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revision 1.161 by jmc, Sun Feb 18 21:39:59 2007 UTC revision 1.235 by utke, Sat Aug 18 05:48:34 2012 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
173  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
# Line 56  test_for_string_in_file() { Line 217  test_for_string_in_file() {
217  # the package list.  # the package list.
218  expand_pkg_groups() {  expand_pkg_groups() {
219      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
220      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
221          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
222          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
# Line 67  expand_pkg_groups() { Line 227  expand_pkg_groups() {
227              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
228                  matched=1                  matched=1
229                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
230                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
231                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
232              else              else
233                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
# Line 110  EOF Line 270  EOF
270              check_for_broken_Ff              check_for_broken_Ff
271          else          else
272              cat <<EOF 2>&1              cat <<EOF 2>&1
273  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
274    (fails the "cp" test) and this program cannot find a suitable    (fails the "cp" test) and this program cannot find a suitable
275    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
276    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
277    
278  EOF  EOF
# Line 137  EOF Line 297  EOF
297  .F.$tfs:  .F.$tfs:
298          $LN \$< \$@          $LN \$< \$@
299  EOF  EOF
300      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
301      RETVAL=$?      RETVAL=$?
302      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
303          if test "x$FS" = x ; then          if test "x$FS" = x ; then
# Line 146  EOF Line 306  EOF
306              check_for_broken_Ff              check_for_broken_Ff
307          else          else
308              cat <<EOF 2>&1              cat <<EOF 2>&1
309  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
310    (fails the "make/ln" test) and this program cannot find a suitable    (fails the "make/ln" test) and this program cannot find a suitable
311    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
312    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
313    
314  EOF  EOF
# Line 165  EOF Line 325  EOF
325      return      return
326  }  }
327    
   
328  look_for_makedepend()  {  look_for_makedepend()  {
329    
330      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
# Line 186  look_for_makedepend()  { Line 345  look_for_makedepend()  {
345      #    3) locally build and use the cyrus implementation      #    3) locally build and use the cyrus implementation
346      #    4) fall back to the buggy local xmakedpend script      #    4) fall back to the buggy local xmakedpend script
347      #      #
348        echo >> $LOGFILE
349        echo "running: look_for_makedepend()" >> $LOGFILE
350        if test "x${MAKEDEPEND}" != x ; then
351            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
352            RETVAL=$?
353            if test x"$RETVAL" = x0 ; then
354                build_cyrus_makedepend
355                RETVAL=$?
356                if test "x$RETVAL" != x0 ; then
357                    echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'"
358                    MAKEDEPEND=
359                fi
360            else
361                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
362                RETVAL=$?
363                if test "x$RETVAL" = x0 ; then
364                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
365                fi
366                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
367            fi
368        fi
369      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
370          which makedepend > /dev/null 2>&1          which makedepend > /dev/null 2>&1
371          RV0=$?          RV0=$?
# Line 194  look_for_makedepend()  { Line 374  look_for_makedepend()  {
374          cat <<EOF >> $MAKEFILE          cat <<EOF >> $MAKEFILE
375  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
376  #  #
377  #   Some "makedepend" implementations will die if they cannot  #   Some "makedepend" implementations will die if they cannot
378  #   find a Makefile -- so this file is here to gives them an  #   find a Makefile -- so this file is here to gives them an
379  #   empty one to find and parse.  #   empty one to find and parse.
380  EOF  EOF
381          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
# Line 204  EOF Line 384  EOF
384        stop        stop
385        end        end
386  EOF  EOF
387          makedepend genmake_tc.f > /dev/null 2>&1          makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
388          RV1=$?          RV1=$?
389          test -f $MAKEFILE  &&  rm -f $MAKEFILE          test -f $MAKEFILE  &&  rm -f $MAKEFILE
390          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
391          if test "x${RV0}${RV1}" = x00 ; then          if test "x${RV0}${RV1}" = x00 ; then
392              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
393                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
394          else          else
395              echo "    a system-default makedepend was not found."              echo "    system-default makedepend not found. Try to build cyrus-makedepend"
               
396              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
397              build_cyrus_makedepend              build_cyrus_makedepend
398              RETVAL=$?              RETVAL=$?
399              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" != x0 ; then
400                    echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend"
401                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
402                    echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
403              fi              fi
             rm -f ./genmake_cy_md  
         fi  
     else  
         #  echo "MAKEDEPEND=${MAKEDEPEND}"  
         echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1  
         RETVAL=$?  
         if test x"$RETVAL" = x0 ; then  
             build_cyrus_makedepend  
404          fi          fi
405      fi      fi
406  }  }
407    
   
408  build_cyrus_makedepend()  {  build_cyrus_makedepend()  {
409        echo >> $LOGFILE
410        echo "running: build_cyrus_makedepend()" >> $LOGFILE
411      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
412      (      (
413          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
# Line 249  build_cyrus_makedepend()  { Line 424  build_cyrus_makedepend()  {
424      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
425      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
426          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
427            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
428          return 0          return 0
429      else      else
430          echo "WARNING: unable to build cyrus-imapd-makedepend"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
431          return 1          return 1
432      fi      fi
433  }  }
434    
   
435  build_embed_encode()  build_embed_encode()
436  {  {
437      printf "  building the embed-encode utility...  "      printf "  building the embed-encode utility...  "
# Line 269  build_embed_encode() Line 444  build_embed_encode()
444              return 1              return 1
445          fi          fi
446          clist="cc gcc c89 $CC"          clist="cc gcc c89 $CC"
447          for ic in $clist ; do          for ic in $clist ; do
448              comm="$ic -o encode_files encode_files.c"              comm="$ic -o encode_files encode_files.c"
449              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
450              RETVAL=$?              RETVAL=$?
451              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
452                  echo "OK"                  echo "OK"
                 DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
453                  return 0                  return 0
454              fi              fi
455          done          done
# Line 287  build_embed_encode() Line 461  build_embed_encode()
461          return 1          return 1
462      fi      fi
463      echo "OK"      echo "OK"
     DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
464  }  }
465    
466    #  look for possible C compilers
467  # Guess possible config options for this host  look_for_C_compilers() {
468  find_possible_configs()  {      echo >> $LOGFILE
469        echo "running: look_for_C_compilers()" >> $LOGFILE
470      tmp1=`uname`"_"`uname -m`      rm -f ./genmake_hello.c  ./genmake_hello
471      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat >> genmake_hello.c << EOF
     tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`  
     tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`  
     tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`  
     tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`  
     PLATFORM=$tmp3  
     echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32  
     OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`  
     echo "  The platform appears to be:  $PLATFORM"  
       
     echo "test" > test  
     ln -s ./test link  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         LN="ln -s"  
     else  
         echo "Error: \"ln -s\" does not appear to work on this system!"  
         echo "  For help, please contact <MITgcm-support@mitgcm.org>."  
         exit 1  
     fi  
     rm -f test link  
   
     if test "x$CPP" = x ; then  
         CPP="cpp -traditional -P"  
     fi  
   
     look_for_makedepend  
   
     #================================================================  
     #  look for possible C compilers  
     tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"  
     p_CC=  
     for c in $tmp ; do  
         rm -f ./genmake_hello.c  ./genmake_hello  
         cat >> genmake_hello.c << EOF  
472  #include <stdio.h>  #include <stdio.h>
473  int main(int argc, char **argv) {  int main(int argc, char **argv) {
474    printf("Hello!\n");    printf("Hello!\n");
475    return 0;    return 0;
476  }  }
477  EOF  EOF
478          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
479        p_CC=
480        for c in $tmp ; do
481            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
482            echo $COMM >> $LOGFILE
483            $COMM >> $LOGFILE 2>&1
484          RETVAL=$?          RETVAL=$?
485          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
486                echo " $c test successful" >> $LOGFILE
487              p_CC="$p_CC $c"              p_CC="$p_CC $c"
488          fi          fi
489      done      done
# Line 354  Error: No C compilers were found in your Line 499  Error: No C compilers were found in your
499  EOF  EOF
500          exit 1          exit 1
501      else      else
502          echo "  The possible C compilers found in your path are:"          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
         echo "   "$p_CC  
503          if test "x$CC" = x ; then          if test "x$CC" = x ; then
504              CC=`echo $p_CC | $AWK '{print $1}'`              CC=`echo $p_CC | $AWK '{print $1}'`
505              echo "  Setting C compiler to: "$CC              echo "  Setting C compiler to: "$CC
506          fi          fi
507      fi      fi
508        echo " --> set CC='$CC'" >> $LOGFILE
509    }
510    
511    # Guess possible config options for this host
512    find_possible_optfile()  {
513    
514        echo >> $LOGFILE
515        echo "running: find_possible_optfile()" >> $LOGFILE
516        tmp1=`uname`"_"`uname -m`
517        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
518        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
519        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
520        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
521        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
522        PLATFORM=$tmp3
523        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
524        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
525        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
526    
527      #================================================================      #================================================================
528      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
529      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"      echo "  look for possible FORTRAN compilers" >> $LOGFILE
530        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
531      p_FC=      p_FC=
532      for c in $tmp ; do      rm -f ./genmake_hello.f
533          rm -f ./hello.f ./hello      cat >> genmake_hello.f <<EOF
         cat >> hello.f <<EOF  
534        program hello        program hello
535        do i=1,3        do i=1,3
536          print *, 'hello world : ', i          print *, 'hello world : ', i
537        enddo        enddo
538        end        end
539  EOF  EOF
540          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
541            COMM="$f -o genmake_hello genmake_hello.f"
542            echo $COMM >> $LOGFILE
543            $COMM >> $LOGFILE 2>&1
544          RETVAL=$?          RETVAL=$?
545          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
546              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
547                p_FC="$p_FC $f"
548          fi          fi
549      done      done
550      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
551      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
552          cat 1>&2 <<EOF          cat 1>&2 <<EOF
553    
# Line 394  Error: No Fortran compilers were found i Line 560  Error: No Fortran compilers were found i
560  EOF  EOF
561          exit 1          exit 1
562      else      else
563          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
564      fi      fi
565    
566      #  Use the first of the compilers found in the current PATH      #  Use the first of the compilers found in the current PATH
# Line 404  EOF Line 569  EOF
569          for i in $p_FC ; do          for i in $p_FC ; do
570              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
571              if test -r $OPTFILE ; then              if test -r $OPTFILE ; then
572                  echo "  Setting OPTFILE to: "$OPTFILE                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
573                  break                  break
574              fi              fi
575          done          done
# Line 416  EOF Line 581  EOF
581               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
582          fi          fi
583      fi      fi
584  #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #   for i in $p_FC ; do  
 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
 #if test -r $p_OF ; then  
 #    OPTFILE=$p_OF  
 #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #    break  
 #fi  
 #   done  
585      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
586          cat 1>&2 <<EOF          cat 1>&2 <<EOF
587    
# Line 442  Error: No options file was found in:  $R Line 597  Error: No options file was found in:  $R
597  EOF  EOF
598          exit 1          exit 1
599      fi      fi
600        
601  #     # look for possible MPI libraries  #     # look for possible MPI libraries
602  #     mpi_libs=  #     mpi_libs=
603  #     mpi_fort=`which mpif77 2>/dev/null`  #     mpi_fort=`which mpif77 2>/dev/null`
# Line 461  EOF Line 616  EOF
616  #       if test "x${RETVAL}" = x0 ; then  #       if test "x${RETVAL}" = x0 ; then
617  #           a=`cat out`  #           a=`cat out`
618  #           for i in $a ; do  #           for i in $a ; do
619  #               case $i in  #               case $i in
620  #                   -*)  #                   -*)
621  #                       mpi_libs="$mpi_libs $i" ;;  #                       mpi_libs="$mpi_libs $i" ;;
622  #               esac  #               esac
623  #           done  #           done
624  #           echo "The MPI libs appear to be:"  #           echo "The MPI libs appear to be:"
625  #           echo "  "$mpi_libs  #           echo "  "$mpi_libs
626  #       fi  #       fi
627  #       rm -f test.f out  #       rm -f test.f out
628  #     fi  #     fi
629    }
 }  
   
 #  Parse the package dependency information  
 get_pdepend_list()  {  
   
     #  strip the comments and then convert the dependency file into  
     #  two arrays: PNAME, DNAME  
     cat $1 | sed -e 's/#.*$//g' \  
         | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \  
         > ./.pd_tmp  
     . ./.pd_tmp  
     rm -f ./.pd_tmp  
   
     printf "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME  
       -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME  
           Use "NAME" as the adoptfile.  By default, the file at  
           "tools/adjoint_options/adjoint_default" will be used.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -cc NAME | --cc NAME | -cc=NAME | --cc=NAME  
           Use "NAME" as the C compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as gcc, c89, cc, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -ignoretime | -ignore_time | --ignoretime | --ignore_time  
           Ignore all the "wall clock" routines entirely.  This will  
           not in any way hurt the model results -- it simply means  
           that the code that checks how long the model spends in  
           various routines will give junk values.  
   
     -ts | --ts  
           Produce timing information per timestep  
     -papis | --papis  
           Produce summary MFlop/s (and IPC) with PAPI per timestep  
     -pcls | --pcls  
           Produce summary MFlop/s etc. with PCL per timestep  
     -foolad | --foolad  
           Fool the AD code generator  
     -papi | --papi  
           Performance analysis with PAPI  
     -pcl | --pcl  
           Performance analysis with PCL  
     -hpmt | --hpmt  
           Performance analysis with the HPM Toolkit  
   
     -gsl | --gsl  
           Use GSL to control floating point rounding and precision  
     -devel | --devel  
           Add additional warning and debugging flags for development  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from \$PATH/include, link to libraries  
           from \$PATH/lib and use binaries from \$PATH/bin.  
   
     -es | --es | -embed-source | --embed-source  
           Embed a tarball containing the full source code  
           (including the Makefile, etc.) used to build the  
           executable [off by default]  
   
     -bash NAME  
           Explicitly specify the Bourne or BASH shell to use  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/devel_HOWTO/  
630    
631  EOF  #  Parse the package dependency information
632    get_pdepend_list()  {
633    
634      exit 1      #  strip the comments and then convert the dependency file into
635        #  two arrays: PNAME, DNAME
636        cat $1 | sed -e 's/#.*$//g' \
637            | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
638            > ./.pd_tmp
639        RETVAL=$?
640        if test ! "x${RETVAL}" = x0 ; then
641          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
642          exit 1
643        fi
644        . ./.pd_tmp
645        rm -f ./.pd_tmp
646  }  }
647    
648  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
# Line 644  get_fortran_c_namemangling()  { Line 652  get_fortran_c_namemangling()  {
652      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
653          return 0          return 0
654      fi      fi
655        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
656    
657      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
658        
659      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
660  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
661  EOF  EOF
662      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
663        echo ' '$COMM >> $LOGFILE
664        $COMM >> $LOGFILE 2>&1
665      RETVAL=$?      RETVAL=$?
666      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
667          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
668          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
669    
670  WARNING: C test compile fails   WARNING: C test compile fails
671  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
672  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
673  EOF  EOF
674          return 1          return 1
675      fi      fi
# Line 666  EOF Line 677  EOF
677      RETVAL=$?      RETVAL=$?
678      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
679          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
680          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
681    
682  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
683  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
684  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
685  EOF  EOF
686          return 1          return 1
687      fi      fi
# Line 680  EOF Line 691  EOF
691        call tsub( string )        call tsub( string )
692        end        end
693  EOF  EOF
694      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
695        echo ' '$COMM >> $LOGFILE
696        $COMM >> $LOGFILE 2>&1
697      RETVAL=$?      RETVAL=$?
698      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
699          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
700          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
701    
702  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
703  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
704  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
705  EOF  EOF
706          return 1          return 1
707      fi      fi
# Line 696  EOF Line 709  EOF
709      RETVAL=$?      RETVAL=$?
710      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
711          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
712          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
713    
714  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
715  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
716  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
717  EOF  EOF
718          return 1          return 1
719      fi      fi
# Line 726  EOF Line 739  EOF
739    
740      #  cleanup the testing files      #  cleanup the testing files
741      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
742    
743        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
744    }
745    
746  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
747        echo >> $LOGFILE
748        echo "running: check_HAVE_CLOC()" >> $LOGFILE
749      get_fortran_c_namemangling      get_fortran_c_namemangling
750      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
751  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 746  void FC_NAMEMANGLE(cloc) ( double *curti Line 762  void FC_NAMEMANGLE(cloc) ( double *curti
762   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
763  }  }
764  EOF  EOF
765      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
766        echo $COMM >> $LOGFILE
767        $COMM >> $LOGFILE 2>&1
768      RET_C=$?      RET_C=$?
769      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
770        program hello        program hello
# Line 756  EOF Line 774  EOF
774        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
775        end        end
776  EOF  EOF
777      $FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
778        echo $COMM >> $LOGFILE
779        $COMM >> $LOGFILE 2>&1
780      RET_F=$?      RET_F=$?
781      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
782      RETVAL=$?      RETVAL=$?
783      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
784          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
785      fi      fi
786      rm -f genmake_tc*      rm -f genmake_tc*
787        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
788  }  }
789    
   
790  check_HAVE_SIGREG()  {  check_HAVE_SIGREG()  {
791      if test ! "x$HAVE_SIGREG" = x ; then      if test ! "x$HAVE_SIGREG" = x ; then
792          return          return
793      fi      fi
794        echo >> $LOGFILE
795        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
796      get_fortran_c_namemangling      get_fortran_c_namemangling
797      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
798  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 803  void FC_NAMEMANGLE(sigreg) (int * aip) Line 824  void FC_NAMEMANGLE(sigreg) (int * aip)
824      return;      return;
825  }  }
826  EOF  EOF
827      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
828        echo $COMM >> $LOGFILE
829        $COMM >> $LOGFILE 2>&1
830      RET_C=$?      RET_C=$?
831      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
832        program hello        program hello
# Line 813  EOF Line 836  EOF
836        call sigreg(anint)        call sigreg(anint)
837        end        end
838  EOF  EOF
839      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SIGREG()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
840      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
841      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
842      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
843      RETVAL=$?      RETVAL=$?
844      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
845          HAVE_SIGREG=t          HAVE_SIGREG=t
         DEFINES="$DEFINES -DHAVE_SIGREG"  
846      fi      fi
847      rm -f genmake_tc*      rm -f genmake_tc*
848        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
849  }  }
850    
   
851  check_HAVE_SETRLSTK()  {  check_HAVE_SETRLSTK()  {
     if test "x$HAVE_SETRLSTK" = xt ; then  
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
         return  
     fi    
852      if test ! "x$HAVE_SETRLSTK" = x ; then      if test ! "x$HAVE_SETRLSTK" = x ; then
853          return          return
854      fi      fi
855        echo >> $LOGFILE
856        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
857      get_fortran_c_namemangling      get_fortran_c_namemangling
858      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
859  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 851  void FC_NAMEMANGLE(setrlstk) () Line 869  void FC_NAMEMANGLE(setrlstk) ()
869      return;      return;
870  }  }
871  EOF  EOF
872      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
873        echo $COMM >> $LOGFILE
874        $COMM >> $LOGFILE 2>&1
875      RET_C=$?      RET_C=$?
876      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
877        program hello        program hello
# Line 859  EOF Line 879  EOF
879        call setrlstk()        call setrlstk()
880        end        end
881  EOF  EOF
882      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
883      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
884      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
885      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
886      RETVAL=$?      RETVAL=$?
887      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
888          HAVE_SETRLSTK=t          HAVE_SETRLSTK=t
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
889      fi      fi
890      rm -f genmake_tc*      rm -f genmake_tc*
891        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
892  }  }
893    
   
894  check_HAVE_STAT()  {  check_HAVE_STAT()  {
895        echo >> $LOGFILE
896        echo "running: check_HAVE_STAT()" >> $LOGFILE
897      get_fortran_c_namemangling      get_fortran_c_namemangling
898      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
899  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 895  void FC_NAMEMANGLE(tfsize) ( int *nbyte Line 914  void FC_NAMEMANGLE(tfsize) ( int *nbyte
914          *nbyte = -1;          *nbyte = -1;
915  }  }
916  EOF  EOF
917      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
918        echo $COMM >> $LOGFILE
919        $COMM >> genmake_tc.log 2>&1
920      RET_C=$?      RET_C=$?
921      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
922        program hello        program hello
# Line 904  EOF Line 925  EOF
925        print *," HELLO WORLD", nbyte        print *," HELLO WORLD", nbyte
926        end        end
927  EOF  EOF
928      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_STAT()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
929      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
930      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
931      $COMM >> genmake_tc.log 2>&1      $COMM >> genmake_tc.log 2>&1
932      RETVAL=$?      RETVAL=$?
933      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
934          HAVE_STAT=t          HAVE_STAT=t
         DEFINES="$DEFINES -DHAVE_STAT"  
935      fi      fi
936      rm -f genmake_tc*      rm -f genmake_tc*
937        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
938  }  }
939    
   
940  check_netcdf_libs()  {  check_netcdf_libs()  {
941      if test ! "x$SKIP_NETCDF_CHECK" = x ; then      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
942          return          return
943      fi      fi
944      echo >> genmake_warnings      echo >> $LOGFILE
945      echo "running: check_netcdf_libs()" >> genmake_warnings      echo "running: check_netcdf_libs()" >> $LOGFILE
946      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
947        program fgennc        program fgennc
948  #include "netcdf.inc"  #include "netcdf.inc"
# Line 942  EOF Line 960  EOF
960        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
961        end        end
962  EOF  EOF
963      echo "===  genmake_tnc.F  ===" > genmake_tnc.log      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
964      cat genmake_tnc.F >> genmake_tnc.log      cat genmake_tnc.F >> genmake_tnc.log
965      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log      echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
966      RET_CPP=f      RET_CPP=f
967      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
968      echo "$COMM" >> genmake_tnc.log      echo "$COMM" >> genmake_tnc.log
# Line 960  EOF Line 978  EOF
978      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
979          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
980      RET_COMPILE=$?      RET_COMPILE=$?
981      cat genmake_tnc.log >> genmake_warnings      cat genmake_tnc.log >> $LOGFILE
982    
983      #EH3  Remove test program execution for machines that either disallow      #EH3  Remove test program execution for machines that either disallow
984      #EH3  execution or cannot support it (eg. cross-compilers)      #EH3  execution or cannot support it (eg. cross-compilers)
# Line 971  EOF Line 989  EOF
989    
990      if test "x$RET_COMPILE" = x0 ; then      if test "x$RET_COMPILE" = x0 ; then
991          HAVE_NETCDF=t          HAVE_NETCDF=t
992            echo "check_netcdf: successful" >> $LOGFILE
993      else      else
994          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
995          echo "try again with added '-lnetcdf'" > genmake_tnc.log          echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
996          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
997          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
998          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
# Line 981  EOF Line 1000  EOF
1000              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1001              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1002          RET_COMPILE=$?          RET_COMPILE=$?
1003          cat genmake_tnc.log >> genmake_warnings          echo >> $LOGFILE
1004            cat genmake_tnc.log >> $LOGFILE
1005          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
1006              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
1007              HAVE_NETCDF=t              HAVE_NETCDF=t
1008                echo "check_netcdf: successful" >> $LOGFILE
1009          else          else
1010          # try again with "-lnetcdff" added to the libs          # try again with "-lnetcdff" added to the libs
1011              echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log              echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1012              echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log              echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1013              echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log              echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1014              echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log              echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
# Line 995  EOF Line 1016  EOF
1016                  &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \                  &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1017                  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1                  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1018              RET_COMPILE=$?              RET_COMPILE=$?
1019              cat genmake_tnc.log >> genmake_warnings              echo >> $LOGFILE
1020                cat genmake_tnc.log >> $LOGFILE
1021              if test "x$RET_COMPILE" = x0 ; then              if test "x$RET_COMPILE" = x0 ; then
1022                  LIBS="$LIBS -lnetcdff -lnetcdf"                  LIBS="$LIBS -lnetcdff -lnetcdf"
1023                  HAVE_NETCDF=t                  HAVE_NETCDF=t
1024                    echo "check_netcdf: successful" >> $LOGFILE
1025              fi              fi
1026          fi          fi
1027      fi      fi
1028      rm -f genmake_tnc*      rm -f genmake_tnc*
1029        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1030  }  }
1031    
1032    check_lapack_libs()  {
1033        if test ! "x$SKIP_LAPACK_CHECK" = x ; then
1034            return
1035        fi
1036        echo >> $LOGFILE
1037        echo "running: check_lapack_libs()" >> $LOGFILE
1038        cat <<EOF > genmake_tla.F
1039          program fgenla
1040          integer info
1041          integer ipiv( 2 )
1042          double precision ab( 4, 2 ), b( 2 )
1043          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1044          data b / 1., 1. /
1045          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1046          IF (info .NE. 0) write(*,*) 'Error:', info
1047          write(*,*) b
1048          end
1049    EOF
1050        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1051        cat genmake_tla.F >> genmake_tla.log
1052        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1053        RET_CPP=f
1054        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1055        echo "$COMM" >> genmake_tla.log
1056        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1057        if test "x$RET_CPP" = xf ; then
1058            echo "  WARNING: CPP failed to pre-process the lapack test." \
1059                >> genmake_tla.log
1060            echo "    Please check that \$INCLUDES is properly set." \
1061                >> genmake_tla.log
1062        fi
1063        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1064        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1065        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1066            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1067        RET_COMPILE=$?
1068        cat genmake_tla.log >> $LOGFILE
1069    
1070        # test program execution not always possible (see check_netcdf_libs)
1071        #
1072        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1073        #RETVAL=$?
1074        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1075    
1076        if test "x$RET_COMPILE" = x0 ; then
1077            HAVE_LAPACK=t
1078            echo "check_lapack: successful" >> $LOGFILE
1079        else
1080            # try again with "-llapack" added to the libs
1081            echo "==> try again with added '-llapack'" > genmake_tla.log
1082            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1083            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1084            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1085            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1086                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1087                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1088            RET_COMPILE=$?
1089            echo >> $LOGFILE
1090            cat genmake_tla.log >> $LOGFILE
1091            if test "x$RET_COMPILE" = x0 ; then
1092                LIBS="$LIBS -llapack"
1093                HAVE_LAPACK=t
1094                echo "check_lapack: successful" >> $LOGFILE
1095            else
1096            # try again with "-lf77blas -lcblas" added to the libs
1097                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1098                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1099                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1100                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1101                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1102                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1103                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1104                RET_COMPILE=$?
1105                echo >> $LOGFILE
1106                cat genmake_tla.log >> $LOGFILE
1107                if test "x$RET_COMPILE" = x0 ; then
1108                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1109                    HAVE_LAPACK=t
1110                    echo "check_lapack: successful" >> $LOGFILE
1111                else
1112                # try again with "-latlas" added to the libs
1113                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1114                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1115                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1116                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1117                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1118                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1119                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1120                    RET_COMPILE=$?
1121                    echo >> $LOGFILE
1122                    cat genmake_tla.log >> $LOGFILE
1123                    if test "x$RET_COMPILE" = x0 ; then
1124                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1125                        HAVE_LAPACK=t
1126                        echo "check_lapack: successful" >> $LOGFILE
1127                    fi
1128                fi
1129            fi
1130        fi
1131        rm -f genmake_tla*
1132        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1133    }
1134    
1135    
1136  ###############################################################################  ###############################################################################
# Line 1028  ENABLE= Line 1154  ENABLE=
1154  DISABLE=  DISABLE=
1155  # MAKEFILE=  # MAKEFILE=
1156  # MAKEDEPEND=  # MAKEDEPEND=
1157  PDEPEND=  PKG_DEPEND=
1158  DUMPSTATE=t  PKG_GROUPS=
1159  PDEFAULT=  DUMPSTATE=f
1160  OPTFILE=  OPTFILE=
1161  INCLUDES="-I. $INCLUDES"  INCLUDES="-I. $INCLUDES"
1162  FFLAGS=  FFLAGS=
1163  FOPTIM=  FOPTIM=
1164    FEXTRAFLAGS=
1165    USE_EXTENDED_SRC=
1166    EXTENDED_SRC_FLAG=
1167    GET_FC_VERSION=
1168  CFLAGS=  CFLAGS=
1169  KFLAGS1=  KFLAGS1=
1170  KFLAGS2=  KFLAGS2=
# Line 1045  NOOPTFILES= Line 1175  NOOPTFILES=
1175  NOOPTFLAGS=  NOOPTFLAGS=
1176  MPI=  MPI=
1177  MPIPATH=  MPIPATH=
1178    OMP=
1179    OMPFLAG=
1180    USE_R4=
1181  TS=  TS=
1182  PAPIS=  PAPIS=
1183  PCLS=  PCLS=
# Line 1066  HAVE_STAT= Line 1199  HAVE_STAT=
1199  HAVE_NETCDF=  HAVE_NETCDF=
1200  HAVE_ETIME=  HAVE_ETIME=
1201  IGNORE_TIME=  IGNORE_TIME=
1202    HAVE_LAPACK=
1203    
1204  MODS=  MODS=
1205  TOOLSDIR=  TOOLSDIR=
# Line 1088  MACHINE=`uname -a` Line 1222  MACHINE=`uname -a`
1222  EXECUTABLE=  EXECUTABLE=
1223  EXEHOOK=  EXEHOOK=
1224  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1225  IEEE=  IEEE=
1226  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1227      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
# Line 1109  FTL_TAF_FLAGS= Line 1242  FTL_TAF_FLAGS=
1242  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1243  TAMC_EXTRA=  TAMC_EXTRA=
1244    
   
1245  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1246  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS DISABLE ENABLE MAKEFILE MAKEDEPEND PLATFORM"
1247  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CC MPI OMP USE_R4 TS PAPIS PCLS PAPI PCL HPMT IEEE DEVEL GSL FEXTRAFLAGS"
1248    gm_s3="ROOTDIR STANDARDDIRS MODS DUMPSTATE"
1249    
1250  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1251  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM"
1252  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1253  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s6="TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1254  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="PWD THISHOST THISUSER THISDATE THISVER MACHINE"
1255  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s8="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK"
1256    
1257  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1258  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1259  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1260  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA"
1261    
1262  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1263  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1264    
1265  cat <<EOF  cat <<EOF
1266    
1267  GENMAKE :  GENMAKE :
1268    
1269  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1270  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1271    or for more detail see the Developer's HOWTO manual at:
1272    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1273    
1274  EOF  EOF
1275    
1276    LOGFILE="genmake.log"
1277    #- clean-up previous genmake logfiles:
1278    rm -f genmake_state genmake_*optfile $LOGFILE
1279    
1280  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1281  gm_local="genmake_local"  gm_local="genmake_local"
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
1282  printf "  getting local config information:  "  printf "  getting local config information:  "
1283  if test -f $gm_local ; then  if test -f $gm_local ; then
1284      echo "using $gm_local"      echo "using $gm_local"
# Line 1159  else Line 1290  else
1290  fi  fi
1291    
1292  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1293  #parse_options  #parse_options
1294  ac_prev=  ac_prev=
1295  for ac_option in "$@" ; do  for ac_option in "$@" ; do
# Line 1180  for ac_option in "$@" ; do Line 1302  for ac_option in "$@" ; do
1302          ac_prev=          ac_prev=
1303          continue          continue
1304      fi      fi
1305        
1306      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1307        
1308      case $ac_option in      case $ac_option in
1309                    
1310          -help | --help | -h | --h)          -help | --help | -h | --h)
# Line 1201  for ac_option in "$@" ; do Line 1323  for ac_option in "$@" ; do
1323              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1324                    
1325          -pdepend | --pdepend)          -pdepend | --pdepend)
1326              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1327          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1328              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1329                    
1330          -pdefault | --pdefault)          -pgroups | --pgroups)
1331              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1332          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1333              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1334                    
1335          -make | --make | -m | --m)          -make | --make | -m | --m)
1336              ac_prev=MAKE ;;              ac_prev=MAKE ;;
# Line 1287  for ac_option in "$@" ; do Line 1409  for ac_option in "$@" ; do
1409          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1410              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
1411                    
1412            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1413                USE_R4=true ;;
1414    
1415          -ieee | --ieee)          -ieee | --ieee)
1416              IEEE=true ;;              IEEE=true ;;
1417          -noieee | --noieee)          -noieee | --noieee)
1418              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1419            -devel | --devel)
1420                IEEE=true ; DEVEL=true ;;
1421            -gsl | --gsl)
1422                GSL=true ;;
1423    
1424          -ts | --ts)          -ts | --ts)
1425              TS=true ;;              TS=true ;;
# Line 1307  for ac_option in "$@" ; do Line 1436  for ac_option in "$@" ; do
1436          -hpmt | --hpmt)          -hpmt | --hpmt)
1437              HPMT=true ;;              HPMT=true ;;
1438    
         -gsl | --gsl)  
             GSL=true ;;  
   
         -devel | --devel)  
             DEVEL=true ;;  
   
1439          -mpi | --mpi)          -mpi | --mpi)
1440              MPI=true ;;              MPI=true ;;
1441          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1442              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1443              MPI=true ;;              MPI=true ;;
1444                    
1445  #       -jam | --jam)          -omp | --omp)
1446  #           JAM=1 ;;              OMP=true ;;
1447  #       -nojam | --nojam)          -omp=* | --omp=*)
1448  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1449                OMP=true ;;
1450                    
1451          -ds | --ds)          -ds | --ds)
1452              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1453                    
1454            -extra_flag | --extra_flag)
1455                ac_prev=FEXTRAFLAGS ;;
1456            -extra_flag=* | --extra_flag=*)
1457                FEXTRAFLAGS=$ac_optarg ;;
1458            
1459          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1460              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1461          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 1354  for ac_option in "$@" ; do Line 1483  for ac_option in "$@" ; do
1483              ;;              ;;
1484                    
1485      esac      esac
       
 done  
1486    
1487    done
1488    
1489  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1490      echo      echo
1491      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1492      echo "  file.  This file format is no longer supported.  For directions on"      echo "  file.  This file format is no longer supported.  For directions on"
1493      echo "  how to setup and use the new \"genmake2\" script, please see:"      echo "  how to setup and use the new \"genmake2\" script, please see:"
1494      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1495      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1496      echo "WARNING: ignore \"./.genmakerc\" and continue."      echo "WARNING: ignore \"./.genmakerc\" and continue."
1497      echo      echo
1498  fi  fi
1499    
1500  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
# Line 1378  if test "x${ROOTDIR}" = x ; then Line 1506  if test "x${ROOTDIR}" = x ; then
1506          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1507              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1508                  ROOTDIR=$d                  ROOTDIR=$d
1509                  printf "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1510                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1511                  break                  break
1512              fi              fi
1513          done          done
# Line 1397  if test ! -d ${ROOTDIR} ; then Line 1525  if test ! -d ${ROOTDIR} ; then
1525  fi  fi
1526    
1527  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1528  if test -f "${ROOTDIR}/doc/tag-index" ; then  version_file="${ROOTDIR}/doc/tag-index"
1529      THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`  if test -f $version_file ; then
1530        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1531    #-  remove ./BUILD_INFO.h file if older than version_file
1532        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1533            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1534            rm -f ./BUILD_INFO.h
1535        fi
1536  fi  fi
1537    
1538  if test "x$MAKEFILE" = x ; then  if test "x$MAKEFILE" = x ; then
1539      MAKEFILE="Makefile"      MAKEFILE="Makefile"
1540  fi  fi
1541    
1542  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:"
1543  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1544      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1545          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1546          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1547          find_possible_configs          find_possible_optfile
1548      else      else
1549          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1550      fi      fi
# Line 1425  if test "x$OPTFILE" != xNONE ; then Line 1559  if test "x$OPTFILE" != xNONE ; then
1559              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1560              exit 1              exit 1
1561          fi          fi
1562          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1563              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1564          fi          fi
1565      else      else
# Line 1434  if test "x$OPTFILE" != xNONE ; then Line 1568  if test "x$OPTFILE" != xNONE ; then
1568      fi      fi
1569  fi  fi
1570    
1571  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1572  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1573      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
1574          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
# Line 1452  if test "x${AD_OPTFILE}" != xNONE ; then Line 1586  if test "x${AD_OPTFILE}" != xNONE ; then
1586              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1587              exit 1              exit 1
1588          fi          fi
1589          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1590              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1591          fi          fi
1592      else      else
# Line 1480  Error: no Fortran compiler: please speci Line 1614  Error: no Fortran compiler: please speci
1614  EOF  EOF
1615      exit 1      exit 1
1616  fi  fi
1617    if test "x$GET_FC_VERSION" != x ; then
1618      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1619      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1620      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1621      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1622      if test -s genmake_fc_vers1 ; then
1623        cat genmake_fc_vers1 >> $LOGFILE
1624      else
1625        cat genmake_fc_vers2 >> $LOGFILE
1626      fi
1627      echo "<-- compiler version ----" >> $LOGFILE
1628      rm -f genmake_fc_vers1 genmake_fc_vers2
1629    fi
1630    
1631  if test "x$CC" = x ; then  if test "x$CC" = x ; then
1632      CC=cc      look_for_C_compilers
 #     cat <<EOF 1>&2  
 # Error: no C compiler: please specify using one of the following:  
 #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"  
 #   2) the "-cc=XXX" command-line option  
 #   3) the "./genmake_local" file  
 # EOF  
 #     exit 1  
1633  fi  fi
1634    
1635  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1636      LINK=$FC      LINK=$FC
1637  fi  fi
# Line 1497  if test "x$MAKE" = x ; then Line 1639  if test "x$MAKE" = x ; then
1639      MAKE="make"      MAKE="make"
1640  fi  fi
1641  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1642      CPP=cpp      CPP="cpp -traditional -P"
1643  fi  fi
1644  #EH3 === UGLY ===  #EH3 === UGLY ===
1645  #  The following is an ugly little hack to check for $CPP in /lib/ and  #  The following is an ugly little hack to check for $CPP in /lib/ and
# Line 1524  EOF Line 1666  EOF
1666  else  else
1667      rm -f test_cpp      rm -f test_cpp
1668  fi  fi
1669    
1670  look_for_makedepend  look_for_makedepend
1671    
1672    #  Check that soft-link command is set and usable
1673  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1674      LN="ln -s"      LN="ln -s"
1675  fi  fi
# Line 1534  RETVAL=$? Line 1679  RETVAL=$?
1679  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1680      cat <<EOF 1>&2      cat <<EOF 1>&2
1681    
1682  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1683    command in the optfile.    command in the optfile.
1684    
1685  EOF  EOF
# Line 1554  if test ! "x$MPI" = x ; then Line 1699  if test ! "x$MPI" = x ; then
1699        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1700        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1701  fi  fi
1702    if test ! "x$OMP" = x ; then
1703          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1704          FFLAGS="$FFLAGS $OMPFLAG"
1705          F90FLAGS="$F90FLAGS $OMPFLAG"
1706          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1707    fi
1708    
1709    if test ! "x$USE_R4" = x ; then
1710          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1711          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1712    fi
1713    
1714  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1715        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
# Line 1562  if test ! "x$TS" = x ; then Line 1718  if test ! "x$TS" = x ; then
1718        else        else
1719              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1720        fi        fi
1721          PACKAGES="$PACKAGES showflops"
1722  fi  fi
1723  if test ! "x$PAPIS" = x ; then  if test ! "x$PAPIS" = x ; then
1724        echo "  Turning on PAPI flop summary per timestep"        echo "  Turning on PAPI flop summary per timestep"
# Line 1573  if test ! "x$PAPIS" = x ; then Line 1730  if test ! "x$PAPIS" = x ; then
1730        fi        fi
1731        INCLUDES="$INCLUDES $PAPIINC"        INCLUDES="$INCLUDES $PAPIINC"
1732        LIBS="$LIBS $PAPILIB"        LIBS="$LIBS $PAPILIB"
1733          PACKAGES="$PACKAGES showflops"
1734  fi  fi
1735  if test ! "x$PCLS" = x ; then  if test ! "x$PCLS" = x ; then
1736        echo "  Turning on PCL counter summary per timestep"        echo "  Turning on PCL counter summary per timestep"
# Line 1584  if test ! "x$PCLS" = x ; then Line 1742  if test ! "x$PCLS" = x ; then
1742        fi        fi
1743        INCLUDES="$INCLUDES $PCLINC"        INCLUDES="$INCLUDES $PCLINC"
1744        LIBS="$LIBS $PCLLIB"        LIBS="$LIBS $PCLLIB"
1745          PACKAGES="$PACKAGES showflops"
1746  fi  fi
1747  if test ! "x$PAPI" = x ; then  if test ! "x$PAPI" = x ; then
1748        if test ! "x$PAPIS" = x ; then        if test ! "x$PAPIS" = x ; then
# Line 1632  if test ! "x$GSL" = x ; then Line 1791  if test ! "x$GSL" = x ; then
1791        INCLUDES="$INCLUDES $GSLINC"        INCLUDES="$INCLUDES $GSLINC"
1792        LIBS="$LIBS $GSLLIB"        LIBS="$LIBS $GSLLIB"
1793  fi  fi
1794    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1795    if test ! "x$USE_EXTENDED_SRC" = x ; then
1796          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1797          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1798    fi
1799    
1800  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1801  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
# Line 1698  rm -f genmake_tcomp* Line 1862  rm -f genmake_tcomp*
1862  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1863  check_HAVE_CLOC  check_HAVE_CLOC
1864  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1865        DEFINES="$DEFINES -DHAVE_CLOC"
1866      echo "yes"      echo "yes"
1867  else  else
1868      echo "no"      echo "no"
# Line 1712  rm -f genmake_t* Line 1877  rm -f genmake_t*
1877  printf "  Can we unlimit the stack size using $FC...  "  printf "  Can we unlimit the stack size using $FC...  "
1878  check_HAVE_SETRLSTK  check_HAVE_SETRLSTK
1879  if test "x$HAVE_SETRLSTK" = xt ; then  if test "x$HAVE_SETRLSTK" = xt ; then
1880        DEFINES="$DEFINES -DHAVE_SETRLSTK"
1881      echo "yes"      echo "yes"
1882  else  else
1883      echo "no"      echo "no"
# Line 1721  rm -f genmake_t* Line 1887  rm -f genmake_t*
1887  printf "  Can we register a signal handler using $FC...  "  printf "  Can we register a signal handler using $FC...  "
1888  check_HAVE_SIGREG  check_HAVE_SIGREG
1889  if test "x$HAVE_SIGREG" = xt ; then  if test "x$HAVE_SIGREG" = xt ; then
1890        DEFINES="$DEFINES -DHAVE_SIGREG"
1891      echo "yes"      echo "yes"
1892  else  else
1893      echo "no"      echo "no"
# Line 1730  rm -f genmake_t* Line 1897  rm -f genmake_t*
1897  printf "  Can we use stat() through C calls...  "  printf "  Can we use stat() through C calls...  "
1898  check_HAVE_STAT  check_HAVE_STAT
1899  if test "x$HAVE_STAT" != x ; then  if test "x$HAVE_STAT" != x ; then
1900        DEFINES="$DEFINES -DHAVE_STAT"
1901      echo "yes"      echo "yes"
1902  else  else
1903      echo "no"      echo "no"
# Line 1739  rm -f genmake_t* Line 1907  rm -f genmake_t*
1907  printf "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
1908  check_netcdf_libs  check_netcdf_libs
1909  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
1910        DEFINES="$DEFINES -DHAVE_NETCDF"
1911        echo "yes"
1912    else
1913        echo "no"
1914    fi
1915    
1916    printf "  Can we create LAPACK-enabled binaries...  "
1917    check_lapack_libs
1918    if test "x$HAVE_LAPACK" != x ; then
1919        DEFINES="$DEFINES -DHAVE_LAPACK"
1920      echo "yes"      echo "yes"
1921  else  else
1922      echo "no"      echo "no"
# Line 1750  if test "x$EMBED_SRC" = xt ; then Line 1928  if test "x$EMBED_SRC" = xt ; then
1928  fi  fi
1929  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
1930      ENABLE="$ENABLE embed_files"      ENABLE="$ENABLE embed_files"
1931    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
1932  fi  fi
1933    
   
1934  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1935  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1936  for d in $MODS ; do  for d in $MODS ; do
1937      if test ! -d $d ; then      if test ! -d $d ; then
1938          echo          echo
1939          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1940          exit 1          exit 1
1941      else      else
1942          printf " $d"          printf "$d "
1943          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1944          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1945      fi      fi
1946  done  done
1947  echo  echo
1948    
1949  if test "x${PLATFORM}" = x ; then  #if test "x${PLATFORM}" = x ; then
1950      PLATFORM=$p_PLATFORM  #    PLATFORM=$p_PLATFORM
1951  fi  #fi
1952    
1953  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1954      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
# Line 1810  ERROR: neither of the two default script Line 1988  ERROR: neither of the two default script
1988      ${TOOLSDIR}/set64bitConst.sh      ${TOOLSDIR}/set64bitConst.sh
1989      ${TOOLSDIR}/set64bitConst.csh      ${TOOLSDIR}/set64bitConst.csh
1990    
1991    are working so please check paths or specify (with \$S64) a    are working so please check paths or specify (with \$S64) a
1992    working version of this script.    working version of this script.
1993    
1994  EOF  EOF
# Line 1822  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD Line 2000  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD
2000    
2001  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2002    
2003    #  Set Standard Code Directories:
2004    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2005        STANDARDDIRS="eesupp model"
2006    fi
2007    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2008    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2009    ckM=$?
2010    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2011    ckE=$?
2012    if test $ckM = 0 -a $ckE = 1 ; then
2013        STANDARDDIRS="$STANDARDDIRS eesupp"
2014    fi
2015    
2016  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2017  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2018  #  they appear as regular source code  #  they appear as regular source code
2019  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2020      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2021      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2022        ) > make_eesupp.errors 2>&1
2023      RETVAL=$?      RETVAL=$?
2024      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2025          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 1842  fi Line 2034  fi
2034  for pdir in exch2 regrid ; do  for pdir in exch2 regrid ; do
2035      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2036          echo "  Making source files in pkg/${pdir} from templates"          echo "  Making source files in pkg/${pdir} from templates"
2037          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2038            ) > make_${pdir}.errors 2>&1
2039          RETVAL=$?          RETVAL=$?
2040          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
2041              rm -f make_${pdir}.errors              rm -f make_${pdir}.errors
# Line 1855  for pdir in exch2 regrid ; do Line 2048  for pdir in exch2 regrid ; do
2048  done  done
2049    
2050  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2051  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2052      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2053      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2054          PDEPEND=$tmp  fi
2055      else  if  test "x${PKG_DEPEND}" = x ; then
2056          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2057          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2058  else  else
2059      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2060          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2061          exit 1          exit 1
2062      fi      fi
2063        echo "  getting package dependency info from  $PKG_DEPEND"
2064    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2065        get_pdepend_list $PKG_DEPEND
2066  fi  fi
2067  echo "  getting package dependency info from  $PDEPEND"  
2068  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2069  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2070  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2071      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2072      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2073  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2074  if test ! "x${RETVAL}" = x0 ; then  fi
2075      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2076      exit 1          echo "Warning:  No package groups information was specified."
2077            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2078    else
2079        if test ! -r ${PKG_GROUPS} ; then
2080            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2081            exit 1
2082        fi
2083        echo "  getting package groups info from      $PKG_GROUPS"
2084  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
2085    
2086  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2087  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2088  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2089  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2090      for i in "." $MODS ; do      for i in "." $MODS ; do
2091          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2092                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2093                  break                  break
2094          fi          fi
2095      done      done
2096  fi  fi
2097  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2098      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2099  fi      if test "x${PKG_GROUPS}" = x ; then
2100  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2101      echo "    default packages file disabled"          exit 1
2102        fi
2103  else  else
2104      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2105          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2106            exit 1
2107      else      else
2108          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2109          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2110          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2111          RETVAL=$?          RETVAL=$?
2112          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2113              printf "Error: can't parse default package list "              printf "Error: can't parse package list "
2114              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2115              exit 1              exit 1
2116          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         RET=1  
         while test $RET = 1 ; do expand_pkg_groups; RET=$?; done  
         echo "    after group expansion packages are:  $PACKAGES"  
2117      fi      fi
2118  fi  fi
2119    for i in $pkg_list ; do
2120        PACKAGES="$PACKAGES $i"
2121    done
2122    echo     "    before group expansion packages are:$PACKAGES"
2123    if test "x${PKG_GROUPS}" != x ; then
2124        RET=1
2125        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2126        echo "    after group expansion packages are: $PACKAGES"
2127    fi
2128    
2129  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2130    echo "" > ./.tmp_pack
2131  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2132      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2133  done  done
# Line 1951  PACKAGES="$PACKAGES $ENABLE" Line 2155  PACKAGES="$PACKAGES $ENABLE"
2155  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2156      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2157      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2158          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2159          exit 1          exit 1
2160      fi      fi
2161      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
# Line 1961  for i in `grep -v "-" ./.tmp_pack | sort Line 2165  for i in `grep -v "-" ./.tmp_pack | sort
2165      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2166  done  done
2167  rm -f ./.tmp_pack  rm -f ./.tmp_pack
2168  echo "    packages are:  $PACKAGES"  echo "    packages are: $PACKAGES"
2169    
2170  #  Check for package MNC: if NetCDF is available, then build the MNC  #  Check for package MNC: if NetCDF is available, then build the MNC
2171  #  template files ; otherwise, delete mnc from the list of packages.  #  template files ; otherwise, delete mnc from the list of packages.
2172  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2173  RETVAL=$?  mnc_in=$?
2174  if test "x$RETVAL" = x0 ; then  if test "x$HAVE_NETCDF" != xt ; then
2175      if test "x$HAVE_NETCDF" != xt ; then      if test "x$mnc_in" = x0 ; then
2176          cat <<EOF          cat <<EOF
   
2177  *********************************************************************  *********************************************************************
2178  WARNING: the "mnc" package was enabled but tests failed to compile  WARNING: the "mnc" package was enabled but tests failed to compile
2179    NetCDF applications.  Please check that:    NetCDF applications.  Please check that:
2180    
2181    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2182    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2183         NetCDF library to link against.         NetCDF library to link against.
2184    
2185    Due to this failure, the "mnc" package is now DISABLED.    Due to this failure, the "mnc" package is now DISABLED.
2186  *********************************************************************  *********************************************************************
   
2187  EOF  EOF
2188          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2189          DISABLE="$DISABLE mnc"          DISABLE="$DISABLE mnc"
2190      else      else
2191          ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1      #  this prevent to add mnc (due to pdepend rules) if not available
2192          RETVAL=$?          DISABLE="$DISABLE mnc"
2193          if test "x${RETVAL}" = x0 ; then      fi
2194              rm -f make_mnc.errors  else
2195        # we have NetCDF, we try to build MNC template files
2196        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2197        RETVAL=$?
2198        if test "x${RETVAL}" = x0 ; then
2199            rm -f make_mnc.errors
2200        else
2201            echo "Error: problem encountered while building source files in pkg/mnc:"
2202            cat make_mnc.errors 1>&2
2203            if test "x$mnc_in" = x0 ; then
2204                exit 1
2205          else          else
2206              echo "Error: problem encountered while building source files in pkg/mnc:"              DISABLE="$DISABLE mnc"
             cat make_mnc.errors 1>&2  
             exit 1  
2207          fi          fi
2208      fi      fi
2209  fi  fi
2210    
2211  #  Check for package PROFILES: if NetCDF is not available,  #  Check for package PROFILES: if NetCDF is not available,
2212  #  then delete profiles from the list of available packages.  #  then delete profiles from the list of available packages.
2213  echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1  if test "x$HAVE_NETCDF" != xt ; then
2214  RETVAL=$?      echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2215  if test "x$RETVAL" = x0 ; then      RETVAL=$?
2216      if test "x$HAVE_NETCDF" != xt ; then      if test "x$RETVAL" = x0 ; then
2217          cat <<EOF          cat <<EOF
   
2218  *********************************************************************  *********************************************************************
2219  WARNING: the "profiles" package was enabled but tests failed to  WARNING: the "profiles" package was enabled but tests failed to
2220    compile NetCDF applications.  Please check that:    compile NetCDF applications.  Please check that:
2221    
2222    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2223    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2224         NetCDF library to link against.         NetCDF library to link against.
2225    
2226    Due to this failure, the "profiles" package is now DISABLED.    Due to this failure, the "profiles" package is now DISABLED.
2227  *********************************************************************  *********************************************************************
   
2228  EOF  EOF
2229          PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2230          DISABLE="$DISABLE profiles"          DISABLE="$DISABLE profiles"
2231        else
2232        #  this prevent to add profiles (due to pdepend rules) if not available
2233            DISABLE="$DISABLE profiles"
2234        fi
2235    fi
2236    
2237    #  Check for package RADTRANS: if LAPACK is not available,
2238    #  then issue a warning that the direct radtrans solver is not available.
2239    if test "x$HAVE_LAPACK" != xt ; then
2240        echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1
2241        RETVAL=$?
2242        if test "x$RETVAL" = x0 ; then
2243            cat <<EOF
2244    *********************************************************************
2245    WARNING: the "radtrans" package was enabled but tests failed to
2246      compile LAPACK applications.  This means that the direct radtrans
2247      solver is not available and compilation will fail if it is enabled.
2248      If you want to use the direct solver, please check that:
2249    
2250      1) LAPACK is correctly installed for this compiler and
2251      2) the LIBS variable (within the "optfile") specifies the correct
2252         LAPACK library to link against.
2253    *********************************************************************
2254    EOF
2255      fi      fi
2256  fi  fi
2257    
2258  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2259  ck=    echo "  applying package dependency rules"
2260  while test "x$ck" != xtt ; do    ck=
2261      while test "x$ck" != xtt ; do
2262      i=0      i=0
2263      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2264      rtot=$nname      rtot=$nname
2265      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2266    
2267          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2268          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 2041  while test "x$ck" != xtt ; do Line 2274  while test "x$ck" != xtt ; do
2274                  pin="t"                  pin="t"
2275              fi              fi
2276          done          done
2277            #  or in the current $STANDARDDIRS list?
2278            for p in $STANDARDDIRS ; do
2279                if test "x$p" = "x$pname" ; then pin="t" ; fi
2280            done
2281    
2282          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2283          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 2063  while test "x$ck" != xtt ; do Line 2300  while test "x$ck" != xtt ; do
2300    
2301          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2302          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2303                #echo "   " $pname ": need to add :" $dname
2304              in_dis="f"              in_dis="f"
2305              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2306                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 2083  while test "x$ck" != xtt ; do Line 2321  while test "x$ck" != xtt ; do
2321          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2322          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2323              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2324              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2325              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2326              exit 1              exit 1
2327          fi          fi
# Line 2091  while test "x$ck" != xtt ; do Line 2329  while test "x$ck" != xtt ; do
2329          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2330      done      done
2331      ck=$ck"t"      ck=$ck"t"
2332  done    done
2333  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2334    fi
2335  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2336      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2337      if test -d $adr ; then      if test -d $adr ; then
# Line 2109  done Line 2348  done
2348    
2349  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2350  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2351  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2352  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2353  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2354  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2355  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 2138  for i in $PACKAGES ; do Line 2377  for i in $PACKAGES ; do
2377  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2378    
2379  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2380      case $i in      case $i in
2381          aim_v23)          aim_v23)
2382              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2383              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
# Line 2148  for i in $PACKAGES ; do Line 2387  for i in $PACKAGES ; do
2387    
2388  done  done
2389    
2390  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2391  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2392  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2393      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2394          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 2207  fi Line 2443  fi
2443    
2444  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2445  #  compiler.  #  compiler.
2446  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2447      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2448  fi  fi
2449  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2450    touch adSrcFiles.tmp
2451  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2452      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2453      for j in $list_files ; do      for j in $list_files ; do
2454          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2455      done      done
2456  done  done
2457  if test ! "x"$FS = "x.f" ; then  if test ! "x"$FS = "x.f" ; then
2458      cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f      cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2459      mv -f ad_files_f ad_files      mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2460  fi  fi
2461    
2462  echo  echo
# Line 2243  if test ! "x$DIVA" = x ; then Line 2480  if test ! "x$DIVA" = x ; then
2480          fi          fi
2481          MPIINCLUDEDIR='$MPIHOME/include'          MPIINCLUDEDIR='$MPIHOME/include'
2482      fi      fi
2483        
2484      if test -r $MPIINCLUDEDIR/mpif.h ; then      if test -r $MPIINCLUDEDIR/mpif.h ; then
2485          for i in $MPI_HEADER_FILES; do          for i in $MPI_HEADER_FILES; do
2486              cp -p $MPIINCLUDEDIR/$i ./mpi_headers              cp -p $MPIINCLUDEDIR/$i ./mpi_headers
# Line 2277  if test ! -r ".links.tmp/foo" ; then Line 2514  if test ! -r ".links.tmp/foo" ; then
2514      exit 1      exit 1
2515  fi  fi
2516  rm -f .links.tmp/foo  rm -f .links.tmp/foo
2517    
2518    if test "x$OPENAD" != x ; then
2519        OAD_DONT_COMPILE="/dev/null"
2520        OAD_DONT_TRANSFORM="/dev/null"
2521        OAD_KEEP_ORIGINAL="/dev/null"
2522        OAD_CB2M_FILES="/dev/null"
2523        echo "  looking for dontCompile file:  "
2524        for i in "." $MODS ; do
2525            if test -r $i"/dontCompile" ; then
2526                OAD_DONT_COMPILE=$i"/dontCompile"
2527                echo "     found $OAD_DONT_COMPILE"
2528                break
2529            fi
2530        done
2531        echo "  looking for dontTransform file:  "
2532        for i in "." $MODS ; do
2533            if test -r $i"/dontTransform" ; then
2534                OAD_DONT_TRANSFORM=$i"/dontTransform"
2535                echo "     found $OAD_DONT_TRANSFORM"
2536                break
2537            fi
2538        done
2539        echo "  looking for keepOriginal file:  "
2540        for i in "." $MODS ; do
2541            if test -r $i"/keepOriginal" ; then
2542                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2543                echo "     found $OAD_KEEP_ORIGINAL"
2544                break
2545            fi
2546        done
2547        echo "  looking for cb2mFiles:  "
2548        for i in "." $MODS ; do
2549            if test -r $i"/cb2mFiles" ; then
2550                OAD_CB2M_FILES=$i"/cb2mFiles"
2551                echo "     found $OAD_CB2M_FILES"
2552                break
2553            fi
2554        done
2555        echo "   OpenAD exceptions:  "
2556    fi
2557    
2558  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2559  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2560  printf 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2561  printf 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2562  printf 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2563  printf 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2564  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2565    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2566  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2567  for d in $alldirs ; do  for d in $alldirs ; do
2568      deplist=      deplist=
2569      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2570      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2571        if test "x$OPENAD" != x ; then
2572            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2573        fi
2574      for sf in $sfiles ; do      for sf in $sfiles ; do
2575          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2576              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
# Line 2323  for d in $alldirs ; do Line 2605  for d in $alldirs ; do
2605                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2606                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2607                      case $extn in                      case $extn in
2608                          F)                        F)
2609                              echo    " \\"  >> srclist.inc                          echo    " \\"  >> F77srclist.tmp
2610                              printf " $sf" >> srclist.inc                          printf " $sf" >> F77srclist.tmp
2611                              ;;                          if test "x$OPENAD" != x ; then
2612                          F90)                              basename=${sf%%.F}
2613                              echo    " \\"  >> f90srclist.inc                              isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2614                              printf " $sf" >> f90srclist.inc                              if test -z "$isAD" ; then
2615                              ;;                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2616                          c)                                  if test -z "$toBeIgnored" ; then
2617                              echo    " \\"  >> csrclist.inc                                      echo    " \\"  >> nonADF77srclist.tmp
2618                              printf " $sf" >> csrclist.inc                                      printf " $sf" >> nonADF77srclist.tmp
2619                              ;;                                  else
2620                          h)                                      echo "    not to be compiled   :  $sf"
2621                              echo    " \\"  >> hlist.inc                                  fi
2622                              printf " $sf" >> hlist.inc                              else # file is initially listed as an AD file we want to exclude it
2623                              ;;                                   # or we want to retain the untransformed version
2624                          flow)                                  notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2625                              echo    " \\"  >> ad_flow_files.inc                                  untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2626                              printf " $sf" >> ad_flow_files.inc                                  if test -n "$notToBeTransformed"; then
2627                              ;;                                      echo "    not to be transformed:  $sf"
2628                      esac                                  fi
2629                  fi                                  if test -n "$untransformedVersionToBeKept" ; then
2630                                        echo "    original to be kept  :  $sf"
2631                                    fi
2632                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2633                                        echo    " \\"  >> nonADF77srclist.tmp
2634                                        printf " $sf" >> nonADF77srclist.tmp
2635                                    fi
2636                                fi
2637                            fi
2638                            ;;
2639                        F90)
2640                            echo    " \\"  >> F90srclist.tmp
2641                            printf " $sf" >> F90srclist.tmp
2642                            ;;
2643                        c)
2644                            echo    " \\"  >> csrclist.tmp
2645                            printf " $sf" >> csrclist.tmp
2646                            ;;
2647                        h)
2648                            echo    " \\"  >> hsrclist.tmp
2649                            printf " $sf" >> hsrclist.tmp
2650                            ;;
2651                        flow)
2652                            echo    " \\"  >> ad_flow_files.tmp
2653                            printf " $sf" >> ad_flow_files.tmp
2654                            ;;
2655                       esac
2656                    fi
2657              fi              fi
2658          fi          fi
2659      done      done
2660      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2661          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2662            echo "" >> srclinks.tmp
2663          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2664          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2665          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2666    # This may happen when make thinks that a header file has to be "remade"
2667    # because a module it depends on has changed.  In this case we do nothing.
2668            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2669          fi
2670      fi      fi
2671  done  done
2672  rm -rf .links.tmp  rm -rf .links.tmp
2673  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2674  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2675  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2676  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2677  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2678    echo "" >> ad_flow_files.tmp
2679    
2680    CMDLINE=$0
2681    for xx in "$@" ; do nw=`echo $xx | wc -w`
2682        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2683                            else CMDLINE="$CMDLINE '$xx'" ; fi
2684    done
2685    
2686  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2687      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2688  fi  fi
2689  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2690  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 2371  echo "#    $MACHINE" >> $MAKEFILE Line 2692  echo "#    $MACHINE" >> $MAKEFILE
2692  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2693  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2694  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2695  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2696  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2697  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2698    
# Line 2382  EXE_SVD=$EXECUTABLE"_svd" Line 2703  EXE_SVD=$EXECUTABLE"_svd"
2703  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2704  #  #
2705  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2706  #  #
2707  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2708  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2709  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 2402  cat >>$MAKEFILE <<EOF Line 2723  cat >>$MAKEFILE <<EOF
2723  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2724    
2725  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2726  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2727  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2728  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2729  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
# Line 2428  else Line 2749  else
2749      echo "EMBEDDED_FILES = " >>$MAKEFILE      echo "EMBEDDED_FILES = " >>$MAKEFILE
2750  fi  fi
2751    
 #  Note: figure out some way to add Hyades JAM libraries here  
2752  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2753  # Unix ln (link)  # Unix ln (link)
2754  LN = ${LN}  LN = ${LN}
# Line 2455  INCLUDES = ${INCLUDES} Line 2775  INCLUDES = ${INCLUDES}
2775  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2776  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2777  # Optim./debug for FC  # Optim./debug for FC
2778  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2779  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2780  # Optim./debug for FC  # Optim./debug for FC
2781  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2782  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2783    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2784  # Flags for CC  # Flags for CC
2785  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2786  # Files that should not be optimized  # Files that should not be optimized
# Line 2467  NOOPTFILES = ${NOOPTFILES} Line 2788  NOOPTFILES = ${NOOPTFILES}
2788  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2789  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2790  LIBS = ${LIBS}  LIBS = ${LIBS}
2791  # Name of the Mekfile  # Name of the makefile
2792  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2793    
2794  EOF  EOF
2795    
2796  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2797  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2798  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2799  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2800  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2801    cat ad_flow_files.tmp   >> $MAKEFILE
2802    
2803    rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2804    
2805  echo >> $MAKEFILE  echo >> $MAKEFILE
2806  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  
2807  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE  # add definitions for preprocessed sources
2808  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  # and note that not all systems allow case sensitive extensions
2809    # hence the $FS and $FS90 here.
2810    # for fixed format f90 files we use ff90 or FF90 resp
2811    # but these are not expected to be the original source files
2812    
2813    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2814    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2815    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2816    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2817  echo >> $MAKEFILE  echo >> $MAKEFILE
2818  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2819  echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
 rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
 rm -f ad_flow_files.inc  
2820    
2821  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2822    
2823  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2824  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2825          @echo Creating \$@ ...          @echo Creating \$@ ...
2826          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2827    
2828  depend:  depend:
2829          @make links          @make -f \$(MAKEFILE) links
2830          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2831          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2832          -rm -f makedepend.out          -rm -f makedepend.out
2833    
# Line 2505  libmitgcmuv.a: \$(OBJFILES) Line 2837  libmitgcmuv.a: \$(OBJFILES)
2837          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
2838          ar d   libmitgcmuv.a main.o          ar d   libmitgcmuv.a main.o
2839    
2840  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  obj: \$(OBJFILES)
2841    
2842  small_f: \$(F77FILES) \$(F90FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2843    
2844    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2845    
2846  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2847          @printf 'running ... '          @printf 'running ... '
2848          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2849    
2850    # remove most of the files that "make" generates
2851  clean:  clean:
2852          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2853          -rm -rf *.o          -rm -rf *.o
2854          -rm -rf *.$FS          -rm -rf *.$FS *.flowdir
2855            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2856    
2857    # remove most of the files that "make" and "make depend" generate
2858  Clean:  Clean:
2859          @make clean          @make -f \$(MAKEFILE) clean
2860          @make cleanlinks          @make -f \$(MAKEFILE) cleanlinks
2861          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2862          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2863            -rm -f genmake_warnings genmake_errors make.log
2864    
2865    # remove also the executable, files that "genmake2" generates (except Makefile)
2866    #         and output from a run (plus log files from testreport)
2867  CLEAN:  CLEAN:
2868          @make Clean          @make -f \$(MAKEFILE) Clean
2869            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2870            -rm -f $LOGFILE genmake_state genmake_*optfile
2871            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2872          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2873          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2874          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2875          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime          -rm -f *.txt STD* *diagnostics.log datetime
2876            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2877          -rm -rf mnc_test_*          -rm -rf mnc_test_*
2878    
 #eh3 Makefile: makefile  
2879  makefile:  makefile:
2880          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
2881  cleanlinks:  cleanlinks:
2882          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2883    
2884  # Special targets (SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2885  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2886          @echo Creating \$@ ...          @echo Creating \$@ ...
2887          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2888  AD_CONFIG.h:  AD_CONFIG.h:
2889          @echo Creating \$@ ...          @echo Creating \$@ ...
2890          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
2891  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
2892          @echo Creating \$@ ...          @echo Creating \$@ ...
2893          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
# Line 2561  if test "x$EMBED_SRC" = xt ; then Line 2906  if test "x$EMBED_SRC" = xt ; then
2906    
2907  decode_files.o : EMBEDDED_FILES.h  decode_files.o : EMBEDDED_FILES.h
2908    
2909  ##  \$(F77FILES)  ##  \$(F77_PP_SRC_FILES)
2910  all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile  all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2911          @echo Creating \$@ ...          @echo Creating \$@ ...
2912          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2913          -rm -f all_fF.tar.gz          -rm -f all_fF.tar.gz
2914          -gzip all_fF.tar          -gzip all_fF.tar
2915    
# Line 2586  cat >>$MAKEFILE <<EOF Line 2931  cat >>$MAKEFILE <<EOF
2931          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2932  .$FS.o:  .$FS.o:
2933          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2934  .F90.o:    .F.o:
2935            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2936    .F90.$FS90:
2937            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2938    .FF90.f$FS90:
2939            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2940    .$FS90.o:
2941          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2942    .f$FS90.o:
2943            cp \$< \$(basename  \$<).f90
2944            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2945  .c.o:  .c.o:
2946          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2947    .flow.flowdir:
2948            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2949    
2950  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2951  .F.p:  .F.p:
# Line 2597  cat >>$MAKEFILE <<EOF Line 2953  cat >>$MAKEFILE <<EOF
2953  .p.$FS:  .p.$FS:
2954          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2955    
2956    EOF
2957    
2958  #=========================================  #=========================================
2959  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2960    #===  for TAMC/TAF  ======================
2961    
2962    if test "x$OPENAD" = x ; then
2963    
2964    cat >>$MAKEFILE <<EOF
2965    
2966  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2967  TAF            = ${TAF}  TAF            = ${TAF}
# Line 2622  done Line 2985  done
2985  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2986  echo >> $MAKEFILE  echo >> $MAKEFILE
2987  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2988  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2989  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2990      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2991      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2992  done  done
2993  echo >> $MAKEFILE  echo >> $MAKEFILE
2994  rm -f ad_files  rm -f adSrcFiles.tmp
2995    
2996  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2997    
# Line 2637  adall: \$(EXE_AD) Line 3000  adall: \$(EXE_AD)
3000  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
3001  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
3002    
3003  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
3004          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3005          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3006          -rm -f ad_config.template          -rm -f ad_config.template
3007          @make \$(F77FILES)          @make -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3008          @make \$(AD_FLOW_FILES)          @make -f \$(MAKEFILE) \$(FLOFILES)
3009          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS          cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3010    
3011  ad_taf_output.$FS: ad_input_code.$FS  ad_taf_output.$FS: ad_input_code.$FS
3012          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3013            ls -l ad_input_code_ad.$FS
3014          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3015    
3016  adtafonly:  adtafonly:
3017          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3018            ls -l ad_input_code_ad.$FS
3019          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3020    
3021  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
3022          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
3023    
3024  ad_tamc_output.$FS: ad_input_code.$FS  ad_tamc_output.$FS: ad_input_code.$FS
3025          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3026          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3027    
3028  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
3029          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3030    
3031  adonlyfwd:  adonlyfwd:
3032          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3033    
3034  adtrick:  adtrick:
3035          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3036    
3037    adobj: ad_taf_output.o \$(OBJFILES)
3038    
3039  # ... FTL ...  # ... FTL ...
3040  ftlall: ftl_taf  ftlall: \$(EXE_FTL)
3041  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
3042  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
3043    
3044  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
3045          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ftl_config.template
3046          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
3047          -rm -f ftl_config.template          -rm -f ftl_config.template
3048          @make \$(F77FILES)          @make -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3049          @make \$(AD_FLOW_FILES)          @make -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3050          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS          cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3051    
3052  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_taf_output.$FS: ftl_input_code.$FS
3053          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3054            ls -l ftl_input_code_ftl.$FS
3055          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3056    
3057  ftltafonly:  ftltafonly:
3058          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3059            ls -l ftl_input_code_ftl.$FS
3060          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3061    
3062  ftl_taf: ftl_taf_output.o \$(OBJFILES)  \${EXE_FTL}: ftl_taf_output.o \$(OBJFILES)
3063          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
3064    
3065  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
3066          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3067          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3068    
3069  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3070          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
3071    
3072  # ... SVD ...  # ... SVD ...
3073  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
# Line 2721  svd_touch: Line 3089  svd_touch:
3089          touch ad_taf_output.$FS ftl_taf_output.$FS          touch ad_taf_output.$FS ftl_taf_output.$FS
3090          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3091          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3092          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ftl_config.template
3093          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
3094          -rm -f ftl_config.template          -rm -f ftl_config.template
3095    
3096  #=========================================  EOF
3097    
3098    fi
3099    
3100    #===  for OpenAD  ========================
3101    
3102    if test "x$OPENAD" != x ; then
3103    
3104    # ============ begin OpenAD specific section ==============
3105    
3106    cat >>$MAKEFILE <<EOF
3107    
3108    # all the source files linked from the various locations:
3109    ALL_LINKED_FILES= \
3110    \$(F77_SRC_FILES) \
3111    \$(C_SRC_FILES) \
3112    \$(H_SRC_FILES) \
3113    \$(F90_SRC_FILES) \
3114    \$(SPECIAL_FILES)
3115    
3116    ifndef OPENADROOT
3117      \$(error "Error:  environment variable OPENADROOT not defined!")
3118    endif
3119    
3120    ifndef XAIFSCHEMAROOT
3121      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
3122    endif
3123    
3124    ifndef XAIFBOOSTERROOT
3125      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
3126    endif
3127    
3128    EOF
3129    
3130    echo "  Add the source list for common block to module conversion "
3131    echo >> $MAKEFILE
3132    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3133    for i in `cat ${OAD_CB2M_FILES}` ; do
3134      echo    " \\" >> $MAKEFILE
3135      printf " $i" >> $MAKEFILE
3136    done
3137    echo >> $MAKEFILE
3138    
3139    echo "  Add the source list for AD code generation"
3140    echo >> $MAKEFILE
3141    printf "AD_FILES = " >> $MAKEFILE
3142    for i in `cat ${OAD_CB2M_FILES}` ; do
3143      echo    " \\" >> $MAKEFILE
3144      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3145    done
3146    AD_FILES=`cat adSrcFiles.tmp`
3147    for i in $AD_FILES ; do
3148      basename=${i%%.f}
3149      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3150      if test -z "$toBeIgnored" ; then
3151        echo    " \\" >> $MAKEFILE
3152        printf " $i" >> $MAKEFILE
3153      fi
3154    done
3155    echo >> $MAKEFILE
3156    rm -f adSrcFiles.tmp
3157    
3158    cat >>$MAKEFILE <<EOF
3159    
3160    adAll: \$(EXE_AD)
3161    .PHONY: adAll
3162    
3163    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3164    
3165    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3166    
3167    .PHONY: adDepend
3168    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3169            \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3170            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3171            -rm -f makedepend.out
3172    
3173    OPENAD_SUPPORT_F90_SRC_FILES = \
3174    w2f__types.F90 \
3175    OAD_active.F90 \
3176    OAD_cp.F90 \
3177    OAD_rev.F90 \
3178    OAD_tape.F90
3179    
3180    OPENAD_SUPPORT_C_SRC_FILES = \
3181    iaddr.c \
3182    timeRatio.c
3183    
3184    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3185            cat \$^ > \$@
3186    
3187    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3188            cat \$^ > \$@
3189    
3190    f95_test.out: f95_test_mods.f90 f95_test.f90
3191            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3192            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3193    
3194    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3195    
3196    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3197    
3198    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3199    
3200    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3201            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3202    
3203    # create sources files modules from header files containing common blocks
3204    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3205            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3206    
3207    # create new header files with USE statements for the new modules made above
3208    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3209            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3210    
3211    # change the include directives of everybody to refer to  the new header files with the USE statements
3212    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3213            ../OAD_support/cb2mUseModules.bash $< ${MPI}
3214    
3215    # makefile debug rule
3216    small_f: \$(CB2M_F90_PP_SRC_FILES)
3217    .PHONY: small_f
3218    
3219    ad_output.txt: \$(EXE_AD)
3220            @printf 'linking data files ... '
3221            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3222            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3223            @printf 'running ... '
3224            @./\$(EXE_AD) > \$@
3225    
3226    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3227            cat \$^ > \$@
3228    
3229    # canonicalizer
3230    ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3231            \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3232    
3233    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3234    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3235            cat \$< | sed -f ../OAD_support/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3236    
3237    # F -> WHIRL
3238    ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3239            \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
3240    
3241    # WHIRL -> XAIF
3242    ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3243            \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3244    
3245    # XAIF -> XAIF'
3246    ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3247            \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3248    
3249    # XAIF' -> WHIRL'
3250    ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3251            \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3252    
3253    # WHIRL' -> F'
3254    ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3255            \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3256    
3257    # insert template directives
3258    ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3259            ../OAD_support/insertTemplateDir.bash \$< \$@
3260    
3261    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3262    # postprocess F'
3263    postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3264            \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ../OAD_support/ad_inline.f \$<
3265            # the target is a placeholder to trigger a single execution of the rule
3266            touch \$@
3267    # put this so make knows about the postprocessing output
3268    OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
3269    
3270    # link the XAIF schema files
3271    %.xsd:
3272            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3273    
3274    # link the support files:
3275    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3276            \$(LN) ../OAD_support/\$@ .
3277    
3278    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag \$(PPEXTRAS:.F=.f)
3279    
3280    # ============ end OpenAD specific section ==============
3281    
3282  EOF  EOF
3283    
3284    fi
3285    
3286    #=========================================
3287    
3288  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3289      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3290  fi  fi
# Line 2764  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3320  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3320  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3321    
3322  # Create special header files  # Create special header files
3323  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3324  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3325      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3326  else  else
# Line 2778  else Line 3334  else
3334      fi      fi
3335  fi  fi
3336  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3337      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3338  fi  fi
3339    
   
3340  #  Write the "state" for future records  #  Write the "state" for future records
3341  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3342      printf "" > genmake_state      printf "" > genmake_state
3343      for i in $gm_state ; do      for i in $gm_state ; do
3344          t1="t2=\$$i"          t1="t2=\$$i"
3345          eval $t1          eval $t1
3346          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3347      done      done
3348  fi  fi

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