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revision 1.153 by edhill, Fri Jul 14 16:39:39 2006 UTC revision 1.167 by jmc, Mon Nov 26 21:39:58 2007 UTC
# Line 325  find_possible_configs()  { Line 325  find_possible_configs()  {
325    
326      #================================================================      #================================================================
327      #  look for possible C compilers      #  look for possible C compilers
328      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329      p_CC=      p_CC=
330      for c in $tmp ; do      for c in $tmp ; do
331          rm -f ./genmake_hello.c  ./genmake_hello          rm -f ./genmake_hello.c  ./genmake_hello
# Line 364  EOF Line 364  EOF
364    
365      #================================================================      #================================================================
366      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
367      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 gfortran"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 601  Usage: "$0" [OPTIONS] Line 601  Usage: "$0" [OPTIONS]
601    
602      -gsl | --gsl      -gsl | --gsl
603            Use GSL to control floating point rounding and precision            Use GSL to control floating point rounding and precision
604        -devel | --devel
605              Add additional warning and debugging flags for development
606    
607      -mpi | --mpi      -mpi | --mpi
608            Include MPI header files and link to MPI libraries            Include MPI header files and link to MPI libraries
# Line 754  EOF Line 756  EOF
756        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
757        end        end
758  EOF  EOF
759      $FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
760        echo $COMM >> genmake_warnings
761        $COMM >> genmake_warnings 2>&1
762      RET_F=$?      RET_F=$?
763      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
764      RETVAL=$?      RETVAL=$?
# Line 946  EOF Line 950  EOF
950      RET_CPP=f      RET_CPP=f
951      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
952      echo "$COMM" >> genmake_tnc.log      echo "$COMM" >> genmake_tnc.log
953      $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t      eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
954      if test "x$RET_CPP" = xf ; then      if test "x$RET_CPP" = xf ; then
955          echo "  WARNING: CPP failed to pre-process the netcdf test." \          echo "  WARNING: CPP failed to pre-process the netcdf test." \
956              >> genmake_tnc.log              >> genmake_tnc.log
# Line 983  EOF Line 987  EOF
987          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
988              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
989              HAVE_NETCDF=t              HAVE_NETCDF=t
990            else
991            # try again with "-lnetcdff" added to the libs
992                echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
993                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
994                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
995                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
996                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
997                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
998                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
999                RET_COMPILE=$?
1000                cat genmake_tnc.log >> genmake_warnings
1001                if test "x$RET_COMPILE" = x0 ; then
1002                    LIBS="$LIBS -lnetcdff -lnetcdf"
1003                    HAVE_NETCDF=t
1004                fi
1005          fi          fi
1006      fi      fi
1007      rm -f genmake_tnc*      rm -f genmake_tnc*
# Line 1018  OPTFILE= Line 1037  OPTFILE=
1037  INCLUDES="-I. $INCLUDES"  INCLUDES="-I. $INCLUDES"
1038  FFLAGS=  FFLAGS=
1039  FOPTIM=  FOPTIM=
1040    FEXTRAFLAGS=
1041  CFLAGS=  CFLAGS=
1042  KFLAGS1=  KFLAGS1=
1043  KFLAGS2=  KFLAGS2=
# Line 1036  PAPI= Line 1056  PAPI=
1056  PCL=  PCL=
1057  HPMT=  HPMT=
1058  GSL=  GSL=
1059    DEVEL=
1060  HAVE_TEST_L=  HAVE_TEST_L=
1061    
1062  # DEFINES checked by test compilation or command-line  # DEFINES checked by test compilation or command-line
# Line 1094  TAMC_EXTRA= Line 1115  TAMC_EXTRA=
1115    
1116  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1117  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1118  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"
1119    
1120  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1121  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1122  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1123  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1124  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
# Line 1124  EOF Line 1145  EOF
1145    
1146  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1147  gm_local="genmake_local"  gm_local="genmake_local"
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
1148  printf "  getting local config information:  "  printf "  getting local config information:  "
1149  if test -f $gm_local ; then  if test -f $gm_local ; then
1150      echo "using $gm_local"      echo "using $gm_local"
# Line 1292  for ac_option in "$@" ; do Line 1307  for ac_option in "$@" ; do
1307          -gsl | --gsl)          -gsl | --gsl)
1308              GSL=true ;;              GSL=true ;;
1309    
1310            -devel | --devel)
1311                DEVEL=true ;;
1312    
1313          -mpi | --mpi)          -mpi | --mpi)
1314              MPI=true ;;              MPI=true ;;
1315          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
# Line 1340  done Line 1358  done
1358  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1359      echo      echo
1360      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1361      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1362      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1363      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/devel_HOWTO/"
1364      echo      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1365      echo "  for directions on how to setup and use the new \"genmake2\" input"      echo "WARNING: ignore \"./.genmakerc\" and continue."
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
1366      echo      echo
1367  fi  fi
1368    
1369  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
1370  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1371      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1372      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1373          ROOTDIR=".."          ROOTDIR=".."
1374      else      else
1375          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
# Line 1542  if test ! "x$TS" = x ; then Line 1559  if test ! "x$TS" = x ; then
1559        else        else
1560              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1561        fi        fi
1562          PACKAGES="$PACKAGES showflops"
1563  fi  fi
1564  if test ! "x$PAPIS" = x ; then  if test ! "x$PAPIS" = x ; then
1565        echo "  Turning on PAPI flop summary per timestep"        echo "  Turning on PAPI flop summary per timestep"
# Line 1553  if test ! "x$PAPIS" = x ; then Line 1571  if test ! "x$PAPIS" = x ; then
1571        fi        fi
1572        INCLUDES="$INCLUDES $PAPIINC"        INCLUDES="$INCLUDES $PAPIINC"
1573        LIBS="$LIBS $PAPILIB"        LIBS="$LIBS $PAPILIB"
1574          PACKAGES="$PACKAGES showflops"
1575  fi  fi
1576  if test ! "x$PCLS" = x ; then  if test ! "x$PCLS" = x ; then
1577        echo "  Turning on PCL counter summary per timestep"        echo "  Turning on PCL counter summary per timestep"
# Line 1564  if test ! "x$PCLS" = x ; then Line 1583  if test ! "x$PCLS" = x ; then
1583        fi        fi
1584        INCLUDES="$INCLUDES $PCLINC"        INCLUDES="$INCLUDES $PCLINC"
1585        LIBS="$LIBS $PCLLIB"        LIBS="$LIBS $PCLLIB"
1586          PACKAGES="$PACKAGES showflops"
1587  fi  fi
1588  if test ! "x$PAPI" = x ; then  if test ! "x$PAPI" = x ; then
1589        if test ! "x$PAPIS" = x ; then        if test ! "x$PAPIS" = x ; then
# Line 1818  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1838  if test -r $ROOTDIR"/eesupp/src/Makefile
1838      fi      fi
1839  fi  fi
1840    
1841  #same for exch2  #same for pkg/exch2 and pkg/regrid
1842  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
1843      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1844      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
1845      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1
1846      if test "x${RETVAL}" = x0 ; then          RETVAL=$?
1847          rm -f make_exch2.errors          if test "x${RETVAL}" = x0 ; then
1848      else              rm -f make_${pdir}.errors
1849          echo "Error: problem encountered while building source files in exch2:"          else
1850          cat make_exch2.errors 1>&2              echo "Error: problem encountered while building source files in pkg/${pdir}:"
1851          exit 1              cat make_${pdir}.errors 1>&2
1852                exit 1
1853            fi
1854      fi      fi
1855  fi  done
1856    
1857  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1858  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
# Line 1941  done Line 1963  done
1963  rm -f ./.tmp_pack  rm -f ./.tmp_pack
1964  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1965    
1966  #  Check availability of NetCDF and then either build the MNC template  #  Check for package MNC: if NetCDF is available, then build the MNC
1967  #  files or delete mnc from the list of available packages.  #  template files ; otherwise, delete mnc from the list of packages.
1968  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1969  RETVAL=$?  RETVAL=$?
1970  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
# Line 1976  EOF Line 1998  EOF
1998      fi      fi
1999  fi  fi
2000    
2001    #  Check for package PROFILES: if NetCDF is not available,
2002    #  then delete profiles from the list of available packages.
2003    echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1
2004    RETVAL=$?
2005    if test "x$RETVAL" = x0 ; then
2006        if test "x$HAVE_NETCDF" != xt ; then
2007            cat <<EOF
2008    
2009    *********************************************************************
2010    WARNING: the "profiles" package was enabled but tests failed to
2011      compile NetCDF applications.  Please check that:
2012    
2013      1) NetCDF is correctly installed for this compiler and
2014      2) the LIBS variable (within the "optfile") specifies the correct
2015           NetCDF library to link against.
2016    
2017      Due to this failure, the "profiles" package is now DISABLED.
2018    *********************************************************************
2019    
2020    EOF
2021            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2022            DISABLE="$DISABLE profiles"
2023        fi
2024    fi
2025    
2026  echo "  applying package dependency rules"  echo "  applying package dependency rules"
2027  ck=  ck=
2028  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
2029      i=0      i=0
2030      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2031      rtot=$nname      rtot=$nname
2032      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2033    
2034          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2035          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 2016  while test "x$ck" != xtt ; do Line 2063  while test "x$ck" != xtt ; do
2063    
2064          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2065          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2066                #echo "   " $pname ": need to add :" $dname
2067              in_dis="f"              in_dis="f"
2068              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2069                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 2205  if test ! "x$DIVA" = x ; then Line 2253  if test ! "x$DIVA" = x ; then
2253          perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h          perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2254      else      else
2255          echo " We cannot create a copy of mpif.h!"          echo " We cannot create a copy of mpif.h!"
2256          exit -1  #       exit -1
2257      fi      fi
2258  fi  fi
2259    
# Line 2408  INCLUDES = ${INCLUDES} Line 2456  INCLUDES = ${INCLUDES}
2456  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2457  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2458  # Optim./debug for FC  # Optim./debug for FC
2459  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2460  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2461  # Optim./debug for FC  # Optim./debug for FC
2462  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
# Line 2456  lib: libmitgcmuv.a Line 2504  lib: libmitgcmuv.a
2504    
2505  libmitgcmuv.a: \$(OBJFILES)  libmitgcmuv.a: \$(OBJFILES)
2506          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
2507            ar d   libmitgcmuv.a main.o
2508    
2509  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
2510    
# Line 2466  output.txt: \$(EXECUTABLE) Line 2515  output.txt: \$(EXECUTABLE)
2515          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2516    
2517  clean:  clean:
2518          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2519            -rm -rf *.o
2520            -rm -rf *.$FS
2521  Clean:  Clean:
2522          @make clean          @make clean
2523          @make cleanlinks          @make cleanlinks
2524          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES)
2525          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
2526            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2527  CLEAN:  CLEAN:
2528          @make Clean          @make Clean
2529          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2530          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2531          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2532          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2533            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2534          -rm -rf mnc_test_*          -rm -rf mnc_test_*
2535    
2536  #eh3 Makefile: makefile  #eh3 Makefile: makefile
# Line 2536  cat >>$MAKEFILE <<EOF Line 2589  cat >>$MAKEFILE <<EOF
2589          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2590  .$FS.o:  .$FS.o:
2591          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2592  .F90.$FS90:  .F90.o:  
         \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@  
 .$FS90.o:  
2593          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2594  .c.o:  .c.o:
2595          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<

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