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revision 1.11.2.6 by edhill, Thu Oct 2 14:42:04 2003 UTC revision 1.164 by ce107, Tue Jul 31 22:27:01 2007 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24      if test "x${RETVAL}" = x0 ; then  }
25          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"  
26          exit 99  # Search for particular CPP #cmds associated with MPI
27      fi  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1  test_for_mpi_in_cpp_eeoptions() {
29        cpp_options=$1
30        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38    }
39    
40    # Search for particular string in a file. Return 1 if detected, 0 if not
41    # usage: test_for_string_in_file file string
42    test_for_string_in_file() {
43        file=$1
44        strng=$2
45        grep -i "$strng" $file > /dev/null 2>&1
46      RETVAL=$?      RETVAL=$?
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
49            grep -i "$strng" $file
50          exit 99          exit 99
51      fi      fi
52      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
53  }  }
54    
55  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
# Line 46  expand_pkg_groups() { Line 59  expand_pkg_groups() {
59      PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"      PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"
60      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
61          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
62          cat ./p1.tmp | awk '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
63          matched=0          matched=0
64          for i in $PACKAGES ; do          for i in $PACKAGES ; do
65              line=`grep $i ./p2.tmp`              line=`grep "^ *$i" ./p2.tmp`
66              RETVAL=$?              RETVAL=$?
67              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
68                  matched=1                  matched=1
69                  replace=`echo $line | awk '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
70                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with: $replace"
71                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
72              else              else
# Line 62  expand_pkg_groups() { Line 75  expand_pkg_groups() {
75          done          done
76          PACKAGES=$new_packages          PACKAGES=$new_packages
77          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
78            return $matched
79      else      else
80          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
81      fi      fi
82  }  }
83    
84    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
85    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
86    check_for_broken_Ff()  {
87        #  Do we have defaults for $FS and/or $FS90 ?
88        tfs=f
89        tfs9=f90
90        if test "x$FS" != x ; then
91            tfs="$FS"
92        fi
93        if test "x$FS90" != x ; then
94            tfs9="$FS90"
95        fi
96    
97        #  First check the ability to create a *.F/.f pair.
98        cat <<EOF >> genmake_hello.F
99          program hello
100          write(*,*) 'hi'
101          stop
102          end
103    EOF
104        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
105        RETVAL=$?
106        if test "x$RETVAL" != x0 ; then
107            if test "x$FS" = x ; then
108                FS='for'
109                FS90='fr9'
110                check_for_broken_Ff
111            else
112                cat <<EOF 2>&1
113    ERROR: Your file system cannot distinguish between *.F and *.f files
114      (fails the "cp" test) and this program cannot find a suitable
115      replacement extension.  Please try a different build environment or
116      contact the <MITgcm-support@mitgcm.org> list for help.
117    
118    EOF
119                exit -1
120            fi
121            return
122        fi
123        rm -f genmake_hello.*
124    
125        #  Check the ability of ${MAKE} and ${LN} to use the current set
126        #  of extensions.
127        cat <<EOF >> genmake_hello.F
128          program hello
129          write(*,*) 'hi'
130          stop
131          end
132    EOF
133        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
134        cat <<EOF >> $MAKEFILE
135    .SUFFIXES:
136    .SUFFIXES: .$tfs .F
137    .F.$tfs:
138            $LN \$< \$@
139    EOF
140        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
141        RETVAL=$?
142        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
143            if test "x$FS" = x ; then
144                FS='for'
145                FS90='fr9'
146                check_for_broken_Ff
147            else
148                cat <<EOF 2>&1
149    ERROR: Your file system cannot distinguish between *.F and *.f files
150      (fails the "make/ln" test) and this program cannot find a suitable
151      replacement extension.  Please try a different build environment or
152      contact the <MITgcm-support@mitgcm.org> list for help.
153    
154    EOF
155                exit -1
156                return
157            fi
158        fi
159        rm -f genmake_hello.* $MAKEFILE
160        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
161    
162        #  If we make it here, use the extensions
163        FS=$tfs
164        FS90=$tfs9
165        return
166    }
167    
168    
169    look_for_makedepend()  {
170    
171        #  The "original" makedepend is part of the Imake system that is
172        #  most often distributed with XFree86 or with an XFree86 source
173        #  package.  As a result, many machines (eg. generic Linux) do not
174        #  have a system-default "makedepend" available.  For those
175        #  systems, we have two fall-back options:
176        #
177        #    1) a makedepend implementation shipped with the cyrus-imapd
178        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
179        #
180        #    2) a known-buggy xmakedpend shell script
181        #
182        #  So the choices are, in order:
183        #
184        #    1) use the user-specified program
185        #    2) use a system-wide default
186        #    3) locally build and use the cyrus implementation
187        #    4) fall back to the buggy local xmakedpend script
188        #
189        if test "x${MAKEDEPEND}" = x ; then
190            which makedepend > /dev/null 2>&1
191            RV0=$?
192            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
193            #  echo 'MAKEFILE="'$MAKEFILE'"'
194            cat <<EOF >> $MAKEFILE
195    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
196    #
197    #   Some "makedepend" implementations will die if they cannot
198    #   find a Makefile -- so this file is here to gives them an
199    #   empty one to find and parse.
200    EOF
201            cat <<EOF >> genmake_tc.f
202          program test
203          write(*,*) 'test'
204          stop
205          end
206    EOF
207            makedepend genmake_tc.f > /dev/null 2>&1
208            RV1=$?
209            test -f $MAKEFILE  &&  rm -f $MAKEFILE
210            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
211            if test "x${RV0}${RV1}" = x00 ; then
212                MAKEDEPEND=makedepend
213            else
214                echo "    a system-default makedepend was not found."
215                
216                #  Try to build the cyrus implementation
217                build_cyrus_makedepend
218                RETVAL=$?
219                if test "x$RETVAL" != x0 ; then
220                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
221                fi
222                rm -f ./genmake_cy_md
223            fi
224        else
225            #  echo "MAKEDEPEND=${MAKEDEPEND}"
226            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
227            RETVAL=$?
228            if test x"$RETVAL" = x0 ; then
229                build_cyrus_makedepend
230            fi
231        fi
232    }
233    
234    
235    build_cyrus_makedepend()  {
236        rm -f ./genmake_cy_md
237        (
238            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
239                &&  ./configure > /dev/null 2>&1  \
240                &&  make > /dev/null 2>&1
241            if test -x ./makedepend.exe ; then
242                $LN ./makedepend.exe ./makedepend
243            fi
244            ./makedepend ifparser.c > /dev/null 2>&1  \
245                &&  echo "true"
246        ) > ./genmake_cy_md
247        grep true ./genmake_cy_md > /dev/null 2>&1
248        RETVAL=$?
249        rm -f ./genmake_cy_md
250        if test "x$RETVAL" = x0 ; then
251            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
252            return 0
253        else
254            echo "WARNING: unable to build cyrus-imapd-makedepend"
255            return 1
256        fi
257    }
258    
259    
260    build_embed_encode()
261    {
262        printf "  building the embed-encode utility...  "
263        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265                echo
266                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267                echo
268                EMBED_SRC=f
269                return 1
270            fi
271            clist="cc gcc c89 $CC"
272            for ic in $clist ; do
273                comm="$ic -o encode_files encode_files.c"
274                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275                RETVAL=$?
276                if test "x$RETVAL" = x0 ; then
277                    echo "OK"
278                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279                    return 0
280                fi
281            done
282            echo
283            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
284            echo "      so it has been disabled"
285            echo
286            EMBED_SRC=f
287            return 1
288        fi
289        echo "OK"
290        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291    }
292    
293    
294  # Guess possible config options for this host  # Guess possible config options for this host
295  find_possible_configs()  {  find_possible_configs()  {
296    
297      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
298      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
299      PLATFORM=`echo $tmp2 | sed -e 's/i[3-6]86/ia32/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
300        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
301        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
302        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
303        PLATFORM=$tmp3
304        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
305      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
306      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
307            
308      echo "test" > test      echo "test" > test
309      ln -s ./test link      ln -s ./test link
# Line 103  find_possible_configs()  { Line 321  find_possible_configs()  {
321          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
322      fi      fi
323    
324      # look for possible fortran compilers      look_for_makedepend
325      tmp="$MITGCM_FC $FC g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"  
326        #================================================================
327        #  look for possible C compilers
328        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329        p_CC=
330        for c in $tmp ; do
331            rm -f ./genmake_hello.c  ./genmake_hello
332            cat >> genmake_hello.c << EOF
333    #include <stdio.h>
334    int main(int argc, char **argv) {
335      printf("Hello!\n");
336      return 0;
337    }
338    EOF
339            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
340            RETVAL=$?
341            if test "x${RETVAL}" = x0 ; then
342                p_CC="$p_CC $c"
343            fi
344        done
345        rm -f ./genmake_hello.c ./genmake_hello
346        if test "x${p_CC}" = x ; then
347            cat 1>&2 <<EOF
348    
349    Error: No C compilers were found in your path.  Please specify one using:
350    
351        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
352        2) the CC or MITGCM_CC environment variables.
353    
354    EOF
355            exit 1
356        else
357            echo "  The possible C compilers found in your path are:"
358            echo "   "$p_CC
359            if test "x$CC" = x ; then
360                CC=`echo $p_CC | $AWK '{print $1}'`
361                echo "  Setting C compiler to: "$CC
362            fi
363        fi
364    
365        #================================================================
366        #  look for possible FORTRAN compilers
367        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 121  EOF Line 381  EOF
381              p_FC="$p_FC $c"              p_FC="$p_FC $c"
382          fi          fi
383      done      done
384        rm -f ./hello.f ./hello
385      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
386          cat 1>&2 <<EOF          cat 1>&2 <<EOF
387    
# Line 128  Error: No Fortran compilers were found i Line 389  Error: No Fortran compilers were found i
389    
390      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
391      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
392      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
393    
394  EOF  EOF
395          exit 1          exit 1
396      else      else
397          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
398          echo "   "$p_FC          echo "   "$p_FC
         if test "x$FC" = x ; then  
             FC=`echo $p_FC | awk '{print $1}'`  
         fi  
399      fi      fi
400    
401      for i in $p_FC ; do      #  Use the first of the compilers found in the current PATH
402          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i      #  that has a correctly-named optfile
403          if test -r $p_OF ; then      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
404              OPTFILE=$p_OF          for i in $p_FC ; do
405              echo "  The options file:  $p_OF"              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
406              echo "    appears to match so we'll use it."              if test -r $OPTFILE ; then
407              break                  echo "  Setting OPTFILE to: "$OPTFILE
408          fi                  break
409      done              fi
410            done
411        fi
412    
413        if test "x$OPTFILE" = x ; then
414            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
415            if test ! -r $OPTFILE ; then
416                 echo "  I looked for the file "$OPTFILE" but did not find it"
417            fi
418        fi
419    #    echo "  The options file:  $p_OF"
420    #    echo "    appears to match so we'll use it."
421    #   for i in $p_FC ; do
422    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
423    #if test -r $p_OF ; then
424    #    OPTFILE=$p_OF
425    #    echo "  The options file:  $p_OF"
426    #    echo "    appears to match so we'll use it."
427    #    break
428    #fi
429    #   done
430      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
431          cat 1>&2 <<EOF          cat 1>&2 <<EOF
432    
# Line 202  get_pdepend_list()  { Line 480  get_pdepend_list()  {
480      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
481      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
482      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
483          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
484          > ./.pd_tmp          > ./.pd_tmp
485      source ./.pd_tmp      . ./.pd_tmp
486      rm -f ./.pd_tmp      rm -f ./.pd_tmp
487    
488      echo -n "PNAME = "${}      printf "PNAME = "${}
489  }  }
490    
491    
492  #  Explain usage  #  Explain usage
493  usage()  {  usage()  {
494      echo  cat <<EOF
495      echo "Usage: "$0" [OPTIONS]"  
496      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
497      echo    where [OPTIONS] can be:
498      echo "    -help | --help | -h | --h"  
499      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
500      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
501      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
502      echo "    -pdepend NAME | --pdepend NAME"      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
503      echo "      -pdepend=NAME | --pdepend=NAME"        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
504      echo "    -pdefault NAME | --pdefault NAME"            Use "NAME" as the adoptfile.  By default, the file at
505      echo "      -pdefault=NAME | --pdefault=NAME"            "tools/adjoint_options/adjoint_default" will be used.
506      echo "    -make NAME | -m NAME"  
507      echo "      --make=NAME | -m=NAME"      -nooptfile | --nooptfile
508      echo "    -makefile NAME | -mf NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
509      echo "      --makefile=NAME | -mf=NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
510      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"            Use "NAME" as the optfile.  By default, an attempt will be
511      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            made to find an appropriate "standard" optfile in the
512      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"            tools/build_options/ directory.
513      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"  
514      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"      -pdepend NAME | --pdepend NAME
515      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"        -pdepend=NAME | --pdepend=NAME
516      echo "    -disable NAME | --disable NAME"            Get package dependency information from "NAME".
517      echo "      -disable=NAME | --disable=NAME"  
518      echo "    -enable NAME | --enable NAME"      -pdefault NAME | --pdefault NAME
519      echo "      -enable=NAME | --enable=NAME"        -pdefault=NAME | --pdefault=NAME
520      echo "    -noopt NAME | --noopt NAME"            Get the default package list from "NAME".
521      echo "      -noopt=NAME | --noopt=NAME"  
522  #    echo "    -cpp NAME | --cpp NAME"      -make NAME | -m NAME
523  #    echo "      -cpp=NAME | --cpp=NAME"        --make=NAME | -m=NAME
524      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"            Use "NAME" for the MAKE program. The default is "make" but
525      echo "      -fc=NAME | --fc=NAME"            many platforms, "gmake" is the preferred choice.
526      echo "    -[no]ieee | --[no]ieee"  
527      echo "    -[no]mpi | --[no]mpi"      -makefile NAME | -mf NAME
528      echo "    -[no]jam | --[no]jam"        --makefile=NAME | -mf=NAME
529      echo            Call the makefile "NAME".  The default is "Makefile".
530      echo "  and NAME is a string such as:"  
531      echo      -makedepend NAME | -md NAME
532      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"        --makedepend=NAME | -md=NAME
533      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"            Use "NAME" for the MAKEDEPEND program.
534      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"  
535      echo      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
536      echo "  which, depending upon your shell, may need to be single-quoted"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
537      echo "  if it contains spaces, dashes, or other special characters."            Specify the location of the MITgcm ROOTDIR as "NAME".
538              By default, genamke will try to find the location by
539              looking in parent directories (up to the 5th parent).
540    
541        -mods NAME | --mods NAME | -mo NAME | --mo NAME
542          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
543              Here, "NAME" specifies a list of directories that are
544              used for additional source code.  Files found in the
545              "mods list" are given preference over files of the same
546              name found elsewhere.
547    
548        -disable NAME | --disable NAME
549          -disable=NAME | --disable=NAME
550              Here "NAME" specifies a list of packages that we don't
551              want to use.  If this violates package dependencies,
552              genamke will exit with an error message.
553    
554        -enable NAME | --enable NAME
555          -enable=NAME | --enable=NAME
556              Here "NAME" specifies a list of packages that we wish
557              to specifically enable.  If this violates package
558              dependencies, genamke will exit with an error message.
559    
560        -standarddirs NAME | --standarddirs NAME
561          -standarddirs=NAME | --standarddirs=NAME
562              Here, "NAME" specifies a list of directories to be
563              used as the "standard" code.
564    
565        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
566          -fc=NAME | --fc=NAME
567              Use "NAME" as the fortran compiler.  By default, genmake
568              will search for a working compiler by trying a list of
569              "usual suspects" such as g77, f77, etc.
570    
571        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
572              Use "NAME" as the C compiler.  By default, genmake
573              will search for a working compiler by trying a list of
574              "usual suspects" such as gcc, c89, cc, etc.
575    
576        -[no]ieee | --[no]ieee
577              Do or don't use IEEE numerics.  Note that this option
578              *only* works if it is supported by the OPTFILE that
579              is being used.
580    
581        -ignoretime | -ignore_time | --ignoretime | --ignore_time
582              Ignore all the "wall clock" routines entirely.  This will
583              not in any way hurt the model results -- it simply means
584              that the code that checks how long the model spends in
585              various routines will give junk values.
586    
587        -ts | --ts
588              Produce timing information per timestep
589        -papis | --papis
590              Produce summary MFlop/s (and IPC) with PAPI per timestep
591        -pcls | --pcls
592              Produce summary MFlop/s etc. with PCL per timestep
593        -foolad | --foolad
594              Fool the AD code generator
595        -papi | --papi
596              Performance analysis with PAPI
597        -pcl | --pcl
598              Performance analysis with PCL
599        -hpmt | --hpmt
600              Performance analysis with the HPM Toolkit
601    
602        -gsl | --gsl
603              Use GSL to control floating point rounding and precision
604        -devel | --devel
605              Add additional warning and debugging flags for development
606    
607        -mpi | --mpi
608              Include MPI header files and link to MPI libraries
609        -mpi=PATH | --mpi=PATH
610              Include MPI header files and link to MPI libraries using MPI_ROOT
611              set to PATH. i.e. Include files from \$PATH/include, link to libraries
612              from \$PATH/lib and use binaries from \$PATH/bin.
613    
614        -es | --es | -embed-source | --embed-source
615              Embed a tarball containing the full source code
616              (including the Makefile, etc.) used to build the
617              executable [off by default]
618    
619        -bash NAME
620              Explicitly specify the Bourne or BASH shell to use
621    
622      While it is most often a single word, the "NAME" variables specified
623      above can in many cases be a space-delimited string such as:
624    
625        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
626        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
627        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
628    
629      which, depending upon your shell, may need to be single-quoted.
630    
631      For more detailed genmake documentation, please see:
632    
633        http://mitgcm.org/devel_HOWTO/
634    
635    EOF
636    
637      exit 1      exit 1
638  }  }
639    
640  #eh3 # This is the generic configuration.  #  Build a CPP macro to automate calling C routines from FORTRAN
641  #eh3 set LN         = ( 'ln -s' )  get_fortran_c_namemangling()  {
642  #eh3 set CPP        = ( '/lib/cpp -P' )  
643  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
644  #eh3 set KPP        = (  )      if test ! "x$FC_NAMEMANGLE" = x ; then
645  #eh3 set FC         = ( 'f77' )          return 0
646  #eh3 set LINK       = $FC      fi
647  #eh3 set MAKEDEPEND = ( 'makedepend' )  
648  #eh3 set INCLUDES   = ( -I. )      default_nm="#define FC_NAMEMANGLE(X) X ## _"
649  #eh3 set FFLAGS     = (  )      
650  #eh3 set FOPTIM     = (  )      cat > genmake_test.c <<EOF
651  #eh3 set CFLAGS     = (  )  void tcall( char * string ) { tsub( string ); }
652  #eh3 set KFLAGS1    = (  )  EOF
653  #eh3 set KFLAGS2    = (  )      $MAKE genmake_test.o >> genmake_warnings 2>&1
654  #eh3 set LIBS       = (  )      RETVAL=$?
655  #eh3 set KPPFILES   = (  )      if test "x$RETVAL" != x0 ; then
656  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )          FC_NAMEMANGLE=$default_nm
657  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )          cat <<EOF>> genmake_errors
658    
659    WARNING: C test compile fails
660    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
661    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
662    EOF
663            return 1
664        fi
665        c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
666        RETVAL=$?
667        if test "x$RETVAL" != x0 ; then
668            FC_NAMEMANGLE=$default_nm
669            cat <<EOF>> genmake_warnings
670    
671    WARNING: The "nm" command failed.
672    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
673    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
674    EOF
675            return 1
676        fi
677        cat > genmake_tcomp.$FS <<EOF
678          subroutine tcall( string )
679          character*(*) string
680          call tsub( string )
681          end
682    EOF
683        $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
684        RETVAL=$?
685        if test "x$RETVAL" != x0 ; then
686            FC_NAMEMANGLE=$default_nm
687            cat <<EOF>> genmake_warnings
688    
689    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
690    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
691    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
692    EOF
693            return 1
694        fi
695        f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
696        RETVAL=$?
697        if test "x$RETVAL" != x0 ; then
698            FC_NAMEMANGLE=$default_nm
699            cat <<EOF>> genmake_warnings
700    
701    WARNING: The "nm" command failed.
702    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
703    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
704    EOF
705            return 1
706        fi
707    
708        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
709        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
710        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
711        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
712    
713        nmangle="X"
714        if test "x$c_a" != "x$f_a" ; then
715            comm="echo x$f_a | sed -e 's|x$c_a||'"
716            a=`eval $comm`
717            nmangle="$a ## $nmangle"
718        fi
719        if test "x$c_b" != "x$f_b" ; then
720            comm="echo x$f_b | sed -e 's|x$c_b||'"
721            b=`eval $comm`
722            nmangle="$nmangle ## $b"
723        fi
724    
725        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
726    
727        #  cleanup the testing files
728        rm -f genmake_tcomp.* genmake_test.*
729    }
730    
731    
732    check_HAVE_CLOC()  {
733        get_fortran_c_namemangling
734        cat <<EOF > genmake_tc_1.c
735    $FC_NAMEMANGLE
736    #include <stdio.h>
737    #include <stdlib.h>
738    #include <unistd.h>
739    #include <assert.h>
740    #include <sys/time.h>
741    void FC_NAMEMANGLE(cloc) ( double *curtim )
742    {
743     struct timeval tv1;
744     gettimeofday(&tv1 , (void *)NULL );
745     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
746     *curtim = *curtim/1.E6;
747    }
748    EOF
749        make genmake_tc_1.o >> genmake_warnings 2>&1
750        RET_C=$?
751        cat <<EOF > genmake_tc_2.$FS
752          program hello
753          REAL*8 wtime
754          external cloc
755          call cloc(wtime)
756          print *," HELLO WORLD", wtime
757          end
758    EOF
759        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
760        echo $COMM >> genmake_warnings
761        $COMM >> genmake_warnings 2>&1
762        RET_F=$?
763        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
764        RETVAL=$?
765        if test "x$RETVAL" = x0 ; then
766            HAVE_CLOC=t
767            DEFINES="$DEFINES -DHAVE_CLOC"
768        fi
769        rm -f genmake_tc*
770    }
771    
772    
773    check_HAVE_SIGREG()  {
774        if test ! "x$HAVE_SIGREG" = x ; then
775            return
776        fi
777        get_fortran_c_namemangling
778        cat <<EOF > genmake_tc_1.c
779    $FC_NAMEMANGLE
780    #include <stdlib.h>
781    #include <stdio.h>
782    #include <signal.h>
783    #include <errno.h>
784    #include <ucontext.h>
785    
786    int * ip;
787    
788    static void killhandler(
789        unsigned int sn, siginfo_t  si, struct ucontext *sc )
790    {
791        *ip = *ip + 1;
792        return;
793    }
794    
795    void FC_NAMEMANGLE(sigreg) (int * aip)
796    {
797        struct sigaction s;
798        ip = aip;
799        s.sa_flags = SA_SIGINFO;
800        s.sa_sigaction = (void *)killhandler;
801        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
802            printf("Sigaction returned error = %d\n", errno);
803            exit(0);
804        }
805        return;
806    }
807    EOF
808        make genmake_tc_1.o >> genmake_warnings 2>&1
809        RET_C=$?
810        cat <<EOF > genmake_tc_2.$FS
811          program hello
812          integer anint
813          common /iv/ anint
814          external sigreg
815          call sigreg(anint)
816          end
817    EOF
818        echo >> genmake_warnings
819        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
820        cat genmake_tc_2.$FS >> genmake_warnings
821        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
822        echo $COMM >> genmake_warnings
823        $COMM >> genmake_warnings 2>&1
824        RETVAL=$?
825        if test "x$RETVAL" = x0 ; then
826            HAVE_SIGREG=t
827            DEFINES="$DEFINES -DHAVE_SIGREG"
828        fi
829        rm -f genmake_tc*
830    }
831    
832    
833    check_HAVE_SETRLSTK()  {
834        if test "x$HAVE_SETRLSTK" = xt ; then
835            DEFINES="$DEFINES -DHAVE_SETRLSTK"
836            return
837        fi  
838        if test ! "x$HAVE_SETRLSTK" = x ; then
839            return
840        fi
841        get_fortran_c_namemangling
842        cat <<EOF > genmake_tc_1.c
843    $FC_NAMEMANGLE
844    #include <sys/time.h>
845    #include <sys/resource.h>
846    #include <unistd.h>
847    void FC_NAMEMANGLE(setrlstk) ()
848    {
849        struct rlimit rls;
850        rls.rlim_cur = RLIM_INFINITY;
851        rls.rlim_max = RLIM_INFINITY;
852        setrlimit(RLIMIT_STACK, &rls);
853        return;
854    }
855    EOF
856        make genmake_tc_1.o >> genmake_warnings 2>&1
857        RET_C=$?
858        cat <<EOF > genmake_tc_2.$FS
859          program hello
860          external setrlstk
861          call setrlstk()
862          end
863    EOF
864        echo >> genmake_warnings
865        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
866        cat genmake_tc_2.$FS >> genmake_warnings
867        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
868        echo $COMM >> genmake_warnings
869        $COMM >> genmake_warnings 2>&1
870        RETVAL=$?
871        if test "x$RETVAL" = x0 ; then
872            HAVE_SETRLSTK=t
873            DEFINES="$DEFINES -DHAVE_SETRLSTK"
874        fi
875        rm -f genmake_tc*
876    }
877    
878    
879    check_HAVE_STAT()  {
880        get_fortran_c_namemangling
881        cat <<EOF > genmake_tc_1.c
882    $FC_NAMEMANGLE
883    #include <stdio.h>
884    #include <stdlib.h>
885    #include <unistd.h>
886    #include <sys/stat.h>
887    #include <sys/types.h>
888    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
889    {
890        char name[512];
891        struct stat astat;
892    
893        name[0] = 'a'; name[1] = '\0';
894        if (! stat(name, &astat))
895            *nbyte = (int)(astat.st_size);
896        else
897            *nbyte = -1;
898    }
899    EOF
900        make genmake_tc_1.o >> genmake_tc.log 2>&1
901        RET_C=$?
902        cat <<EOF > genmake_tc_2.$FS
903          program hello
904          integer nbyte
905          call tfsize(nbyte)
906          print *," HELLO WORLD", nbyte
907          end
908    EOF
909        echo >> genmake_warnings
910        echo "running: check_HAVE_STAT()" >> genmake_warnings
911        cat genmake_tc_2.$FS >> genmake_warnings
912        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
913        echo $COMM >> genmake_warnings
914        $COMM >> genmake_tc.log 2>&1
915        RETVAL=$?
916        if test "x$RETVAL" = x0 ; then
917            HAVE_STAT=t
918            DEFINES="$DEFINES -DHAVE_STAT"
919        fi
920        rm -f genmake_tc*
921    }
922    
923    
924    check_netcdf_libs()  {
925        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
926            return
927        fi
928        echo >> genmake_warnings
929        echo "running: check_netcdf_libs()" >> genmake_warnings
930        cat <<EOF > genmake_tnc.F
931          program fgennc
932    #include "netcdf.inc"
933    EOF
934        if test ! "x$MPI" = x ; then
935            echo '#include "mpif.h"' >> genmake_tnc.F
936        fi
937        cat <<EOF >> genmake_tnc.F
938          integer iret, ncid, xid
939          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
940          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
941          iret = nf_def_dim(ncid, 'X', 11, xid)
942          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
943          iret = nf_close(ncid)
944          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
945          end
946    EOF
947        echo "===  genmake_tnc.F  ===" > genmake_tnc.log
948        cat genmake_tnc.F >> genmake_tnc.log
949        echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
950        RET_CPP=f
951        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
952        echo "$COMM" >> genmake_tnc.log
953        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
954        if test "x$RET_CPP" = xf ; then
955            echo "  WARNING: CPP failed to pre-process the netcdf test." \
956                >> genmake_tnc.log
957            echo "    Please check that \$INCLUDES is properly set." \
958                >> genmake_tnc.log
959        fi
960        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
961        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
962        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
963            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
964        RET_COMPILE=$?
965        cat genmake_tnc.log >> genmake_warnings
966    
967        #EH3  Remove test program execution for machines that either disallow
968        #EH3  execution or cannot support it (eg. cross-compilers)
969        #EH3
970        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
971        #EH3 RETVAL=$?
972        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
973    
974        if test "x$RET_COMPILE" = x0 ; then
975            HAVE_NETCDF=t
976        else
977            # try again with "-lnetcdf" added to the libs
978            echo "try again with added '-lnetcdf'" > genmake_tnc.log
979            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
980            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
981            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
982            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
983                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
984                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
985            RET_COMPILE=$?
986            cat genmake_tnc.log >> genmake_warnings
987            if test "x$RET_COMPILE" = x0 ; then
988                LIBS="$LIBS -lnetcdf"
989                HAVE_NETCDF=t
990            else
991            # try again with "-lnetcdff" added to the libs
992                echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
993                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
994                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
995                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
996                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
997                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
998                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
999                RET_COMPILE=$?
1000                cat genmake_tnc.log >> genmake_warnings
1001                if test "x$RET_COMPILE" = x0 ; then
1002                    LIBS="$LIBS -lnetcdff -lnetcdf"
1003                    HAVE_NETCDF=t
1004                fi
1005            fi
1006        fi
1007        rm -f genmake_tnc*
1008    }
1009    
1010    
1011    
1012    ###############################################################################
1013    #   Sequential part of script starts here
1014    ###############################################################################
1015    
1016  #  Set defaults here  #  Set defaults here
1017  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 286  PLATFORM= Line 1020  PLATFORM=
1020  LN=  LN=
1021  S64=  S64=
1022  KPP=  KPP=
1023  FC=  #FC=
1024    #CC=gcc
1025    #CPP=
1026  LINK=  LINK=
1027  DEFINES="-DWORDLENGTH=4"  DEFINES=
1028  PACKAGES=  PACKAGES=
1029  ENABLE=  ENABLE=
1030  DISABLE=  DISABLE=
1031  MAKEFILE=  # MAKEFILE=
1032  MAKEDEPEND=  # MAKEDEPEND=
1033  PDEPEND=  PDEPEND=
1034  DUMPSTATE=t  DUMPSTATE=t
1035  PDEFAULT=  PDEFAULT=
1036  OPTFILE=  OPTFILE=
1037  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1038  FFLAGS=  FFLAGS=
1039  FOPTIM=  FOPTIM=
1040  CFLAGS=  CFLAGS=
1041  KFLAGS1=  KFLAGS1=
1042  KFLAGS2=  KFLAGS2=
1043    #LDADD=
1044  LIBS=  LIBS=
1045  KPPFILES=  KPPFILES=
1046  NOOPTFILES=  NOOPTFILES=
1047  NOOPTFLAGS=  NOOPTFLAGS=
1048    MPI=
1049    MPIPATH=
1050    TS=
1051    PAPIS=
1052    PCLS=
1053    FOOLAD=
1054    PAPI=
1055    PCL=
1056    HPMT=
1057    GSL=
1058    DEVEL=
1059    HAVE_TEST_L=
1060    
1061    # DEFINES checked by test compilation or command-line
1062    HAVE_SYSTEM=
1063    HAVE_FDATE=
1064    FC_NAMEMANGLE=
1065    HAVE_CLOC=
1066    # HAVE_SETRLSTK=
1067    HAVE_STAT=
1068    HAVE_NETCDF=
1069    HAVE_ETIME=
1070    IGNORE_TIME=
1071    
1072  MODS=  MODS=
1073  TOOLSDIR=  TOOLSDIR=
1074  SOURCEDIRS=  SOURCEDIRS=
1075  INCLUDEDIRS=  INCLUDEDIRS=
1076    STANDARDDIRS="USE_THE_DEFAULT"
1077    
1078    G2ARGS=
1079    BASH=
1080  PWD=`pwd`  PWD=`pwd`
1081  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1082  THISHOSTNAME=`hostname`  test "x$AWK" = x   &&  AWK=awk
1083    EMBED_SRC=
1084    THISHOST=`hostname`
1085  THISCWD=`pwd`  THISCWD=`pwd`
1086  THISDATE=`date`  THISDATE=`date`
1087    THISUSER=`echo $USER`
1088    THISVER=
1089  MACHINE=`uname -a`  MACHINE=`uname -a`
1090  EXECUTABLE=  EXECUTABLE=
1091  EXEHOOK=  EXEHOOK=
1092  EXEDIR=  EXEDIR=
1093    PACKAGES_CONF=
1094    IEEE=
1095    if test "x$MITGCM_IEEE" != x ; then
1096        IEEE=$MITGCM_IEEE
1097    fi
1098    FS=
1099    FS90=
1100    
1101    AUTODIFF_PKG_USED=f
1102    AD_OPTFILE=
1103    TAF=
1104    AD_TAF_FLAGS=
1105    FTL_TAF_FLAGS=
1106    SVD_TAF_FLAGS=
1107    TAF_EXTRA=
1108    TAMC=
1109    AD_TAMC_FLAGS=
1110    FTL_TAF_FLAGS=
1111    SVD_TAMC_FLAGS=
1112    TAMC_EXTRA=
1113    
1114    
1115  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1116  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1117  gm_s2="FC IEEE MPI JAM DUMPSTATE"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"
1118    
1119  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1120  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
1121  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1122  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1123  gm_s6="EXECUTABLE EXEHOOK EXEDIR"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1124    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
1125    
1126  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6"  #  The following are all related to adjoint/tangent-linear stuff
1127    gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1128    gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1129    gm_s12="TAF_EXTRA TAMC_EXTRA"
1130    
1131    gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
1132    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1133    
1134    cat <<EOF
1135    
1136    GENMAKE :
1137    
1138    A program for GENerating MAKEfiles for the MITgcm project.  For a
1139    quick list of options, use "genmake -h" or for more detail see:
1140    
1141      http://mitgcm.org/devel_HOWTO/
1142    
1143    EOF
1144    
 echo  
1145  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1146  gm_local="./gm_local"  gm_local="genmake_local"
1147  echo -n "  getting local config information:  "  for i in . $MODS ; do
1148  if test -e $gm_local ; then      if test -r $i/$gm_local ; then
1149            . $i/$gm_local
1150            break
1151        fi
1152    done
1153    printf "  getting local config information:  "
1154    if test -f $gm_local ; then
1155      echo "using $gm_local"      echo "using $gm_local"
1156      source $gm_local      . $gm_local
1157      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
1158      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
1159  else  else
1160      echo "none found"      echo "none found"
1161  fi  fi
1162    
1163  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1164  #OPTIONS=  #OPTIONS=
1165  #n=0  #n=0
1166  #for i ; do  #for i ; do
# Line 361  fi Line 1171  fi
1171  #   n=$(( $n + 1 ))  #   n=$(( $n + 1 ))
1172  #done  #done
1173  #parse_options  #parse_options
   
1174  ac_prev=  ac_prev=
1175  for ac_option ; do  for ac_option in "$@" ; do
1176    
1177        G2ARGS="$G2ARGS \"$ac_option\""
1178    
1179      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1180      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 386  for ac_option ; do Line 1197  for ac_option ; do
1197          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1198              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1199                    
1200            -adoptfile | --adoptfile | -adof | --adof)
1201                ac_prev=AD_OPTFILE ;;
1202            -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1203                AD_OPTFILE=$ac_optarg ;;
1204            
1205          -pdepend | --pdepend)          -pdepend | --pdepend)
1206              ac_prev=PDEPEND ;;              ac_prev=PDEPEND ;;
1207          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
# Line 401  for ac_option ; do Line 1217  for ac_option ; do
1217          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1218              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1219                    
1220            -bash | --bash)
1221                ac_prev=BASH ;;
1222            -bash=* | --bash=*)
1223                BASH=$ac_optarg ;;
1224            
1225            -makedepend | --makedepend | -md | --md)
1226                ac_prev=MAKEDEPEND ;;
1227            -makedepend=* | --makedepend=* | -md=* | --md=*)
1228                MAKEDEPEND=$ac_optarg ;;
1229            
1230          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
1231              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1232          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
1233              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1234                    
1235          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1236              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
1237          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
1238              PLATFORM=$ac_optarg ;;              echo
1239                usage
1240                ;;
1241                    
1242          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1243              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 431  for ac_option ; do Line 1259  for ac_option ; do
1259          -enable=* | --enable=*)          -enable=* | --enable=*)
1260              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1261                    
1262          -noopt | --noopt)          -standarddirs | --standarddirs)
1263              ac_prev=NOOPT ;;              ac_prev=STANDARDDIRS ;;
1264          -noopt=* | --noopt=*)          -standarddirs=* | --standarddirs=*)
1265              NOOPT=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
1266            
1267  #           -cpp | --cpp)  #           -cpp | --cpp)
1268  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1269  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1270  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1271                        
1272            -cc | --cc)
1273                ac_prev=CC ;;
1274            -cc=* | --cc=*)
1275                CC=$ac_optarg ;;
1276            
1277          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1278              ac_prev=FC ;;              ac_prev=FC ;;
1279          -fc=* | --fc=*)          -fc=* | --fc=*)
1280              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1281                    
1282            -fs | --fs)
1283                ac_prev=FS ;;
1284            -fs=* | --fs=*)
1285                FS=$ac_optarg ;;
1286            
1287            -fs90 | --fs90)
1288                ac_prev=FS90 ;;
1289            -fs90=* | --fs90=*)
1290                FS90=$ac_optarg ;;
1291            
1292          -ieee | --ieee)          -ieee | --ieee)
1293              IEEE=1 ;;              IEEE=true ;;
1294          -noieee | --noieee)          -noieee | --noieee)
1295              IEEE=0 ;;              IEEE= ;;
1296            
1297            -ts | --ts)
1298                TS=true ;;
1299            -papis | --papis)
1300                PAPIS=true ;;
1301            -pcls | --pcls)
1302                PCLS=true ;;
1303            -foolad | --foolad)
1304                FOOLAD=true ;;
1305            -papi | --papi)
1306                PAPI=true ;;
1307            -pcl | --pcl)
1308                PCL=true ;;
1309            -hpmt | --hpmt)
1310                HPMT=true ;;
1311    
1312            -gsl | --gsl)
1313                GSL=true ;;
1314    
1315            -devel | --devel)
1316                DEVEL=true ;;
1317    
1318          -mpi | --mpi)          -mpi | --mpi)
1319              MPI=1 ;;              MPI=true ;;
1320          -nompi | --nompi)          -mpi=* | --mpi=*)
1321              MPI=0 ;;              MPIPATH=$ac_optarg
1322                        MPI=true ;;
1323          -jam | --jam)          
1324              JAM=1 ;;  #       -jam | --jam)
1325          -nojam | --nojam)  #           JAM=1 ;;
1326              JAM=0 ;;  #       -nojam | --nojam)
1327    #           JAM=0 ;;
1328                    
1329          -ds | --ds)          -ds | --ds)
1330              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1331                    
1332            -taf_extra | --taf_extra)
1333                ac_prev=TAF_EXTRA ;;
1334            -taf_extra=* | --taf_extra=*)
1335                TAF_EXTRA=$ac_optarg ;;
1336    
1337            -tamc_extra | --tamc_extra)
1338                ac_prev=TAMC_EXTRA ;;
1339            -tamc_extra=* | --tamc_extra=*)
1340                TAMC_EXTRA=$ac_optarg ;;
1341            
1342            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1343                IGNORE_TIME="-DIGNORE_TIME" ;;
1344    
1345            -es | --es | -embed-source | --embed-source)
1346                EMBED_SRC=t ;;
1347    
1348          -*)          -*)
1349              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1350              usage              usage
# Line 478  for ac_option ; do Line 1359  for ac_option ; do
1359            
1360  done  done
1361    
1362    
1363    if test -f ./.genmakerc ; then
1364        echo
1365        echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1366        echo "  file.  This file format is no longer supported.  For directions on"
1367        echo "  how to setup and use the new \"genmake2\" script, please see:"
1368        echo "    http://mitgcm.org/devel_HOWTO/"
1369        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1370        echo "WARNING: ignore \"./.genmakerc\" and continue."
1371        echo
1372    fi
1373    
1374    #  Find the MITgcm ${ROOTDIR}
1375  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1376      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1377        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1378          ROOTDIR=".."          ROOTDIR=".."
1379      else      else
1380          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1381              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1382                  ROOTDIR=$d                  ROOTDIR=$d
1383                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1384                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1385                  break                  break
1386              fi              fi
# Line 503  if test ! -d ${ROOTDIR} ; then Line 1398  if test ! -d ${ROOTDIR} ; then
1398      exit 1      exit 1
1399  fi  fi
1400    
1401    #  Find the MITgcm ${THISVER}
1402    if test -f "${ROOTDIR}/doc/tag-index" ; then
1403        THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`
1404    fi
1405    
1406    if test "x$MAKEFILE" = x ; then
1407        MAKEFILE="Makefile"
1408    fi
1409    
1410  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1411  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1412      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 516  fi Line 1420  fi
1420  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
1421      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1422          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
1423          source "$OPTFILE"          . "$OPTFILE"
1424          RETVAL=$?          RETVAL=$?
1425          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1426              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1427              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1428              exit 1              exit 1
1429          fi          fi
1430          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" != xf ; then
1431              cp -f $OPTFILE "gm_optfile"              cp -f $OPTFILE "genmake_optfile"
1432          fi          fi
1433      else      else
1434          echo "Error: can't read OPTFILE=\"$OPTFILE\""          echo "Error: can't read OPTFILE=\"$OPTFILE\""
# Line 532  if test "x$OPTFILE" != xNONE ; then Line 1436  if test "x$OPTFILE" != xNONE ; then
1436      fi      fi
1437  fi  fi
1438    
1439  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  echo "  getting AD_OPTFILE information:  "
1440  #  and abort!  if test "x${AD_OPTFILE}" = x ; then
1441        if test "x$MITGCM_AD_OF" = x ; then
1442            AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1443        else
1444            AD_OPTFILE=$MITGCM_AD_OF
1445        fi
1446    fi
1447    if test "x${AD_OPTFILE}" != xNONE ; then
1448        if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1449            echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1450            . "$AD_OPTFILE"
1451            RETVAL=$?
1452            if test "x$RETVAL" != x0 ; then
1453                printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1454                echo "--please check that variable syntax is bash-compatible"
1455                exit 1
1456            fi
1457            if test "x$DUMPSTATE" != xf ; then
1458                cp -f $AD_OPTFILE "genmake_ad_optfile"
1459            fi
1460        else
1461            echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
1462            exit 1
1463        fi
1464    fi
1465    
1466    #====================================================================
1467    #  Set default values if not set by the optfile
1468    #
1469    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1470    #  either set defaults or complain and abort!
1471    if test ! "x$BASH" = x ; then
1472        # add a trailing space so that it works within the Makefile syntax (see below)
1473        BASH="$BASH "
1474    fi
1475  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1476      cat <<EOF 1>&2      cat <<EOF 1>&2
1477    
1478  Error: no Fortran compiler: please specify using one of the following:  Error: no Fortran compiler: please specify using one of the following:
1479    1) within the options file ("FC=...") as specified by "-of=OPTFILE"    1) within the options file ("FC=...") as specified by "-of=OPTFILE"
1480    2) the "-fc=XXX" command-line option    2) the "-fc=XXX" command-line option
1481    3) the "./gm_local" file    3) the "./genmake_local" file
1482  EOF  EOF
1483      exit 1      exit 1
1484  fi  fi
1485    if test "x$CC" = x ; then
1486        CC=cc
1487    #     cat <<EOF 1>&2
1488    # Error: no C compiler: please specify using one of the following:
1489    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1490    #   2) the "-cc=XXX" command-line option
1491    #   3) the "./genmake_local" file
1492    # EOF
1493    #     exit 1
1494    fi
1495  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1496      LINK=$FC      LINK=$FC
1497  fi  fi
1498    if test "x$MAKE" = x ; then
1499        MAKE="make"
1500    fi
1501  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1502      CPP="cpp"      CPP=cpp
1503  fi  fi
1504  echo "#define A a" | cpp > test_cpp 2>&1  #EH3 === UGLY ===
1505    #  The following is an ugly little hack to check for $CPP in /lib/ and
1506    #  it should eventually be replaced with a more general function that
1507    #  searches a combo of the user's path and a list of "usual suspects"
1508    #  to find the correct location for binaries such as $CPP.
1509    for i in " " "/lib/" ; do
1510        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1511    done
1512    #EH3 === UGLY ===
1513    echo "#define A a" | $CPP > test_cpp 2>&1
1514  RETVAL=$?  RETVAL=$?
1515  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1516      cat <<EOF 1>&2      cat <<EOF 1>&2
# Line 558  if test "x$RETVAL" != x0 ; then Line 1518  if test "x$RETVAL" != x0 ; then
1518  Error: C pre-processor "$CPP" failed the test case: please specify using:  Error: C pre-processor "$CPP" failed the test case: please specify using:
1519    
1520    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1521    2) the "./gm_local" file    2) the "./genmake_local" file
1522      3) with the CPP environment variable
1523    
1524  EOF  EOF
1525      exit 1      exit 1
1526  else  else
1527      rm -f test_cpp      rm -f test_cpp
1528  fi  fi
1529  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
1530      MAKEDEPEND=makedepend  if test "x$LN" = x ; then
1531        LN="ln -s"
1532    fi
1533    echo "test" > genmake_test_ln
1534    $LN genmake_test_ln genmake_tlink
1535    RETVAL=$?
1536    if test "x$RETVAL" != x0 ; then
1537        cat <<EOF 1>&2
1538    
1539    Error: The command "ln -s" failed -- please specify a working soft-link
1540      command in the optfile.
1541    
1542    EOF
1543        exit 1
1544    fi
1545    test -L genmake_tlink > /dev/null 2>&1
1546    RETVAL=$?
1547    if test "x$RETVAL" = x0 ; then
1548        HAVE_TEST_L=t
1549    fi
1550    rm -f genmake_test_ln genmake_tlink
1551    
1552    #  Check for broken *.F/*.f handling and fix if possible
1553    check_for_broken_Ff
1554    
1555    if test ! "x$MPI" = x ; then
1556          echo "  Turning on MPI cpp macros"
1557          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1558    fi
1559    
1560    if test ! "x$TS" = x ; then
1561          echo "  Turning on timing per timestep"
1562          if test ! "x$FOOLAD" = x ; then
1563                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1564          else
1565                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1566          fi
1567          PACKAGES="$PACKAGES showflops"
1568    fi
1569    if test ! "x$PAPIS" = x ; then
1570          echo "  Turning on PAPI flop summary per timestep"
1571          echo "  Please make sure PAPIINC, PAPILIB are defined"
1572          if test ! "x$FOOLAD" = x ; then
1573                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1574          else
1575                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1576          fi
1577          INCLUDES="$INCLUDES $PAPIINC"
1578          LIBS="$LIBS $PAPILIB"
1579          PACKAGES="$PACKAGES showflops"
1580    fi
1581    if test ! "x$PCLS" = x ; then
1582          echo "  Turning on PCL counter summary per timestep"
1583          echo "  Please make sure PCLINC, PCLLIB are defined"
1584          if test ! "x$FOOLAD" = x ; then
1585                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1586          else
1587                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1588          fi
1589          INCLUDES="$INCLUDES $PCLINC"
1590          LIBS="$LIBS $PCLLIB"
1591          PACKAGES="$PACKAGES showflops"
1592    fi
1593    if test ! "x$PAPI" = x ; then
1594          if test ! "x$PAPIS" = x ; then
1595              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1596              echo "  Sticking with PAPI flop summary per timestep!"
1597          else
1598              echo "  Turning on performance analysis with PAPI"
1599              echo "  Please make sure PAPIINC, PAPILIB are defined"
1600              DEFINES="$DEFINES -DUSE_PAPI"
1601              INCLUDES="$INCLUDES $PAPIINC"
1602              LIBS="$LIBS $PAPILIB"
1603          fi
1604    fi
1605    if test ! "x$PCL" = x ; then
1606          if test ! "x$PCLS" = x ; then
1607              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1608              echo "  Sticking with PCL flop summary per timestep!"
1609          else
1610              echo "  Turning on performance analysis with PCL"
1611              echo "  Please make sure PCLINC, PCLLIB are defined"
1612              DEFINES="$DEFINES -DUSE_PCL"
1613              INCLUDES="$INCLUDES $PCLINC"
1614              LIBS="$LIBS $PCLLIB"
1615          fi
1616    fi
1617    if test ! "x$HPMT" = x ; then
1618          if test ! "x$PAPI" = x ; then
1619              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1620              echo "  Sticking with PAPI!"
1621          else if test ! "x$PCL" = x ; then
1622              echo "  PCL and the HPM Toolkit cannot co-exist!"
1623              echo "  Sticking with PCL!"
1624          else
1625              echo "  Turning on performance analysis with the HPM Toolkit"
1626              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1627              DEFINES="$DEFINES -DUSE_LIBHPM"
1628              INCLUDES="$INCLUDES $HPMTINC"
1629              LIBS="$LIBS $HPMTLIB"
1630          fi
1631          fi
1632    fi
1633    if test ! "x$GSL" = x ; then
1634          echo "  Turning on use of GSL to control floating point calculations"
1635          echo "  Please make sure GSLINC, GSLLIB are defined"
1636          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1637          INCLUDES="$INCLUDES $GSLINC"
1638          LIBS="$LIBS $GSLLIB"
1639    fi
1640    
1641    printf "\n===  Checking system libraries  ===\n"
1642    printf "  Do we have the system() command using $FC...  "
1643    cat > genmake_tcomp.$FS <<EOF
1644          program hello
1645          call system('echo hi')
1646          end
1647    EOF
1648    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1649    RETVAL=$?
1650    if test "x$RETVAL" = x0 ; then
1651        HAVE_SYSTEM=t
1652        DEFINES="$DEFINES -DHAVE_SYSTEM"
1653        echo "yes"
1654    else
1655        HAVE_SYSTEM=
1656        echo "no"
1657    fi
1658    rm -f genmake_tcomp*
1659    
1660    printf "  Do we have the fdate() command using $FC...  "
1661    cat > genmake_tcomp.$FS <<EOF
1662          program hello
1663          CHARACTER*(128) string
1664          string = ' '
1665          call fdate( string )
1666          print *, string
1667          end
1668    EOF
1669    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1670    RETVAL=$?
1671    if test "x$RETVAL" = x0 ; then
1672        HAVE_FDATE=t
1673        DEFINES="$DEFINES -DHAVE_FDATE"
1674        echo "yes"
1675    else
1676        HAVE_FDATE=
1677        echo "no"
1678    fi
1679    rm -f genmake_tcomp*
1680    
1681    printf "  Do we have the etime() command using $FC...  "
1682    cat > genmake_tcomp.$FS <<EOF
1683          program hello
1684          REAL*4 ACTUAL, TARRAY(2)
1685          EXTERNAL ETIME
1686          REAL*4 ETIME
1687          actual = etime( tarray )
1688          print *, tarray
1689          end
1690    EOF
1691    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1692    RETVAL=$?
1693    if test "x$RETVAL" = x0 ; then
1694        HAVE_ETIME=t
1695        DEFINES="$DEFINES -DHAVE_ETIME"
1696        echo "yes"
1697    else
1698        HAVE_ETIME=
1699        echo "no"
1700  fi  fi
1701    rm -f genmake_tcomp*
1702    
1703    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1704    check_HAVE_CLOC
1705    if test "x$HAVE_CLOC" != x ; then
1706        echo "yes"
1707    else
1708        echo "no"
1709        if test "x$EMBED_SRC" = xt ; then
1710            echo "    WARNING: you requested file embedding but it has"
1711            echo "      been disabled since C code cannot be called"
1712            EMBED_SRC=
1713        fi
1714    fi
1715    rm -f genmake_t*
1716    
1717    printf "  Can we unlimit the stack size using $FC...  "
1718    check_HAVE_SETRLSTK
1719    if test "x$HAVE_SETRLSTK" = xt ; then
1720        echo "yes"
1721    else
1722        echo "no"
1723    fi
1724    rm -f genmake_t*
1725    
1726    printf "  Can we register a signal handler using $FC...  "
1727    check_HAVE_SIGREG
1728    if test "x$HAVE_SIGREG" = xt ; then
1729        echo "yes"
1730    else
1731        echo "no"
1732    fi
1733    rm -f genmake_t*
1734    
1735    printf "  Can we use stat() through C calls...  "
1736    check_HAVE_STAT
1737    if test "x$HAVE_STAT" != x ; then
1738        echo "yes"
1739    else
1740        echo "no"
1741    fi
1742    rm -f genmake_t*
1743    
1744    printf "  Can we create NetCDF-enabled binaries...  "
1745    check_netcdf_libs
1746    if test "x$HAVE_NETCDF" != x ; then
1747        echo "yes"
1748    else
1749        echo "no"
1750    fi
1751    DEFINES="$DEFINES $IGNORE_TIME"
1752    
1753    if test "x$EMBED_SRC" = xt ; then
1754        build_embed_encode
1755    fi
1756    if test "x$EMBED_SRC" = xt ; then
1757        ENABLE="$ENABLE embed_files"
1758    fi
1759    
1760    
1761  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1762  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1763  for d in $MODS ; do  for d in $MODS ; do
1764      if test ! -d $d ; then      if test ! -d $d ; then
1765          echo          echo
1766          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1767          exit 1          exit 1
1768      else      else
1769          echo -n " $d"          printf " $d"
1770          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1771          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1772      fi      fi
1773  done  done
1774  echo  echo
1775    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1776  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1777      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1778  fi  fi
1779    
1780  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1781      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1782        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1783          EXEDIR=../exe          EXEDIR=../exe
1784      else      else
1785          EXEDIR=.          EXEDIR=.
# Line 607  if test "x${TOOLSDIR}" = x ; then Line 1794  if test "x${TOOLSDIR}" = x ; then
1794      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1795  fi  fi
1796  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1797      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1798      exit 1      exit 1
1799  fi  fi
1800  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1801      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1802        RETVAL=$?
1803        if test "x${RETVAL}" = x0 ; then
1804            S64='$(TOOLSDIR)/set64bitConst.sh'
1805        else
1806            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1807            RETVAL=$?
1808            if test "x${RETVAL}" = x0 ; then
1809                S64='$(TOOLSDIR)/set64bitConst.csh'
1810            else
1811                cat <<EOF
1812    
1813    ERROR: neither of the two default scripts:
1814    
1815        ${TOOLSDIR}/set64bitConst.sh
1816        ${TOOLSDIR}/set64bitConst.csh
1817    
1818      are working so please check paths or specify (with \$S64) a
1819      working version of this script.
1820    
1821    EOF
1822                exit 1
1823            fi
1824        fi
1825  fi  fi
1826    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1827    
1828  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1829    
# Line 621  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 1832  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1832  #  they appear as regular source code  #  they appear as regular source code
1833  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1834      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1835      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
1836      RETVAL=$?      RETVAL=$?
1837      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1838          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1839      else      else
1840          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1841          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1842          exit 1          exit 1
1843      fi      fi
1844  fi  fi
1845    
1846    #same for pkg/exch2 and pkg/regrid
1847    for pdir in exch2 regrid ; do
1848        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1849            echo "  Making source files in pkg/${pdir} from templates"
1850            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1
1851            RETVAL=$?
1852            if test "x${RETVAL}" = x0 ; then
1853                rm -f make_${pdir}.errors
1854            else
1855                echo "Error: problem encountered while building source files in pkg/${pdir}:"
1856                cat make_${pdir}.errors 1>&2
1857                exit 1
1858            fi
1859        fi
1860    done
1861    
1862  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1863  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1864      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 651  echo "  getting package dependency info Line 1878  echo "  getting package dependency info
1878  #  Strip the comments and then convert the dependency file into  #  Strip the comments and then convert the dependency file into
1879  #  two arrays: PNAME, DNAME  #  two arrays: PNAME, DNAME
1880  cat $PDEPEND | sed -e 's/#.*$//g' \  cat $PDEPEND | sed -e 's/#.*$//g' \
1881      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
1882      > ./.pd_tmp      > ./.pd_tmp
1883  RETVAL=$?  RETVAL=$?
1884  if test ! "x${RETVAL}" = x0 ; then  if test ! "x${RETVAL}" = x0 ; then
1885      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
1886      exit 1      exit 1
1887  fi  fi
1888  source ./.pd_tmp  . ./.pd_tmp
1889  rm -f ./.pd_tmp  rm -f ./.pd_tmp
1890    
1891  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1892  #  file should eventually be added so that, for convenience, one can  #  file should eventually be added so that, for convenience, one can
1893  #  specify groups of packages using names like "ocean" and "atmosphere".  #  specify groups of packages using names like "ocean" and "atmosphere".
1894  echo  -n "  checking default package list:  "  echo "  checking default package list:  "
1895  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1896      for i in "." $MODS ; do      for i in "." $MODS ; do
1897          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
# Line 677  if test "x${PDEFAULT}" = x ; then Line 1904  if test "x${PDEFAULT}" = x ; then
1904      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1905  fi  fi
1906  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1907      echo "default packages file disabled"      echo "    default packages file disabled"
1908  else  else
1909      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1910          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1911      else      else
1912          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1913          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1914          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1915          RETVAL=$?          RETVAL=$?
1916          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1917              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1918              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1919              exit 1              exit 1
1920          fi          fi
# Line 696  else Line 1922  else
1922              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1923          done          done
1924          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1925          expand_pkg_groups          RET=1
1926            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1927          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1928      fi      fi
1929  fi  fi
1930    
1931  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1932    for i in $PACKAGES ; do
1933        echo $i >> ./.tmp_pack
1934    done
1935    for i in `grep  "-" ./.tmp_pack` ; do
1936        j=`echo $i | sed 's/[-]//'`
1937        DISABLE="$DISABLE $j"
1938    done
1939  pack=  pack=
1940  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1941      addit="t"      addit="t"
# Line 718  PACKAGES="$pack" Line 1952  PACKAGES="$pack"
1952  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1953  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1954  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1955    # Test if each explicitly referenced package exists
1956  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1957      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1958        if test ! -d "$ROOTDIR/pkg/$j" ; then
1959          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1960          exit 1          exit 1
1961      fi      fi
1962      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1963  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1964  PACKAGES=  PACKAGES=
1965  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1966      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1967  done  done
1968    rm -f ./.tmp_pack
1969  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1970    
1971    #  Check for package MNC: if NetCDF is available, then build the MNC
1972    #  template files ; otherwise, delete mnc from the list of packages.
1973    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1974    RETVAL=$?
1975    if test "x$RETVAL" = x0 ; then
1976        if test "x$HAVE_NETCDF" != xt ; then
1977            cat <<EOF
1978    
1979    *********************************************************************
1980    WARNING: the "mnc" package was enabled but tests failed to compile
1981      NetCDF applications.  Please check that:
1982    
1983      1) NetCDF is correctly installed for this compiler and
1984      2) the LIBS variable (within the "optfile") specifies the correct
1985           NetCDF library to link against.
1986    
1987      Due to this failure, the "mnc" package is now DISABLED.
1988    *********************************************************************
1989    
1990    EOF
1991            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
1992            DISABLE="$DISABLE mnc"
1993        else
1994            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
1995            RETVAL=$?
1996            if test "x${RETVAL}" = x0 ; then
1997                rm -f make_mnc.errors
1998            else
1999                echo "Error: problem encountered while building source files in pkg/mnc:"
2000                cat make_mnc.errors 1>&2
2001                exit 1
2002            fi
2003        fi
2004    fi
2005    
2006    #  Check for package PROFILES: if NetCDF is not available,
2007    #  then delete profiles from the list of available packages.
2008    echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1
2009    RETVAL=$?
2010    if test "x$RETVAL" = x0 ; then
2011        if test "x$HAVE_NETCDF" != xt ; then
2012            cat <<EOF
2013    
2014    *********************************************************************
2015    WARNING: the "profiles" package was enabled but tests failed to
2016      compile NetCDF applications.  Please check that:
2017    
2018      1) NetCDF is correctly installed for this compiler and
2019      2) the LIBS variable (within the "optfile") specifies the correct
2020           NetCDF library to link against.
2021    
2022      Due to this failure, the "profiles" package is now DISABLED.
2023    *********************************************************************
2024    
2025    EOF
2026            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2027            DISABLE="$DISABLE profiles"
2028        fi
2029    fi
2030    
2031  echo "  applying package dependency rules"  echo "  applying package dependency rules"
2032  ck=  ck=
2033  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
2034      i=0      i=0
2035      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2036      rtot=$nname      rtot=$nname
2037      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2038    
2039          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2040          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 773  while test "x$ck" != xtt ; do Line 2068  while test "x$ck" != xtt ; do
2068    
2069          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2070          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2071                #echo "   " $pname ": need to add :" $dname
2072              in_dis="f"              in_dis="f"
2073              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2074                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 797  while test "x$ck" != xtt ; do Line 2093  while test "x$ck" != xtt ; do
2093              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2094              exit 1              exit 1
2095          fi          fi
2096          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2097            #i=$(( $i + 1 ))
2098      done      done
2099      ck=$ck"t"      ck=$ck"t"
2100  done  done
# Line 807  for i in $PACKAGES ; do Line 2104  for i in $PACKAGES ; do
2104      if test -d $adr ; then      if test -d $adr ; then
2105          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
2106          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
2107            if test "x$i" = xautodiff ; then
2108                AUTODIFF_PKG_USED=t
2109            fi
2110      else      else
2111          echo "Error: the directory \"$adr\" for package $i doesn't exist"          echo "Error: the directory \"$adr\" for package $i doesn't exist"
2112          exit 1          exit 1
2113      fi      fi
2114  done  done
2115    
 #  This is compatible with the old genmake.  The "DISABLE_*" flags  
 #  need to be replaced by the "ALLOW_*" flags set below.  
 #  
 # echo -n "  Setting package-specific CPP flags:  "  
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
2116  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2117  PACKAGES_DOT_H=PACKAGES.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
 cat <<EOF >$PACKAGES_DOT_H".tmp"  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
   
 C  Packages disabled by genmake:  
 EOF  
2118  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2119  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2120  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2121  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2122  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2123  all_pack=  all_pack=
2124    DISABLED_PACKAGES=
2125  for n in $names ; do  for n in $names ; do
2126      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2127          has_pack="f"          has_pack="f"
# Line 862  for n in $names ; do Line 2132  for n in $names ; do
2132              fi              fi
2133          done          done
2134          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2135              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2136              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
 #           DEFINES="$DEFINES -U$undef"  
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
2137          fi          fi
2138      fi      fi
2139  done  done
2140  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2141  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2142      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2143      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2144  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2145    
2146  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2147      case $i in      case $i in
2148          aim_v23)          aim_v23)
2149              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2150              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
2151              ;;              ;;
2152      esac      esac
2153  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2154    
2155  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
2156    
2157  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
2158  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2159  STANDARDDIRS=${STANDARDDIRS:-"eesupp model"}  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2160  for d in $STANDARDDIRS ; do      STANDARDDIRS="eesupp model"
2161      adr="$ROOTDIR/$d/src"  fi
2162      if test ! -d $adr ; then  if test "x$STANDARDDIRS" != x ; then
2163          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""      for d in $STANDARDDIRS ; do
2164          echo "  is correct and that you correctly specified the STANDARDDIRS option"          adr="$ROOTDIR/$d/src"
2165          exit 1          if test ! -d $adr ; then
2166      else              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2167          SOURCEDIRS="$SOURCEDIRS $adr"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2168      fi              exit 1
2169      adr="$ROOTDIR/$d/inc"          else
2170      if test ! -d $adr ; then              SOURCEDIRS="$SOURCEDIRS $adr"
2171          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          fi
2172          echo "  is correct and that you correctly specified the STANDARDDIRS option"          adr="$ROOTDIR/$d/inc"
2173          exit 1          if test ! -d $adr ; then
2174      else              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2175          INCLUDEDIRS="$INCLUDEDIRS $adr"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2176      fi              exit 1
2177  done          else
2178                INCLUDEDIRS="$INCLUDEDIRS $adr"
2179            fi
2180        done
2181    fi
2182    
2183  echo " Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2184  echo " of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
2185  CPP_OPTIONS=  CPP_OPTIONS=
2186    CPP_EEOPTIONS=
2187  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
2188    names=`ls -1 "$ROOTDIR/pkg"`
2189  for i in $spaths ; do  for i in $spaths ; do
2190      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
2191      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
2192          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2193          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2194          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2195            for n in $names ; do
2196                test_for_package_in_cpp_options $CPP_OPTIONS $n
2197            done
2198        fi
2199        try="$i/CPP_EEOPTIONS.h"
2200        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2201            echo "    found CPP_EEOPTIONS=\"$try\""
2202            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2203    #**** not yet enabled ****
2204    #        test_for_mpi_in_cpp_eeoptions $try
2205    #**** not yet enabled ****
2206            CPP_EEOPTIONS="$try"
2207      fi      fi
2208  done  done
2209  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
2210      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2211      exit 1      exit 1
2212  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
2213    
2214    #  Here, we build the list of files to be "run through" the adjoint
2215    #  compiler.
2216    if test -f ./ad_files ; then
2217        rm -f ./ad_files
2218    fi
2219    echo "  Creating the list of files for the adjoint compiler."
2220    for i in $SOURCEDIRS ; do
2221        list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2222        for j in $list_files ; do
2223            cat $i/$j >> ad_files
2224        done
2225    done
2226    if test ! "x"$FS = "x.f" ; then
2227        cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f
2228        mv -f ad_files_f ad_files
2229    fi
2230    
2231  echo  echo
2232  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2233  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2234  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2235      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2236          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2237      fi      fi
2238  done  done
2239    
2240    if test ! "x$DIVA" = x ; then
2241        echo "  Creating the pseudo-MPI include directory"
2242        INCLUDES="-I./mpi_headers $INCLUDES"
2243        rm -rf ./mpi_headers
2244        mkdir -p ./mpi_headers
2245    
2246        if test "x$MPIINCLUDEDIR" = x ; then
2247            if test "x$MPIHOME" = x ; then
2248                MPIHOME='/usr'
2249            fi
2250            MPIINCLUDEDIR='$MPIHOME/include'
2251        fi
2252        
2253        if test -r $MPIINCLUDEDIR/mpif.h ; then
2254            for i in $MPI_HEADER_FILES; do
2255                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2256            done
2257    
2258            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2259        else
2260            echo " We cannot create a copy of mpif.h!"
2261    #       exit -1
2262        fi
2263    fi
2264    
2265  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2266  rm -rf .links.tmp  rm -rf .links.tmp
2267  mkdir .links.tmp  mkdir .links.tmp
2268    touch .links.tmp/foo
2269    if test ! -r ".links.tmp/foo" ; then
2270        echo
2271        echo "ERROR : something is wrong with your directory permissions or"
2272        echo "   your user file-creation mask (\"umask\") since creating a"
2273        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2274        echo "   not working.  Please try setting your umask to something"
2275        echo "   sane such as:"
2276        echo
2277        echo "      umask 0002"
2278        echo
2279        echo "   and please verify that you have the proper permissions for"
2280        echo "   creating sub-directories and then reading files created"
2281        echo "   within them."
2282        echo
2283        exit 1
2284    fi
2285    rm -f .links.tmp/foo
2286  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2287  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2288  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
2289  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
2290  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
2291  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
2292    printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
2293  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2294  for d in $alldirs ; do  for d in $alldirs ; do
2295      deplist=      deplist=
2296      sfiles=`( cd $d; echo *.[h,c,F] )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2297      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2298      for sf in $sfiles ; do      for sf in $sfiles ; do
2299          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2300              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2301                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  ignore_f=f
2302                  touch .links.tmp/$sf                  case $d/$sf in
2303                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2304                  case $extn in                          ignore_f=t
                     F)  
                         echo    " \\"  >> srclist.inc  
                         echo -n " $sf" >> srclist.inc  
2305                          ;;                          ;;
2306                      F90)                    ./AD_CONFIG.h)
2307                          echo    " \\"  >> f90srclist.inc                          ignore_f=t
                         echo -n " $sf" >> f90srclist.inc  
2308                          ;;                          ;;
2309                      c)                    ./FC_NAMEMANGLE.h)
2310                          echo    " \\"  >> csrclist.inc                          ignore_f=t
                         echo -n " $sf" >> csrclist.inc  
2311                          ;;                          ;;
2312                      h)                    ./BUILD_INFO.h)
2313                          echo    " \\"  >> hlist.inc                          ignore_f=t
                         echo -n " $sf" >> hlist.inc  
2314                          ;;                          ;;
2315                  esac                    ./EMBEDDED_FILES.h)
2316                            ignore_f=t
2317                            ;;
2318                      *)
2319                            #  For the local directory *ONLY*,
2320                            #  ignore all soft-links
2321                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2322                                ignore_f=t
2323                            else
2324                                touch .links.tmp/$sf
2325                                deplist="$deplist $sf"
2326                            fi
2327                            ;;
2328                    esac
2329                    if test "x$ignore_f" = xf ; then
2330                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2331                        case $extn in
2332                            F)
2333                                echo    " \\"  >> srclist.inc
2334                                printf " $sf" >> srclist.inc
2335                                ;;
2336                            F90)
2337                                echo    " \\"  >> f90srclist.inc
2338                                printf " $sf" >> f90srclist.inc
2339                                ;;
2340                            c)
2341                                echo    " \\"  >> csrclist.inc
2342                                printf " $sf" >> csrclist.inc
2343                                ;;
2344                            h)
2345                                echo    " \\"  >> hlist.inc
2346                                printf " $sf" >> hlist.inc
2347                                ;;
2348                            flow)
2349                                echo    " \\"  >> ad_flow_files.inc
2350                                printf " $sf" >> ad_flow_files.inc
2351                                ;;
2352                        esac
2353                    fi
2354              fi              fi
2355          fi          fi
2356      done      done
# Line 1031  echo "" >> srclist.inc Line 2366  echo "" >> srclist.inc
2366  echo "" >> csrclist.inc  echo "" >> csrclist.inc
2367  echo "" >> f90srclist.inc  echo "" >> f90srclist.inc
2368  echo "" >> hlist.inc  echo "" >> hlist.inc
2369    echo "" >> ad_flow_files.inc
2370    
2371  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2372      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
2373  fi  fi
2374  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1041  echo "#    $MACHINE" >> $MAKEFILE Line 2377  echo "#    $MACHINE" >> $MAKEFILE
2377  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2378  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2379  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2380  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
2381  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2382  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2383    
2384    EXE_AD=$EXECUTABLE"_ad"
2385    EXE_FTL=$EXECUTABLE"_ftl"
2386    EXE_SVD=$EXECUTABLE"_svd"
2387    
2388  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2389    #
2390    # OPTFILE="$OPTFILE"
2391  #  #
2392  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2393  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 1072  EXEDIR      = ${EXEDIR} Line 2415  EXEDIR      = ${EXEDIR}
2415  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2416  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2417    
2418    #eh3  new defines for the adjoint work
2419    AUTODIFF    = ${ROOTDIR}/pkg/autodiff
2420    EXE_AD      = ${EXE_AD}
2421    EXE_FTL     = ${EXE_FTL}
2422    EXE_SVD     = ${EXE_SVD}
2423    
2424    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2425    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2426    
2427    # These files are created by Makefile
2428    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2429  EOF  EOF
2430    
2431  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2432        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2433    else
2434        echo "EMBEDDED_FILES = " >>$MAKEFILE
2435    fi
2436    
2437    #  Note: figure out some way to add Hyades JAM libraries here
2438  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2439  # Unix ln (link)  # Unix ln (link)
2440  LN = ${LN}  LN = ${LN}
# Line 1089  KPP = ${KPP} Line 2448  KPP = ${KPP}
2448  FC = ${FC}  FC = ${FC}
2449  # Fortran compiler  # Fortran compiler
2450  F90C = ${F90C}  F90C = ${F90C}
2451    # C compiler
2452    CC = ${CC}
2453  # Link editor  # Link editor
2454  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2455    
2456  # Defines for CPP  # Defines for CPP
2457  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1111  CFLAGS = ${CFLAGS} Line 2472  CFLAGS = ${CFLAGS}
2472  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2473  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2474  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2475  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2476  # Name of the Mekfile  # Name of the Mekfile
2477  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2478    
2479  EOF  EOF
2480    
2481  cat srclist.inc    >> $MAKEFILE  cat srclist.inc       >> $MAKEFILE
2482  cat csrclist.inc   >> $MAKEFILE  cat csrclist.inc      >> $MAKEFILE
2483  cat f90srclist.inc >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
2484  cat hlist.inc      >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
2485  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
2486  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo >> $MAKEFILE
2487    echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
2488    echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE
2489  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
2490    echo >> $MAKEFILE
2491    echo '.SUFFIXES:' >> $MAKEFILE
2492    echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE
2493  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
2494    rm -f ad_flow_files.inc
2495    
2496  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2497    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
2498  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2499  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2500            @echo Creating \$@ ...
2501          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2502  depend:  depend:
2503          @make links          @make links
2504          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
2505          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2506            -rm -f makedepend.out
2507    
2508    lib: libmitgcmuv.a
2509    
2510  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  libmitgcmuv.a: \$(OBJFILES)
2511            ar rcv libmitgcmuv.a \$(OBJFILES)
2512            ar d   libmitgcmuv.a main.o
2513    
2514    links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
2515    
2516  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
2517    
# Line 1149  output.txt: \$(EXECUTABLE) Line 2520  output.txt: \$(EXECUTABLE)
2520          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2521    
2522  clean:  clean:
2523          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2524            -rm -rf *.o
2525            -rm -rf *.$FS
2526  Clean:  Clean:
2527          @make clean          @make clean
2528          @make cleanlinks          @make cleanlinks
2529          -rm -f Makefile.bak gm_state gm_optfile make.log          -rm -f \$(SPECIAL_FILES)
2530            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
2531  CLEAN:  CLEAN:
2532          @make Clean          @make Clean
2533          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2534          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2535          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2536          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2537            -rm -rf mnc_test_*
2538    
2539    #eh3 Makefile: makefile
2540  makefile:  makefile:
2541          ${0} $@          $THIS_SCRIPT $G2ARGS
2542  cleanlinks:  cleanlinks:
2543          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2544    
2545  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are create by make
2546  .F.f:  ${PACKAGES_DOT_H}:
2547            @echo Creating \$@ ...
2548            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2549    AD_CONFIG.h:
2550            @echo Creating \$@ ...
2551            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2552    FC_NAMEMANGLE.h:
2553            @echo Creating \$@ ...
2554            echo "$FC_NAMEMANGLE" > \$@
2555    
2556    BUILD_INFO.h:
2557            @echo Creating \$@ ...
2558    EOF
2559    
2560    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2561    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2562    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2563    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2564    
2565    if test "x$EMBED_SRC" = xt ; then
2566        cat >>$MAKEFILE <<EOF
2567    
2568    decode_files.o : EMBEDDED_FILES.h
2569    
2570    ##  \$(F77FILES)
2571    all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2572            @echo Creating \$@ ...
2573            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2574            -rm -f all_fF.tar.gz
2575            -gzip all_fF.tar
2576    
2577    EMBEDDED_FILES.h : all_fF.tar.gz
2578            @echo Creating \$@ ...
2579            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2580    
2581    EOF
2582    fi
2583    
2584    cat >>$MAKEFILE <<EOF
2585    
2586    # The normal chain of rules is (  .F - .$FS - .o  )
2587    
2588    ## This nullifies any default implicit rules concerning these two file types:
2589    ## %.o : %.F
2590    
2591    .F.$FS:
2592          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2593  .f.o:  .$FS.o:
2594          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2595  .F90.f90:  .F90.o:  
         \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@  
 .f90.o:  
2596          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2597  .c.o:  .c.o:
2598          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2599    
2600  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2601  .F.p:  .F.p:
2602          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2603  .p.f:  .p.$FS:
2604          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2605    
2606    #=========================================
2607    #===  Automatic Differentiation Rules  ===
2608    
2609    TAMC           = ${TAMC}
2610    TAF            = ${TAF}
2611    
2612    TAF_EXTRA      = ${TAF_EXTRA}
2613    TAMC_EXTRA     = ${TAMC_EXTRA}
2614    
2615    EOF
2616    
2617    ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
2618    ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
2619    ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2620    for i in $ad_vars ; do
2621        name=$i
2622        t1="t2=\$"`echo "$i"`
2623        eval $t1
2624        printf "%-20s = " $name >> $MAKEFILE
2625        echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2626    done
2627    
2628    echo "  Add the source list for AD code generation"
2629    echo >> $MAKEFILE
2630    printf "AD_FILES = " >> $MAKEFILE
2631    AD_FILES=`cat ad_files`
2632    for i in $AD_FILES ; do
2633        echo    " \\" >> $MAKEFILE
2634        printf " $i" >> $MAKEFILE
2635    done
2636    echo >> $MAKEFILE
2637    rm -f ad_files
2638    
2639    cat >>$MAKEFILE <<EOF
2640    
2641    # ... AD ...
2642    adall: \$(EXE_AD)
2643    adtaf: ad_taf_output.$FS
2644    adtamc: ad_tamc_output.$FS
2645    
2646    ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2647            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2648            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2649            -rm -f ad_config.template
2650            @make \$(F77FILES)
2651            @make \$(AD_FLOW_FILES)
2652            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS
2653    
2654    ad_taf_output.$FS: ad_input_code.$FS
2655            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2656            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2657    
2658    adtafonly:
2659            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2660            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2661    
2662    \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2663            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2664    
2665    ad_tamc_output.$FS: ad_input_code.$FS
2666            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2667            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2668    
2669    ad_tamc: ad_tamc_output.o \$(OBJFILES)
2670            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2671    
2672    adonlyfwd:
2673            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2674    
2675    adtrick:
2676            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2677    
2678    # ... FTL ...
2679    ftlall: ftl_taf
2680    ftltaf: ftl_taf_output.$FS
2681    ftltamc: ftl_tamc_output.$FS
2682    
2683    ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2684            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2685            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2686            -rm -f ftl_config.template
2687            @make \$(F77FILES)
2688            @make \$(AD_FLOW_FILES)
2689            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2690    
2691    ftl_taf_output.$FS: ftl_input_code.$FS
2692            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2693            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2694    
2695    ftltafonly:
2696            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2697            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2698    
2699    ftl_taf: ftl_taf_output.o \$(OBJFILES)
2700            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2701    
2702    ftl_tamc_output.$FS: ftl_input_code.$FS
2703            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2704            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2705    
2706    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2707            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2708    
2709    
2710    # ... SVD ...
2711    svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2712            @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2713            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2714    svdall: svd_touch svd_taf
2715    
2716    svd_taf: \$(OBJFILES)
2717            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2718    
2719            @echo "--->>> Only COMPILE svd code! <<<---"
2720            @echo "--->>> Assumes you previously <<<---"
2721            @echo "--->>> did make svdtaf        <<<---"
2722    
2723    svd_touch:
2724            @echo "--->>> Only COMPILE svd code! <<<---"
2725            @echo "--->>> Assumes you previously <<<---"
2726            @echo "--->>> did make svdtaf        <<<---"
2727            touch ad_taf_output.$FS ftl_taf_output.$FS
2728            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2729            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2730            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2731            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2732            -rm -f ftl_config.template
2733    
2734    #=========================================
2735    
2736  EOF  EOF
2737    
2738  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
# Line 1197  for i in $KPPFILES ; do Line 2746  for i in $KPPFILES ; do
2746      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2747          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2748      fi      fi
2749      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
2750  done  done
2751    
2752  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1207  for i in $NOOPTFILES ; do Line 2756  for i in $NOOPTFILES ; do
2756      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2757          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2758      fi      fi
2759      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
2760      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
2761  done  done
2762    
# Line 1220  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 2769  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
2769    
2770  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
2771    
2772    # Create special header files
2773    $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
2774    if test ! -f $PACKAGES_DOT_H ; then
2775        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2776    else
2777        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
2778        RETVAL=$?
2779        if test "x$RETVAL" = x0 ; then
2780            rm -f $PACKAGES_DOT_H".tmp"
2781        else
2782            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
2783            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2784        fi
2785    fi
2786    if test ! -f AD_CONFIG.h ; then
2787        $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
2788    fi
2789    
2790    
2791  #  Write the "state" for future records  #  Write the "state" for future records
2792  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
2793      echo -n "" > gm_state      printf "" > genmake_state
2794      for i in $gm_state ; do      for i in $gm_state ; do
2795          t1="t2=\$$i"          t1="t2=\$$i"
2796          eval $t1          eval $t1
2797          echo "$i='$t2'" >> gm_state          echo "$i='$t2'" >> genmake_state
2798      done      done
2799  fi  fi

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