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revision 1.15 by edhill, Tue Oct 21 18:35:08 2003 UTC revision 1.60 by edhill, Wed Jan 14 03:44:48 2004 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99
17      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99
18      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99
19          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99
20          exit 99  }
21      fi  
22      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1  # Search for particular CPP #cmds associated with MPI
23      RETVAL=$?  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
24      if test "x${RETVAL}" = x0 ; then  test_for_mpi_in_cpp_eeoptions() {
25          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"      cpp_options=$1
26          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99
27      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99
28      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99
29        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99
30    }
31    
32    # Search for particular string in a file. Return 1 if detected, 0 if not
33    # usage: test_for_string_in_file file string
34    test_for_string_in_file() {
35        file=$1
36        strng=$2
37        grep -i "$strng" $file > /dev/null 2>&1
38      RETVAL=$?      RETVAL=$?
39      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
40          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          echo -n "Error: In $file there is an illegal line: "
41          exit 99          grep -i "$strng" $file
42            return 1
43      fi      fi
44      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
45  }  }
46    
47  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
# Line 72  find_possible_configs()  { Line 77  find_possible_configs()  {
77    
78      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
79      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
80      PLATFORM=`echo $tmp2 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
81        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
82        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
83        PLATFORM=$tmp2
84      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
85      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
86            
87      echo "test" > test      echo "test" > test
88      ln -s ./test link      ln -s ./test link
# Line 103  find_possible_configs()  { Line 100  find_possible_configs()  {
100          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
101      fi      fi
102    
103        # makedepend is not always available
104        if test "x${MAKEDEPEND}" = x ; then
105          which makedepend >& /dev/null
106          RETVAL=$?
107          if test "x${RETVAL}" = x1 ; then
108             echo "    makedepend was not found. Using xmakedpend instead."
109             MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
110          fi
111        fi
112    
113      # look for possible fortran compilers      # look for possible fortran compilers
114      tmp="$MITGCM_FC $FC g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
115      p_FC=      p_FC=
116      for c in $tmp ; do      for c in $tmp ; do
117          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 121  EOF Line 128  EOF
128              p_FC="$p_FC $c"              p_FC="$p_FC $c"
129          fi          fi
130      done      done
131        rm -f ./hello.f ./hello
132      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
133          cat 1>&2 <<EOF          cat 1>&2 <<EOF
134    
# Line 204  get_pdepend_list()  { Line 212  get_pdepend_list()  {
212      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
213          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
214          > ./.pd_tmp          > ./.pd_tmp
215      source ./.pd_tmp      . ./.pd_tmp
216      rm -f ./.pd_tmp      rm -f ./.pd_tmp
217    
218      echo -n "PNAME = "${}      echo -n "PNAME = "${}
# Line 213  get_pdepend_list()  { Line 221  get_pdepend_list()  {
221    
222  #  Explain usage  #  Explain usage
223  usage()  {  usage()  {
224      echo  cat <<EOF
225      echo "Usage: "$0" [OPTIONS]"  
226      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
227      echo    where [OPTIONS] can be:
228      echo "    -help | --help | -h | --h"  
229      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
230      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
231      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
232      echo "    -pdepend NAME | --pdepend NAME"      -nooptfile | --nooptfile
233      echo "      -pdepend=NAME | --pdepend=NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
234      echo "    -pdefault NAME | --pdefault NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
235      echo "      -pdefault=NAME | --pdefault=NAME"            Use "NAME" as the optfile.  By default, an attempt will be
236      echo "    -make NAME | -m NAME"            made to find an appropriate "standard" optfile in the
237      echo "      --make=NAME | -m=NAME"            tools/build_options/ directory.
238      echo "    -makefile NAME | -mf NAME"  
239      echo "      --makefile=NAME | -mf=NAME"      -pdepend NAME | --pdepend NAME
240      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"        -pdepend=NAME | --pdepend=NAME
241      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            Get package dependency information from "NAME".
242      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"  
243      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"      -pdefault NAME | --pdefault NAME
244      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"        -pdefault=NAME | --pdefault=NAME
245      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"            Get the default package list from "NAME".
246      echo "    -disable NAME | --disable NAME"  
247      echo "      -disable=NAME | --disable=NAME"      -make NAME | -m NAME
248      echo "    -enable NAME | --enable NAME"        --make=NAME | -m=NAME
249      echo "      -enable=NAME | --enable=NAME"            Use "NAME" for the MAKE program. The default is "make" but
250      echo "    -standarddirs NAME | --standarddirs NAME"            many platforms, "gmake" is the preferred choice.
251      echo "      -standarddirs=NAME | --standarddirs=NAME"  
252      echo "    -noopt NAME | --noopt NAME"      -makefile NAME | -mf NAME
253      echo "      -noopt=NAME | --noopt=NAME"        --makefile=NAME | -mf=NAME
254  #    echo "    -cpp NAME | --cpp NAME"            Call the makefile "NAME".  The default is "Makefile".
255  #    echo "      -cpp=NAME | --cpp=NAME"  
256      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
257      echo "      -fc=NAME | --fc=NAME"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
258      echo "    -[no]ieee | --[no]ieee"            Specify the location of the MITgcm ROOTDIR as "NAME".
259      echo "    -[no]mpi | --[no]mpi"            By default, genamke will try to find the location by
260      echo "    -[no]jam | --[no]jam"            looking in parent directories (up to the 5th parent).
261      echo  
262      echo "  and NAME is a string such as:"      -mods NAME | --mods NAME | -mo NAME | --mo NAME
263      echo        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
264      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"            Here, "NAME" specifies a list of directories that are
265      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"            used for additional source code.  Files found in the
266      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"            "mods list" are given preference over files of the same
267      echo            name found elsewhere.
268      echo "  which, depending upon your shell, may need to be single-quoted"  
269      echo "  if it contains spaces, dashes, or other special characters."      -disable NAME | --disable NAME
270          -disable=NAME | --disable=NAME
271              Here "NAME" specifies a list of packages that we don't
272              want to use.  If this violates package dependencies,
273              genamke will exit with an error message.
274    
275        -enable NAME | --enable NAME
276          -enable=NAME | --enable=NAME
277              Here "NAME" specifies a list of packages that we wish
278              to specifically enable.  If this violates package
279              dependencies, genamke will exit with an error message.
280    
281        -standarddirs NAME | --standarddirs NAME
282          -standarddirs=NAME | --standarddirs=NAME
283              Here, "NAME" specifies a list of directories to be
284              used as the "standard" code.
285    
286        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
287          -fc=NAME | --fc=NAME
288              Use "NAME" as the fortran compiler.  By default, genmake
289              will search for a working compiler by trying a list of
290              "usual suspects" such as g77, f77, etc.
291    
292        -[no]ieee | --[no]ieee
293              Do or don't use IEEE numerics.  Note that this option
294              *only* works if it is supported by the OPTFILE that
295              is being used.
296    
297      While it is most often a single word, the "NAME" variables specified
298      above can in many cases be a space-delimited string such as:
299    
300        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
301        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
302        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
303    
304      which, depending upon your shell, may need to be single-quoted.
305    
306      For more detailed genmake documentation, please see:
307    
308        http://mitgcm.org/devel_HOWTO/
309    
310    EOF
311    
312      exit 1      exit 1
313  }  }
314    
315  #eh3 # This is the generic configuration.  #  Build a CPP macro to automate calling C routines from FORTRAN
316  #eh3 set LN         = ( 'ln -s' )  get_fortran_c_namemangling()  {
317  #eh3 set CPP        = ( '/lib/cpp -P' )      default_nm="#define FC_NAMEMANGLE(X) X ## _"
318  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      
319  #eh3 set KPP        = (  )      cat > genmake_test.c <<EOF
320  #eh3 set FC         = ( 'f77' )  void tcall( char * string ) { tsub( string ); }
321  #eh3 set LINK       = $FC  EOF
322  #eh3 set MAKEDEPEND = ( 'makedepend' )      $MAKE genmake_test.o >> genmake_warnings 2>&1
323  #eh3 set INCLUDES   = ( -I. )      RETVAL=$?
324  #eh3 set FFLAGS     = (  )      if test "x$RETVAL" != x0 ; then
325  #eh3 set FOPTIM     = (  )          FC_NAMEMANGLE=$default_nm
326  #eh3 set CFLAGS     = (  )          cat <<EOF>> genmake_errors
327  #eh3 set KFLAGS1    = (  )  
328  #eh3 set KFLAGS2    = (  )  WARNING: C test compile fails
329  #eh3 set LIBS       = (  )  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
330  #eh3 set KPPFILES   = (  )  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
331  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )  EOF
332  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )          return 1
333        fi
334        c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
335        RETVAL=$?
336        if test "x$RETVAL" != x0 ; then
337            FC_NAMEMANGLE=$default_nm
338            cat <<EOF>> genmake_warnings
339    
340    WARNING: The "nm" command failed.
341    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
342    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
343    EOF
344            return 1
345        fi
346        cat > genmake_tcomp.f <<EOF
347          subroutine tcall( string )
348          character*(*) string
349          call tsub( string )
350          end
351    EOF
352        $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1
353        RETVAL=$?
354        if test "x$RETVAL" != x0 ; then
355            FC_NAMEMANGLE=$default_nm
356            cat <<EOF>> genmake_warnings
357    
358    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
359    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
360    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
361    EOF
362            return 1
363        fi
364        f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
365        RETVAL=$?
366        if test "x$RETVAL" != x0 ; then
367            FC_NAMEMANGLE=$default_nm
368            cat <<EOF>> genmake_warnings
369    
370    WARNING: The "nm" command failed.
371    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
372    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
373    EOF
374            return 1
375        fi
376    
377        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
378        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
379        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
380        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
381    
382        nmangle="X"
383        if test "x$c_a" != "x$f_a" ; then
384            comm="echo x$f_a | sed -e 's|x$c_a||'"
385            a=`eval $comm`
386            nmangle="$a ## $nmangle"
387        fi
388        if test "x$c_b" != "x$f_b" ; then
389            comm="echo x$f_b | sed -e 's|x$c_b||'"
390            b=`eval $comm`
391            nmangle="$nmangle ## $b"
392        fi
393    
394        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
395    
396        #  cleanup the testing files
397        rm -f genmake_tcomp.* genmake_test.*
398    }
399    
400    
401    check_HAVE_CLOC()  {
402        get_fortran_c_namemangling
403        cat <<EOF > genmake_tc_1.c
404    $FC_NAMEMANGLE
405    #include <stdio.h>
406    #include <stdlib.h>
407    #include <unistd.h>
408    #include <assert.h>
409    #include <sys/time.h>
410    void FC_NAMEMANGLE(cloc) ( double *curtim )
411    {
412     struct timeval tv1;
413     gettimeofday(&tv1 , (void *)NULL );
414     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
415     *curtim = *curtim/1.E6;
416    }
417    EOF
418        make genmake_tc_1.o >> genmake_tc.log 2>&1
419        RET_C=$?
420        cat <<EOF > genmake_tc_2.f
421          program hello
422          Real*8 wtime
423          external cloc
424          call cloc(wtime)
425          print *," HELLO WORLD", wtime
426          end program hello
427    EOF
428        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
429        RET_F=$?
430        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
431        RETVAL=$?
432        if test "x$RETVAL" = x0 ; then
433            HAVE_CLOC=t
434            DEFINES="$DEFINES -DHAVE_CLOC"
435        fi
436        rm -f genmake_tc*
437    }
438    
439    
440    check_netcdf_libs()  {
441        cat <<EOF > genmake_tnc.F
442          program fgennc
443    #include "netcdf.inc"
444          integer iret, ncid, xid
445          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
446          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
447          iret = nf_def_dim(ncid, 'X', 11, xid)
448          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
449          iret = nf_close(ncid)
450          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
451          end
452    EOF
453        $CPP genmake_tnc.F > genmake_tnc.f  \
454            &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1
455        RET_COMPILE=$?
456        test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
457        RETVAL=$?
458        if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
459            HAVE_NETCDF=t
460        else
461            cat genmake_tnc.log >> genmake_warnings
462        fi
463        rm -f genmake_tnc*
464    }
465    
466    
467  #  Set defaults here  #  Set defaults here
468  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 289  LN= Line 472  LN=
472  S64=  S64=
473  KPP=  KPP=
474  FC=  FC=
475    CPP=
476  LINK=  LINK=
477  DEFINES="-DWORDLENGTH=4"  # DEFINES="-DWORDLENGTH=4"
478    DEFINES=
479  PACKAGES=  PACKAGES=
480  ENABLE=  ENABLE=
481  DISABLE=  DISABLE=
# Line 311  KPPFILES= Line 496  KPPFILES=
496  NOOPTFILES=  NOOPTFILES=
497  NOOPTFLAGS=  NOOPTFLAGS=
498    
499    # DEFINES checked by test compilation
500    HAVE_SYSTEM=
501    HAVE_FDATE=
502    FC_NAMEMANGLE=
503    HAVE_CLOC=
504    HAVE_NETCDF=
505    
506  MODS=  MODS=
507  TOOLSDIR=  TOOLSDIR=
508  SOURCEDIRS=  SOURCEDIRS=
509  INCLUDEDIRS=  INCLUDEDIRS=
510  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
511    
512  PWD=`pwd`  PWD=`pwd`
513  MAKE=make  MAKE=make
# Line 335  fi Line 527  fi
527    
528  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
529  AD_OPTFILE=  AD_OPTFILE=
530    TAF=
531    AD_TAF_FLAGS=
532    FTL_TAF_FLAGS=
533    SVD_TAF_FLAGS=
534    TAF_EXTRA=
535    TAMC=
536    AD_TAMC_FLAGS=
537    FTL_TAF_FLAGS=
538    SVD_TAMC_FLAGS=
539    TAMC_EXTRA=
540    
541    
542  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
543  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
544  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"
545    
546  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
547  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
548  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
549  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"
550  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
551    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"
552    
553  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
554  gm_s7="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF DIFF_FLAGS AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
555  gm_s8="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
556  gm_s9=""  gm_s12="TAF_EXTRA TAMC_EXTRA"
557    
558  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
559    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
560    
561    cat <<EOF
562    
563    GENMAKE :
564    
565    A program for GENerating MAKEfiles for the MITgcm project.  For a
566    quick list of options, use "genmake -h" or for more detail see:
567    
568      http://mitgcm.org/devel_HOWTO/
569    
570    EOF
571    
 echo  
572  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
573  gm_local="genmake_local"  gm_local="genmake_local"
574  for i in . $MODS ; do  for i in . $MODS ; do
575      if test -r $i/$gm_local ; then      if test -r $i/$gm_local ; then
576          source $i/$gm_local          . $i/$gm_local
577          break          break
578      fi      fi
579  done  done
580  echo -n "  getting local config information:  "  echo -n "  getting local config information:  "
581  if test -e $gm_local ; then  if test -e $gm_local ; then
582      echo "using $gm_local"      echo "using $gm_local"
583      source $gm_local      . $gm_local
584      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
585      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
586  else  else
# Line 408  for ac_option ; do Line 622  for ac_option ; do
622          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
623              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
624                    
625          -adoptfile | --adoptfile | -ad | --ad)          -adoptfile | --adoptfile | -adof | --adof)
626              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
627          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
628              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
# Line 433  for ac_option ; do Line 647  for ac_option ; do
647          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
648              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
649                    
650          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
651              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
652          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
653              PLATFORM=$ac_optarg ;;              echo
654                usage
655                ;;
656                    
657          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
658              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 463  for ac_option ; do Line 679  for ac_option ; do
679          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
680              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
681    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
682  #           -cpp | --cpp)  #           -cpp | --cpp)
683  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
684  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
# Line 483  for ac_option ; do Line 694  for ac_option ; do
694          -noieee | --noieee)          -noieee | --noieee)
695              IEEE= ;;              IEEE= ;;
696                    
697          -mpi | --mpi)  #       -jam | --jam)
698              MPI=true ;;  #           JAM=1 ;;
699          -nompi | --nompi)  #       -nojam | --nojam)
700              MPI= ;;  #           JAM=0 ;;
           
         -jam | --jam)  
             JAM=1 ;;  
         -nojam | --nojam)  
             JAM=0 ;;  
701                    
702          -ds | --ds)          -ds | --ds)
703              DUMPSTATE=t ;;              DUMPSTATE=t ;;
704                    
705            -taf_extra | --taf_extra)
706                ac_prev=TAF_EXTRA ;;
707            -taf_extra=* | --taf_extra=*)
708                TAF_EXTRA=$ac_optarg ;;
709    
710            -tamc_extra | --tamc_extra)
711                ac_prev=TAMC_EXTRA ;;
712            -tamc_extra=* | --tamc_extra=*)
713                TAMC_EXTRA=$ac_optarg ;;
714    
715          -*)          -*)
716              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
717              usage              usage
# Line 560  fi Line 776  fi
776  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
777      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
778          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
779          source "$OPTFILE"          . "$OPTFILE"
780          RETVAL=$?          RETVAL=$?
781          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
782              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""
# Line 587  fi Line 803  fi
803  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
804      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
805          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
806          source "$AD_OPTFILE"          . "$AD_OPTFILE"
807          RETVAL=$?          RETVAL=$?
808          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
809              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
# Line 603  if test "x${AD_OPTFILE}" != xNONE ; then Line 819  if test "x${AD_OPTFILE}" != xNONE ; then
819      fi      fi
820  fi  fi
821    
822  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
823  #  and abort!  #  either set defaults or complain and abort!
824  if test "x$FC" = x ; then  if test "x$FC" = x ; then
825      cat <<EOF 1>&2      cat <<EOF 1>&2
826    
# Line 621  fi Line 837  fi
837  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
838      CPP="cpp"      CPP="cpp"
839  fi  fi
840    if test "x$MAKE" = x ; then
841        MAKE="make"
842    fi
843  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
844  RETVAL=$?  RETVAL=$?
845  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 630  Error: C pre-processor "$CPP" failed the Line 849  Error: C pre-processor "$CPP" failed the
849    
850    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
851    2) the "./genmake_local" file    2) the "./genmake_local" file
852      3) with the CPP environment variable
853    
854  EOF  EOF
855      exit 1      exit 1
# Line 639  fi Line 859  fi
859  if test "x$MAKEDEPEND" = x ; then  if test "x$MAKEDEPEND" = x ; then
860      MAKEDEPEND=makedepend      MAKEDEPEND=makedepend
861  fi  fi
862    if test "x$LN" = x ; then
863        LN="ln -s"
864    fi
865    echo "test" > genmake_test_ln
866    $LN genmake_test_ln genmake_tlink
867    RETVAL=$?
868    if test "x$RETVAL" != x0 ; then
869        cat <<EOF 1>&2
870    
871    Error: The command "ln -s" failed -- please specify a working soft-link
872      command in the optfile.
873    
874    EOF
875        exit 1
876    fi
877    rm -f genmake_test_ln genmake_tlink
878    
879    
880    printf "\n===  Checking system libraries  ===\n"
881    echo -n "  Do we have the system() command using $FC...  "
882    cat > genmake_tcomp.f <<EOF
883          program hello
884          call system('echo hi')
885          end
886    EOF
887    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
888    RETVAL=$?
889    if test "x$RETVAL" = x0 ; then
890        HAVE_SYSTEM=t
891        DEFINES="$DEFINES -DHAVE_SYSTEM"
892        echo "yes"
893    else
894        HAVE_SYSTEM=
895        echo "no"
896    fi
897    rm -f genmake_tcomp*
898    
899    echo -n "  Do we have the fdate() command using $FC...  "
900    cat > genmake_tcomp.f <<EOF
901          program hello
902          CHARACTER(128) string
903          string = ' '
904          call fdate( string )
905          print *, string
906          end
907    EOF
908    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
909    RETVAL=$?
910    if test "x$RETVAL" = x0 ; then
911        HAVE_FDATE=t
912        DEFINES="$DEFINES -DHAVE_FDATE"
913        echo "yes"
914    else
915        HAVE_FDATE=
916        echo "no"
917    fi
918    rm -f genmake_tcomp*
919    
920    echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
921    check_HAVE_CLOC
922    if test "x$HAVE_CLOC" != x ; then
923        echo "yes"
924    else
925        echo "no"
926    fi
927    rm -f genmake_t*
928    
929    echo -n "  Can we create NetCDF-enabled binaries...  "
930    check_netcdf_libs
931    if test "x$HAVE_NETCDF" != x ; then
932        echo "yes"
933    else
934        echo "no"
935    fi
936    
937    
938  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
939  echo -n "  Adding MODS directories:  "  echo -n "  Adding MODS directories:  "
# Line 684  fi Line 979  fi
979  if test "x$S64" = x ; then  if test "x$S64" = x ; then
980      S64='$(TOOLSDIR)/set64bitConst.sh'      S64='$(TOOLSDIR)/set64bitConst.sh'
981  fi  fi
982    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
983    
984  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
985    
# Line 692  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 988  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
988  #  they appear as regular source code  #  they appear as regular source code
989  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
990      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
991      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
992      RETVAL=$?      RETVAL=$?
993      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
994          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 703  if test -r $ROOTDIR"/eesupp/src/Makefile Line 999  if test -r $ROOTDIR"/eesupp/src/Makefile
999      fi      fi
1000  fi  fi
1001    
1002    #same for exch2
1003    if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then
1004        echo "  Making source files in exch2 from  templates"
1005        ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1
1006        RETVAL=$?
1007        if test "x${RETVAL}" = x0 ; then
1008            rm -f make_exch2.errors
1009        else
1010            echo "Error: problem encountered while building source files in exch2:"
1011            cat make_exch2.errors
1012            exit 1
1013        fi
1014    fi
1015    
1016  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1017  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1018      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 729  if test ! "x${RETVAL}" = x0 ; then Line 1039  if test ! "x${RETVAL}" = x0 ; then
1039      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
1040      exit 1      exit 1
1041  fi  fi
1042  source ./.pd_tmp  . ./.pd_tmp
1043  rm -f ./.pd_tmp  rm -f ./.pd_tmp
1044    
1045  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1046  #  file should eventually be added so that, for convenience, one can  #  file should eventually be added so that, for convenience, one can
1047  #  specify groups of packages using names like "ocean" and "atmosphere".  #  specify groups of packages using names like "ocean" and "atmosphere".
1048  echo  -n "  checking default package list:  "  echo "  checking default package list:  "
1049  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1050      for i in "." $MODS ; do      for i in "." $MODS ; do
1051          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
# Line 748  if test "x${PDEFAULT}" = x ; then Line 1058  if test "x${PDEFAULT}" = x ; then
1058      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1059  fi  fi
1060  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1061      echo "default packages file disabled"      echo "    default packages file disabled"
1062  else  else
1063      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1064          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1065      else      else
1066          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1067          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1068          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1069          RETVAL=$?          RETVAL=$?
# Line 887  for i in $PACKAGES ; do Line 1196  for i in $PACKAGES ; do
1196      fi      fi
1197  done  done
1198    
1199  #  This is compatible with the old genmake.  The "DISABLE_*" flags  #  Check for ability to build and use NetCDF
1200  #  need to be replaced by the "ALLOW_*" flags set below.  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1201  #  RETVAL=$?
1202  # echo -n "  Setting package-specific CPP flags:  "  if test "x$RETVAL" = x0 -a "x$HAVE_NETCDF" != xt ; then
1203  # pkrm=( mom_fluxform mom_vecinv generic_advdiff )      cat <<EOF
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
 # Create a list of #define and #undef to enable/disable packages  
 PACKAGES_DOT_H=PACKAGES_CONFIG.h  
 cat <<EOF >$PACKAGES_DOT_H".tmp"  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
1204    
1205  #ifndef PACKAGES_H  WARNING: the "mnc" package has been enabled but tests failed to
1206  #define PACKAGES_H    compile and/or execute NetCDF applications.  Please check that:
1207    
1208  C  Packages disabled by genmake:    1) NetCDF is installed for your compiler and
1209      2) the LIBS variable (within the 'optfile") specifies the correct
1210           NetCDF library to link against.
1211      
1212  EOF  EOF
1213    fi
1214    
1215    # Create a list of #define and #undef to enable/disable packages
1216    PACKAGES_DOT_H=PACKAGES_CONFIG.h
1217  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
1218  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
1219  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
1220  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
1221  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
1222  all_pack=  all_pack=
1223    DISABLED_PACKAGES=
1224  for n in $names ; do  for n in $names ; do
1225      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
1226          has_pack="f"          has_pack="f"
# Line 937  for n in $names ; do Line 1232  for n in $names ; do
1232          done          done
1233          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1234              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1235              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
 #           DEFINES="$DEFINES -U$undef"  
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
1236          fi          fi
1237      fi      fi
1238  done  done
1239  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
1240  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1241      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1242      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
1243  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
1244    
1245  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1246      case $i in      case $i in
1247          aim_v23)          aim_v23)
1248              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
1249              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
1250              ;;              ;;
1251      esac      esac
1252  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1253    
1254  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
1255    
1256  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1257  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1258  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1259      STANDARDDIRS="eesupp model"      STANDARDDIRS="eesupp model"
1260  fi  fi
1261  for d in $STANDARDDIRS ; do  if test "x$STANDARDDIRS" != x ; then
1262      adr="$ROOTDIR/$d/src"      for d in $STANDARDDIRS ; do
1263      if test ! -d $adr ; then          adr="$ROOTDIR/$d/src"
1264          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1265          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1266          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1267      else              exit 1
1268          SOURCEDIRS="$SOURCEDIRS $adr"          else
1269      fi              SOURCEDIRS="$SOURCEDIRS $adr"
1270      adr="$ROOTDIR/$d/inc"          fi
1271      if test ! -d $adr ; then          adr="$ROOTDIR/$d/inc"
1272          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1273          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1274          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1275      else              exit 1
1276          INCLUDEDIRS="$INCLUDEDIRS $adr"          else
1277      fi              INCLUDEDIRS="$INCLUDEDIRS $adr"
1278  done          fi
1279        done
1280    fi
1281    
1282  echo " Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
1283  echo " of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
1284  CPP_OPTIONS=  CPP_OPTIONS=
1285    CPP_EEOPTIONS=
1286  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
1287    names=`ls -1 "$ROOTDIR/pkg"`
1288  for i in $spaths ; do  for i in $spaths ; do
1289      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
1290      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
1291          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
1292          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
1293          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
1294            for n in $names ; do
1295                test_for_package_in_cpp_options $CPP_OPTIONS $n
1296            done
1297        fi
1298        try="$i/CPP_EEOPTIONS.h"
1299        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
1300            echo "    found CPP_EEOPTIONS=\"$try\""
1301            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
1302    #**** not yet enabled ****
1303    #        test_for_mpi_in_cpp_eeoptions $try
1304    #**** not yet enabled ****
1305            CPP_EEOPTIONS="$try"
1306      fi      fi
1307  done  done
1308  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
1309      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
1310      exit 1      exit 1
1311  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
1312    
1313  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
1314  #  compiler.  #  compiler.
# Line 1056  for i in $SOURCEDIRS ; do Line 1323  for i in $SOURCEDIRS ; do
1323      done      done
1324  done  done
1325    
 cat <<EOF > adjoint_sed  
 s/call adopen(/call adopen ( mythid,\\  
      \&           /g  
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
1326    
1327  echo  echo
1328  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
# Line 1097  for d in $alldirs ; do Line 1353  for d in $alldirs ; do
1353      for sf in $sfiles ; do      for sf in $sfiles ; do
1354          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1355              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1356                    case $d/$sf in
1357                      ./$PACKAGES_DOT_H)
1358                            ;;
1359                      ./AD_CONFIG.h)
1360                            ;;
1361                      ./FC_NAMEMANGLE.h)
1362                            ;;
1363                      *)
1364                            touch .links.tmp/$sf
1365                            deplist="$deplist $sf"
1366                            ;;
1367                    esac
1368                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`
                 touch .links.tmp/$sf  
                 deplist="$deplist $sf"  
1369                  case $extn in                  case $extn in
1370                      F)                      F)
1371                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
# Line 1151  echo "# by the command:" >> $MAKEFILE Line 1417  echo "# by the command:" >> $MAKEFILE
1417  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $@" >> $MAKEFILE
1418  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1419  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE
1420    
1421    EXE_AD=$EXECUTABLE"_ad"
1422    EXE_FTL=$EXECUTABLE"_ftl"
1423    EXE_SVD=$EXECUTABLE"_svd"
1424    
1425  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1426    #
1427    # OPTFILE="$OPTFILE"
1428  #  #
1429  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
1430  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 1181  TOOLSDIR    = ${TOOLSDIR} Line 1454  TOOLSDIR    = ${TOOLSDIR}
1454    
1455  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
1456  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
1457    EXE_AD      = ${EXE_AD}
1458    EXE_FTL     = ${EXE_FTL}
1459    EXE_SVD     = ${EXE_SVD}
1460    
1461    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1462    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1463    
1464    # These files are created by Makefile
1465    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h
1466    
1467  EOF  EOF
1468    
# Line 1246  cat >>$MAKEFILE <<EOF Line 1528  cat >>$MAKEFILE <<EOF
1528  .SUFFIXES: .o .f .p .F .c .F90 .f90  .SUFFIXES: .o .f .p .F .c .F90 .f90
1529    
1530  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1531  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
1532            @echo Creating \$@ ...
1533          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1534  depend:  depend:
1535          @make links          @make links
1536          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1537          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1538    
1539  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
1540    
1541  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
1542    
# Line 1262  output.txt: \$(EXECUTABLE) Line 1545  output.txt: \$(EXECUTABLE)
1545          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1546    
1547  clean:  clean:
1548          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template
1549  Clean:  Clean:
1550          @make clean          @make clean
1551          @make cleanlinks          @make cleanlinks
1552          -rm -f Makefile.bak genmake_state genmake_optfile make.log          -rm -f \$(SPECIAL_FILES)
1553            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
1554  CLEAN:  CLEAN:
1555          @make Clean          @make Clean
1556          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
# Line 1274  CLEAN: Line 1558  CLEAN:
1558          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
1559          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) output.txt
1560    
1561  Makefile: makefile  #eh3 Makefile: makefile
1562  makefile:  makefile:
1563          ${0} $@          $THIS_SCRIPT $@
1564  cleanlinks:  cleanlinks:
1565          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1566    
1567    # Special targets ($SPECIAL_FILES) which are create by make
1568    ${PACKAGES_DOT_H}:
1569            @echo Creating \$@ ...
1570            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
1571    AD_CONFIG.h:
1572            @echo Creating \$@ ...
1573            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1574    FC_NAMEMANGLE.h:
1575            @echo Creating \$@ ...
1576            echo "$FC_NAMEMANGLE" > \$@
1577    
1578  # The normal chain of rules is (  .F - .f - .o  )  # The normal chain of rules is (  .F - .f - .o  )
1579  .F.f:  .F.f:
1580          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
# Line 1304  cleanlinks: Line 1599  cleanlinks:
1599  TAMC           = ${TAMC}  TAMC           = ${TAMC}
1600  TAF            = ${TAF}  TAF            = ${TAF}
1601    
1602    TAF_EXTRA      = ${TAF_EXTRA}
1603    TAMC_EXTRA     = ${TAMC_EXTRA}
1604    
1605  EOF  EOF
1606    
1607  ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"  ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 1326  for i in $AD_FILES ; do Line 1624  for i in $AD_FILES ; do
1624      echo -n " $i" >> $MAKEFILE      echo -n " $i" >> $MAKEFILE
1625  done  done
1626  echo >> $MAKEFILE  echo >> $MAKEFILE
1627    rm -f ad_files
1628    
1629  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1630    
1631    # ... AD ...
1632  ad_input_code.f: \$(F77FILES)  adall: ad_taf
1633    adtaf: ad_taf_output.f
1634    adtamc: ad_tamc_output.f
1635    
1636    ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1637            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
1638            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
1639            -rm -f ad_config.template
1640            @make \$(F77FILES)
1641          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
1642          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
1643    
   
1644  ad_taf_output.f: ad_input_code.f  ad_taf_output.f: ad_input_code.f
1645          \$(TAF) \$(AD_TAF_FLAGS) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1646          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1647    
1648  ad_taf: ad_taf_output.o \$(OBJFILES)  adtafonly:
1649          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1650            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1651    
1652    ad_taf: ad_taf_output.o \$(OBJFILES)
1653            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
1654    
1655  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.f: ad_input_code.f
1656          \$(TAMC) \$(AD_TAMC_FLAGS) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
1657          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f
1658    
1659  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
1660          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
1661    
1662    
1663    # ... FTL ...
1664    ftlall: ftl_taf
1665    ftltaf: ftl_taf_output.f
1666    ftltamc: ftl_tamc_output.f
1667    
1668    ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1669            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
1670            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
1671            -rm -f ftl_config.template
1672            @make \$(F77FILES)
1673            @make \$(AD_FLOW_FILES)
1674            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
1675    
1676    ftl_taf_output.f: ftl_input_code.f
1677            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1678            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1679    
1680    ftltafonly:
1681            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1682            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1683    
1684    ftl_taf: ftl_taf_output.o \$(OBJFILES)
1685            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
1686    
1687  flt_taf_output.f: ad_input_code.f  ftl_tamc_output.f: ftl_input_code.f
1688          \$(TAF) \$(FTL_TAF_FLAGS) ad_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
1689          cat ad_input_code_ad.f | sed -f adjoint_sed > flt_taf_output.f          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f
1690    
1691  flt_taf: flt_taf_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
1692          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) flt_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
1693    
1694    
1695    # ... SVD ...
1696    svdtaf: ad_taf_output.f ftl_taf_output.f
1697    svdall: svd_taf
1698    
1699    svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)
1700            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
1701    
1702    
1703  #=========================================  #=========================================
1704    
# Line 1398  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 1738  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
1738    
1739  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
1740    
1741    # Create special header files
1742    $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
1743    if test ! -f $PACKAGES_DOT_H ; then
1744        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1745    else
1746        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1747        RETVAL=$?
1748        if test "x$RETVAL" = x0 ; then
1749            rm -f $PACKAGES_DOT_H".tmp"
1750        else
1751            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
1752            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1753        fi
1754    fi
1755    if test ! -f AD_CONFIG.h ; then
1756        $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
1757    fi
1758    
1759    
1760  #  Write the "state" for future records  #  Write the "state" for future records
1761  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then

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