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revision 1.13.2.1 by edhill, Mon Oct 20 04:01:30 2003 UTC revision 1.141 by edhill, Wed Jan 11 06:02:31 2006 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99
17      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99
18      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99
19          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99
20          exit 99  }
21      fi  
22      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1  # Search for particular CPP #cmds associated with MPI
23      RETVAL=$?  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
24      if test "x${RETVAL}" = x0 ; then  test_for_mpi_in_cpp_eeoptions() {
25          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"      cpp_options=$1
26          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99
27      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99
28      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99
29        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99
30    }
31    
32    # Search for particular string in a file. Return 1 if detected, 0 if not
33    # usage: test_for_string_in_file file string
34    test_for_string_in_file() {
35        file=$1
36        strng=$2
37        grep -i "$strng" $file > /dev/null 2>&1
38      RETVAL=$?      RETVAL=$?
39      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
40          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
41          exit 99          grep -i "$strng" $file
42            return 1
43      fi      fi
44      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
45  }  }
46    
47  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
# Line 46  expand_pkg_groups() { Line 51  expand_pkg_groups() {
51      PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"      PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"
52      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
53          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
54          cat ./p1.tmp | awk '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
55          matched=0          matched=0
56          for i in $PACKAGES ; do          for i in $PACKAGES ; do
57              line=`grep "^ *$i" ./p2.tmp`              line=`grep "^ *$i" ./p2.tmp`
58              RETVAL=$?              RETVAL=$?
59              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
60                  matched=1                  matched=1
61                  replace=`echo $line | awk '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
62                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with: $replace"
63                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
64              else              else
# Line 62  expand_pkg_groups() { Line 67  expand_pkg_groups() {
67          done          done
68          PACKAGES=$new_packages          PACKAGES=$new_packages
69          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
70            return $matched
71      else      else
72          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
73      fi      fi
74  }  }
75    
76    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
77    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
78    check_for_broken_Ff()  {
79        #  Do we have defaults for $FS and/or $FS90 ?
80        tfs=f
81        tfs9=f90
82        if test "x$FS" != x ; then
83            tfs="$FS"
84        fi
85        if test "x$FS90" != x ; then
86            tfs9="$FS90"
87        fi
88    
89        #  First check the ability to create a *.F/.f pair.
90        cat <<EOF >> genmake_hello.F
91          program hello
92          write(*,*) 'hi'
93          stop
94          end
95    EOF
96        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
97        RETVAL=$?
98        if test "x$RETVAL" != x0 ; then
99            if test "x$FS" = x ; then
100                FS='for'
101                FS90='fr9'
102                check_for_broken_Ff
103            else
104                cat <<EOF 2>&1
105    ERROR: Your file system cannot distinguish between *.F and *.f files
106      (fails the "cp" test) and this program cannot find a suitable
107      replacement extension.  Please try a different build environment or
108      contact the <MITgcm-support@mitgcm.org> list for help.
109    
110    EOF
111                exit -1
112            fi
113            return
114        fi
115        rm -f genmake_hello.*
116    
117        #  Check the ability of ${MAKE} and ${LN} to use the current set
118        #  of extensions.
119        cat <<EOF >> genmake_hello.F
120          program hello
121          write(*,*) 'hi'
122          stop
123          end
124    EOF
125        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
126        cat <<EOF >> $MAKEFILE
127    .SUFFIXES:
128    .SUFFIXES: .$tfs .F
129    .F.$tfs:
130            $LN \$< \$@
131    EOF
132        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
133        RETVAL=$?
134        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
135            if test "x$FS" = x ; then
136                FS='for'
137                FS90='fr9'
138                check_for_broken_Ff
139            else
140                cat <<EOF 2>&1
141    ERROR: Your file system cannot distinguish between *.F and *.f files
142      (fails the "make/ln" test) and this program cannot find a suitable
143      replacement extension.  Please try a different build environment or
144      contact the <MITgcm-support@mitgcm.org> list for help.
145    
146    EOF
147                exit -1
148                return
149            fi
150        fi
151        rm -f genmake_hello.* $MAKEFILE
152        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
153    
154        #  If we make it here, use the extensions
155        FS=$tfs
156        FS90=$tfs9
157        return
158    }
159    
160    
161    look_for_makedepend()  {
162    
163        #  The "original" makedepend is part of the Imake system that is
164        #  most often distributed with XFree86 or with an XFree86 source
165        #  package.  As a result, many machines (eg. generic Linux) do not
166        #  have a system-default "makedepend" available.  For those
167        #  systems, we have two fall-back options:
168        #
169        #    1) a makedepend implementation shipped with the cyrus-imapd
170        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
171        #
172        #    2) a known-buggy xmakedpend shell script
173        #
174        #  So the choices are, in order:
175        #
176        #    1) use the user-specified program
177        #    2) use a system-wide default
178        #    3) locally build and use the cyrus implementation
179        #    4) fall back to the buggy local xmakedpend script
180        #
181        if test "x${MAKEDEPEND}" = x ; then
182            which makedepend > /dev/null 2>&1
183            RV0=$?
184            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
185            #  echo 'MAKEFILE="'$MAKEFILE'"'
186            cat <<EOF >> $MAKEFILE
187    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
188    #
189    #   Some "makedepend" implementations will die if they cannot
190    #   find a Makefile -- so this file is here to gives them an
191    #   empty one to find and parse.
192    EOF
193            cat <<EOF >> genmake_tc.f
194          program test
195          write(*,*) 'test'
196          stop
197          end
198    EOF
199            makedepend genmake_tc.f > /dev/null 2>&1
200            RV1=$?
201            test -f $MAKEFILE  &&  rm -f $MAKEFILE
202            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
203            if test "x${RV0}${RV1}" = x00 ; then
204                MAKEDEPEND=makedepend
205            else
206                echo "    a system-default makedepend was not found."
207                
208                #  Try to build the cyrus implementation
209                build_cyrus_makedepend
210                RETVAL=$?
211                if test "x$RETVAL" != x0 ; then
212                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
213                fi
214                rm -f ./genmake_cy_md
215            fi
216        else
217            #  echo "MAKEDEPEND=${MAKEDEPEND}"
218            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
219            RETVAL=$?
220            if test x"$RETVAL" = x0 ; then
221                build_cyrus_makedepend
222            fi
223        fi
224    }
225    
226    
227    build_cyrus_makedepend()  {
228        rm -f ./genmake_cy_md
229        (
230            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
231                &&  ./configure > /dev/null 2>&1  \
232                &&  make > /dev/null 2>&1
233            if test -x ./makedepend.exe ; then
234                $LN ./makedepend.exe ./makedepend
235            fi
236            ./makedepend ifparser.c > /dev/null 2>&1  \
237                &&  echo "true"
238        ) > ./genmake_cy_md
239        grep true ./genmake_cy_md > /dev/null 2>&1
240        RETVAL=$?
241        rm -f ./genmake_cy_md
242        if test "x$RETVAL" = x0 ; then
243            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
244            return 0
245        else
246            echo "WARNING: unable to build cyrus-imapd-makedepend"
247            return 1
248        fi
249    }
250    
251    
252    build_embed_encode()
253    {
254        printf "  building the embed-encode utility...  "
255        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
256            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
257                echo
258                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
259                echo
260                EMBED_SRC=f
261                return 1
262            fi
263            clist="cc gcc c89 $CC"
264            for ic in $clist ; do
265                comm="$ic -o encode_files encode_files.c"
266                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
267                RETVAL=$?
268                if test "x$RETVAL" = x0 ; then
269                    echo "OK"
270                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
271                    return 0
272                fi
273            done
274            echo
275            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
276            echo "      so it has been disabled"
277            echo
278            EMBED_SRC=f
279            return 1
280        fi
281        echo "OK"
282        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
283    }
284    
285    
286  # Guess possible config options for this host  # Guess possible config options for this host
287  find_possible_configs()  {  find_possible_configs()  {
288    
289      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
290      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
291      PLATFORM=`echo $tmp2 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
292        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
293        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
294        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
295        PLATFORM=$tmp3
296        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
297      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
298      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
299            
300      echo "test" > test      echo "test" > test
301      ln -s ./test link      ln -s ./test link
# Line 103  find_possible_configs()  { Line 313  find_possible_configs()  {
313          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
314      fi      fi
315    
316      # look for possible fortran compilers      look_for_makedepend
317      tmp="$MITGCM_FC $FC g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"  
318        #================================================================
319        #  look for possible C compilers
320        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"
321        p_CC=
322        for c in $tmp ; do
323            rm -f ./genmake_hello.c  ./genmake_hello
324            cat >> genmake_hello.c << EOF
325    #include <stdio.h>
326    int main(int argc, char **argv) {
327      printf("Hello!\n");
328      return 0;
329    }
330    EOF
331            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
332            RETVAL=$?
333            if test "x${RETVAL}" = x0 ; then
334                p_CC="$p_CC $c"
335            fi
336        done
337        rm -f ./genmake_hello.c ./genmake_hello
338        if test "x${p_CC}" = x ; then
339            cat 1>&2 <<EOF
340    
341    Error: No C compilers were found in your path.  Please specify one using:
342    
343        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
344        2) the CC or MITGCM_CC environment variables.
345    
346    EOF
347            exit 1
348        else
349            echo "  The possible C compilers found in your path are:"
350            echo "   "$p_CC
351            if test "x$CC" = x ; then
352                CC=`echo $p_CC | $AWK '{print $1}'`
353                echo "  Setting C compiler to: "$CC
354            fi
355        fi
356    
357        #================================================================
358        #  look for possible FORTRAN compilers
359        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 gfortran"
360      p_FC=      p_FC=
361      for c in $tmp ; do      for c in $tmp ; do
362          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 121  EOF Line 373  EOF
373              p_FC="$p_FC $c"              p_FC="$p_FC $c"
374          fi          fi
375      done      done
376        rm -f ./hello.f ./hello
377      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
378          cat 1>&2 <<EOF          cat 1>&2 <<EOF
379    
# Line 128  Error: No Fortran compilers were found i Line 381  Error: No Fortran compilers were found i
381    
382      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
383      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
384      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
385    
386  EOF  EOF
387          exit 1          exit 1
388      else      else
389          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
390          echo "   "$p_FC          echo "   "$p_FC
         if test "x$FC" = x ; then  
             FC=`echo $p_FC | awk '{print $1}'`  
         fi  
391      fi      fi
392    
393      for i in $p_FC ; do      #  Use the first of the compilers found in the current PATH
394          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i      #  that has a correctly-named optfile
395          if test -r $p_OF ; then      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
396              OPTFILE=$p_OF          for i in $p_FC ; do
397              echo "  The options file:  $p_OF"              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
398              echo "    appears to match so we'll use it."              if test -r $OPTFILE ; then
399              break                  echo "  Setting OPTFILE to: "$OPTFILE
400          fi                  break
401      done              fi
402            done
403        fi
404    
405        if test "x$OPTFILE" = x ; then
406            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
407            if test ! -r $OPTFILE ; then
408                 echo "  I looked for the file "$OPTFILE" but did not find it"
409            fi
410        fi
411    #    echo "  The options file:  $p_OF"
412    #    echo "    appears to match so we'll use it."
413    #   for i in $p_FC ; do
414    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
415    #if test -r $p_OF ; then
416    #    OPTFILE=$p_OF
417    #    echo "  The options file:  $p_OF"
418    #    echo "    appears to match so we'll use it."
419    #    break
420    #fi
421    #   done
422      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
423          cat 1>&2 <<EOF          cat 1>&2 <<EOF
424    
# Line 202  get_pdepend_list()  { Line 472  get_pdepend_list()  {
472      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
473      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
474      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
475          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
476          > ./.pd_tmp          > ./.pd_tmp
477      source ./.pd_tmp      . ./.pd_tmp
478      rm -f ./.pd_tmp      rm -f ./.pd_tmp
479    
480      echo -n "PNAME = "${}      printf "PNAME = "${}
481  }  }
482    
483    
484  #  Explain usage  #  Explain usage
485  usage()  {  usage()  {
486      echo  cat <<EOF
487      echo "Usage: "$0" [OPTIONS]"  
488      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
489      echo    where [OPTIONS] can be:
490      echo "    -help | --help | -h | --h"  
491      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
492      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
493      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
494      echo "    -pdepend NAME | --pdepend NAME"      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
495      echo "      -pdepend=NAME | --pdepend=NAME"        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
496      echo "    -pdefault NAME | --pdefault NAME"            Use "NAME" as the adoptfile.  By default, the file at
497      echo "      -pdefault=NAME | --pdefault=NAME"            "tools/adjoint_options/adjoint_default" will be used.
498      echo "    -make NAME | -m NAME"  
499      echo "      --make=NAME | -m=NAME"      -nooptfile | --nooptfile
500      echo "    -makefile NAME | -mf NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
501      echo "      --makefile=NAME | -mf=NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
502      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"            Use "NAME" as the optfile.  By default, an attempt will be
503      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            made to find an appropriate "standard" optfile in the
504      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"            tools/build_options/ directory.
505      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"  
506      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"      -pdepend NAME | --pdepend NAME
507      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"        -pdepend=NAME | --pdepend=NAME
508      echo "    -disable NAME | --disable NAME"            Get package dependency information from "NAME".
509      echo "      -disable=NAME | --disable=NAME"  
510      echo "    -enable NAME | --enable NAME"      -pdefault NAME | --pdefault NAME
511      echo "      -enable=NAME | --enable=NAME"        -pdefault=NAME | --pdefault=NAME
512      echo "    -standarddirs NAME | --standarddirs NAME"            Get the default package list from "NAME".
513      echo "      -standarddirs=NAME | --standarddirs=NAME"  
514      echo "    -noopt NAME | --noopt NAME"      -make NAME | -m NAME
515      echo "      -noopt=NAME | --noopt=NAME"        --make=NAME | -m=NAME
516  #    echo "    -cpp NAME | --cpp NAME"            Use "NAME" for the MAKE program. The default is "make" but
517  #    echo "      -cpp=NAME | --cpp=NAME"            many platforms, "gmake" is the preferred choice.
518      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"  
519      echo "      -fc=NAME | --fc=NAME"      -makefile NAME | -mf NAME
520      echo "    -[no]ieee | --[no]ieee"        --makefile=NAME | -mf=NAME
521      echo "    -[no]mpi | --[no]mpi"            Call the makefile "NAME".  The default is "Makefile".
522      echo "    -[no]jam | --[no]jam"  
523      echo      -makedepend NAME | -md NAME
524      echo "  and NAME is a string such as:"        --makedepend=NAME | -md=NAME
525      echo            Use "NAME" for the MAKEDEPEND program.
526      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"  
527      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
528      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
529      echo            Specify the location of the MITgcm ROOTDIR as "NAME".
530      echo "  which, depending upon your shell, may need to be single-quoted"            By default, genamke will try to find the location by
531      echo "  if it contains spaces, dashes, or other special characters."            looking in parent directories (up to the 5th parent).
532    
533        -mods NAME | --mods NAME | -mo NAME | --mo NAME
534          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
535              Here, "NAME" specifies a list of directories that are
536              used for additional source code.  Files found in the
537              "mods list" are given preference over files of the same
538              name found elsewhere.
539    
540        -disable NAME | --disable NAME
541          -disable=NAME | --disable=NAME
542              Here "NAME" specifies a list of packages that we don't
543              want to use.  If this violates package dependencies,
544              genamke will exit with an error message.
545    
546        -enable NAME | --enable NAME
547          -enable=NAME | --enable=NAME
548              Here "NAME" specifies a list of packages that we wish
549              to specifically enable.  If this violates package
550              dependencies, genamke will exit with an error message.
551    
552        -standarddirs NAME | --standarddirs NAME
553          -standarddirs=NAME | --standarddirs=NAME
554              Here, "NAME" specifies a list of directories to be
555              used as the "standard" code.
556    
557        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
558          -fc=NAME | --fc=NAME
559              Use "NAME" as the fortran compiler.  By default, genmake
560              will search for a working compiler by trying a list of
561              "usual suspects" such as g77, f77, etc.
562    
563        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
564              Use "NAME" as the C compiler.  By default, genmake
565              will search for a working compiler by trying a list of
566              "usual suspects" such as gcc, c89, cc, etc.
567    
568        -[no]ieee | --[no]ieee
569              Do or don't use IEEE numerics.  Note that this option
570              *only* works if it is supported by the OPTFILE that
571              is being used.
572    
573        -ts | --ts
574              Produce timing information per timestep
575        -papis | --papis
576              Produce summary MFlop/s with PAPI per timestep
577        -foolad | --foolad
578              Fool the AD code generator
579        -papi | --papi
580              Performance analysis with PAPI
581        -hpmt | --hpmt
582              Performance analysis with the HPM Toolkit
583    
584        -gsl | --gsl
585              Use GSL to control floating point rounding and precision
586    
587        -mpi | --mpi
588              Include MPI header files and link to MPI libraries
589        -mpi=PATH | --mpi=PATH
590              Include MPI header files and link to MPI libraries using MPI_ROOT
591              set to PATH. i.e. Include files from \$PATH/include, link to libraries
592              from \$PATH/lib and use binaries from \$PATH/bin.
593    
594        -es | --es | -embed-source | --embed-source
595              Embed a tarball containing the full source code
596              (including the Makefile, etc.) used to build the
597              executable [off by default]
598    
599        -bash NAME
600              Explicitly specify the Bourne or BASH shell to use
601    
602      While it is most often a single word, the "NAME" variables specified
603      above can in many cases be a space-delimited string such as:
604    
605        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
606        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
607        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
608    
609      which, depending upon your shell, may need to be single-quoted.
610    
611      For more detailed genmake documentation, please see:
612    
613        http://mitgcm.org/devel_HOWTO/
614    
615    EOF
616    
617      exit 1      exit 1
618  }  }
619    
620  #eh3 # This is the generic configuration.  #  Build a CPP macro to automate calling C routines from FORTRAN
621  #eh3 set LN         = ( 'ln -s' )  get_fortran_c_namemangling()  {
622  #eh3 set CPP        = ( '/lib/cpp -P' )  
623  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
624  #eh3 set KPP        = (  )      if test ! "x$FC_NAMEMANGLE" = x ; then
625  #eh3 set FC         = ( 'f77' )          return 0
626  #eh3 set LINK       = $FC      fi
627  #eh3 set MAKEDEPEND = ( 'makedepend' )  
628  #eh3 set INCLUDES   = ( -I. )      default_nm="#define FC_NAMEMANGLE(X) X ## _"
629  #eh3 set FFLAGS     = (  )      
630  #eh3 set FOPTIM     = (  )      cat > genmake_test.c <<EOF
631  #eh3 set CFLAGS     = (  )  void tcall( char * string ) { tsub( string ); }
632  #eh3 set KFLAGS1    = (  )  EOF
633  #eh3 set KFLAGS2    = (  )      $MAKE genmake_test.o >> genmake_warnings 2>&1
634  #eh3 set LIBS       = (  )      RETVAL=$?
635  #eh3 set KPPFILES   = (  )      if test "x$RETVAL" != x0 ; then
636  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )          FC_NAMEMANGLE=$default_nm
637  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )          cat <<EOF>> genmake_errors
638    
639    WARNING: C test compile fails
640    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
641    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
642    EOF
643            return 1
644        fi
645        c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
646        RETVAL=$?
647        if test "x$RETVAL" != x0 ; then
648            FC_NAMEMANGLE=$default_nm
649            cat <<EOF>> genmake_warnings
650    
651    WARNING: The "nm" command failed.
652    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
653    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
654    EOF
655            return 1
656        fi
657        cat > genmake_tcomp.$FS <<EOF
658          subroutine tcall( string )
659          character*(*) string
660          call tsub( string )
661          end
662    EOF
663        $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
664        RETVAL=$?
665        if test "x$RETVAL" != x0 ; then
666            FC_NAMEMANGLE=$default_nm
667            cat <<EOF>> genmake_warnings
668    
669    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
670    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
671    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
672    EOF
673            return 1
674        fi
675        f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
676        RETVAL=$?
677        if test "x$RETVAL" != x0 ; then
678            FC_NAMEMANGLE=$default_nm
679            cat <<EOF>> genmake_warnings
680    
681    WARNING: The "nm" command failed.
682    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
683    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
684    EOF
685            return 1
686        fi
687    
688        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
689        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
690        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
691        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
692    
693        nmangle="X"
694        if test "x$c_a" != "x$f_a" ; then
695            comm="echo x$f_a | sed -e 's|x$c_a||'"
696            a=`eval $comm`
697            nmangle="$a ## $nmangle"
698        fi
699        if test "x$c_b" != "x$f_b" ; then
700            comm="echo x$f_b | sed -e 's|x$c_b||'"
701            b=`eval $comm`
702            nmangle="$nmangle ## $b"
703        fi
704    
705        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
706    
707        #  cleanup the testing files
708        rm -f genmake_tcomp.* genmake_test.*
709    }
710    
711    
712    check_HAVE_CLOC()  {
713        get_fortran_c_namemangling
714        cat <<EOF > genmake_tc_1.c
715    $FC_NAMEMANGLE
716    #include <stdio.h>
717    #include <stdlib.h>
718    #include <unistd.h>
719    #include <assert.h>
720    #include <sys/time.h>
721    void FC_NAMEMANGLE(cloc) ( double *curtim )
722    {
723     struct timeval tv1;
724     gettimeofday(&tv1 , (void *)NULL );
725     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
726     *curtim = *curtim/1.E6;
727    }
728    EOF
729        make genmake_tc_1.o >> genmake_warnings 2>&1
730        RET_C=$?
731        cat <<EOF > genmake_tc_2.$FS
732          program hello
733          REAL*8 wtime
734          external cloc
735          call cloc(wtime)
736          print *," HELLO WORLD", wtime
737          end
738    EOF
739        $FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o >> genmake_warnings 2>&1
740        RET_F=$?
741        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
742        RETVAL=$?
743        if test "x$RETVAL" = x0 ; then
744            HAVE_CLOC=t
745            DEFINES="$DEFINES -DHAVE_CLOC"
746        fi
747        rm -f genmake_tc*
748    }
749    
750    
751    check_HAVE_SIGREG()  {
752        get_fortran_c_namemangling
753        cat <<EOF > genmake_tc_1.c
754    $FC_NAMEMANGLE
755    #include <stdlib.h>
756    #include <stdio.h>
757    #include <signal.h>
758    #include <errno.h>
759    #include <ucontext.h>
760    
761    int * ip;
762    
763    static void killhandler(
764        unsigned int sn, siginfo_t  si, struct ucontext *sc )
765    {
766        *ip = *ip + 1;
767        return;
768    }
769    
770    void FC_NAMEMANGLE(sigreg) (int * aip)
771    {
772        struct sigaction s;
773        ip = aip;
774        s.sa_flags = SA_SIGINFO;
775        s.sa_sigaction = (void *)killhandler;
776        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
777            printf("Sigaction returned error = %d\n", errno);
778            exit(0);
779        }
780        return;
781    }
782    EOF
783        make genmake_tc_1.o >> genmake_warnings 2>&1
784        RET_C=$?
785        cat <<EOF > genmake_tc_2.$FS
786          program hello
787          integer anint
788          common /iv/ anint
789          external sigreg
790          call sigreg(anint)
791          end
792    EOF
793        echo >> genmake_warnings
794        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
795        cat genmake_tc_2.$FS >> genmake_warnings
796        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
797        echo $COMM >> genmake_warnings
798        $COMM >> genmake_warnings 2>&1
799        RETVAL=$?
800        if test "x$RETVAL" = x0 ; then
801            HAVE_SIGREG=t
802            DEFINES="$DEFINES -DHAVE_SIGREG"
803        fi
804        rm -f genmake_tc*
805    }
806    
807    
808    check_HAVE_SETRLSTK()  {
809        get_fortran_c_namemangling
810        cat <<EOF > genmake_tc_1.c
811    $FC_NAMEMANGLE
812    #include <sys/time.h>
813    #include <sys/resource.h>
814    #include <unistd.h>
815    void FC_NAMEMANGLE(setrlstk) ()
816    {
817        struct rlimit rls;
818        rls.rlim_cur = RLIM_INFINITY;
819        rls.rlim_max = RLIM_INFINITY;
820        setrlimit(RLIMIT_STACK, &rls);
821        return;
822    }
823    EOF
824        make genmake_tc_1.o >> genmake_warnings 2>&1
825        RET_C=$?
826        cat <<EOF > genmake_tc_2.$FS
827          program hello
828          external setrlstk
829          call setrlstk()
830          end
831    EOF
832        echo >> genmake_warnings
833        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
834        cat genmake_tc_2.$FS >> genmake_warnings
835        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
836        echo $COMM >> genmake_warnings
837        $COMM >> genmake_warnings 2>&1
838        RETVAL=$?
839        if test "x$RETVAL" = x0 ; then
840            HAVE_SETRLSTK=t
841            DEFINES="$DEFINES -DHAVE_SETRLSTK"
842        fi
843        rm -f genmake_tc*
844    }
845    
846    
847    check_HAVE_STAT()  {
848        get_fortran_c_namemangling
849        cat <<EOF > genmake_tc_1.c
850    $FC_NAMEMANGLE
851    #include <stdio.h>
852    #include <stdlib.h>
853    #include <unistd.h>
854    #include <sys/stat.h>
855    #include <sys/types.h>
856    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
857    {
858        char name[512];
859        struct stat astat;
860    
861        name[0] = 'a'; name[1] = '\0';
862        if (! stat(name, &astat))
863            *nbyte = (int)(astat.st_size);
864        else
865            *nbyte = -1;
866    }
867    EOF
868        make genmake_tc_1.o >> genmake_tc.log 2>&1
869        RET_C=$?
870        cat <<EOF > genmake_tc_2.$FS
871          program hello
872          integer nbyte
873          call tfsize(nbyte)
874          print *," HELLO WORLD", nbyte
875          end
876    EOF
877        echo >> genmake_warnings
878        echo "running: check_HAVE_STAT()" >> genmake_warnings
879        cat genmake_tc_2.$FS >> genmake_warnings
880        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
881        echo $COMM >> genmake_warnings
882        $COMM >> genmake_tc.log 2>&1
883        RETVAL=$?
884        if test "x$RETVAL" = x0 ; then
885            HAVE_STAT=t
886            DEFINES="$DEFINES -DHAVE_STAT"
887        fi
888        rm -f genmake_tc*
889    }
890    
891    
892    check_netcdf_libs()  {
893        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
894            return
895        fi
896        echo >> genmake_warnings
897        echo "running: check_netcdf_libs()" >> genmake_warnings
898        cat <<EOF > genmake_tnc.F
899          program fgennc
900    #include "netcdf.inc"
901    EOF
902        if test ! "x$MPI" = x ; then
903            echo '#include "mpif.h"' >> genmake_tnc.F
904        fi
905        cat <<EOF >> genmake_tnc.F
906          integer iret, ncid, xid
907          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
908          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
909          iret = nf_def_dim(ncid, 'X', 11, xid)
910          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
911          iret = nf_close(ncid)
912          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
913          end
914    EOF
915        echo "===  genmake_tnc.F  ===" > genmake_tnc.log
916        cat genmake_tnc.F >> genmake_tnc.log
917        echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
918        RET_CPP=f
919        COMM="$CPP $DEFINES $INCLUDES genmake_tnc.F"
920        echo "$COMM" >> genmake_tnc.log
921        $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
922        if test "x$RET_CPP" = xf ; then
923            echo "  WARNING: CPP failed to pre-process the netcdf test." \
924                >> genmake_tnc.log
925            echo "    Please check that \$INCLUDES is properly set." \
926                >> genmake_tnc.log
927        fi
928        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
929        echo "  &&  $LINK -o genmake_tnc.o $LIBS" >> genmake_tnc.log
930        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
931            &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
932        RET_COMPILE=$?
933        cat genmake_tnc.log >> genmake_warnings
934    
935        #EH3  Remove test program execution for machines that either disallow
936        #EH3  execution or cannot support it (eg. cross-compilers)
937        #EH3
938        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
939        #EH3 RETVAL=$?
940        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
941    
942        if test "x$RET_COMPILE" = x0 ; then
943            HAVE_NETCDF=t
944        else
945            # try again with "-lnetcdf" added to the libs
946            echo "try again with added '-lnetcdf'" > genmake_tnc.log
947            echo "$CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS \ " >> genmake_tnc.log
948            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
949            echo " &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
950            $CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS 2>/dev/null  \
951                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
952                &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
953            RET_COMPILE=$?
954            cat genmake_tnc.log >> genmake_warnings
955            if test "x$RET_COMPILE" = x0 ; then
956                LIBS="$LIBS -lnetcdf"
957                HAVE_NETCDF=t
958            fi
959        fi
960        rm -f genmake_tnc*
961    }
962    
963    
964    
965    ###############################################################################
966    #   Sequential part of script starts here
967    ###############################################################################
968    
969  #  Set defaults here  #  Set defaults here
970  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 288  PLATFORM= Line 973  PLATFORM=
973  LN=  LN=
974  S64=  S64=
975  KPP=  KPP=
976  FC=  #FC=
977    #CC=gcc
978    #CPP=
979  LINK=  LINK=
980  DEFINES="-DWORDLENGTH=4"  DEFINES=
981  PACKAGES=  PACKAGES=
982  ENABLE=  ENABLE=
983  DISABLE=  DISABLE=
984  MAKEFILE=  # MAKEFILE=
985  MAKEDEPEND=  # MAKEDEPEND=
986  PDEPEND=  PDEPEND=
987  DUMPSTATE=t  DUMPSTATE=t
988  PDEFAULT=  PDEFAULT=
989  OPTFILE=  OPTFILE=
990  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
991  FFLAGS=  FFLAGS=
992  FOPTIM=  FOPTIM=
993  CFLAGS=  CFLAGS=
994  KFLAGS1=  KFLAGS1=
995  KFLAGS2=  KFLAGS2=
996    #LDADD=
997  LIBS=  LIBS=
998  KPPFILES=  KPPFILES=
999  NOOPTFILES=  NOOPTFILES=
1000  NOOPTFLAGS=  NOOPTFLAGS=
1001    MPI=
1002    MPIPATH=
1003    TS=
1004    PAPIS=
1005    FOOLAD=
1006    PAPI=
1007    HPMT=
1008    GSL=
1009    HAVE_TEST_L=
1010    
1011    # DEFINES checked by test compilation or command-line
1012    HAVE_SYSTEM=
1013    HAVE_FDATE=
1014    FC_NAMEMANGLE=
1015    HAVE_CLOC=
1016    HAVE_SETRLSTK=
1017    HAVE_STAT=
1018    HAVE_NETCDF=
1019    HAVE_ETIME=
1020    IGNORE_TIME=
1021    
1022  MODS=  MODS=
1023  TOOLSDIR=  TOOLSDIR=
1024  SOURCEDIRS=  SOURCEDIRS=
1025  INCLUDEDIRS=  INCLUDEDIRS=
1026  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
1027    
1028    G2ARGS=
1029    BASH=
1030  PWD=`pwd`  PWD=`pwd`
1031  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1032  THISHOSTNAME=`hostname`  test "x$AWK" = x   &&  AWK=awk
1033    EMBED_SRC=
1034    THISHOST=`hostname`
1035  THISCWD=`pwd`  THISCWD=`pwd`
1036  THISDATE=`date`  THISDATE=`date`
1037    THISUSER=`echo $USER`
1038    THISVER=
1039  MACHINE=`uname -a`  MACHINE=`uname -a`
1040  EXECUTABLE=  EXECUTABLE=
1041  EXEHOOK=  EXEHOOK=
# Line 331  IEEE= Line 1045  IEEE=
1045  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1046      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1047  fi  fi
1048    FS=
1049    FS90=
1050    
1051  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1052  AD_OPTFILE=  AD_OPTFILE=
1053    TAF=
1054    AD_TAF_FLAGS=
1055    FTL_TAF_FLAGS=
1056    SVD_TAF_FLAGS=
1057    TAF_EXTRA=
1058    TAMC=
1059    AD_TAMC_FLAGS=
1060    FTL_TAF_FLAGS=
1061    SVD_TAMC_FLAGS=
1062    TAMC_EXTRA=
1063    
1064    
1065  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1066  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1067  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PAPI HPMT GSL MPI JAM DUMPSTATE STANDARDDIRS"
1068    
1069  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1070  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
1071  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1072  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1073  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1074    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
1075    
1076  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1077  gm_s7="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF DIFF_FLAGS AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1078  gm_s8="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1079  gm_s9=""  gm_s12="TAF_EXTRA TAMC_EXTRA"
1080    
1081  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
1082    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1083    
1084    cat <<EOF
1085    
1086    GENMAKE :
1087    
1088    A program for GENerating MAKEfiles for the MITgcm project.  For a
1089    quick list of options, use "genmake -h" or for more detail see:
1090    
1091      http://mitgcm.org/devel_HOWTO/
1092    
1093    EOF
1094    
 echo  
1095  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1096  gm_local="genmake_local"  gm_local="genmake_local"
1097  for i in . $MODS ; do  for i in . $MODS ; do
1098      if test -r $i/$gm_local ; then      if test -r $i/$gm_local ; then
1099          source $i/$gm_local          . $i/$gm_local
1100          break          break
1101      fi      fi
1102  done  done
1103  echo -n "  getting local config information:  "  printf "  getting local config information:  "
1104  if test -e $gm_local ; then  if test -f $gm_local ; then
1105      echo "using $gm_local"      echo "using $gm_local"
1106      source $gm_local      . $gm_local
1107      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
1108      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
1109  else  else
1110      echo "none found"      echo "none found"
1111  fi  fi
1112    
1113  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1114  #OPTIONS=  #OPTIONS=
1115  #n=0  #n=0
1116  #for i ; do  #for i ; do
# Line 384  fi Line 1122  fi
1122  #done  #done
1123  #parse_options  #parse_options
1124  ac_prev=  ac_prev=
1125  for ac_option ; do  for ac_option in "$@" ; do
1126    
1127        G2ARGS="$G2ARGS \"$ac_option\""
1128    
1129      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1130      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 407  for ac_option ; do Line 1147  for ac_option ; do
1147          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1148              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1149                    
1150          -adoptfile | --adoptfile | -ad | --ad)          -adoptfile | --adoptfile | -adof | --adof)
1151              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1152          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1153              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
# Line 427  for ac_option ; do Line 1167  for ac_option ; do
1167          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1168              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1169                    
1170            -bash | --bash)
1171                ac_prev=BASH ;;
1172            -bash=* | --bash=*)
1173                BASH=$ac_optarg ;;
1174            
1175            -makedepend | --makedepend | -md | --md)
1176                ac_prev=MAKEDEPEND ;;
1177            -makedepend=* | --makedepend=* | -md=* | --md=*)
1178                MAKEDEPEND=$ac_optarg ;;
1179            
1180          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
1181              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1182          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
1183              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1184                    
1185          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1186              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
1187          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
1188              PLATFORM=$ac_optarg ;;              echo
1189                usage
1190                ;;
1191                    
1192          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1193              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 462  for ac_option ; do Line 1214  for ac_option ; do
1214          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
1215              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
1216    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
1217  #           -cpp | --cpp)  #           -cpp | --cpp)
1218  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1219  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1220  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1221                        
1222            -cc | --cc)
1223                ac_prev=CC ;;
1224            -cc=* | --cc=*)
1225                CC=$ac_optarg ;;
1226            
1227          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1228              ac_prev=FC ;;              ac_prev=FC ;;
1229          -fc=* | --fc=*)          -fc=* | --fc=*)
1230              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1231                    
1232            -fs | --fs)
1233                ac_prev=FS ;;
1234            -fs=* | --fs=*)
1235                FS=$ac_optarg ;;
1236            
1237            -fs90 | --fs90)
1238                ac_prev=FS90 ;;
1239            -fs90=* | --fs90=*)
1240                FS90=$ac_optarg ;;
1241            
1242          -ieee | --ieee)          -ieee | --ieee)
1243              IEEE=true ;;              IEEE=true ;;
1244          -noieee | --noieee)          -noieee | --noieee)
1245              IEEE= ;;              IEEE= ;;
1246            
1247            -ts | --ts)
1248                TS=true ;;
1249            -papis | --papis)
1250                PAPIS=true ;;
1251            -foolad | --foolad)
1252                FOOLAD=true ;;
1253            -papi | --papi)
1254                PAPI=true ;;
1255            -hpmt | --hpmt)
1256                HPMT=true ;;
1257    
1258            -gsl | --gsl)
1259                GSL=true ;;
1260    
1261          -mpi | --mpi)          -mpi | --mpi)
1262              MPI=true ;;              MPI=true ;;
1263          -nompi | --nompi)          -mpi=* | --mpi=*)
1264              MPI= ;;              MPIPATH=$ac_optarg
1265                MPI=true ;;
1266                    
1267          -jam | --jam)  #       -jam | --jam)
1268              JAM=1 ;;  #           JAM=1 ;;
1269          -nojam | --nojam)  #       -nojam | --nojam)
1270              JAM=0 ;;  #           JAM=0 ;;
1271                    
1272          -ds | --ds)          -ds | --ds)
1273              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1274                    
1275            -taf_extra | --taf_extra)
1276                ac_prev=TAF_EXTRA ;;
1277            -taf_extra=* | --taf_extra=*)
1278                TAF_EXTRA=$ac_optarg ;;
1279    
1280            -tamc_extra | --tamc_extra)
1281                ac_prev=TAMC_EXTRA ;;
1282            -tamc_extra=* | --tamc_extra=*)
1283                TAMC_EXTRA=$ac_optarg ;;
1284            
1285            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1286                IGNORE_TIME="-DIGNORE_TIME" ;;
1287    
1288            -es | --es | -embed-source | --embed-source)
1289                EMBED_SRC=t ;;
1290    
1291          -*)          -*)
1292              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1293              usage              usage
# Line 509  for ac_option ; do Line 1302  for ac_option ; do
1302            
1303  done  done
1304    
1305    
1306  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1307      echo      echo
1308      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
# Line 521  if test -f ./.genmakerc ; then Line 1315  if test -f ./.genmakerc ; then
1315      echo      echo
1316  fi  fi
1317    
1318    #  Find the MITgcm ${ROOTDIR}
1319  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1320      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1321        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then
1322          ROOTDIR=".."          ROOTDIR=".."
1323      else      else
1324          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1325              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1326                  ROOTDIR=$d                  ROOTDIR=$d
1327                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1328                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1329                  break                  break
1330              fi              fi
# Line 546  if test ! -d ${ROOTDIR} ; then Line 1342  if test ! -d ${ROOTDIR} ; then
1342      exit 1      exit 1
1343  fi  fi
1344    
1345    #  Find the MITgcm ${THISVER}
1346    if test -f "${ROOTDIR}/doc/tag-index" ; then
1347        THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`
1348    fi
1349    
1350    if test "x$MAKEFILE" = x ; then
1351        MAKEFILE="Makefile"
1352    fi
1353    
1354  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1355  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1356      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 559  fi Line 1364  fi
1364  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
1365      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1366          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
1367          source "$OPTFILE"          . "$OPTFILE"
1368          RETVAL=$?          RETVAL=$?
1369          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1370              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1371              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1372              exit 1              exit 1
1373          fi          fi
# Line 586  fi Line 1391  fi
1391  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
1392      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1393          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1394          source "$AD_OPTFILE"          . "$AD_OPTFILE"
1395          RETVAL=$?          RETVAL=$?
1396          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1397              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1398              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1399              exit 1              exit 1
1400          fi          fi
# Line 602  if test "x${AD_OPTFILE}" != xNONE ; then Line 1407  if test "x${AD_OPTFILE}" != xNONE ; then
1407      fi      fi
1408  fi  fi
1409    
1410  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  #====================================================================
1411  #  and abort!  #  Set default values if not set by the optfile
1412    #
1413    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1414    #  either set defaults or complain and abort!
1415    if test ! "x$BASH" = x ; then
1416        # add a trailing space so that it works within the Makefile syntax (see below)
1417        BASH="$BASH "
1418    fi
1419  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1420      cat <<EOF 1>&2      cat <<EOF 1>&2
1421    
# Line 614  Error: no Fortran compiler: please speci Line 1426  Error: no Fortran compiler: please speci
1426  EOF  EOF
1427      exit 1      exit 1
1428  fi  fi
1429    if test "x$CC" = x ; then
1430        CC=cc
1431    #     cat <<EOF 1>&2
1432    # Error: no C compiler: please specify using one of the following:
1433    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1434    #   2) the "-cc=XXX" command-line option
1435    #   3) the "./genmake_local" file
1436    # EOF
1437    #     exit 1
1438    fi
1439  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1440      LINK=$FC      LINK=$FC
1441  fi  fi
1442    if test "x$MAKE" = x ; then
1443        MAKE="make"
1444    fi
1445  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1446      CPP="cpp"      CPP=cpp
1447  fi  fi
1448    #EH3 === UGLY ===
1449    #  The following is an ugly little hack to check for $CPP in /lib/ and
1450    #  it should eventually be replaced with a more general function that
1451    #  searches a combo of the user's path and a list of "usual suspects"
1452    #  to find the correct location for binaries such as $CPP.
1453    for i in " " "/lib/" ; do
1454        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1455    done
1456    #EH3 === UGLY ===
1457  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1458  RETVAL=$?  RETVAL=$?
1459  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 629  Error: C pre-processor "$CPP" failed the Line 1463  Error: C pre-processor "$CPP" failed the
1463    
1464    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1465    2) the "./genmake_local" file    2) the "./genmake_local" file
1466      3) with the CPP environment variable
1467    
1468  EOF  EOF
1469      exit 1      exit 1
1470  else  else
1471      rm -f test_cpp      rm -f test_cpp
1472  fi  fi
1473  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
1474      MAKEDEPEND=makedepend  if test "x$LN" = x ; then
1475        LN="ln -s"
1476    fi
1477    echo "test" > genmake_test_ln
1478    $LN genmake_test_ln genmake_tlink
1479    RETVAL=$?
1480    if test "x$RETVAL" != x0 ; then
1481        cat <<EOF 1>&2
1482    
1483    Error: The command "ln -s" failed -- please specify a working soft-link
1484      command in the optfile.
1485    
1486    EOF
1487        exit 1
1488    fi
1489    test -L genmake_tlink > /dev/null 2>&1
1490    RETVAL=$?
1491    if test "x$RETVAL" = x0 ; then
1492        HAVE_TEST_L=t
1493    fi
1494    rm -f genmake_test_ln genmake_tlink
1495    
1496    #  Check for broken *.F/*.f handling and fix if possible
1497    check_for_broken_Ff
1498    
1499    if test ! "x$MPI" = x ; then
1500          echo "  Turning on MPI cpp macros"
1501          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1502    fi
1503    
1504    if test ! "x$TS" = x ; then
1505          echo "  Turning on timing per timestep"
1506          if test ! "x$FOOLAD" = x ; then
1507                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1508          else
1509                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1510          fi
1511    fi
1512    if test ! "x$PAPIS" = x ; then
1513          echo "  Turning on PAPI flop summary per timestep"
1514          echo "  Please make sure PAPIINC, PAPILIB are defined"
1515          if test ! "x$FOOLAD" = x ; then
1516                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1517          else
1518                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1519          fi
1520          INCLUDES="$INCLUDES $PAPIINC"
1521          LIBS="$LIBS $PAPILIB"
1522    fi
1523    if test ! "x$PAPI" = x ; then
1524          if test ! "x$PAPIS" = x ; then
1525              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1526              echo "  Sticking with PAPI flop summary per timestep!"
1527          else
1528              echo "  Turning on performance analysis with PAPI"
1529              echo "  Please make sure PAPIINC, PAPILIB are defined"
1530              DEFINES="$DEFINES -DUSE_PAPI"
1531              INCLUDES="$INCLUDES $PAPIINC"
1532              LIBS="$LIBS $PAPILIB"
1533          fi
1534    fi
1535    if test ! "x$HPMT" = x ; then
1536          if test ! "x$PAPI" = x ; then
1537              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1538              echo "  Sticking with PAPI!"
1539          else
1540              echo "  Turning on performance analysis with the HPM Toolkit"
1541              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1542              DEFINES="$DEFINES -DUSE_LIBHPM"
1543              INCLUDES="$INCLUDES $HPMTINC"
1544              LIBS="$LIBS $HPMTLIB"
1545          fi
1546    fi
1547    if test ! "x$GSL" = x ; then
1548          echo "  Turning on use of GSL to control floating point calculations"
1549          echo "  Please make sure GSLINC, GSLLIB are defined"
1550          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1551          INCLUDES="$INCLUDES $GSLINC"
1552          LIBS="$LIBS $GSLLIB"
1553    fi
1554    
1555    printf "\n===  Checking system libraries  ===\n"
1556    printf "  Do we have the system() command using $FC...  "
1557    cat > genmake_tcomp.$FS <<EOF
1558          program hello
1559          call system('echo hi')
1560          end
1561    EOF
1562    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1563    RETVAL=$?
1564    if test "x$RETVAL" = x0 ; then
1565        HAVE_SYSTEM=t
1566        DEFINES="$DEFINES -DHAVE_SYSTEM"
1567        echo "yes"
1568    else
1569        HAVE_SYSTEM=
1570        echo "no"
1571    fi
1572    rm -f genmake_tcomp*
1573    
1574    printf "  Do we have the fdate() command using $FC...  "
1575    cat > genmake_tcomp.$FS <<EOF
1576          program hello
1577          CHARACTER*(128) string
1578          string = ' '
1579          call fdate( string )
1580          print *, string
1581          end
1582    EOF
1583    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1584    RETVAL=$?
1585    if test "x$RETVAL" = x0 ; then
1586        HAVE_FDATE=t
1587        DEFINES="$DEFINES -DHAVE_FDATE"
1588        echo "yes"
1589    else
1590        HAVE_FDATE=
1591        echo "no"
1592    fi
1593    rm -f genmake_tcomp*
1594    
1595    printf "  Do we have the etime() command using $FC...  "
1596    cat > genmake_tcomp.$FS <<EOF
1597          program hello
1598          REAL*4 ACTUAL, TARRAY(2)
1599          EXTERNAL ETIME
1600          REAL*4 ETIME
1601          actual = etime( tarray )
1602          print *, tarray
1603          end
1604    EOF
1605    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1606    RETVAL=$?
1607    if test "x$RETVAL" = x0 ; then
1608        HAVE_ETIME=t
1609        DEFINES="$DEFINES -DHAVE_ETIME"
1610        echo "yes"
1611    else
1612        HAVE_ETIME=
1613        echo "no"
1614    fi
1615    rm -f genmake_tcomp*
1616    
1617    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1618    check_HAVE_CLOC
1619    if test "x$HAVE_CLOC" != x ; then
1620        echo "yes"
1621    else
1622        echo "no"
1623        if test "x$EMBED_SRC" = xt ; then
1624            echo "    WARNING: you requested file embedding but it has"
1625            echo "      been disabled since C code cannot be called"
1626            EMBED_SRC=
1627        fi
1628    fi
1629    rm -f genmake_t*
1630    
1631    printf "  Can we unlimit the stack size using $FC...  "
1632    check_HAVE_SETRLSTK
1633    if test "x$HAVE_SETRLSTK" != x ; then
1634        echo "yes"
1635    else
1636        echo "no"
1637    fi
1638    rm -f genmake_t*
1639    
1640    printf "  Can we register a signal handler using $FC...  "
1641    check_HAVE_SIGREG
1642    if test "x$HAVE_SIGREG" != x ; then
1643        echo "yes"
1644    else
1645        echo "no"
1646    fi
1647    rm -f genmake_t*
1648    
1649    printf "  Can we use stat() through C calls...  "
1650    check_HAVE_STAT
1651    if test "x$HAVE_STAT" != x ; then
1652        echo "yes"
1653    else
1654        echo "no"
1655    fi
1656    rm -f genmake_t*
1657    
1658    printf "  Can we create NetCDF-enabled binaries...  "
1659    check_netcdf_libs
1660    if test "x$HAVE_NETCDF" != x ; then
1661        echo "yes"
1662    else
1663        echo "no"
1664  fi  fi
1665    DEFINES="$DEFINES $IGNORE_TIME"
1666    
1667    if test "x$EMBED_SRC" = xt ; then
1668        build_embed_encode
1669    fi
1670    if test "x$EMBED_SRC" = xt ; then
1671        ENABLE="$ENABLE embed_files"
1672    fi
1673    
1674    
1675  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1676  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1677  for d in $MODS ; do  for d in $MODS ; do
1678      if test ! -d $d ; then      if test ! -d $d ; then
1679          echo          echo
1680          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1681          exit 1          exit 1
1682      else      else
1683          echo -n " $d"          printf " $d"
1684          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1685          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1686      fi      fi
1687  done  done
1688  echo  echo
1689    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1690  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1691      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1692  fi  fi
1693    
1694  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1695      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1696        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1697          EXEDIR=../exe          EXEDIR=../exe
1698      else      else
1699          EXEDIR=.          EXEDIR=.
# Line 677  if test "x${TOOLSDIR}" = x ; then Line 1708  if test "x${TOOLSDIR}" = x ; then
1708      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1709  fi  fi
1710  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1711      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1712      exit 1      exit 1
1713  fi  fi
1714  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1715      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1716        RETVAL=$?
1717        if test "x${RETVAL}" = x0 ; then
1718            S64='$(TOOLSDIR)/set64bitConst.sh'
1719        else
1720            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1721            RETVAL=$?
1722            if test "x${RETVAL}" = x0 ; then
1723                S64='$(TOOLSDIR)/set64bitConst.csh'
1724            else
1725                cat <<EOF
1726    
1727    ERROR: neither of the two default scripts:
1728    
1729        ${TOOLSDIR}/set64bitConst.sh
1730        ${TOOLSDIR}/set64bitConst.csh
1731    
1732      are working so please check paths or specify (with \$S64) a
1733      working version of this script.
1734    
1735    EOF
1736                exit 1
1737            fi
1738        fi
1739  fi  fi
1740    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1741    
1742  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1743    
# Line 691  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 1746  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1746  #  they appear as regular source code  #  they appear as regular source code
1747  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1748      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1749      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
1750      RETVAL=$?      RETVAL=$?
1751      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1752          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1753      else      else
1754          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1755          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1756          exit 1          exit 1
1757      fi      fi
1758  fi  fi
1759    
1760    #same for exch2
1761    if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then
1762        echo "  Making source files in exch2 from  templates"
1763        ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1
1764        RETVAL=$?
1765        if test "x${RETVAL}" = x0 ; then
1766            rm -f make_exch2.errors
1767        else
1768            echo "Error: problem encountered while building source files in exch2:"
1769            cat make_exch2.errors 1>&2
1770            exit 1
1771        fi
1772    fi
1773    
1774  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1775  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1776      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 721  echo "  getting package dependency info Line 1790  echo "  getting package dependency info
1790  #  Strip the comments and then convert the dependency file into  #  Strip the comments and then convert the dependency file into
1791  #  two arrays: PNAME, DNAME  #  two arrays: PNAME, DNAME
1792  cat $PDEPEND | sed -e 's/#.*$//g' \  cat $PDEPEND | sed -e 's/#.*$//g' \
1793      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
1794      > ./.pd_tmp      > ./.pd_tmp
1795  RETVAL=$?  RETVAL=$?
1796  if test ! "x${RETVAL}" = x0 ; then  if test ! "x${RETVAL}" = x0 ; then
1797      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
1798      exit 1      exit 1
1799  fi  fi
1800  source ./.pd_tmp  . ./.pd_tmp
1801  rm -f ./.pd_tmp  rm -f ./.pd_tmp
1802    
1803  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1804  #  file should eventually be added so that, for convenience, one can  #  file should eventually be added so that, for convenience, one can
1805  #  specify groups of packages using names like "ocean" and "atmosphere".  #  specify groups of packages using names like "ocean" and "atmosphere".
1806  echo  -n "  checking default package list:  "  echo "  checking default package list:  "
1807  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1808      for i in "." $MODS ; do      for i in "." $MODS ; do
1809          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
# Line 747  if test "x${PDEFAULT}" = x ; then Line 1816  if test "x${PDEFAULT}" = x ; then
1816      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1817  fi  fi
1818  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1819      echo "default packages file disabled"      echo "    default packages file disabled"
1820  else  else
1821      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1822          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1823      else      else
1824          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1825          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1826          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1827          RETVAL=$?          RETVAL=$?
1828          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1829              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1830              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1831              exit 1              exit 1
1832          fi          fi
# Line 766  else Line 1834  else
1834              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1835          done          done
1836          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1837          expand_pkg_groups          RET=1
1838            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1839          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1840      fi      fi
1841  fi  fi
1842    
1843  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1844    for i in $PACKAGES ; do
1845        echo $i >> ./.tmp_pack
1846    done
1847    for i in `grep  "-" ./.tmp_pack` ; do
1848        j=`echo $i | sed 's/[-]//'`
1849        DISABLE="$DISABLE $j"
1850    done
1851  pack=  pack=
1852  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1853      addit="t"      addit="t"
# Line 788  PACKAGES="$pack" Line 1864  PACKAGES="$pack"
1864  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1865  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1866  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1867    # Test if each explicitly referenced package exists
1868  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1869      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1870        if test ! -d "$ROOTDIR/pkg/$j" ; then
1871          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1872          exit 1          exit 1
1873      fi      fi
1874      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1875  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1876  PACKAGES=  PACKAGES=
1877  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1878      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1879  done  done
1880    rm -f ./.tmp_pack
1881  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1882    
1883    #  Check availability of NetCDF and then either build the MNC template
1884    #  files or delete mnc from the list of available packages.
1885    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1886    RETVAL=$?
1887    if test "x$RETVAL" = x0 ; then
1888        if test "x$HAVE_NETCDF" != xt ; then
1889            cat <<EOF
1890    
1891    *********************************************************************
1892    WARNING: the "mnc" package was enabled but tests failed to compile
1893      NetCDF applications.  Please check that:
1894    
1895      1) NetCDF is correctly installed for this compiler and
1896      2) the LIBS variable (within the "optfile") specifies the correct
1897           NetCDF library to link against.
1898    
1899      Due to this failure, the "mnc" package is now DISABLED.
1900    *********************************************************************
1901    
1902    EOF
1903            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
1904            DISABLE="$DISABLE mnc"
1905        else
1906            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
1907            RETVAL=$?
1908            if test "x${RETVAL}" = x0 ; then
1909                rm -f make_mnc.errors
1910            else
1911                echo "Error: problem encountered while building source files in pkg/mnc:"
1912                cat make_mnc.errors 1>&2
1913                exit 1
1914            fi
1915        fi
1916    fi
1917    
1918  echo "  applying package dependency rules"  echo "  applying package dependency rules"
1919  ck=  ck=
1920  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
# Line 867  while test "x$ck" != xtt ; do Line 1979  while test "x$ck" != xtt ; do
1979              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
1980              exit 1              exit 1
1981          fi          fi
1982          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
1983            #i=$(( $i + 1 ))
1984      done      done
1985      ck=$ck"t"      ck=$ck"t"
1986  done  done
# Line 886  for i in $PACKAGES ; do Line 1999  for i in $PACKAGES ; do
1999      fi      fi
2000  done  done
2001    
 #  This is compatible with the old genmake.  The "DISABLE_*" flags  
 #  need to be replaced by the "ALLOW_*" flags set below.  
 #  
 # echo -n "  Setting package-specific CPP flags:  "  
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
2002  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2003  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
 cat <<EOF >$PACKAGES_DOT_H".tmp"  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
   
 C  Packages disabled by genmake:  
 EOF  
2004  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2005  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2006  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2007  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2008  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2009  all_pack=  all_pack=
2010    DISABLED_PACKAGES=
2011  for n in $names ; do  for n in $names ; do
2012      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2013          has_pack="f"          has_pack="f"
# Line 935  for n in $names ; do Line 2018  for n in $names ; do
2018              fi              fi
2019          done          done
2020          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2021              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2022              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
 #           DEFINES="$DEFINES -U$undef"  
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
2023          fi          fi
2024      fi      fi
2025  done  done
2026  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2027  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2028      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2029      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2030  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2031    
2032  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2033      case $i in      case $i in
2034          aim_v23)          aim_v23)
2035              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2036              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
2037              ;;              ;;
2038      esac      esac
2039  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2040    
2041  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
2042    
2043  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
2044  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2045  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2046      STANDARDDIRS="eesupp model"      STANDARDDIRS="eesupp model"
2047  fi  fi
2048  for d in $STANDARDDIRS ; do  if test "x$STANDARDDIRS" != x ; then
2049      adr="$ROOTDIR/$d/src"      for d in $STANDARDDIRS ; do
2050      if test ! -d $adr ; then          adr="$ROOTDIR/$d/src"
2051          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
2052          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2053          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2054      else              exit 1
2055          SOURCEDIRS="$SOURCEDIRS $adr"          else
2056      fi              SOURCEDIRS="$SOURCEDIRS $adr"
2057      adr="$ROOTDIR/$d/inc"          fi
2058      if test ! -d $adr ; then          adr="$ROOTDIR/$d/inc"
2059          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
2060          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2061          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2062      else              exit 1
2063          INCLUDEDIRS="$INCLUDEDIRS $adr"          else
2064      fi              INCLUDEDIRS="$INCLUDEDIRS $adr"
2065  done          fi
2066        done
2067    fi
2068    
2069  echo " Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2070  echo " of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
2071  CPP_OPTIONS=  CPP_OPTIONS=
2072    CPP_EEOPTIONS=
2073  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
2074    names=`ls -1 "$ROOTDIR/pkg"`
2075  for i in $spaths ; do  for i in $spaths ; do
2076      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
2077      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
2078          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2079          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2080          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2081            for n in $names ; do
2082                test_for_package_in_cpp_options $CPP_OPTIONS $n
2083            done
2084        fi
2085        try="$i/CPP_EEOPTIONS.h"
2086        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2087            echo "    found CPP_EEOPTIONS=\"$try\""
2088            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2089    #**** not yet enabled ****
2090    #        test_for_mpi_in_cpp_eeoptions $try
2091    #**** not yet enabled ****
2092            CPP_EEOPTIONS="$try"
2093      fi      fi
2094  done  done
2095  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
2096      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2097      exit 1      exit 1
2098  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
2099    
2100  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2101  #  compiler.  #  compiler.
# Line 1048  if test -f ./ad_files ; then Line 2103  if test -f ./ad_files ; then
2103      rm -f ./ad_files      rm -f ./ad_files
2104  fi  fi
2105  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2106  for i in $SOURCEDIRS . ; do  for i in $SOURCEDIRS ; do
2107      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2108      for j in $list_files ; do      for j in $list_files ; do
2109          cat $i/$j >> ad_files          cat $i/$j >> ad_files
2110      done      done
2111  done  done
2112  cat <<EOF > adjoint_sed  if test ! "x"$FS = "x.f" ; then
2113        cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f
2114   sed 's/call adopen(/call adopen ( mythid,\      mv -f ad_files_f ad_files
2115       \&           /g  fi
      s/call adclose(/call adclose( mythid,\  
      \&           /g  
      s/call adread(/call adread ( mythid,\  
      \&           /g  
      s/call adwrite(/call adwrite( mythid,\  
      \&           /g' < ad_code_ad.f  
   
 EOF  
 chmod +x adjoint_sed  
   
2116    
2117  echo  echo
2118  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2119  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2120  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2121      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2122          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2123      fi      fi
2124  done  done
2125    
2126    if test ! "x$DIVA" = x ; then
2127        echo "  Creating the pseudo-MPI include directory"
2128        INCLUDES="-I./mpi_headers $INCLUDES"
2129        rm -rf ./mpi_headers
2130        mkdir -p ./mpi_headers
2131    
2132        if test "x$MPIINCLUDEDIR" = x ; then
2133            if test "x$MPIHOME" = x ; then
2134                MPIHOME='/usr'
2135            fi
2136            MPIINCLUDEDIR='$MPIHOME/include'
2137        fi
2138        
2139        if test -r $MPIINCLUDEDIR/mpif.h ; then
2140            for i in $MPI_HEADER_FILES; do
2141                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2142            done
2143    
2144            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2145        else
2146            echo " We cannot create a copy of mpif.h!"
2147            exit -1
2148        fi
2149    fi
2150    
2151  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2152  rm -rf .links.tmp  rm -rf .links.tmp
2153  mkdir .links.tmp  mkdir .links.tmp
2154  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2155  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2156  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
2157  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
2158  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
2159  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
2160    printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
2161  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2162  for d in $alldirs ; do  for d in $alldirs ; do
2163      deplist=      deplist=
2164      sfiles=`( cd $d; echo *.[h,c,F] )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2165      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2166      for sf in $sfiles ; do      for sf in $sfiles ; do
2167          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2168              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2169                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  ignore_f=f
2170                  touch .links.tmp/$sf                  case $d/$sf in
2171                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2172                  case $extn in                          ignore_f=t
                     F)  
                         echo    " \\"  >> srclist.inc  
                         echo -n " $sf" >> srclist.inc  
2173                          ;;                          ;;
2174                      F90)                    ./AD_CONFIG.h)
2175                          echo    " \\"  >> f90srclist.inc                          ignore_f=t
                         echo -n " $sf" >> f90srclist.inc  
2176                          ;;                          ;;
2177                      c)                    ./FC_NAMEMANGLE.h)
2178                          echo    " \\"  >> csrclist.inc                          ignore_f=t
                         echo -n " $sf" >> csrclist.inc  
2179                          ;;                          ;;
2180                      h)                    ./BUILD_INFO.h)
2181                          echo    " \\"  >> hlist.inc                          ignore_f=t
                         echo -n " $sf" >> hlist.inc  
2182                          ;;                          ;;
2183                  esac                    ./EMBEDDED_FILES.h)
2184                            ignore_f=t
2185                            ;;
2186                      *)
2187                            #  For the local directory *ONLY*,
2188                            #  ignore all soft-links
2189                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2190                                ignore_f=t
2191                            else
2192                                touch .links.tmp/$sf
2193                                deplist="$deplist $sf"
2194                            fi
2195                            ;;
2196                    esac
2197                    if test "x$ignore_f" = xf ; then
2198                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2199                        case $extn in
2200                            F)
2201                                echo    " \\"  >> srclist.inc
2202                                printf " $sf" >> srclist.inc
2203                                ;;
2204                            F90)
2205                                echo    " \\"  >> f90srclist.inc
2206                                printf " $sf" >> f90srclist.inc
2207                                ;;
2208                            c)
2209                                echo    " \\"  >> csrclist.inc
2210                                printf " $sf" >> csrclist.inc
2211                                ;;
2212                            h)
2213                                echo    " \\"  >> hlist.inc
2214                                printf " $sf" >> hlist.inc
2215                                ;;
2216                            flow)
2217                                echo    " \\"  >> ad_flow_files.inc
2218                                printf " $sf" >> ad_flow_files.inc
2219                                ;;
2220                        esac
2221                    fi
2222              fi              fi
2223          fi          fi
2224      done      done
# Line 1133  echo "" >> srclist.inc Line 2234  echo "" >> srclist.inc
2234  echo "" >> csrclist.inc  echo "" >> csrclist.inc
2235  echo "" >> f90srclist.inc  echo "" >> f90srclist.inc
2236  echo "" >> hlist.inc  echo "" >> hlist.inc
2237    echo "" >> ad_flow_files.inc
2238    
2239  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2240      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
2241  fi  fi
2242  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1143  echo "#    $MACHINE" >> $MAKEFILE Line 2245  echo "#    $MACHINE" >> $MAKEFILE
2245  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2246  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2247  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2248  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
2249  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2250  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2251    
2252    EXE_AD=$EXECUTABLE"_ad"
2253    EXE_FTL=$EXECUTABLE"_ftl"
2254    EXE_SVD=$EXECUTABLE"_svd"
2255    
2256  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2257    #
2258    # OPTFILE="$OPTFILE"
2259  #  #
2260  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2261  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 1176  TOOLSDIR    = ${TOOLSDIR} Line 2285  TOOLSDIR    = ${TOOLSDIR}
2285    
2286  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2287  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
2288    EXE_AD      = ${EXE_AD}
2289    EXE_FTL     = ${EXE_FTL}
2290    EXE_SVD     = ${EXE_SVD}
2291    
2292    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2293    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2294    
2295    # These files are created by Makefile
2296    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2297  EOF  EOF
2298    
2299  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2300        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2301    else
2302        echo "EMBEDDED_FILES = " >>$MAKEFILE
2303    fi
2304    
2305    #  Note: figure out some way to add Hyades JAM libraries here
2306  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2307  # Unix ln (link)  # Unix ln (link)
2308  LN = ${LN}  LN = ${LN}
# Line 1194  KPP = ${KPP} Line 2316  KPP = ${KPP}
2316  FC = ${FC}  FC = ${FC}
2317  # Fortran compiler  # Fortran compiler
2318  F90C = ${F90C}  F90C = ${F90C}
2319    # C compiler
2320    CC = ${CC}
2321  # Link editor  # Link editor
2322  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2323    
2324  # Defines for CPP  # Defines for CPP
2325  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1216  CFLAGS = ${CFLAGS} Line 2340  CFLAGS = ${CFLAGS}
2340  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2341  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2342  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2343  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2344  # Name of the Mekfile  # Name of the Mekfile
2345  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2346    
2347  EOF  EOF
2348    
2349  cat srclist.inc    >> $MAKEFILE  cat srclist.inc       >> $MAKEFILE
2350  cat csrclist.inc   >> $MAKEFILE  cat csrclist.inc      >> $MAKEFILE
2351  cat f90srclist.inc >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
2352  cat hlist.inc      >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
2353  echo               >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
2354  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo >> $MAKEFILE
2355  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
2356    echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE
2357  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
2358    echo >> $MAKEFILE
2359    echo '.SUFFIXES:' >> $MAKEFILE
2360    echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE
2361  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
2362    rm -f ad_flow_files.inc
2363    
2364  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2365    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
2366  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2367  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2368            @echo Creating \$@ ...
2369          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2370  depend:  depend:
2371          @make links          @make links
2372          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
2373          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2374            -rm -f makedepend.out
2375    
2376    lib: libmitgcmuv.a
2377    
2378  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  libmitgcmuv.a: \$(OBJFILES)
2379            ar rcv libmitgcmuv.a \$(OBJFILES)
2380    
2381    links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
2382    
2383  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
2384    
# Line 1255  output.txt: \$(EXECUTABLE) Line 2387  output.txt: \$(EXECUTABLE)
2387          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2388    
2389  clean:  clean:
2390          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2391  Clean:  Clean:
2392          @make clean          @make clean
2393          @make cleanlinks          @make cleanlinks
2394          -rm -f Makefile.bak genmake_state genmake_optfile make.log          -rm -f \$(SPECIAL_FILES)
2395            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
2396  CLEAN:  CLEAN:
2397          @make Clean          @make Clean
2398          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2399          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2400          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2401          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) output.txt STD*
2402    
2403    #eh3 Makefile: makefile
2404  makefile:  makefile:
2405          ${0} $@          $THIS_SCRIPT $G2ARGS
2406  cleanlinks:  cleanlinks:
2407          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2408    
2409  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are create by make
2410  .F.f:  ${PACKAGES_DOT_H}:
2411            @echo Creating \$@ ...
2412            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2413    AD_CONFIG.h:
2414            @echo Creating \$@ ...
2415            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2416    FC_NAMEMANGLE.h:
2417            @echo Creating \$@ ...
2418            echo "$FC_NAMEMANGLE" > \$@
2419    
2420    BUILD_INFO.h:
2421            @echo Creating \$@ ...
2422    EOF
2423    
2424    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2425    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2426    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2427    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2428    
2429    if test "x$EMBED_SRC" = xt ; then
2430        cat >>$MAKEFILE <<EOF
2431    
2432    decode_files.o : EMBEDDED_FILES.h
2433    
2434    ##  \$(F77FILES)
2435    all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2436            @echo Creating \$@ ...
2437            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2438            -rm -f all_fF.tar.gz
2439            -gzip all_fF.tar
2440    
2441    EMBEDDED_FILES.h : all_fF.tar.gz
2442            @echo Creating \$@ ...
2443            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2444    
2445    EOF
2446    fi
2447    
2448    cat >>$MAKEFILE <<EOF
2449    
2450    # The normal chain of rules is (  .F - .$FS - .o  )
2451    
2452    ## This nullifies any default implicit rules concerning these two file types:
2453    ## %.o : %.F
2454    
2455    .F.$FS:
2456          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2457  .f.o:  .$FS.o:
2458          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2459  .F90.f90:  .F90.$FS90:
2460          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2461  .f90.o:  .$FS90.o:
2462          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2463  .c.o:  .c.o:
2464          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2465    
2466  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2467  .F.p:  .F.p:
2468          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2469  .p.f:  .p.$FS:
2470          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2471    
2472  #=========================================  #=========================================
# Line 1296  cleanlinks: Line 2475  cleanlinks:
2475  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2476  TAF            = ${TAF}  TAF            = ${TAF}
2477    
2478    TAF_EXTRA      = ${TAF_EXTRA}
2479    TAMC_EXTRA     = ${TAMC_EXTRA}
2480    
2481  EOF  EOF
2482    
2483  ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"  ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 1311  done Line 2493  done
2493    
2494  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2495  echo >> $MAKEFILE  echo >> $MAKEFILE
2496  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2497  AD_FILES=`cat ad_files`  AD_FILES=`cat ad_files`
2498  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2499      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2500      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2501  done  done
2502  echo >> $MAKEFILE  echo >> $MAKEFILE
2503    rm -f ad_files
2504    
2505  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2506    
2507  # AD_FILES_SMALLF = \$(AD_FILES:.F=.f)  # ... AD ...
2508    adall: ad_taf
2509  EXE_AD_TAMC    = ${EXECUTABLE}_ad_tamc  adtaf: ad_taf_output.$FS
2510  \$(EXE_AD_TAMC): \$(OBJFILES)  adtamc: ad_tamc_output.$FS
2511    
2512    ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2513            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2514            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2515            -rm -f ad_config.template
2516            @make \$(F77FILES)
2517            @make \$(AD_FLOW_FILES)
2518            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS
2519    
2520    ad_taf_output.$FS: ad_input_code.$FS
2521            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2522            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2523    
2524    adtafonly:
2525            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2526            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2527    
2528    ad_taf: ad_taf_output.o \$(OBJFILES)
2529            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2530    
2531    ad_tamc_output.$FS: ad_input_code.$FS
2532            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2533            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2534    
2535  EXE_AD_TAF     = ${EXECUTABLE}_ad_taf  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2536  \$(EXE_AD_TAF): \$(OBJFILES)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
         cat \$(AD_FILES) >! ad_input_code.f  
         \$(TAF) \$(AD_TAF_FLAGS) ad_input_code.f  
         ./adjoint_sed >! ad_output_code.f  
         @make ad_output_code.o  
         \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_output_code.o \$(LIBS)  
2537    
2538  EXE_FTL_TAMC   = ${EXECUTABLE}_ftl_tamc  adonlyfwd:
2539  EXE_FTL_TAF    = ${EXECUTABLE}_ftl_taf          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2540    
2541    adtrick:
2542            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2543    
2544  EXE_SVD_TAF    = ${EXECUTABLE}_ftl_taf  # ... FTL ...
2545  EXE_BOTH_TAF   = ${EXECUTABLE}_ftl_taf  ftlall: ftl_taf
2546    ftltaf: ftl_taf_output.$FS
2547    ftltamc: ftl_tamc_output.$FS
2548    
2549    ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2550            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2551            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2552            -rm -f ftl_config.template
2553            @make \$(F77FILES)
2554            @make \$(AD_FLOW_FILES)
2555            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2556    
2557    ftl_taf_output.$FS: ftl_input_code.$FS
2558            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2559            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2560    
2561    ftltafonly:
2562            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2563            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2564    
2565    ftl_taf: ftl_taf_output.o \$(OBJFILES)
2566            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2567    
2568    ftl_tamc_output.$FS: ftl_input_code.$FS
2569            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2570            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2571    
2572    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2573            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2574    
2575    
2576    # ... SVD ...
2577    svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2578            @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2579            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2580    svdall: svd_touch svd_taf
2581    
2582    svd_taf: \$(OBJFILES)
2583            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2584    
2585            @echo "--->>> Only COMPILE svd code! <<<---"
2586            @echo "--->>> Assumes you previously <<<---"
2587            @echo "--->>> did make svdtaf        <<<---"
2588    
2589    svd_touch:
2590            @echo "--->>> Only COMPILE svd code! <<<---"
2591            @echo "--->>> Assumes you previously <<<---"
2592            @echo "--->>> did make svdtaf        <<<---"
2593            touch ad_taf_output.$FS ftl_taf_output.$FS
2594            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2595            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2596            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2597            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2598            -rm -f ftl_config.template
2599    
2600  #=========================================  #=========================================
2601    
# Line 1355  for i in $KPPFILES ; do Line 2612  for i in $KPPFILES ; do
2612      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2613          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2614      fi      fi
2615      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
2616  done  done
2617    
2618  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1365  for i in $NOOPTFILES ; do Line 2622  for i in $NOOPTFILES ; do
2622      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2623          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2624      fi      fi
2625      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
2626      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
2627  done  done
2628    
# Line 1378  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 2635  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
2635    
2636  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
2637    
2638    # Create special header files
2639    $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
2640    if test ! -f $PACKAGES_DOT_H ; then
2641        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2642    else
2643        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
2644        RETVAL=$?
2645        if test "x$RETVAL" = x0 ; then
2646            rm -f $PACKAGES_DOT_H".tmp"
2647        else
2648            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
2649            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2650        fi
2651    fi
2652    if test ! -f AD_CONFIG.h ; then
2653        $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
2654    fi
2655    
2656    
2657  #  Write the "state" for future records  #  Write the "state" for future records
2658  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
2659      echo -n "" > genmake_state      printf "" > genmake_state
2660      for i in $gm_state ; do      for i in $gm_state ; do
2661          t1="t2=\$$i"          t1="t2=\$$i"
2662          eval $t1          eval $t1

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