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revision 1.99 by edhill, Mon Sep 27 15:49:48 2004 UTC revision 1.150 by edhill, Mon May 22 22:11:11 2006 UTC
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24  }  }
25    
26  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
27  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
29      cpp_options=$1      cpp_options=$1
30      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38  }  }
39    
40  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 39  test_for_string_in_file() { Line 47  test_for_string_in_file() {
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
49          grep -i "$strng" $file          grep -i "$strng" $file
50          return 1          exit 99
51      fi      fi
52      return 0      return 0
53  }  }
# Line 122  EOF Line 130  EOF
130        stop        stop
131        end        end
132  EOF  EOF
133      test -f Makefile  &&  mv -f Makefile Makefile.bak      test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
134      cat <<EOF >> Makefile      cat <<EOF >> $MAKEFILE
 %.$tfs : %.F  
135  .SUFFIXES:  .SUFFIXES:
136  genmake_hello.$tfs: genmake_hello.F  .SUFFIXES: .$tfs .F
137          $LN genmake_hello.F genmake_hello.$tfs  .F.$tfs:
138            $LN \$< \$@
139  EOF  EOF
140      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE "genmake_hello."$tfs > /dev/null 2>&1
141      RETVAL=$?      RETVAL=$?
# Line 148  EOF Line 156  EOF
156              return              return
157          fi          fi
158      fi      fi
159      rm -f genmake_hello.* Makefile      rm -f genmake_hello.* $MAKEFILE
160      test -f Makefile  &&  mv -f Makefile.bak Makefile      test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
161    
162      #  If we make it here, use the extensions      #  If we make it here, use the extensions
163      FS=$tfs      FS=$tfs
# Line 181  look_for_makedepend()  { Line 189  look_for_makedepend()  {
189      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
190          which makedepend > /dev/null 2>&1          which makedepend > /dev/null 2>&1
191          RV0=$?          RV0=$?
192            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
193            #  echo 'MAKEFILE="'$MAKEFILE'"'
194            cat <<EOF >> $MAKEFILE
195    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
196    #
197    #   Some "makedepend" implementations will die if they cannot
198    #   find a Makefile -- so this file is here to gives them an
199    #   empty one to find and parse.
200    EOF
201          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
202        program test        program test
203        write(*,*) 'test'        write(*,*) 'test'
# Line 189  look_for_makedepend()  { Line 206  look_for_makedepend()  {
206  EOF  EOF
207          makedepend genmake_tc.f > /dev/null 2>&1          makedepend genmake_tc.f > /dev/null 2>&1
208          RV1=$?          RV1=$?
209            test -f $MAKEFILE  &&  rm -f $MAKEFILE
210            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
211          if test "x${RV0}${RV1}" = x00 ; then          if test "x${RV0}${RV1}" = x00 ; then
212              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
213          else          else
# Line 237  build_cyrus_makedepend()  { Line 256  build_cyrus_makedepend()  {
256      fi      fi
257  }  }
258    
259    
260    build_embed_encode()
261    {
262        printf "  building the embed-encode utility...  "
263        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265                echo
266                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267                echo
268                EMBED_SRC=f
269                return 1
270            fi
271            clist="cc gcc c89 $CC"
272            for ic in $clist ; do
273                comm="$ic -o encode_files encode_files.c"
274                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275                RETVAL=$?
276                if test "x$RETVAL" = x0 ; then
277                    echo "OK"
278                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279                    return 0
280                fi
281            done
282            echo
283            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
284            echo "      so it has been disabled"
285            echo
286            EMBED_SRC=f
287            return 1
288        fi
289        echo "OK"
290        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291    }
292    
293    
294  # Guess possible config options for this host  # Guess possible config options for this host
295  find_possible_configs()  {  find_possible_configs()  {
296    
# Line 310  EOF Line 364  EOF
364    
365      #================================================================      #================================================================
366      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
367      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 gfortran"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 342  EOF Line 396  EOF
396      else      else
397          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
398          echo "   "$p_FC          echo "   "$p_FC
399          if test "x$FC" = x ; then      fi
400              FC=`echo $p_FC | $AWK '{print $1}'`  
401              echo "  Setting FORTRAN compiler to: "$FC      #  Use the first of the compilers found in the current PATH
402          fi      #  that has a correctly-named optfile
403        if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
404            for i in $p_FC ; do
405                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
406                if test -r $OPTFILE ; then
407                    echo "  Setting OPTFILE to: "$OPTFILE
408                    break
409                fi
410            done
411      fi      fi
412    
413      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
# Line 516  Usage: "$0" [OPTIONS] Line 578  Usage: "$0" [OPTIONS]
578            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
579            is being used.            is being used.
580    
581        -ignoretime | -ignore_time | --ignoretime | --ignore_time
582              Ignore all the "wall clock" routines entirely.  This will
583              not in any way hurt the model results -- it simply means
584              that the code that checks how long the model spends in
585              various routines will give junk values.
586    
587        -ts | --ts
588              Produce timing information per timestep
589        -papis | --papis
590              Produce summary MFlop/s (and IPC) with PAPI per timestep
591        -pcls | --pcls
592              Produce summary MFlop/s etc. with PCL per timestep
593        -foolad | --foolad
594              Fool the AD code generator
595        -papi | --papi
596              Performance analysis with PAPI
597        -pcl | --pcl
598              Performance analysis with PCL
599        -hpmt | --hpmt
600              Performance analysis with the HPM Toolkit
601    
602        -gsl | --gsl
603              Use GSL to control floating point rounding and precision
604    
605      -mpi | --mpi      -mpi | --mpi
606            Include MPI header files and link to MPI libraries            Include MPI header files and link to MPI libraries
607      -mpi=PATH | --mpi=PATH      -mpi=PATH | --mpi=PATH
# Line 523  Usage: "$0" [OPTIONS] Line 609  Usage: "$0" [OPTIONS]
609            set to PATH. i.e. Include files from \$PATH/include, link to libraries            set to PATH. i.e. Include files from \$PATH/include, link to libraries
610            from \$PATH/lib and use binaries from \$PATH/bin.            from \$PATH/lib and use binaries from \$PATH/bin.
611    
612        -es | --es | -embed-source | --embed-source
613              Embed a tarball containing the full source code
614              (including the Makefile, etc.) used to build the
615              executable [off by default]
616    
617      -bash NAME      -bash NAME
618            Explicitly specify the Bourne or BASH shell to use            Explicitly specify the Bourne or BASH shell to use
619    
# Line 581  WARNING: Please contact <MITgcm-support@ Line 672  WARNING: Please contact <MITgcm-support@
672  EOF  EOF
673          return 1          return 1
674      fi      fi
675      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
676        subroutine tcall( string )        subroutine tcall( string )
677        character*(*) string        character*(*) string
678        call tsub( string )        call tsub( string )
679        end        end
680  EOF  EOF
681      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
682      RETVAL=$?      RETVAL=$?
683      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
684          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 653  void FC_NAMEMANGLE(cloc) ( double *curti Line 744  void FC_NAMEMANGLE(cloc) ( double *curti
744   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
745  }  }
746  EOF  EOF
747      make genmake_tc_1.o >> genmake_tc.log 2>&1      make genmake_tc_1.o >> genmake_warnings 2>&1
748      RET_C=$?      RET_C=$?
749      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
750        program hello        program hello
751        Real*8 wtime        REAL*8 wtime
752        external cloc        external cloc
753        call cloc(wtime)        call cloc(wtime)
754        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
755        end program hello        end
756  EOF  EOF
757      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      $FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o >> genmake_warnings 2>&1
758      RET_F=$?      RET_F=$?
759      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
760      RETVAL=$?      RETVAL=$?
761      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
762          HAVE_CLOC=t          HAVE_CLOC=t
# Line 675  EOF Line 766  EOF
766  }  }
767    
768    
769    check_HAVE_SIGREG()  {
770        if test ! "x$HAVE_SIGREG" = x ; then
771            return
772        fi
773        get_fortran_c_namemangling
774        cat <<EOF > genmake_tc_1.c
775    $FC_NAMEMANGLE
776    #include <stdlib.h>
777    #include <stdio.h>
778    #include <signal.h>
779    #include <errno.h>
780    #include <ucontext.h>
781    
782    int * ip;
783    
784    static void killhandler(
785        unsigned int sn, siginfo_t  si, struct ucontext *sc )
786    {
787        *ip = *ip + 1;
788        return;
789    }
790    
791    void FC_NAMEMANGLE(sigreg) (int * aip)
792    {
793        struct sigaction s;
794        ip = aip;
795        s.sa_flags = SA_SIGINFO;
796        s.sa_sigaction = (void *)killhandler;
797        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
798            printf("Sigaction returned error = %d\n", errno);
799            exit(0);
800        }
801        return;
802    }
803    EOF
804        make genmake_tc_1.o >> genmake_warnings 2>&1
805        RET_C=$?
806        cat <<EOF > genmake_tc_2.$FS
807          program hello
808          integer anint
809          common /iv/ anint
810          external sigreg
811          call sigreg(anint)
812          end
813    EOF
814        echo >> genmake_warnings
815        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
816        cat genmake_tc_2.$FS >> genmake_warnings
817        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
818        echo $COMM >> genmake_warnings
819        $COMM >> genmake_warnings 2>&1
820        RETVAL=$?
821        if test "x$RETVAL" = x0 ; then
822            HAVE_SIGREG=t
823            DEFINES="$DEFINES -DHAVE_SIGREG"
824        fi
825        rm -f genmake_tc*
826    }
827    
828    
829    check_HAVE_SETRLSTK()  {
830        get_fortran_c_namemangling
831        cat <<EOF > genmake_tc_1.c
832    $FC_NAMEMANGLE
833    #include <sys/time.h>
834    #include <sys/resource.h>
835    #include <unistd.h>
836    void FC_NAMEMANGLE(setrlstk) ()
837    {
838        struct rlimit rls;
839        rls.rlim_cur = RLIM_INFINITY;
840        rls.rlim_max = RLIM_INFINITY;
841        setrlimit(RLIMIT_STACK, &rls);
842        return;
843    }
844    EOF
845        make genmake_tc_1.o >> genmake_warnings 2>&1
846        RET_C=$?
847        cat <<EOF > genmake_tc_2.$FS
848          program hello
849          external setrlstk
850          call setrlstk()
851          end
852    EOF
853        echo >> genmake_warnings
854        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
855        cat genmake_tc_2.$FS >> genmake_warnings
856        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
857        echo $COMM >> genmake_warnings
858        $COMM >> genmake_warnings 2>&1
859        RETVAL=$?
860        if test "x$RETVAL" = x0 ; then
861            HAVE_SETRLSTK=t
862            DEFINES="$DEFINES -DHAVE_SETRLSTK"
863        fi
864        rm -f genmake_tc*
865    }
866    
867    
868    check_HAVE_STAT()  {
869        get_fortran_c_namemangling
870        cat <<EOF > genmake_tc_1.c
871    $FC_NAMEMANGLE
872    #include <stdio.h>
873    #include <stdlib.h>
874    #include <unistd.h>
875    #include <sys/stat.h>
876    #include <sys/types.h>
877    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
878    {
879        char name[512];
880        struct stat astat;
881    
882        name[0] = 'a'; name[1] = '\0';
883        if (! stat(name, &astat))
884            *nbyte = (int)(astat.st_size);
885        else
886            *nbyte = -1;
887    }
888    EOF
889        make genmake_tc_1.o >> genmake_tc.log 2>&1
890        RET_C=$?
891        cat <<EOF > genmake_tc_2.$FS
892          program hello
893          integer nbyte
894          call tfsize(nbyte)
895          print *," HELLO WORLD", nbyte
896          end
897    EOF
898        echo >> genmake_warnings
899        echo "running: check_HAVE_STAT()" >> genmake_warnings
900        cat genmake_tc_2.$FS >> genmake_warnings
901        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
902        echo $COMM >> genmake_warnings
903        $COMM >> genmake_tc.log 2>&1
904        RETVAL=$?
905        if test "x$RETVAL" = x0 ; then
906            HAVE_STAT=t
907            DEFINES="$DEFINES -DHAVE_STAT"
908        fi
909        rm -f genmake_tc*
910    }
911    
912    
913  check_netcdf_libs()  {  check_netcdf_libs()  {
914      echo "" > genmake_tnc.log      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
915      cat <<EOF > genmake_tnc.for          return
916        fi
917        echo >> genmake_warnings
918        echo "running: check_netcdf_libs()" >> genmake_warnings
919        cat <<EOF > genmake_tnc.F
920        program fgennc        program fgennc
921  #include "netcdf.inc"  #include "netcdf.inc"
922    EOF
923        if test ! "x$MPI" = x ; then
924            echo '#include "mpif.h"' >> genmake_tnc.F
925        fi
926        cat <<EOF >> genmake_tnc.F
927        integer iret, ncid, xid        integer iret, ncid, xid
928        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
929        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
# Line 689  check_netcdf_libs()  { Line 933  check_netcdf_libs()  {
933        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
934        end        end
935  EOF  EOF
936      #echo "$CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f"      echo "===  genmake_tnc.F  ===" > genmake_tnc.log
937      #echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.f"      cat genmake_tnc.F >> genmake_tnc.log
938      #echo "$LINK -o genmake_tnc.o $LIBS"      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
939      $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \      RET_CPP=f
940          &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.f >> genmake_tnc.log 2>&1  \      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
941        echo "$COMM" >> genmake_tnc.log
942        $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
943        if test "x$RET_CPP" = xf ; then
944            echo "  WARNING: CPP failed to pre-process the netcdf test." \
945                >> genmake_tnc.log
946            echo "    Please check that \$INCLUDES is properly set." \
947                >> genmake_tnc.log
948        fi
949        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
950        echo "  &&  $LINK -o genmake_tnc.o $LIBS" >> genmake_tnc.log
951        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
952          &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1          &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
953      RET_COMPILE=$?      RET_COMPILE=$?
954        cat genmake_tnc.log >> genmake_warnings
955    
956      #EH3  Remove test program execution for machines that either disallow      #EH3  Remove test program execution for machines that either disallow
957      #EH3  execution or cannot support it (eg. cross-compilers)      #EH3  execution or cannot support it (eg. cross-compilers)
# Line 708  EOF Line 964  EOF
964          HAVE_NETCDF=t          HAVE_NETCDF=t
965      else      else
966          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
967          $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \          echo "try again with added '-lnetcdf'" > genmake_tnc.log
968              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.f >> genmake_tnc.log 2>&1  \          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
969            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
970            echo " &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
971            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
972                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
973              &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1              &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
974          RET_COMPILE=$?          RET_COMPILE=$?
975            cat genmake_tnc.log >> genmake_warnings
976          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
977              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
978              HAVE_NETCDF=t              HAVE_NETCDF=t
         else  
             cat genmake_tnc.log >> genmake_warnings  
979          fi          fi
980      fi      fi
981      rm -f genmake_tnc*      rm -f genmake_tnc*
# Line 735  PLATFORM= Line 994  PLATFORM=
994  LN=  LN=
995  S64=  S64=
996  KPP=  KPP=
997  FC=  #FC=
998  #CC=gcc  #CC=gcc
999  CPP=  #CPP=
1000  LINK=  LINK=
1001  DEFINES=  DEFINES=
1002  PACKAGES=  PACKAGES=
1003  ENABLE=  ENABLE=
1004  DISABLE=  DISABLE=
1005  MAKEFILE=  # MAKEFILE=
1006  #MAKEDEPEND=  # MAKEDEPEND=
1007  PDEPEND=  PDEPEND=
1008  DUMPSTATE=t  DUMPSTATE=t
1009  PDEFAULT=  PDEFAULT=
1010  OPTFILE=  OPTFILE=
1011  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1012  FFLAGS=  FFLAGS=
1013  FOPTIM=  FOPTIM=
1014  CFLAGS=  CFLAGS=
# Line 762  NOOPTFILES= Line 1021  NOOPTFILES=
1021  NOOPTFLAGS=  NOOPTFLAGS=
1022  MPI=  MPI=
1023  MPIPATH=  MPIPATH=
1024    TS=
1025    PAPIS=
1026    PCLS=
1027    FOOLAD=
1028    PAPI=
1029    PCL=
1030    HPMT=
1031    GSL=
1032    HAVE_TEST_L=
1033    
1034  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1035  HAVE_SYSTEM=  HAVE_SYSTEM=
1036  HAVE_FDATE=  HAVE_FDATE=
1037  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1038  HAVE_CLOC=  HAVE_CLOC=
1039    HAVE_SETRLSTK=
1040    HAVE_STAT=
1041  HAVE_NETCDF=  HAVE_NETCDF=
1042  HAVE_ETIME=  HAVE_ETIME=
1043    IGNORE_TIME=
1044    
1045  MODS=  MODS=
1046  TOOLSDIR=  TOOLSDIR=
# Line 780  STANDARDDIRS="USE_THE_DEFAULT" Line 1051  STANDARDDIRS="USE_THE_DEFAULT"
1051  G2ARGS=  G2ARGS=
1052  BASH=  BASH=
1053  PWD=`pwd`  PWD=`pwd`
1054  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1055  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1056    EMBED_SRC=
1057  THISHOST=`hostname`  THISHOST=`hostname`
1058  THISCWD=`pwd`  THISCWD=`pwd`
1059  THISDATE=`date`  THISDATE=`date`
# Line 815  TAMC_EXTRA= Line 1087  TAMC_EXTRA=
1087    
1088  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1089  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1090  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL MPI JAM DUMPSTATE STANDARDDIRS"
1091    
1092  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1093  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
# Line 861  else Line 1133  else
1133      echo "none found"      echo "none found"
1134  fi  fi
1135    
1136  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1137  #OPTIONS=  #OPTIONS=
1138  #n=0  #n=0
1139  #for i ; do  #for i ; do
# Line 873  fi Line 1145  fi
1145  #done  #done
1146  #parse_options  #parse_options
1147  ac_prev=  ac_prev=
1148  for ac_option in $@ ; do  for ac_option in "$@" ; do
1149    
1150      G2ARGS="$G2ARGS \"$ac_option\""      G2ARGS="$G2ARGS \"$ac_option\""
1151    
# Line 995  for ac_option in $@ ; do Line 1267  for ac_option in $@ ; do
1267          -noieee | --noieee)          -noieee | --noieee)
1268              IEEE= ;;              IEEE= ;;
1269    
1270            -ts | --ts)
1271                TS=true ;;
1272            -papis | --papis)
1273                PAPIS=true ;;
1274            -pcls | --pcls)
1275                PCLS=true ;;
1276            -foolad | --foolad)
1277                FOOLAD=true ;;
1278            -papi | --papi)
1279                PAPI=true ;;
1280            -pcl | --pcl)
1281                PCL=true ;;
1282            -hpmt | --hpmt)
1283                HPMT=true ;;
1284    
1285            -gsl | --gsl)
1286                GSL=true ;;
1287    
1288          -mpi | --mpi)          -mpi | --mpi)
1289              MPI=true ;;              MPI=true ;;
1290          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
# Line 1018  for ac_option in $@ ; do Line 1308  for ac_option in $@ ; do
1308              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1309          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1310              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1311            
1312            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1313                IGNORE_TIME="-DIGNORE_TIME" ;;
1314    
1315            -es | --es | -embed-source | --embed-source)
1316                EMBED_SRC=t ;;
1317    
1318          -*)          -*)
1319              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 1033  for ac_option in $@ ; do Line 1329  for ac_option in $@ ; do
1329            
1330  done  done
1331    
1332    
1333  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1334      echo      echo
1335      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
# Line 1047  fi Line 1344  fi
1344    
1345  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
1346  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1347      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1348      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then
1349          ROOTDIR=".."          ROOTDIR=".."
1350      else      else
# Line 1074  fi Line 1371  fi
1371    
1372  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1373  if test -f "${ROOTDIR}/doc/tag-index" ; then  if test -f "${ROOTDIR}/doc/tag-index" ; then
1374      THISVER=`grep checkpoint ${ROOTDIR}/doc/tag-index | head -1`      THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`
1375    fi
1376    
1377    if test "x$MAKEFILE" = x ; then
1378        MAKEFILE="Makefile"
1379  fi  fi
1380    
1381  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
# Line 1106  if test "x$OPTFILE" != xNONE ; then Line 1407  if test "x$OPTFILE" != xNONE ; then
1407      fi      fi
1408  fi  fi
1409    
 #  Check for broken systems that cannot correctly distinguish *.F and *.f files  
 # check_for_broken_Ff  
   
1410  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:  "
1411  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1412      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
# Line 1136  if test "x${AD_OPTFILE}" != xNONE ; then Line 1434  if test "x${AD_OPTFILE}" != xNONE ; then
1434      fi      fi
1435  fi  fi
1436    
1437    #====================================================================
1438    #  Set default values if not set by the optfile
1439    #
1440  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1441  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1442  if test ! "x$BASH" = x ; then  if test ! "x$BASH" = x ; then
# Line 1212  Error: The command "ln -s" failed -- ple Line 1513  Error: The command "ln -s" failed -- ple
1513  EOF  EOF
1514      exit 1      exit 1
1515  fi  fi
1516    test -L genmake_tlink > /dev/null 2>&1
1517    RETVAL=$?
1518    if test "x$RETVAL" = x0 ; then
1519        HAVE_TEST_L=t
1520    fi
1521  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1522    
1523  #  Check for broken *.F/*.f handling and fix if possible  #  Check for broken *.F/*.f handling and fix if possible
# Line 1222  if test ! "x$MPI" = x ; then Line 1528  if test ! "x$MPI" = x ; then
1528        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1529  fi  fi
1530    
1531    if test ! "x$TS" = x ; then
1532          echo "  Turning on timing per timestep"
1533          if test ! "x$FOOLAD" = x ; then
1534                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1535          else
1536                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1537          fi
1538    fi
1539    if test ! "x$PAPIS" = x ; then
1540          echo "  Turning on PAPI flop summary per timestep"
1541          echo "  Please make sure PAPIINC, PAPILIB are defined"
1542          if test ! "x$FOOLAD" = x ; then
1543                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1544          else
1545                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1546          fi
1547          INCLUDES="$INCLUDES $PAPIINC"
1548          LIBS="$LIBS $PAPILIB"
1549    fi
1550    if test ! "x$PCLS" = x ; then
1551          echo "  Turning on PCL counter summary per timestep"
1552          echo "  Please make sure PCLINC, PCLLIB are defined"
1553          if test ! "x$FOOLAD" = x ; then
1554                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1555          else
1556                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1557          fi
1558          INCLUDES="$INCLUDES $PCLINC"
1559          LIBS="$LIBS $PCLLIB"
1560    fi
1561    if test ! "x$PAPI" = x ; then
1562          if test ! "x$PAPIS" = x ; then
1563              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1564              echo "  Sticking with PAPI flop summary per timestep!"
1565          else
1566              echo "  Turning on performance analysis with PAPI"
1567              echo "  Please make sure PAPIINC, PAPILIB are defined"
1568              DEFINES="$DEFINES -DUSE_PAPI"
1569              INCLUDES="$INCLUDES $PAPIINC"
1570              LIBS="$LIBS $PAPILIB"
1571          fi
1572    fi
1573    if test ! "x$PCL" = x ; then
1574          if test ! "x$PCLS" = x ; then
1575              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1576              echo "  Sticking with PCL flop summary per timestep!"
1577          else
1578              echo "  Turning on performance analysis with PCL"
1579              echo "  Please make sure PCLINC, PCLLIB are defined"
1580              DEFINES="$DEFINES -DUSE_PCL"
1581              INCLUDES="$INCLUDES $PCLINC"
1582              LIBS="$LIBS $PCLLIB"
1583          fi
1584    fi
1585    if test ! "x$HPMT" = x ; then
1586          if test ! "x$PAPI" = x ; then
1587              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1588              echo "  Sticking with PAPI!"
1589          else if test ! "x$PCL" = x ; then
1590              echo "  PCL and the HPM Toolkit cannot co-exist!"
1591              echo "  Sticking with PCL!"
1592          else
1593              echo "  Turning on performance analysis with the HPM Toolkit"
1594              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1595              DEFINES="$DEFINES -DUSE_LIBHPM"
1596              INCLUDES="$INCLUDES $HPMTINC"
1597              LIBS="$LIBS $HPMTLIB"
1598          fi
1599          fi
1600    fi
1601    if test ! "x$GSL" = x ; then
1602          echo "  Turning on use of GSL to control floating point calculations"
1603          echo "  Please make sure GSLINC, GSLLIB are defined"
1604          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1605          INCLUDES="$INCLUDES $GSLINC"
1606          LIBS="$LIBS $GSLLIB"
1607    fi
1608    
1609  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1610  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1611  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1612        program hello        program hello
1613        call system('echo hi')        call system('echo hi')
1614        end        end
1615  EOF  EOF
1616  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1617  RETVAL=$?  RETVAL=$?
1618  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1619      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 1242  fi Line 1626  fi
1626  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1627    
1628  printf "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1629  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1630        program hello        program hello
1631        CHARACTER(128) string        CHARACTER*(128) string
1632        string = ' '        string = ' '
1633        call fdate( string )        call fdate( string )
1634        print *, string        print *, string
1635        end        end
1636  EOF  EOF
1637  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1638  RETVAL=$?  RETVAL=$?
1639  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1640      HAVE_FDATE=t      HAVE_FDATE=t
# Line 1263  fi Line 1647  fi
1647  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1648    
1649  printf "  Do we have the etime() command using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1650  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1651        program hello        program hello
1652        REAL*4 ACTUAL, TARRAY(2)        REAL*4 ACTUAL, TARRAY(2)
1653        EXTERNAL ETIME        EXTERNAL ETIME
# Line 1272  cat > genmake_tcomp.f <<EOF Line 1656  cat > genmake_tcomp.f <<EOF
1656        print *, tarray        print *, tarray
1657        end        end
1658  EOF  EOF
1659  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1660  RETVAL=$?  RETVAL=$?
1661  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1662      HAVE_ETIME=t      HAVE_ETIME=t
# Line 1290  if test "x$HAVE_CLOC" != x ; then Line 1674  if test "x$HAVE_CLOC" != x ; then
1674      echo "yes"      echo "yes"
1675  else  else
1676      echo "no"      echo "no"
1677        if test "x$EMBED_SRC" = xt ; then
1678            echo "    WARNING: you requested file embedding but it has"
1679            echo "      been disabled since C code cannot be called"
1680            EMBED_SRC=
1681        fi
1682    fi
1683    rm -f genmake_t*
1684    
1685    printf "  Can we unlimit the stack size using $FC...  "
1686    check_HAVE_SETRLSTK
1687    if test "x$HAVE_SETRLSTK" != x ; then
1688        echo "yes"
1689    else
1690        echo "no"
1691    fi
1692    rm -f genmake_t*
1693    
1694    printf "  Can we register a signal handler using $FC...  "
1695    check_HAVE_SIGREG
1696    if test "x$HAVE_SIGREG" = xt ; then
1697        echo "yes"
1698    else
1699        echo "no"
1700    fi
1701    rm -f genmake_t*
1702    
1703    printf "  Can we use stat() through C calls...  "
1704    check_HAVE_STAT
1705    if test "x$HAVE_STAT" != x ; then
1706        echo "yes"
1707    else
1708        echo "no"
1709  fi  fi
1710  rm -f genmake_t*  rm -f genmake_t*
1711    
# Line 1300  if test "x$HAVE_NETCDF" != x ; then Line 1716  if test "x$HAVE_NETCDF" != x ; then
1716  else  else
1717      echo "no"      echo "no"
1718  fi  fi
1719    DEFINES="$DEFINES $IGNORE_TIME"
1720    
1721    if test "x$EMBED_SRC" = xt ; then
1722        build_embed_encode
1723    fi
1724    if test "x$EMBED_SRC" = xt ; then
1725        ENABLE="$ENABLE embed_files"
1726    fi
1727    
1728    
1729  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
# Line 1317  for d in $MODS ; do Line 1741  for d in $MODS ; do
1741  done  done
1742  echo  echo
1743    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1744  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1745      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1746  fi  fi
1747    
1748  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1749      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1750      if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then      if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1751          EXEDIR=../exe          EXEDIR=../exe
1752      else      else
# Line 1345  if test ! -d ${TOOLSDIR} ; then Line 1766  if test ! -d ${TOOLSDIR} ; then
1766      exit 1      exit 1
1767  fi  fi
1768  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1769      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1770        RETVAL=$?
1771        if test "x${RETVAL}" = x0 ; then
1772            S64='$(TOOLSDIR)/set64bitConst.sh'
1773        else
1774            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1775            RETVAL=$?
1776            if test "x${RETVAL}" = x0 ; then
1777                S64='$(TOOLSDIR)/set64bitConst.csh'
1778            else
1779                cat <<EOF
1780    
1781    ERROR: neither of the two default scripts:
1782    
1783        ${TOOLSDIR}/set64bitConst.sh
1784        ${TOOLSDIR}/set64bitConst.csh
1785    
1786      are working so please check paths or specify (with \$S64) a
1787      working version of this script.
1788    
1789    EOF
1790                exit 1
1791            fi
1792        fi
1793  fi  fi
1794  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1795    
# Line 1490  done Line 1934  done
1934  rm -f ./.tmp_pack  rm -f ./.tmp_pack
1935  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1936    
1937    #  Check availability of NetCDF and then either build the MNC template
1938    #  files or delete mnc from the list of available packages.
1939    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1940    RETVAL=$?
1941    if test "x$RETVAL" = x0 ; then
1942        if test "x$HAVE_NETCDF" != xt ; then
1943            cat <<EOF
1944    
1945    *********************************************************************
1946    WARNING: the "mnc" package was enabled but tests failed to compile
1947      NetCDF applications.  Please check that:
1948    
1949      1) NetCDF is correctly installed for this compiler and
1950      2) the LIBS variable (within the "optfile") specifies the correct
1951           NetCDF library to link against.
1952    
1953      Due to this failure, the "mnc" package is now DISABLED.
1954    *********************************************************************
1955    
1956    EOF
1957            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
1958            DISABLE="$DISABLE mnc"
1959        else
1960            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
1961            RETVAL=$?
1962            if test "x${RETVAL}" = x0 ; then
1963                rm -f make_mnc.errors
1964            else
1965                echo "Error: problem encountered while building source files in pkg/mnc:"
1966                cat make_mnc.errors 1>&2
1967                exit 1
1968            fi
1969        fi
1970    fi
1971    
1972  echo "  applying package dependency rules"  echo "  applying package dependency rules"
1973  ck=  ck=
1974  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
# Line 1574  for i in $PACKAGES ; do Line 2053  for i in $PACKAGES ; do
2053      fi      fi
2054  done  done
2055    
 #  Build MNC templates and check for ability to build and use NetCDF  
 echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  
 RETVAL=$?  
 if test "x$RETVAL" = x0 ; then  
     ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         rm -f make_mnc.errors  
     else  
         echo "Error: problem encountered while building source files in pkg/mnc:"  
         cat make_mnc.errors 1>&2  
         exit 1  
     fi  
     if test "x$HAVE_NETCDF" != xt ; then  
         cat <<EOF  
   
 *********************************************************************  
 WARNING: the "mnc" package was enabled but tests failed to compile  
   NetCDF applications.  Please check that:  
   
   1) NetCDF is correctly installed for this compiler and  
   2) the LIBS variable (within the "optfile") specifies the correct  
        NetCDF library to link against.  
   
   Due to this failure, the "mnc" package is now DISABLED.  
 *********************************************************************  
   
 EOF  
         temp=`echo $PACKAGES | sed -e 's/mnc//g'`  
         PACKAGES=$temp  
     fi  
 fi  
   
2056  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2057  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2058  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
# Line 1626  for n in $names ; do Line 2072  for n in $names ; do
2072              fi              fi
2073          done          done
2074          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2075              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2076              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2077          fi          fi
2078      fi      fi
2079  done  done
2080  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2081  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2082      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2083      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2084  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2085    
# Line 1717  for i in $SOURCEDIRS ; do Line 2163  for i in $SOURCEDIRS ; do
2163          cat $i/$j >> ad_files          cat $i/$j >> ad_files
2164      done      done
2165  done  done
2166    if test ! "x"$FS = "x.f" ; then
2167        cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f
2168        mv -f ad_files_f ad_files
2169    fi
2170    
2171  echo  echo
2172  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
# Line 1728  for i in $INCLUDEDIRS ; do Line 2177  for i in $INCLUDEDIRS ; do
2177      fi      fi
2178  done  done
2179    
2180    if test ! "x$DIVA" = x ; then
2181        echo "  Creating the pseudo-MPI include directory"
2182        INCLUDES="-I./mpi_headers $INCLUDES"
2183        rm -rf ./mpi_headers
2184        mkdir -p ./mpi_headers
2185    
2186        if test "x$MPIINCLUDEDIR" = x ; then
2187            if test "x$MPIHOME" = x ; then
2188                MPIHOME='/usr'
2189            fi
2190            MPIINCLUDEDIR='$MPIHOME/include'
2191        fi
2192        
2193        if test -r $MPIINCLUDEDIR/mpif.h ; then
2194            for i in $MPI_HEADER_FILES; do
2195                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2196            done
2197    
2198            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2199        else
2200            echo " We cannot create a copy of mpif.h!"
2201            exit -1
2202        fi
2203    fi
2204    
2205  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2206  rm -rf .links.tmp  rm -rf .links.tmp
2207  mkdir .links.tmp  mkdir .links.tmp
2208    touch .links.tmp/foo
2209    if test ! -r ".links.tmp/foo" ; then
2210        echo
2211        echo "ERROR : something is wrong with your directory permissions or"
2212        echo "   your user file-creation mask (\"umask\") since creating a"
2213        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2214        echo "   not working.  Please try setting your umask to something"
2215        echo "   sane such as:"
2216        echo
2217        echo "      umask 0002"
2218        echo
2219        echo "   and please verify that you have the proper permissions for"
2220        echo "   creating sub-directories and then reading files created"
2221        echo "   within them."
2222        echo
2223        exit 1
2224    fi
2225    rm -f .links.tmp/foo
2226  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2227  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2228  printf 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
# Line 1746  for d in $alldirs ; do Line 2238  for d in $alldirs ; do
2238      for sf in $sfiles ; do      for sf in $sfiles ; do
2239          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2240              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2241                    ignore_f=f
2242                  case $d/$sf in                  case $d/$sf in
2243                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2244                            ignore_f=t
2245                          ;;                          ;;
2246                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2247                            ignore_f=t
2248                          ;;                          ;;
2249                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2250                            ignore_f=t
2251                          ;;                          ;;
2252                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2253                            ignore_f=t
2254                            ;;
2255                      ./EMBEDDED_FILES.h)
2256                            ignore_f=t
2257                          ;;                          ;;
2258                    *)                    *)
2259                          touch .links.tmp/$sf                          #  For the local directory *ONLY*,
2260                          deplist="$deplist $sf"                          #  ignore all soft-links
2261                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2262                                ignore_f=t
2263                            else
2264                                touch .links.tmp/$sf
2265                                deplist="$deplist $sf"
2266                            fi
2267                          ;;                          ;;
2268                  esac                  esac
2269                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  if test "x$ignore_f" = xf ; then
2270                  case $extn in                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2271                      F)                      case $extn in
2272                          echo    " \\"  >> srclist.inc                          F)
2273                          printf " $sf" >> srclist.inc                              echo    " \\"  >> srclist.inc
2274                          ;;                              printf " $sf" >> srclist.inc
2275                      F90)                              ;;
2276                          echo    " \\"  >> f90srclist.inc                          F90)
2277                          printf " $sf" >> f90srclist.inc                              echo    " \\"  >> f90srclist.inc
2278                          ;;                              printf " $sf" >> f90srclist.inc
2279                      c)                              ;;
2280                          echo    " \\"  >> csrclist.inc                          c)
2281                          printf " $sf" >> csrclist.inc                              echo    " \\"  >> csrclist.inc
2282                          ;;                              printf " $sf" >> csrclist.inc
2283                      h)                              ;;
2284                          echo    " \\"  >> hlist.inc                          h)
2285                          printf " $sf" >> hlist.inc                              echo    " \\"  >> hlist.inc
2286                          ;;                              printf " $sf" >> hlist.inc
2287                      flow)                              ;;
2288                          echo    " \\"  >> ad_flow_files.inc                          flow)
2289                          printf " $sf" >> ad_flow_files.inc                              echo    " \\"  >> ad_flow_files.inc
2290                          ;;                              printf " $sf" >> ad_flow_files.inc
2291                  esac                              ;;
2292                        esac
2293                    fi
2294              fi              fi
2295          fi          fi
2296      done      done
# Line 1858  DISABLED_PACKAGES = ${DISABLED_PACKAGES} Line 2366  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2366    
2367  # These files are created by Makefile  # These files are created by Makefile
2368  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2369  EOF  EOF
2370    
2371  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2372        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2373    else
2374        echo "EMBEDDED_FILES = " >>$MAKEFILE
2375    fi
2376    
2377    #  Note: figure out some way to add Hyades JAM libraries here
2378  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2379  # Unix ln (link)  # Unix ln (link)
2380  LN = ${LN}  LN = ${LN}
# Line 1900  CFLAGS = ${CFLAGS} Line 2412  CFLAGS = ${CFLAGS}
2412  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2413  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2414  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2415  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2416  # Name of the Mekfile  # Name of the Mekfile
2417  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2418    
# Line 1913  cat hlist.inc         >> $MAKEFILE Line 2425  cat hlist.inc         >> $MAKEFILE
2425  cat ad_flow_files.inc >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
2426  echo >> $MAKEFILE  echo >> $MAKEFILE
2427  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
2428  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE
2429  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
2430  echo >> $MAKEFILE  echo >> $MAKEFILE
2431  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
# Line 1924  rm -f ad_flow_files.inc Line 2436  rm -f ad_flow_files.inc
2436  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2437    
2438  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2439  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2440          @echo Creating \$@ ...          @echo Creating \$@ ...
2441          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2442  depend:  depend:
# Line 1933  depend: Line 2445  depend:
2445          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2446          -rm -f makedepend.out          -rm -f makedepend.out
2447    
2448    lib: libmitgcmuv.a
2449    
2450    libmitgcmuv.a: \$(OBJFILES)
2451            ar rcv libmitgcmuv.a \$(OBJFILES)
2452    
2453  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
2454    
2455  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
# Line 1953  CLEAN: Line 2470  CLEAN:
2470          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2471          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2472          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2473          -rm -f \$(EXECUTABLE) output.txt STD*          -rm -f \$(EXECUTABLE) *.txt STD* *diagnostics.log datetime
2474            -rm -rf mnc_test_*
2475    
2476  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2477  makefile:  makefile:
# Line 1981  test ! "x$THISUSER" = x && echo "      -echo Line 2499  test ! "x$THISUSER" = x && echo "      -echo
2499  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2500  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2501    
2502    if test "x$EMBED_SRC" = xt ; then
2503        cat >>$MAKEFILE <<EOF
2504    
2505    decode_files.o : EMBEDDED_FILES.h
2506    
2507    ##  \$(F77FILES)
2508    all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2509            @echo Creating \$@ ...
2510            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2511            -rm -f all_fF.tar.gz
2512            -gzip all_fF.tar
2513    
2514    EMBEDDED_FILES.h : all_fF.tar.gz
2515            @echo Creating \$@ ...
2516            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2517    
2518    EOF
2519    fi
2520    
2521  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2522    
2523  # The normal chain of rules is (  .F - .$FS - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )
2524    
2525  %.o : %.F  ## This nullifies any default implicit rules concerning these two file types:
2526    ## %.o : %.F
2527    
2528  .F.$FS:  .F.$FS:
2529          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
# Line 1996  cat >>$MAKEFILE <<EOF Line 2534  cat >>$MAKEFILE <<EOF
2534  .$FS90.o:  .$FS90.o:
2535          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2536  .c.o:  .c.o:
2537          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2538    
2539  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2540  .F.p:  .F.p:
# Line 2041  cat >>$MAKEFILE <<EOF Line 2579  cat >>$MAKEFILE <<EOF
2579    
2580  # ... AD ...  # ... AD ...
2581  adall: ad_taf  adall: ad_taf
2582  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
2583  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2584    
2585  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2586          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2587          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2588          -rm -f ad_config.template          -rm -f ad_config.template
2589          @make \$(F77FILES)          @make \$(F77FILES)
2590          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2591          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS
2592    
2593  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
2594          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2595          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2596    
2597  adtafonly:  adtafonly:
2598          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2599          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2600    
2601  ad_taf: ad_taf_output.o \$(OBJFILES)  ad_taf: ad_taf_output.o \$(OBJFILES)
2602          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2603    
2604  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.$FS: ad_input_code.$FS
2605          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2606          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2607    
2608  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2609          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2610    
2611    adonlyfwd:
2612            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2613    
2614    adtrick:
2615            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2616    
2617  # ... FTL ...  # ... FTL ...
2618  ftlall: ftl_taf  ftlall: ftl_taf
2619  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
2620  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
2621    
2622  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2623          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2624          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2625          -rm -f ftl_config.template          -rm -f ftl_config.template
2626          @make \$(F77FILES)          @make \$(F77FILES)
2627          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2628          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2629    
2630  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
2631          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2632          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2633    
2634  ftltafonly:  ftltafonly:
2635          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2636          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2637    
2638  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2639          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2640    
2641  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.$FS: ftl_input_code.$FS
2642          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2643          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2644    
2645  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2646          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2647    
2648    
2649  # ... SVD ...  # ... SVD ...
2650  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2651  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2652            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2653    svdall: svd_touch svd_taf
2654    
2655  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
2656          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2657    
2658            @echo "--->>> Only COMPILE svd code! <<<---"
2659            @echo "--->>> Assumes you previously <<<---"
2660            @echo "--->>> did make svdtaf        <<<---"
2661    
2662    svd_touch:
2663            @echo "--->>> Only COMPILE svd code! <<<---"
2664            @echo "--->>> Assumes you previously <<<---"
2665            @echo "--->>> did make svdtaf        <<<---"
2666            touch ad_taf_output.$FS ftl_taf_output.$FS
2667            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2668            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2669            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2670            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2671            -rm -f ftl_config.template
2672    
2673  #=========================================  #=========================================
2674    

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