EOF
2874    
2875    fi
2876    
2877    #===  for OpenAD  ========================
2878    
2879    if test "x$OPENAD" != x ; then
2880    
2881    # ============ begin OpenAD specific section ==============
2882    
2883    cat >>$MAKEFILE <<EOF
2884    
2885    # all the source files linked from the various locations:
2886    ALL_LINKED_FILES= \
2887    \$(F77_SRC_FILES) \
2888    \$(C_SRC_FILES) \
2889    \$(H_SRC_FILES) \
2890    \$(F90_SRC_FILES) \
2891    \$(SPECIAL_FILES)
2892    
2893    ifndef OPENADROOT
2894      \$(error "Error:  environment variable OPENADROOT not defined!")
2895    endif
2896    
2897    ifndef XAIFSCHEMAROOT
2898      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2899    endif
2900    
2901    ifndef XAIFBOOSTERROOT
2902      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2903    endif
2904    
2905  EOF  EOF
2906    
2907    echo "  Add the source list for common block to module conversion "
2908    echo >> $MAKEFILE
2909    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2910    for i in `cat ${OAD_CB2M_FILES}` ; do
2911      echo    " \\" >> $MAKEFILE
2912      printf " $i" >> $MAKEFILE
2913    done
2914    echo >> $MAKEFILE
2915    
2916    echo "  Add the source list for AD code generation"
2917    echo >> $MAKEFILE
2918    printf "AD_FILES = " >> $MAKEFILE
2919    for i in `cat ${OAD_CB2M_FILES}` ; do
2920      echo    " \\" >> $MAKEFILE
2921      printf " ${i}_mod.f$FS90" >> $MAKEFILE
2922    done
2923    AD_FILES=`cat adSrcFiles.tmp`
2924    for i in $AD_FILES ; do
2925      basename=${i%%.f}
2926      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
2927      if test -z "$toBeIgnored" ; then
2928        echo    " \\" >> $MAKEFILE
2929        printf " $i" >> $MAKEFILE
2930      fi
2931    done
2932    echo >> $MAKEFILE
2933    rm -f adSrcFiles.tmp
2934    
2935    cat >>$MAKEFILE <<EOF
2936    
2937    adAll: \$(EXE_AD)
2938    .PHONY: adAll
2939    
2940    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
2941    
2942    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
2943    
2944    .PHONY: adDepend
2945    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
2946            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2947            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2948            -rm -f makedepend.out
2949    
2950    OPENAD_SUPPORT_F90_SRC_FILES = \
2951    w2f__types.F90 \
2952    OAD_active.F90 \
2953    OAD_cp.F90 \
2954    OAD_rev.F90 \
2955    OAD_tape.F90        
2956    
2957    OPENAD_SUPPORT_C_SRC_FILES = \
2958    iaddr.c \
2959    timeRatio.c
2960    
2961    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
2962            cat \$^ > \$@
2963    
2964    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
2965            cat \$^ > \$@
2966    
2967    f95_test.out: f95_test_mods.f90 f95_test.f90
2968            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
2969            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
2970    
2971    AD_OBJ_FILES=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) all_mods.xb.x2w.w2f.pp.o  ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.o \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
2972    
2973    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(AD_OBJ_FILES)
2974            @echo Creating \$@ ...
2975            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES) \$(LIBS)
2976    
2977    # makefile debug rule
2978    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
2979    .PHONY: openad
2980    
2981    # create the module files
2982    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
2983            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
2984    
2985    # create the header files
2986    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
2987            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
2988    
2989    # change everybody else to use the new module files:
2990    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
2991            ../OAD_support/cb2mUseModules.bash $< ${MPI}
2992    
2993    # makefile debug rule
2994    small_f: \$(CB2M_F90_PP_SRC_FILES)
2995    .PHONY: small_f
2996    
2997    ad_output.txt: \$(EXE_AD)
2998            @printf 'linking data files ... '
2999            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3000            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3001            @printf 'running ... '
3002            @./\$(EXE_AD) > \$@
3003    
3004    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3005    ad_input_code.f$FS90: ../OAD_support/maxMinDefs.f \$(CB2M_AD_FILES)
3006            cat \$^ > \$@
3007    
3008    # strip all comments and blanks to reduce
3009    # the file size in order to reduce perl's memory requirements
3010    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3011            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3012    
3013    # mfef90 preprocessing
3014    # expand statement functions
3015    # expose mfef90 specific substring handling
3016    # add the w2f__types module
3017    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3018            ./mfef90 -r8 -z -F -N132 \$<
3019            mv \$<.B \$(basename \$<).B
3020            ./whirl2f -openad \$(basename \$<).B
3021            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3022    
3023    # canonicalizer
3024    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3025            ./preProcess.py -H -S \$< -o \$@
3026    
3027    # F -> WHIRL
3028    # note that the canonicalized version cuts off at col 72
3029    # doing this also for string constants which is ok as long
3030    # as we are in fixed mode and cut of exactly there.
3031    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3032    # characters respectively.
3033    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3034            ./mfef90 -r8 -z -F \$<
3035            mv \$<.B \$@
3036    
3037    # WHIRL -> XAIF
3038    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3039            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3040    
3041    # XAIF -> XAIF'
3042    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3043            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3044    
3045    # XAIF' -> WHIRL'
3046    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3047            ./xaif2whirl --debug 1 --structured ad_input_code_sf.w2f.pre.B \$<
3048    
3049    # WHIRL' -> F'
3050    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3051            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3052    
3053    # insert template directives
3054    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3055            ../OAD_support/insertTemplateDir.bash \$< \$@
3056    
3057    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3058    # postprocess F'
3059    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3060            ./postProcess.py -m r -i ../OAD_support/ad_inline.f -o \$@ \$<
3061    
3062    # extract all transformed modules
3063    all_mods.xb.x2w.w2f.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3064            cat \$< | sed -n '/MODULE /,/END MODULE/p' > \$@
3065    
3066    # remove the transformed globals module from the
3067    # transformed ad_input_code file
3068    # and remove for now the duplicate variables
3069    # and fix 2 data statements
3070    ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3071            cat \$< | sed '/MODULE /,/END MODULE/d' | sed '/^      INTEGER(w2f__i4) DOLOOP_UB/d' > \$@
3072    
3073    # setup some links
3074    %.xsd:
3075            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3076    
3077    mfef90:
3078            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3079    
3080    # link the support files:
3081    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3082            \$(LN) ../OAD_support/\$@ .
3083    
3084    whirl2xaif xaif2whirl:
3085            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3086    
3087    preProcess.py postProcess.py:
3088            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3089    
3090    whirl2f whirl2f_be:
3091            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3092    
3093    oadDriver:
3094            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3095    
3096    # ============ end OpenAD specific section ==============
3097    
3098    EOF
3099    
3100    fi
3101    
3102    #=========================================
3103    
3104  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3105      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3106  fi  fi

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