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revision 1.138 by edhill, Sun Dec 4 13:57:08 2005 UTC revision 1.276 by jmc, Thu Jan 7 20:21:42 2016 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -oad | --oad
23              Generate a Makefile for an OpenAD built
24    
25        -nocat4ad | -dog4ad | -ncad | -dad
26              do not concatenate (cat) source code sent to TAF
27              resulting in compilation of multiple files
28    
29        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
30          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
31              Use "NAME" as the adoptfile.  By default, the file at
32              "tools/adjoint_options/adjoint_oad" (for OpenAD built) or
33              "tools/adjoint_options/adjoint_default" will be used.
34    
35        -nooptfile | --nooptfile
36          -optfile NAME | --optfile NAME | -of NAME | --of NAME
37          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
38              Use "NAME" as the optfile.  By default, an attempt will be
39              made to find an appropriate "standard" optfile in the
40              tools/build_options/ directory.
41    
42        -pdepend NAME | --pdepend NAME
43          -pdepend=NAME | --pdepend=NAME
44              Get package dependency information from "NAME".
45    
46        -pgroups NAME | --pgroups NAME
47          -pgroups=NAME | --pgroups=NAME
48              Get the package groups information from "NAME".
49    
50        -bash NAME
51              Explicitly specify the Bourne or BASH shell to use
52    
53        -make NAME | -m NAME
54          --make=NAME | -m=NAME
55              Use "NAME" for the MAKE program. The default is "make" but
56              many platforms, "gmake" is the preferred choice.
57    
58        -makefile NAME | -mf NAME
59          --makefile=NAME | -mf=NAME
60              Call the makefile "NAME".  The default is "Makefile".
61    
62        -makedepend NAME | -md NAME
63          --makedepend=NAME | -md=NAME
64              Use "NAME" for the MAKEDEPEND program.
65    
66        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
67          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
68              Specify the location of the MITgcm ROOTDIR as "NAME".
69              By default, genamke will try to find the location by
70              looking in parent directories (up to the 5th parent).
71    
72        -mods NAME | --mods NAME | -mo NAME | --mo NAME
73          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
74              Here, "NAME" specifies a list of directories that are
75              used for additional source code.  Files found in the
76              "mods list" are given preference over files of the same
77              name found elsewhere.
78    
79        -disable NAME | --disable NAME
80          -disable=NAME | --disable=NAME
81              Here "NAME" specifies a list of packages that we don't
82              want to use.  If this violates package dependencies,
83              genamke will exit with an error message.
84    
85        -enable NAME | --enable NAME
86          -enable=NAME | --enable=NAME
87              Here "NAME" specifies a list of packages that we wish
88              to specifically enable.  If this violates package
89              dependencies, genamke will exit with an error message.
90    
91        -standarddirs NAME | --standarddirs NAME
92          -standarddirs=NAME | --standarddirs=NAME
93              Here, "NAME" specifies a list of directories to be
94              used as the "standard" code.
95    
96        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
97          -fc=NAME | --fc=NAME
98              Use "NAME" as the fortran compiler.  By default, genmake
99              will search for a working compiler by trying a list of
100              "usual suspects" such as g77, f77, etc.
101    
102        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
103              Use "NAME" as the C compiler.  By default, genmake
104              will search for a working compiler by trying a list of
105              "usual suspects" such as gcc, c89, cc, etc.
106    
107        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
108              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
109              *only* works if CPP_EEOPTIONS.h allows this.
110    
111        -ignoretime | -ignore_time | --ignoretime | --ignore_time
112              Ignore all the "wall clock" routines entirely.  This will
113              not in any way hurt the model results -- it simply means
114              that the code that checks how long the model spends in
115              various routines will give junk values.
116    
117        -ts | --ts
118              Produce timing information per timestep
119        -papis | --papis
120              Produce summary MFlop/s (and IPC) with PAPI per timestep
121        -pcls | --pcls
122              Produce summary MFlop/s etc. with PCL per timestep
123        -foolad | --foolad
124              Fool the AD code generator
125        -papi | --papi
126              Performance analysis with PAPI
127        -pcl | --pcl
128              Performance analysis with PCL
129        -hpmt | --hpmt
130              Performance analysis with the HPM Toolkit
131    
132        -ieee | --ieee
133              use IEEE numerics.  Note that this option *only* works
134              if it is supported by the OPTFILE that is being used.
135        -devel | --devel
136              Add additional warning and debugging flags for development
137              (if supported by the OPTFILE); also switch to IEEE numerics.
138        -gsl | --gsl
139              Use GSL to control floating point rounding and precision
140    
141        -mpi | --mpi
142              Include MPI header files and link to MPI libraries
143        -mpi=PATH | --mpi=PATH
144              Include MPI header files and link to MPI libraries using MPI_ROOT
145              set to PATH. i.e. Include files from \$PATH/include, link to libraries
146              from \$PATH/lib and use binaries from \$PATH/bin.
147    
148        -omp | --omp
149              Activate OpenMP code + use Compiler option OMPFLAG
150        -omp=OMPFLAG | --omp=OMPFLAG
151              Activate OpenMP code + use Compiler option OMPFLAG
152    
153        -es | --es | -embed-source | --embed-source
154              Embed a tarball containing the full source code
155              (including the Makefile, etc.) used to build the
156              executable [off by default]
157    
158        -ds | --ds
159              Report genmake internal variables status (DUMPSTATE)
160              to file "genmake_state" (for debug purpose)
161    
162      While it is most often a single word, the "NAME" variables specified
163      above can in many cases be a space-delimited string such as:
164    
165        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
166        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
167        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
168    
169      which, depending upon your shell, may need to be single-quoted.
170    
171      For more detailed genmake documentation, please see:
172    
173        http://mitgcm.org/public/devel_HOWTO/
174    
175    EOF
176    
177        exit 1
178    }
179    
180  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
181  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
182  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
183      cpp_options=$1      cpp_options=$1
184      pkg=$2      pkg=$2
185      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
186      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
187      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
188      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
189  }  }
190    
191  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
192  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
193  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
194      cpp_options=$1      cpp_options=$1
195      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
196      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99  
197  }  }
198    
199  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 34  test_for_mpi_in_cpp_eeoptions() { Line 201  test_for_mpi_in_cpp_eeoptions() {
201  test_for_string_in_file() {  test_for_string_in_file() {
202      file=$1      file=$1
203      strng=$2      strng=$2
204      grep -i "$strng" $file > /dev/null 2>&1      grep "$strng" $file > /dev/null 2>&1
205      RETVAL=$?      RETVAL=$?
206      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
207          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
208          grep -i "$strng" $file          grep -i "$strng" $file
209          return 1          exit 99
210      fi      fi
211      return 0      return 0
212  }  }
# Line 48  test_for_string_in_file() { Line 215  test_for_string_in_file() {
215  # the package list.  # the package list.
216  expand_pkg_groups() {  expand_pkg_groups() {
217      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
218      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
219          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > $TMP.p1
220          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat $TMP.p1 | $AWK '(NF>2 && $2==":"){ print $0 }' > $TMP.p2
221          matched=0          matched=0
222          for i in $PACKAGES ; do          for i in $PACKAGES ; do
223              line=`grep "^ *$i" ./p2.tmp`              line=`grep "^ *$i" $TMP.p2`
224              RETVAL=$?              RETVAL=$?
225              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
226                  matched=1                  matched=1
227                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
228                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
229                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
230              else              else
231                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
232              fi              fi
233          done          done
234          PACKAGES=$new_packages          PACKAGES=$new_packages
235          rm -f ./p[1,2].tmp          rm -f $TMP.p[1,2]
236          return $matched          return $matched
237      else      else
238          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
# Line 102  EOF Line 268  EOF
268              check_for_broken_Ff              check_for_broken_Ff
269          else          else
270              cat <<EOF 2>&1              cat <<EOF 2>&1
271  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
272    (fails the "cp" test) and this program cannot find a suitable    (fails the "cp" test) and this program cannot find a suitable
273    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
274    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
275    
276  EOF  EOF
# Line 129  EOF Line 295  EOF
295  .F.$tfs:  .F.$tfs:
296          $LN \$< \$@          $LN \$< \$@
297  EOF  EOF
298      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
299      RETVAL=$?      RETVAL=$?
300      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
301          if test "x$FS" = x ; then          if test "x$FS" = x ; then
# Line 137  EOF Line 303  EOF
303              FS90='fr9'              FS90='fr9'
304              check_for_broken_Ff              check_for_broken_Ff
305          else          else
306              cat <<EOF 2>&1              echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
307  ERROR: Your file system cannot distinguish between *.F and *.f files              echo "       see simple makefile: '$MAKEFILE' (left here)"
308    (fails the "make/ln" test) and this program cannot find a suitable              echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
309    replacement extension.  Please try a different build environment or              echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
310    contact the <MITgcm-support@mitgcm.org> list for help.              echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
311                echo ""
 EOF  
312              exit -1              exit -1
313              return              return
314          fi          fi
# Line 157  EOF Line 322  EOF
322      return      return
323  }  }
324    
   
325  look_for_makedepend()  {  look_for_makedepend()  {
326    
327      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
# Line 168  look_for_makedepend()  { Line 332  look_for_makedepend()  {
332      #      #
333      #    1) a makedepend implementation shipped with the cyrus-imapd      #    1) a makedepend implementation shipped with the cyrus-imapd
334      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
335      #      #    2) a local tools/xmakedepend shell script
     #    2) a known-buggy xmakedpend shell script  
336      #      #
337      #  So the choices are, in order:      #  So the choices are, in order:
     #  
338      #    1) use the user-specified program      #    1) use the user-specified program
339      #    2) use a system-wide default      #    2) use the local xmakedepend script (get all dependencies, but slower)
340      #    3) locally build and use the cyrus implementation      #    3) use a system-wide default
341      #    4) fall back to the buggy local xmakedpend script      #    4) locally build and use the cyrus makedepend
342        #             (faster, but can miss some dependencies)
343      #      #
344        echo >> $LOGFILE
345        echo "running: look_for_makedepend()" >> $LOGFILE
346        if test "x${MAKEDEPEND}" != x ; then
347            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
348            RETVAL=$?
349            if test x"$RETVAL" = x0 ; then
350                build_cyrus_makedepend
351                RETVAL=$?
352                if test "x$RETVAL" != x0 ; then
353                    echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
354                    MAKEDEPEND=
355                fi
356            else
357                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
358                RETVAL=$?
359                if test "x$RETVAL" = x0 ; then
360                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
361                fi
362                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
363            fi
364        fi
365      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
         which makedepend > /dev/null 2>&1  
         RV0=$?  
366          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
367          #  echo 'MAKEFILE="'$MAKEFILE'"'          #  echo 'MAKEFILE="'$MAKEFILE'"'
368          cat <<EOF >> $MAKEFILE          cat <<EOF >> $MAKEFILE
369  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
370  #  #
371  #   Some "makedepend" implementations will die if they cannot  #   Some "makedepend" implementations will die if they cannot
372  #   find a Makefile -- so this file is here to gives them an  #   find a Makefile -- so this file is here to gives them an
373  #   empty one to find and parse.  #   empty one to find and parse.
374  EOF  EOF
375          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
# Line 196  EOF Line 378  EOF
378        stop        stop
379        end        end
380  EOF  EOF
381          makedepend genmake_tc.f > /dev/null 2>&1          $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
382          RV1=$?          RV1=$?
383            which makedepend > /dev/null 2>&1
384            RV2=$?
385            if test "x${RV2}" = x0 ; then
386                makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
387                RV3=$? ; loc_msg='not working.'
388            else RV3=$RV2 ; loc_msg='not found.'
389            fi
390          test -f $MAKEFILE  &&  rm -f $MAKEFILE          test -f $MAKEFILE  &&  rm -f $MAKEFILE
391          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
392          if test "x${RV0}${RV1}" = x00 ; then          echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
393            if test "x${RV1}" = x0 ; then
394                MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
395                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
396            elif test "x${RV3}" = x0 ; then
397                echo "    local tools/xmakedepend not working. Use system-default makedepend"
398              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
399                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
400          else          else
401              echo "    a system-default makedepend was not found."              echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
402                            echo -n "    Try to build cyrus-makedepend ..."
403              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
404              build_cyrus_makedepend              build_cyrus_makedepend
405              RETVAL=$?              RETVAL=$?
406              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" = x0 ; then
407                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'                  echo "  Works"
408                else
409                    echo "  Fails" ; echo "" >> $LOGFILE
410                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
411                    echo ""
412                    exit -1
413                    return
414              fi              fi
             rm -f ./genmake_cy_md  
         fi  
     else  
         #  echo "MAKEDEPEND=${MAKEDEPEND}"  
         echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1  
         RETVAL=$?  
         if test x"$RETVAL" = x0 ; then  
             build_cyrus_makedepend  
415          fi          fi
416      fi      fi
417  }  }
418    
   
419  build_cyrus_makedepend()  {  build_cyrus_makedepend()  {
420        echo >> $LOGFILE
421        echo "running: build_cyrus_makedepend()" >> $LOGFILE
422      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
423      (      (
424          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
425              &&  ./configure > /dev/null 2>&1  \              &&  ./configure > /dev/null 2>&1  \
426              &&  make > /dev/null 2>&1              &&  $MAKE > /dev/null 2>&1
427          if test -x ./makedepend.exe ; then          if test -x ./makedepend.exe ; then
428              $LN ./makedepend.exe ./makedepend              $LN ./makedepend.exe ./makedepend
429          fi          fi
# Line 241  build_cyrus_makedepend()  { Line 435  build_cyrus_makedepend()  {
435      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
436      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
437          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
438            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
439          return 0          return 0
440      else      else
441          echo "WARNING: unable to build cyrus-imapd-makedepend"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
442          return 1          return 1
443      fi      fi
444  }  }
445    
446  # Guess possible config options for this host  build_embed_encode()
447  find_possible_configs()  {  {
448        printf "  building the embed-encode utility...  "
449      tmp1=`uname`"_"`uname -m`      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
450      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`          if test ! -d "$ROOTDIR/tools/embed_encode" ; then
451      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`              echo
452      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
453      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`              echo
454      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`              EMBED_SRC=f
455      PLATFORM=$tmp3              return 1
456      echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32          fi
457      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`          clist="cc gcc c89 $CC"
458      echo "  The platform appears to be:  $PLATFORM"          for ic in $clist ; do
459                    comm="$ic -o encode_files encode_files.c"
460      echo "test" > test              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
461      ln -s ./test link              RETVAL=$?
462      RETVAL=$?              if test "x$RETVAL" = x0 ; then
463      if test "x${RETVAL}" = x0 ; then                  echo "OK"
464          LN="ln -s"                  return 0
465      else              fi
466          echo "Error: \"ln -s\" does not appear to work on this system!"          done
467          echo "  For help, please contact <MITgcm-support@mitgcm.org>."          echo
468          exit 1          echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
469      fi          echo "      so it has been disabled"
470      rm -f test link          echo
471            EMBED_SRC=f
472      if test "x$CPP" = x ; then          return 1
         CPP="cpp -traditional -P"  
473      fi      fi
474        echo "OK"
475    }
476    
477      look_for_makedepend  #  look for possible C compilers
478    look_for_C_compilers() {
479      #================================================================      echo >> $LOGFILE
480      #  look for possible C compilers      echo "running: look_for_C_compilers()" >> $LOGFILE
481      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"      rm -f ./genmake_hello.c  ./genmake_hello
482      p_CC=      cat >> genmake_hello.c << EOF
     for c in $tmp ; do  
         rm -f ./genmake_hello.c  ./genmake_hello  
         cat >> genmake_hello.c << EOF  
483  #include <stdio.h>  #include <stdio.h>
484  int main(int argc, char **argv) {  int main(int argc, char **argv) {
485    printf("Hello!\n");    printf("Hello!\n");
486    return 0;    return 0;
487  }  }
488  EOF  EOF
489          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
490        p_CC=
491        for c in $tmp ; do
492            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
493            echo $COMM >> $LOGFILE
494            $COMM >> $LOGFILE 2>&1
495          RETVAL=$?          RETVAL=$?
496          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
497                echo " $c test successful" >> $LOGFILE
498              p_CC="$p_CC $c"              p_CC="$p_CC $c"
499          fi          fi
500      done      done
# Line 311  Error: No C compilers were found in your Line 510  Error: No C compilers were found in your
510  EOF  EOF
511          exit 1          exit 1
512      else      else
513          echo "  The possible C compilers found in your path are:"          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
         echo "   "$p_CC  
514          if test "x$CC" = x ; then          if test "x$CC" = x ; then
515              CC=`echo $p_CC | $AWK '{print $1}'`              CC=`echo $p_CC | $AWK '{print $1}'`
516              echo "  Setting C compiler to: "$CC              echo "  Setting C compiler to: "$CC
517          fi          fi
518      fi      fi
519        echo " --> set CC='$CC'" >> $LOGFILE
520    }
521    
522    # Guess possible config options for this host
523    find_possible_optfile()  {
524    
525        echo >> $LOGFILE
526        echo "running: find_possible_optfile()" >> $LOGFILE
527        tmp1=`uname`"_"`uname -m`
528        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
529        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
530        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
531        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
532        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
533        PLATFORM=$tmp3
534        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
535        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
536        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
537    
538      #================================================================      #================================================================
539      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
540      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 gfortran"      echo "  look for possible FORTRAN compilers" >> $LOGFILE
541        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
542      p_FC=      p_FC=
543      for c in $tmp ; do      rm -f ./genmake_hello.f
544          rm -f ./hello.f ./hello      cat >> genmake_hello.f <<EOF
         cat >> hello.f <<EOF  
545        program hello        program hello
546        do i=1,3        do i=1,3
547          print *, 'hello world : ', i          print *, 'hello world : ', i
548        enddo        enddo
549        end        end
550  EOF  EOF
551          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
552            COMM="$f -o genmake_hello genmake_hello.f"
553            echo $COMM >> $LOGFILE
554            $COMM >> $LOGFILE 2>&1
555          RETVAL=$?          RETVAL=$?
556          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
557              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
558                p_FC="$p_FC $f"
559          fi          fi
560      done      done
561      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
562      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
563          cat 1>&2 <<EOF          cat 1>&2 <<EOF
564    
# Line 351  Error: No Fortran compilers were found i Line 571  Error: No Fortran compilers were found i
571  EOF  EOF
572          exit 1          exit 1
573      else      else
574          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
575      fi      fi
576    
577      #  Use the first of the compilers found in the current PATH      #  Use the first of the compilers found in the current PATH
# Line 361  EOF Line 580  EOF
580          for i in $p_FC ; do          for i in $p_FC ; do
581              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
582              if test -r $OPTFILE ; then              if test -r $OPTFILE ; then
583                  echo "  Setting OPTFILE to: "$OPTFILE                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
584                  break                  break
585              fi              fi
586          done          done
# Line 370  EOF Line 589  EOF
589      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
590          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
591          if test ! -r $OPTFILE ; then          if test ! -r $OPTFILE ; then
592               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
593          fi          fi
594      fi      fi
595  #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #   for i in $p_FC ; do  
 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
 #if test -r $p_OF ; then  
 #    OPTFILE=$p_OF  
 #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #    break  
 #fi  
 #   done  
596      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
597          cat 1>&2 <<EOF          cat 1>&2 <<EOF
598    
# Line 399  Error: No options file was found in:  $R Line 608  Error: No options file was found in:  $R
608  EOF  EOF
609          exit 1          exit 1
610      fi      fi
611        }
 #     # look for possible MPI libraries  
 #     mpi_libs=  
 #     mpi_fort=`which mpif77 2>/dev/null`  
 #     RETVAL=$?  
 #     if test "x${RETVAL}" = x0 ; then  
 #       cat >>test.f <<EOF  
 #       PROGRAM HELLO  
 #       DO 10, I=1,10  
 #       PRINT *,'Hello World'  
 #    10 CONTINUE  
 #       STOP  
 #       END  
 # EOF  
 #       eval "$mpi_fort -showme test.f > out"  
 #       RETVAL=$?  
 #       if test "x${RETVAL}" = x0 ; then  
 #           a=`cat out`  
 #           for i in $a ; do  
 #               case $i in  
 #                   -*)  
 #                       mpi_libs="$mpi_libs $i" ;;  
 #               esac  
 #           done  
 #           echo "The MPI libs appear to be:"  
 #           echo "  "$mpi_libs  
 #       fi  
 #       rm -f test.f out  
 #     fi  
612    
613    #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
614    #  checking for additional included headers (in case of chain of included header)
615    mpi_headers_do_local_copy() {
616    
617        dBug=0
618        rm -rf ./mpi_headers
619        if test -d $MPIINCLUDEDIR ; then
620    
621            #----- check for additional headers (chain of included headers)
622            echo -n '  Check MPI headers ... '
623            listIni=$MPI_HEADER_FILES
624            echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
625            outp=$?
626            #- always check mpif.h (the only mpi-header included in standard MITgcm code)
627            if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
628            if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
629    
630            doCheck=1 ; list2copy='' ; list2check=$listIni
631            while test $doCheck = 1 ; do
632              newList=''
633              for i in $list2check ; do
634                if test -f $MPIINCLUDEDIR/$i ; then
635                  newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
636                    sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
637                  if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
638                  for j in $newInc ; do
639                    echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
640                    outp=$?
641                    if test $outp != 0 ; then
642                      if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
643                      newList="$newList $j"
644                    fi
645                  done
646                  if test $dBug = 1 ; then echo "" ; fi
647                fi
648              done
649              if test "x$newList" = x ; then doCheck=0
650              else list2check=$newList ; list2copy="$list2copy $newList"
651              fi
652            done
653            list2copy="$MPI_HEADER_FILES $list2copy"
654            if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
655    
656            #----- create local mpi_headers dir if we have files to copy
657            mkListInc=`echo $list2copy | wc -w`
658            if test $mkListInc != 0 ; then
659              echo 'create local "./mpi_headers" dir'
660              mkdir -p ./mpi_headers
661              INCLUDES="-I./mpi_headers $INCLUDES"
662              mkListInc=1
663            fi
664            if test "x$LOCAL_MPI_HEADERS" != x ; then mkListInc=0 ; fi
665    
666            #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
667            for i in $list2copy ; do
668              if test -f $MPIINCLUDEDIR/$i ; then
669                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
670                if test $i = 'mpif.h' ; then
671                    perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
672                fi
673                if test $mkListInc = 2 ; then
674                    LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
675                fi
676                if test $mkListInc = 1 ; then
677                    LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=2
678                fi
679              fi
680            done
681        else
682            echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a directory"
683            echo "WARNING: => skip checking for MPI headers (no ./mpi_headers dir)"
684    #       exit -1
685        fi
686  }  }
687    
688  #  Parse the package dependency information  #  Parse the package dependency information
# Line 437  get_pdepend_list()  { Line 691  get_pdepend_list()  {
691      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
692      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
693      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
694          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
695          > ./.pd_tmp          > ./.pd_tmp
696        RETVAL=$?
697        if test ! "x${RETVAL}" = x0 ; then
698          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
699          exit 1
700        fi
701      . ./.pd_tmp      . ./.pd_tmp
702      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
     printf "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME  
       -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME  
           Use "NAME" as the adoptfile.  By default, the file at  
           "tools/adjoint_options/adjoint_default" will be used.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -cc NAME | --cc NAME | -cc=NAME | --cc=NAME  
           Use "NAME" as the C compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as gcc, c89, cc, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -ts | --ts  
           Produce timing information per timestep  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from \$PATH/include, link to libraries  
           from \$PATH/lib and use binaries from \$PATH/bin.  
   
     -bash NAME  
           Explicitly specify the Bourne or BASH shell to use  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/devel_HOWTO/  
   
 EOF  
   
     exit 1  
703  }  }
704    
705  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
# Line 571  get_fortran_c_namemangling()  { Line 707  get_fortran_c_namemangling()  {
707    
708      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
709      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
710          return 0          return 0
711      fi      fi
712        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
713    
714      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
715        
716      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
717  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
718  EOF  EOF
719      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
720        echo ' '$COMM >> $LOGFILE
721        $COMM >> $LOGFILE 2>&1
722      RETVAL=$?      RETVAL=$?
723      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
724          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
725          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
726    
727  WARNING: C test compile fails   WARNING: C test compile fails
728  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
729  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
730  EOF  EOF
731          return 1          return 1
732      fi      fi
# Line 595  EOF Line 734  EOF
734      RETVAL=$?      RETVAL=$?
735      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
736          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
737          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
738    
739  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
740  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
741  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
742  EOF  EOF
743          return 1          return 1
744      fi      fi
# Line 609  EOF Line 748  EOF
748        call tsub( string )        call tsub( string )
749        end        end
750  EOF  EOF
751      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
752        echo ' '$COMM >> $LOGFILE
753        $COMM >> $LOGFILE 2>&1
754      RETVAL=$?      RETVAL=$?
755      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
756          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
757          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
758    
759  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
760  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
761  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
762  EOF  EOF
763          return 1          return 1
764      fi      fi
# Line 625  EOF Line 766  EOF
766      RETVAL=$?      RETVAL=$?
767      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
768          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
769          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
770    
771  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
772  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
773  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
774  EOF  EOF
775          return 1          return 1
776      fi      fi
# Line 655  EOF Line 796  EOF
796    
797      #  cleanup the testing files      #  cleanup the testing files
798      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
799    
800        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
801    }
802    
803  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
804        echo >> $LOGFILE
805        echo "running: check_HAVE_CLOC()" >> $LOGFILE
806      get_fortran_c_namemangling      get_fortran_c_namemangling
807      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
808  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 675  void FC_NAMEMANGLE(cloc) ( double *curti Line 819  void FC_NAMEMANGLE(cloc) ( double *curti
819   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
820  }  }
821  EOF  EOF
822      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
823        echo $COMM >> $LOGFILE
824        $COMM >> $LOGFILE 2>&1
825      RET_C=$?      RET_C=$?
826      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
827        program hello        program hello
# Line 685  EOF Line 831  EOF
831        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
832        end        end
833  EOF  EOF
834      $FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
835        echo $COMM >> $LOGFILE
836        $COMM >> $LOGFILE 2>&1
837      RET_F=$?      RET_F=$?
838      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
839      RETVAL=$?      RETVAL=$?
840      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
841          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
842      fi      fi
843      rm -f genmake_tc*      rm -f genmake_tc*
844        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
845  }  }
846    
   
847  check_HAVE_SIGREG()  {  check_HAVE_SIGREG()  {
848        if test ! "x$HAVE_SIGREG" = x ; then
849            return
850        fi
851        echo >> $LOGFILE
852        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
853      get_fortran_c_namemangling      get_fortran_c_namemangling
854      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
855  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 729  void FC_NAMEMANGLE(sigreg) (int * aip) Line 881  void FC_NAMEMANGLE(sigreg) (int * aip)
881      return;      return;
882  }  }
883  EOF  EOF
884      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
885        echo $COMM >> $LOGFILE
886        $COMM >> $LOGFILE 2>&1
887      RET_C=$?      RET_C=$?
888      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
889        program hello        program hello
# Line 739  EOF Line 893  EOF
893        call sigreg(anint)        call sigreg(anint)
894        end        end
895  EOF  EOF
896      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SIGREG()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
897      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
898      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
899      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
900      RETVAL=$?      RETVAL=$?
901      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
902          HAVE_SIGREG=t          HAVE_SIGREG=t
         DEFINES="$DEFINES -DHAVE_SIGREG"  
903      fi      fi
904      rm -f genmake_tc*      rm -f genmake_tc*
905        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
906  }  }
907    
   
908  check_HAVE_SETRLSTK()  {  check_HAVE_SETRLSTK()  {
909        if test ! "x$HAVE_SETRLSTK" = x ; then
910            return
911        fi
912        echo >> $LOGFILE
913        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
914      get_fortran_c_namemangling      get_fortran_c_namemangling
915      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
916  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 770  void FC_NAMEMANGLE(setrlstk) () Line 926  void FC_NAMEMANGLE(setrlstk) ()
926      return;      return;
927  }  }
928  EOF  EOF
929      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
930        echo $COMM >> $LOGFILE
931        $COMM >> $LOGFILE 2>&1
932      RET_C=$?      RET_C=$?
933      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
934        program hello        program hello
# Line 778  EOF Line 936  EOF
936        call setrlstk()        call setrlstk()
937        end        end
938  EOF  EOF
939      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
940      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
941      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
942      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
943      RETVAL=$?      RETVAL=$?
944      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
945          HAVE_SETRLSTK=t          HAVE_SETRLSTK=t
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
946      fi      fi
947      rm -f genmake_tc*      rm -f genmake_tc*
948        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
949  }  }
950    
   
951  check_HAVE_STAT()  {  check_HAVE_STAT()  {
952        echo >> $LOGFILE
953        echo "running: check_HAVE_STAT()" >> $LOGFILE
954      get_fortran_c_namemangling      get_fortran_c_namemangling
955      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
956  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 814  void FC_NAMEMANGLE(tfsize) ( int *nbyte Line 971  void FC_NAMEMANGLE(tfsize) ( int *nbyte
971          *nbyte = -1;          *nbyte = -1;
972  }  }
973  EOF  EOF
974      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
975        echo $COMM >> $LOGFILE
976        $COMM >> genmake_tc.log 2>&1
977      RET_C=$?      RET_C=$?
978      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
979        program hello        program hello
# Line 823  EOF Line 982  EOF
982        print *," HELLO WORLD", nbyte        print *," HELLO WORLD", nbyte
983        end        end
984  EOF  EOF
985      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_STAT()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
986      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
987      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
988      $COMM >> genmake_tc.log 2>&1      $COMM >> genmake_tc.log 2>&1
989      RETVAL=$?      RETVAL=$?
990      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
991          HAVE_STAT=t          HAVE_STAT=t
         DEFINES="$DEFINES -DHAVE_STAT"  
992      fi      fi
993      rm -f genmake_tc*      rm -f genmake_tc*
994        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
995  }  }
996    
   
997  check_netcdf_libs()  {  check_netcdf_libs()  {
998      if test ! "x$SKIP_NETCDF_CHECK" = x ; then      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
999          return          return
1000      fi      fi
1001      echo >> genmake_warnings      echo >> $LOGFILE
1002      echo "running: check_netcdf_libs()" >> genmake_warnings      echo "running: check_netcdf_libs()" >> $LOGFILE
1003      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
1004        program fgennc        program fgennc
1005  #include "netcdf.inc"  #include "netcdf.inc"
1006  EOF  EOF
1007      if test ! "x$MPI" = x ; then     #if test ! "x$MPI" = x ; then
1008          echo '#include "mpif.h"' >> genmake_tnc.F     #    echo '#include "mpif.h"' >> genmake_tnc.F
1009      fi     #fi
1010      cat <<EOF >> genmake_tnc.F      cat <<EOF >> genmake_tnc.F
1011        integer iret, ncid, xid        integer iret, ncid, xid
1012        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
# Line 861  EOF Line 1017  EOF
1017        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1018        end        end
1019  EOF  EOF
1020      echo "===  genmake_tnc.F  ===" > genmake_tnc.log      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
1021      cat genmake_tnc.F >> genmake_tnc.log      cat genmake_tnc.F >> genmake_tnc.log
1022      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log      echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
1023      RET_CPP=f      RET_CPP=f
1024      COMM="$CPP $DEFINES $INCLUDES genmake_tnc.F"      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
1025      echo "$COMM" >> genmake_tnc.log      echo "$COMM" >> genmake_tnc.log
1026      $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t      eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
1027      if test "x$RET_CPP" = xf ; then      if test "x$RET_CPP" = xf ; then
1028          echo "  WARNING: CPP failed to pre-process the netcdf test." \          echo "  WARNING: CPP failed to pre-process the netcdf test." \
1029              >> genmake_tnc.log              >> genmake_tnc.log
# Line 875  EOF Line 1031  EOF
1031              >> genmake_tnc.log              >> genmake_tnc.log
1032      fi      fi
1033      echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log      echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
1034      echo "  &&  $LINK -o genmake_tnc.o $LIBS" >> genmake_tnc.log      echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
1035      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1036          &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
1037      RET_COMPILE=$?      RET_COMPILE=$?
1038      cat genmake_tnc.log >> genmake_warnings      cat genmake_tnc.log >> $LOGFILE
1039    
1040      #EH3  Remove test program execution for machines that either disallow      #EH3  Remove test program execution for machines that either disallow
1041      #EH3  execution or cannot support it (eg. cross-compilers)      #EH3  execution or cannot support it (eg. cross-compilers)
# Line 890  EOF Line 1046  EOF
1046    
1047      if test "x$RET_COMPILE" = x0 ; then      if test "x$RET_COMPILE" = x0 ; then
1048          HAVE_NETCDF=t          HAVE_NETCDF=t
1049            echo "check_netcdf: successful" >> $LOGFILE
1050      else      else
1051          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
1052          echo "try again with added '-lnetcdf'" > genmake_tnc.log          echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1053          echo "$CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS \ " >> genmake_tnc.log          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1054          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1055          echo " &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1056          $CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS 2>/dev/null  \          cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1057              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1058              &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1059          RET_COMPILE=$?          RET_COMPILE=$?
1060          cat genmake_tnc.log >> genmake_warnings          echo >> $LOGFILE
1061            cat genmake_tnc.log >> $LOGFILE
1062          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
1063              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
1064              HAVE_NETCDF=t              HAVE_NETCDF=t
1065                echo "check_netcdf: successful" >> $LOGFILE
1066            else
1067            # try again with "-lnetcdff" added to the libs
1068                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1069                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1070                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1071                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1072                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1073                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1074                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1075                RET_COMPILE=$?
1076                echo >> $LOGFILE
1077                cat genmake_tnc.log >> $LOGFILE
1078                if test "x$RET_COMPILE" = x0 ; then
1079                    LIBS="$LIBS -lnetcdff -lnetcdf"
1080                    HAVE_NETCDF=t
1081                    echo "check_netcdf: successful" >> $LOGFILE
1082                fi
1083          fi          fi
1084      fi      fi
1085      rm -f genmake_tnc*      rm -f genmake_tnc*
1086        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1087    }
1088    
1089    check_lapack_libs()  {
1090        if test "x$CHECK_FOR_LAPACK" = xf ; then return ; fi
1091        echo >> $LOGFILE
1092        echo "running: check_lapack_libs()" >> $LOGFILE
1093        cat <<EOF > genmake_tla.F
1094          program fgenla
1095          integer info
1096          integer ipiv( 2 )
1097          double precision ab( 4, 2 ), b( 2 )
1098          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1099          data b / 1., 1. /
1100          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1101          IF (info .NE. 0) write(*,*) 'Error:', info
1102          write(*,*) b
1103          end
1104    EOF
1105        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1106        cat genmake_tla.F >> genmake_tla.log
1107        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1108        RET_CPP=f
1109        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1110        echo "$COMM" >> genmake_tla.log
1111        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1112        if test "x$RET_CPP" = xf ; then
1113            echo "  WARNING: CPP failed to pre-process the lapack test." \
1114                >> genmake_tla.log
1115            echo "    Please check that \$INCLUDES is properly set." \
1116                >> genmake_tla.log
1117        fi
1118        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1119        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1120        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1121            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1122        RET_COMPILE=$?
1123        cat genmake_tla.log >> $LOGFILE
1124    
1125        # test program execution not always possible (see check_netcdf_libs)
1126        #
1127        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1128        #RETVAL=$?
1129        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1130    
1131        if test "x$RET_COMPILE" = x0 ; then
1132            HAVE_LAPACK=t
1133            echo "check_lapack: successful" >> $LOGFILE
1134        else
1135            # try again with "-llapack" added to the libs
1136            echo "==> try again with added '-llapack'" > genmake_tla.log
1137            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1138            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1139            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1140            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1141                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1142                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1143            RET_COMPILE=$?
1144            echo >> $LOGFILE
1145            cat genmake_tla.log >> $LOGFILE
1146            if test "x$RET_COMPILE" = x0 ; then
1147                LIBS="$LIBS -llapack"
1148                HAVE_LAPACK=t
1149                echo "check_lapack: successful" >> $LOGFILE
1150            else
1151            # try again with "-lf77blas -lcblas" added to the libs
1152                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1153                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1154                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1155                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1156                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1157                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1158                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1159                RET_COMPILE=$?
1160                echo >> $LOGFILE
1161                cat genmake_tla.log >> $LOGFILE
1162                if test "x$RET_COMPILE" = x0 ; then
1163                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1164                    HAVE_LAPACK=t
1165                    echo "check_lapack: successful" >> $LOGFILE
1166                else
1167                # try again with "-latlas" added to the libs
1168                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1169                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1170                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1171                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1172                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1173                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1174                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1175                    RET_COMPILE=$?
1176                    echo >> $LOGFILE
1177                    cat genmake_tla.log >> $LOGFILE
1178                    if test "x$RET_COMPILE" = x0 ; then
1179                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1180                        HAVE_LAPACK=t
1181                        echo "check_lapack: successful" >> $LOGFILE
1182                    fi
1183                fi
1184            fi
1185        fi
1186        rm -f genmake_tla*
1187        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1188  }  }
1189    
1190    check_HAVE_FLUSH()  {
1191        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1192            return
1193        fi
1194        echo >> $LOGFILE
1195        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1196        cat <<EOF > genmake_tflsh.$FS
1197          program fgenflsh
1198          integer iounit
1199          character*9 fname
1200          iounit = 26
1201          fname = 'tmp.tflsh'
1202          open(iounit,FILE=fname,STATUS='unknown')
1203          write(iounit,*) 'genmake_tflsh: hello'
1204          call flush(iounit)
1205          close(iounit)
1206          end
1207    EOF
1208        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1209        cat genmake_tflsh.$FS >> genmake_tflsh.log
1210        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1211    
1212        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1213        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1214        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1215            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1216        RET_COMPILE=$?
1217    
1218        if test "x$RET_COMPILE" = x0 ; then
1219            HAVE_FLUSH=t
1220            #cat genmake_tflsh.log >> $LOGFILE
1221            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1222        else
1223            HAVE_FLUSH=f
1224            cat genmake_tflsh.log >> $LOGFILE
1225        fi
1226        rm -f genmake_tflsh*
1227        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1228    }
1229    
1230  ###############################################################################  ###############################################################################
1231  #   Sequential part of script starts here  #   Sequential part of script starts here
# Line 932  ENABLE= Line 1248  ENABLE=
1248  DISABLE=  DISABLE=
1249  # MAKEFILE=  # MAKEFILE=
1250  # MAKEDEPEND=  # MAKEDEPEND=
1251  PDEPEND=  PKG_DEPEND=
1252  DUMPSTATE=t  PKG_GROUPS=
1253  PDEFAULT=  DUMPSTATE=f
1254  OPTFILE=  OPTFILE=
1255  INCLUDES="-I. $INCLUDES"  INCLUDES="-I. $INCLUDES"
1256  FFLAGS=  FFLAGS=
1257  FOPTIM=  FOPTIM=
1258    FEXTRAFLAGS=
1259    USE_EXTENDED_SRC=
1260    EXTENDED_SRC_FLAG=
1261    GET_FC_VERSION=
1262  CFLAGS=  CFLAGS=
1263  KFLAGS1=  KFLAGS1=
1264  KFLAGS2=  KFLAGS2=
# Line 949  NOOPTFILES= Line 1269  NOOPTFILES=
1269  NOOPTFLAGS=  NOOPTFLAGS=
1270  MPI=  MPI=
1271  MPIPATH=  MPIPATH=
1272    OMP=
1273    OMPFLAG=
1274    USE_R4=
1275  TS=  TS=
1276    PAPIS=
1277    PCLS=
1278    FOOLAD=
1279    PAPI=
1280    PCL=
1281    HPMT=
1282    GSL=
1283    DEVEL=
1284  HAVE_TEST_L=  HAVE_TEST_L=
1285    
1286    # set this to "t" to enable lapack test
1287    CHECK_FOR_LAPACK=f
1288    
1289  # DEFINES checked by test compilation or command-line  # DEFINES checked by test compilation or command-line
1290  HAVE_SYSTEM=  HAVE_SYSTEM=
1291  HAVE_FDATE=  HAVE_FDATE=
1292  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1293  HAVE_CLOC=  HAVE_CLOC=
1294  HAVE_SETRLSTK=  # HAVE_SETRLSTK=
1295  HAVE_STAT=  HAVE_STAT=
1296  HAVE_NETCDF=  HAVE_NETCDF=
1297  HAVE_ETIME=  HAVE_ETIME=
1298  IGNORE_TIME=  IGNORE_TIME=
1299    HAVE_LAPACK=
1300    HAVE_FLUSH=
1301    
1302  MODS=  MODS=
1303  TOOLSDIR=  TOOLSDIR=
# Line 969  SOURCEDIRS= Line 1305  SOURCEDIRS=
1305  INCLUDEDIRS=  INCLUDEDIRS=
1306  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1307    
1308    #- local config file
1309    gm_local="genmake_local"
1310    
1311  G2ARGS=  G2ARGS=
1312  BASH=  BASH=
1313  PWD=`pwd`  PWD=`pwd`
1314  test "x$MAKE" = x  &&  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1315  test "x$AWK" = x   &&  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1316    EMBED_SRC=
1317  THISHOST=`hostname`  THISHOST=`hostname`
1318  THISCWD=`pwd`  THISCWD=`pwd`
1319  THISDATE=`date`  THISDATE=`date`
# Line 983  MACHINE=`uname -a` Line 1323  MACHINE=`uname -a`
1323  EXECUTABLE=  EXECUTABLE=
1324  EXEHOOK=  EXEHOOK=
1325  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1326  IEEE=  IEEE=
1327  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1328      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
# Line 992  FS= Line 1331  FS=
1331  FS90=  FS90=
1332    
1333  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1334    OPENAD=
1335  AD_OPTFILE=  AD_OPTFILE=
1336    CAT_SRC_FOR_TAF=1
1337  TAF=  TAF=
1338  AD_TAF_FLAGS=  AD_TAF_FLAGS=
1339  FTL_TAF_FLAGS=  FTL_TAF_FLAGS=
# Line 1004  FTL_TAF_FLAGS= Line 1345  FTL_TAF_FLAGS=
1345  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1346  TAMC_EXTRA=  TAMC_EXTRA=
1347    
1348    DIVA=
1349    MPIINCLUDEDIR=
1350    MPI_HEADER_FILES=
1351    LOCAL_MPI_HEADERS=
1352    
1353  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1354  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1355  gm_s2="FC CPP IEEE TS MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1356    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1357    
1358  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1359  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1360  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1361  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1362  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="TMP THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1363  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1364    
1365  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1366  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE OPENAD TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1367  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1368  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1369    
1370  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1371  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1372    
1373  cat <<EOF  cat <<EOF
1374    
1375  GENMAKE :  GENMAKE :
1376    
1377  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1378  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1379    or for more detail see the Developer's HOWTO manual at:
1380    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1381    
1382  EOF  EOF
1383    
1384    LOGFILE="genmake.log"
1385    #- clean-up previous genmake logfiles:
1386    rm -f genmake_state genmake_*optfile $LOGFILE
1387    
1388  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
 printf "  getting local config information:  "  
 if test -f $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1389    
1390  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1391  #parse_options  #parse_options
1392  ac_prev=  ac_prev=
1393  for ac_option in "$@" ; do  for ac_option in "$@" ; do
# Line 1075  for ac_option in "$@" ; do Line 1400  for ac_option in "$@" ; do
1400          ac_prev=          ac_prev=
1401          continue          continue
1402      fi      fi
1403        
1404      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1405        
1406      case $ac_option in      case $ac_option in
1407            
1408          -help | --help | -h | --h)          -help | --help | -h | --h)
1409              usage ;;              usage ;;
1410            
1411          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1412              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1413          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1414              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1415          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1416              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1417            
1418            -oad | --oad)
1419                OPENAD="true" ; ALWAYS_USE_F90=1 ;;
1420            -nocat4ad | -dog4ad | -ncad | -dad)
1421                CAT_SRC_FOR_TAF=0 ;;
1422          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1423              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1424          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1425              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1426            
1427          -pdepend | --pdepend)          -pdepend | --pdepend)
1428              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1429          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1430              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1431            
1432          -pdefault | --pdefault)          -pgroups | --pgroups)
1433              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1434          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1435              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1436            
1437          -make | --make | -m | --m)          -make | --make | -m | --m)
1438              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1439          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1440              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1441            
1442          -bash | --bash)          -bash | --bash)
1443              ac_prev=BASH ;;              ac_prev=BASH ;;
1444          -bash=* | --bash=*)          -bash=* | --bash=*)
1445              BASH=$ac_optarg ;;              BASH=$ac_optarg ;;
1446            
1447          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1448              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1449          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
1450              MAKEDEPEND=$ac_optarg ;;              MAKEDEPEND=$ac_optarg ;;
1451            
1452          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -mf | --mf)
1453              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1454          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1455              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1456            
1457          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1458              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1459              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1460              echo              echo
1461              usage              usage
1462              ;;              ;;
1463            
1464          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1465              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1466          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1467              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1468            
1469          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1470              ac_prev=MODS ;;              ac_prev=MODS ;;
1471          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1472              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1473            
1474          -disable | --disable)          -disable | --disable)
1475              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1476          -disable=* | --disable=*)          -disable=* | --disable=*)
1477              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1478            
1479          -enable | --enable)          -enable | --enable)
1480              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1481          -enable=* | --enable=*)          -enable=* | --enable=*)
1482              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1483            
1484          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1485              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1486          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 1161  for ac_option in "$@" ; do Line 1490  for ac_option in "$@" ; do
1490  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1491  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1492  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1493            
1494          -cc | --cc)          -cc | --cc)
1495              ac_prev=CC ;;              ac_prev=CC ;;
1496          -cc=* | --cc=*)          -cc=* | --cc=*)
1497              CC=$ac_optarg ;;              CC=$ac_optarg ;;
1498            
1499          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1500              ac_prev=FC ;;              ac_prev=FC ;;
1501          -fc=* | --fc=*)          -fc=* | --fc=*)
1502              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1503            
1504          -fs | --fs)          -fs | --fs)
1505              ac_prev=FS ;;              ac_prev=FS ;;
1506          -fs=* | --fs=*)          -fs=* | --fs=*)
1507              FS=$ac_optarg ;;              FS=$ac_optarg ;;
1508            
1509          -fs90 | --fs90)          -fs90 | --fs90)
1510              ac_prev=FS90 ;;              ac_prev=FS90 ;;
1511          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1512              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
1513            
1514            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1515                USE_R4=true ;;
1516    
1517          -ieee | --ieee)          -ieee | --ieee)
1518              IEEE=true ;;              IEEE=true ;;
1519          -noieee | --noieee)          -noieee | --noieee)
1520              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1521            -devel | --devel)
1522                IEEE=true ; DEVEL=true ;;
1523            -gsl | --gsl)
1524                GSL=true ;;
1525    
1526          -ts | --ts)          -ts | --ts)
1527              TS=true ;;              TS=true ;;
1528            -papis | --papis)
1529                PAPIS=true ;;
1530            -pcls | --pcls)
1531                PCLS=true ;;
1532            -foolad | --foolad)
1533                FOOLAD=true ;;
1534            -papi | --papi)
1535                PAPI=true ;;
1536            -pcl | --pcl)
1537                PCL=true ;;
1538            -hpmt | --hpmt)
1539                HPMT=true ;;
1540    
1541          -mpi | --mpi)          -mpi | --mpi)
1542              MPI=true ;;              MPI=true ;;
1543          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1544              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1545              MPI=true ;;              MPI=true ;;
1546            
1547  #       -jam | --jam)          -omp | --omp)
1548  #           JAM=1 ;;              OMP=true ;;
1549  #       -nojam | --nojam)          -omp=* | --omp=*)
1550  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1551                        OMP=true ;;
1552    
1553          -ds | --ds)          -ds | --ds)
1554              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1555            
1556            -extra_flag | --extra_flag)
1557                ac_prev=FEXTRAFLAGS ;;
1558            -extra_flag=* | --extra_flag=*)
1559                FEXTRAFLAGS=$ac_optarg ;;
1560    
1561          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1562              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1563          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 1213  for ac_option in "$@" ; do Line 1567  for ac_option in "$@" ; do
1567              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1568          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1569              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1570            
1571          -ignoretime | -ignore_time | --ignoretime | --ignore_time)          -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1572              IGNORE_TIME="-DIGNORE_TIME" ;;              IGNORE_TIME="-DIGNORE_TIME" ;;
1573    
1574            -es | --es | -embed-source | --embed-source)
1575                EMBED_SRC=t ;;
1576    
1577          -*)          -*)
1578              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1579              usage              usage
1580              ;;              ;;
1581            
1582          *)          *)
1583              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1584              usage              usage
1585              ;;              ;;
1586            
1587      esac      esac
1588        
1589  done  done
1590    
1591    #TMP=./genmk_$$
1592    #- try to put temporary files in system-local /tmp dir
1593    TMP=/tmp/genmk_${USER}_$$
1594    touch $TMP ; retVal=$?
1595    if [ $retVal -eq 0 ] ; then
1596      if test ! -r $TMP ; then TMP=./genmk_$$ ; fi
1597    else
1598      TMP=./genmk_$$
1599    fi
1600    rm -f $TMP
1601    #echo "  temp files: $TMP.*"
1602    
1603    printf "  getting local config information:  "
1604    if test -f $gm_local ; then
1605        echo "using $gm_local"
1606        . $gm_local
1607    else
1608        echo "none found"
1609    fi
1610    
1611  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1612      echo      echo
1613      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1614      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1615      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1616      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1617        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1618        echo "WARNING: ignore \"./.genmakerc\" and continue."
1619      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1620  fi  fi
1621    
1622  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
1623  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1624      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1625      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1626          ROOTDIR=".."          ROOTDIR=".."
1627      else      else
1628          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1629              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1630                  ROOTDIR=$d                  ROOTDIR=$d
1631                  printf "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1632                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1633                  break                  break
1634              fi              fi
1635          done          done
# Line 1272  if test ! -d ${ROOTDIR} ; then Line 1647  if test ! -d ${ROOTDIR} ; then
1647  fi  fi
1648    
1649  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1650  if test -f "${ROOTDIR}/doc/tag-index" ; then  version_file="${ROOTDIR}/doc/tag-index"
1651      THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`  if test -f $version_file ; then
1652        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1653    #-  remove ./BUILD_INFO.h file if older than version_file
1654        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1655            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1656            rm -f ./BUILD_INFO.h
1657        fi
1658  fi  fi
1659    
1660  if test "x$MAKEFILE" = x ; then  if test "x$MAKEFILE" = x ; then
1661      MAKEFILE="Makefile"      MAKEFILE="Makefile"
1662  fi  fi
1663    
1664  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:"
1665  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1666      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1667          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1668          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1669          find_possible_configs          find_possible_optfile
1670      else      else
1671          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1672      fi      fi
# Line 1300  if test "x$OPTFILE" != xNONE ; then Line 1681  if test "x$OPTFILE" != xNONE ; then
1681              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1682              exit 1              exit 1
1683          fi          fi
1684          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1685              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1686          fi          fi
1687      else      else
# Line 1309  if test "x$OPTFILE" != xNONE ; then Line 1690  if test "x$OPTFILE" != xNONE ; then
1690      fi      fi
1691  fi  fi
1692    
1693  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1694  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1695      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" != x ; then
1696            AD_OPTFILE=$MITGCM_AD_OF
1697        elif test "x$OPENAD" = x ; then
1698          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1699      else      else
1700          AD_OPTFILE=$MITGCM_AD_OF          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_oad
1701      fi      fi
1702  fi  fi
1703  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
# Line 1327  if test "x${AD_OPTFILE}" != xNONE ; then Line 1710  if test "x${AD_OPTFILE}" != xNONE ; then
1710              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1711              exit 1              exit 1
1712          fi          fi
1713          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1714              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1715          fi          fi
1716      else      else
# Line 1355  Error: no Fortran compiler: please speci Line 1738  Error: no Fortran compiler: please speci
1738  EOF  EOF
1739      exit 1      exit 1
1740  fi  fi
1741    if test "x$GET_FC_VERSION" != x ; then
1742      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1743      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1744      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1745      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1746      if test -s genmake_fc_vers1 ; then
1747        cat genmake_fc_vers1 >> $LOGFILE
1748      else
1749        cat genmake_fc_vers2 >> $LOGFILE
1750      fi
1751      echo "<-- compiler version ----" >> $LOGFILE
1752      rm -f genmake_fc_vers1 genmake_fc_vers2
1753    fi
1754    
1755  if test "x$CC" = x ; then  if test "x$CC" = x ; then
1756      CC=cc      look_for_C_compilers
 #     cat <<EOF 1>&2  
 # Error: no C compiler: please specify using one of the following:  
 #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"  
 #   2) the "-cc=XXX" command-line option  
 #   3) the "./genmake_local" file  
 # EOF  
 #     exit 1  
1757  fi  fi
1758    
1759  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1760      LINK=$FC      LINK=$FC
1761  fi  fi
# Line 1372  if test "x$MAKE" = x ; then Line 1763  if test "x$MAKE" = x ; then
1763      MAKE="make"      MAKE="make"
1764  fi  fi
1765  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1766      CPP=cpp      CPP="cpp -traditional -P"
1767  fi  fi
1768  #EH3 === UGLY ===  #EH3 === UGLY ===
1769  #  The following is an ugly little hack to check for $CPP in /lib/ and  #  The following is an ugly little hack to check for $CPP in /lib/ and
# Line 1399  EOF Line 1790  EOF
1790  else  else
1791      rm -f test_cpp      rm -f test_cpp
1792  fi  fi
1793    
1794  look_for_makedepend  look_for_makedepend
1795    
1796    #  Check that soft-link command is set and usable
1797  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1798      LN="ln -s"      LN="ln -s"
1799  fi  fi
# Line 1409  RETVAL=$? Line 1803  RETVAL=$?
1803  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1804      cat <<EOF 1>&2      cat <<EOF 1>&2
1805    
1806  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1807    command in the optfile.    command in the optfile.
1808    
1809  EOF  EOF
# Line 1427  check_for_broken_Ff Line 1821  check_for_broken_Ff
1821    
1822  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1823        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1824        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI"
1825    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1826    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1827    fi
1828    if test ! "x$OMP" = x ; then
1829          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1830          FFLAGS="$FFLAGS $OMPFLAG"
1831          F90FLAGS="$F90FLAGS $OMPFLAG"
1832          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1833    fi
1834    
1835    if test ! "x$USE_R4" = x ; then
1836          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1837          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1838  fi  fi
1839    
1840  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1841        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
1842        DEFINES="$DEFINES -DTIME_PER_TIMESTEP"        if test ! "x$FOOLAD" = x ; then
1843                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1844          else
1845                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1846          fi
1847          PACKAGES="$PACKAGES showflops"
1848    fi
1849    if test ! "x$PAPIS" = x ; then
1850          echo "  Turning on PAPI flop summary per timestep"
1851          echo "  Please make sure PAPIINC, PAPILIB are defined"
1852          if test ! "x$FOOLAD" = x ; then
1853                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1854          else
1855                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1856          fi
1857          INCLUDES="$INCLUDES $PAPIINC"
1858          LIBS="$LIBS $PAPILIB"
1859          PACKAGES="$PACKAGES showflops"
1860    fi
1861    if test ! "x$PCLS" = x ; then
1862          echo "  Turning on PCL counter summary per timestep"
1863          echo "  Please make sure PCLINC, PCLLIB are defined"
1864          if test ! "x$FOOLAD" = x ; then
1865                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1866          else
1867                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1868          fi
1869          INCLUDES="$INCLUDES $PCLINC"
1870          LIBS="$LIBS $PCLLIB"
1871          PACKAGES="$PACKAGES showflops"
1872    fi
1873    if test ! "x$PAPI" = x ; then
1874          if test ! "x$PAPIS" = x ; then
1875              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1876              echo "  Sticking with PAPI flop summary per timestep!"
1877          else
1878              echo "  Turning on performance analysis with PAPI"
1879              echo "  Please make sure PAPIINC, PAPILIB are defined"
1880              DEFINES="$DEFINES -DUSE_PAPI"
1881              INCLUDES="$INCLUDES $PAPIINC"
1882              LIBS="$LIBS $PAPILIB"
1883          fi
1884    fi
1885    if test ! "x$PCL" = x ; then
1886          if test ! "x$PCLS" = x ; then
1887              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1888              echo "  Sticking with PCL flop summary per timestep!"
1889          else
1890              echo "  Turning on performance analysis with PCL"
1891              echo "  Please make sure PCLINC, PCLLIB are defined"
1892              DEFINES="$DEFINES -DUSE_PCL"
1893              INCLUDES="$INCLUDES $PCLINC"
1894              LIBS="$LIBS $PCLLIB"
1895          fi
1896    fi
1897    if test ! "x$HPMT" = x ; then
1898          if test ! "x$PAPI" = x ; then
1899              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1900              echo "  Sticking with PAPI!"
1901          else
1902            if test ! "x$PCL" = x ; then
1903              echo "  PCL and the HPM Toolkit cannot co-exist!"
1904              echo "  Sticking with PCL!"
1905            else
1906              echo "  Turning on performance analysis with the HPM Toolkit"
1907              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1908              DEFINES="$DEFINES -DUSE_LIBHPM"
1909              INCLUDES="$INCLUDES $HPMTINC"
1910              LIBS="$LIBS $HPMTLIB"
1911            fi
1912          fi
1913    fi
1914    if test ! "x$GSL" = x ; then
1915          echo "  Turning on use of GSL to control floating point calculations"
1916          echo "  Please make sure GSLINC, GSLLIB are defined"
1917          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1918          INCLUDES="$INCLUDES $GSLINC"
1919          LIBS="$LIBS $GSLLIB"
1920    fi
1921    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1922    if test ! "x$USE_EXTENDED_SRC" = x ; then
1923          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1924          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1925  fi  fi
1926    
1927  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
# Line 1475  else Line 1964  else
1964  fi  fi
1965  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1966    
1967  printf "  Do we have the etime() command using $FC...  "  printf "  Do we have the etime() command using $FC... "
1968  cat > genmake_tcomp.$FS <<EOF  cat > genmake_tcomp.$FS <<EOF
1969        program hello        program hello
1970        REAL*4 ACTUAL, TARRAY(2)        REAL*4 actual, tarray(2)
1971        EXTERNAL ETIME        actual = -999.
1972        REAL*4 ETIME        call ETIME( tarray, actual )
1973        actual = etime( tarray )        if ( actual.ge.0. ) then
1974        print *, tarray          print *, 0, tarray, actual
1975          else
1976            print *, 1, tarray, actual
1977          endif
1978        end        end
1979  EOF  EOF
1980  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1981  RETVAL=$?  RETVAL=$?
1982  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1983        echo -n 'c,'
1984        ./genmake_tcomp > genmake_tcomp.out 2>&1
1985        RETVAL=$?
1986    fi
1987    if test "x$RETVAL" = x0 ; then
1988        echo -n 'r:'
1989        RETVAL=`cat genmake_tcomp.out | $AWK '{print $1}'`
1990    fi
1991    if test "x$RETVAL" = x0 ; then
1992      HAVE_ETIME=t      HAVE_ETIME=t
1993      DEFINES="$DEFINES -DHAVE_ETIME"      DEFINES="$DEFINES -DHAVE_ETIME"
1994      echo "yes"      echo " yes"
1995  else  else
1996      HAVE_ETIME=      HAVE_ETIME=
1997      echo "no"      echo " no"
1998  fi  fi
1999    #mkdir chk_etime ; cp -p -f genmake_tcomp* chk_etime
2000  rm -f genmake_tcomp*  rm -f genmake_tcomp*
2001    
2002  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
2003  check_HAVE_CLOC  check_HAVE_CLOC
2004  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
2005        DEFINES="$DEFINES -DHAVE_CLOC"
2006      echo "yes"      echo "yes"
2007  else  else
2008      echo "no"      echo "no"
2009        if test "x$EMBED_SRC" = xt ; then
2010            echo "    WARNING: you requested file embedding but it has"
2011            echo "      been disabled since C code cannot be called"
2012            EMBED_SRC=
2013        fi
2014  fi  fi
2015  rm -f genmake_t*  rm -f genmake_t*
2016    
2017  printf "  Can we unlimit the stack size using $FC...  "  printf "  Can we unlimit the stack size using $FC...  "
2018  check_HAVE_SETRLSTK  check_HAVE_SETRLSTK
2019  if test "x$HAVE_SETRLSTK" != x ; then  if test "x$HAVE_SETRLSTK" = xt ; then
2020        DEFINES="$DEFINES -DHAVE_SETRLSTK"
2021      echo "yes"      echo "yes"
2022  else  else
2023      echo "no"      echo "no"
# Line 1517  rm -f genmake_t* Line 2026  rm -f genmake_t*
2026    
2027  printf "  Can we register a signal handler using $FC...  "  printf "  Can we register a signal handler using $FC...  "
2028  check_HAVE_SIGREG  check_HAVE_SIGREG
2029  if test "x$HAVE_SIGREG" != x ; then  if test "x$HAVE_SIGREG" = xt ; then
2030        DEFINES="$DEFINES -DHAVE_SIGREG"
2031      echo "yes"      echo "yes"
2032  else  else
2033      echo "no"      echo "no"
# Line 1527  rm -f genmake_t* Line 2037  rm -f genmake_t*
2037  printf "  Can we use stat() through C calls...  "  printf "  Can we use stat() through C calls...  "
2038  check_HAVE_STAT  check_HAVE_STAT
2039  if test "x$HAVE_STAT" != x ; then  if test "x$HAVE_STAT" != x ; then
2040        DEFINES="$DEFINES -DHAVE_STAT"
2041      echo "yes"      echo "yes"
2042  else  else
2043      echo "no"      echo "no"
# Line 1536  rm -f genmake_t* Line 2047  rm -f genmake_t*
2047  printf "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
2048  check_netcdf_libs  check_netcdf_libs
2049  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
2050        DEFINES="$DEFINES -DHAVE_NETCDF"
2051        echo "yes"
2052    else
2053        echo "no"
2054    fi
2055    
2056    printf "  Can we create LAPACK-enabled binaries...  "
2057    check_lapack_libs
2058    if test "x$HAVE_LAPACK" != x ; then
2059        DEFINES="$DEFINES -DHAVE_LAPACK"
2060      echo "yes"      echo "yes"
2061  else  else
2062      echo "no"      echo "no"
2063  fi  fi
2064    
2065    printf "  Can we call FLUSH intrinsic subroutine...  "
2066    check_HAVE_FLUSH
2067    if test "x$HAVE_FLUSH" = xt ; then
2068        DEFINES="$DEFINES -DHAVE_FLUSH"
2069        echo "yes"
2070    else
2071        echo "no"
2072    fi
2073    
2074  DEFINES="$DEFINES $IGNORE_TIME"  DEFINES="$DEFINES $IGNORE_TIME"
2075    if test "x$EMBED_SRC" = xt ; then
2076        build_embed_encode
2077    fi
2078    if test "x$EMBED_SRC" = xt ; then
2079        ENABLE="$ENABLE embed_files"
2080    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
2081    fi
2082    
2083  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
2084  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
2085  for d in $MODS ; do  for d in $MODS ; do
2086      if test ! -d $d ; then      if test ! -d $d ; then
2087          echo          echo
2088          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
2089          exit 1          exit 1
2090      else      else
2091          printf " $d"          printf "$d "
2092          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
2093          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
2094      fi      fi
2095  done  done
2096  echo  echo
2097    
2098  if test "x${PLATFORM}" = x ; then  #if test "x${PLATFORM}" = x ; then
2099      PLATFORM=$p_PLATFORM  #    PLATFORM=$p_PLATFORM
2100  fi  #fi
2101    
2102  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
2103      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
# Line 1599  ERROR: neither of the two default script Line 2137  ERROR: neither of the two default script
2137      ${TOOLSDIR}/set64bitConst.sh      ${TOOLSDIR}/set64bitConst.sh
2138      ${TOOLSDIR}/set64bitConst.csh      ${TOOLSDIR}/set64bitConst.csh
2139    
2140    are working so please check paths or specify (with \$S64) a    are working so please check paths or specify (with \$S64) a
2141    working version of this script.    working version of this script.
2142    
2143  EOF  EOF
# Line 1611  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD Line 2149  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD
2149    
2150  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2151    
2152    #  Set Standard Code Directories:
2153    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2154        STANDARDDIRS="eesupp model"
2155    fi
2156    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2157    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2158    ckM=$?
2159    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2160    ckE=$?
2161    if test $ckM = 0 -a $ckE = 1 ; then
2162        STANDARDDIRS="$STANDARDDIRS eesupp"
2163    fi
2164    
2165  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2166  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2167  #  they appear as regular source code  #  they appear as regular source code
2168  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2169      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2170      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2171        ) > make_eesupp.errors 2>&1
2172      RETVAL=$?      RETVAL=$?
2173      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2174          rm -f make_eesupp.errors          rm -f make_eesupp.errors
2175      else      else
2176          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
2177          cat make_eesupp.errors 1>&2          cat make_eesupp.errors 1>&2
2178          exit 1          exit 1
     fi  
 fi  
   
 #same for exch2  
 if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  
     echo "  Making source files in exch2 from  templates"  
     ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         rm -f make_exch2.errors  
     else  
         echo "Error: problem encountered while building source files in exch2:"  
         cat make_exch2.errors 1>&2  
         exit 1  
2179      fi      fi
2180  fi  fi
2181    
2182    #same for pkg/exch2 and pkg/regrid
2183    for pdir in exch2 regrid ; do
2184        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2185            echo "  Making source files in pkg/${pdir} from templates"
2186            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2187            ) > make_${pdir}.errors 2>&1
2188            RETVAL=$?
2189            if test "x${RETVAL}" = x0 ; then
2190                rm -f make_${pdir}.errors
2191            else
2192                echo "Error: problem encountered while building source files in pkg/${pdir}:"
2193                cat make_${pdir}.errors 1>&2
2194                exit 1
2195            fi
2196        fi
2197    done
2198    
2199  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2200  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2201      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2202      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2203          PDEPEND=$tmp  fi
2204      else  if  test "x${PKG_DEPEND}" = x ; then
2205          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2206          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2207  else  else
2208      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2209          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2210          exit 1          exit 1
2211      fi      fi
2212        echo "  getting package dependency info from  $PKG_DEPEND"
2213    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2214        get_pdepend_list $PKG_DEPEND
2215  fi  fi
2216  echo "  getting package dependency info from  $PDEPEND"  
2217  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2218  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2219  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2220      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2221      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2222  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2223  if test ! "x${RETVAL}" = x0 ; then  fi
2224      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2225      exit 1          echo "Warning:  No package groups information was specified."
2226            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2227    else
2228        if test ! -r ${PKG_GROUPS} ; then
2229            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2230            exit 1
2231        fi
2232        echo "  getting package groups info from      $PKG_GROUPS"
2233  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
2234    
2235  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2236  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2237  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2238  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2239      for i in "." $MODS ; do      for i in "." $MODS ; do
2240          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2241                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2242                  break                  break
2243          fi          fi
2244      done      done
2245  fi  fi
2246  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2247      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2248  fi      if test "x${PKG_GROUPS}" = x ; then
2249  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2250      echo "    default packages file disabled"          exit 1
2251        fi
2252  else  else
2253      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2254          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2255            exit 1
2256      else      else
2257          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2258          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2259          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2260          RETVAL=$?          RETVAL=$?
2261          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2262              printf "Error: can't parse default package list "              printf "Error: can't parse package list "
2263              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2264              exit 1              exit 1
2265          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         RET=1  
         while test $RET = 1 ; do expand_pkg_groups; RET=$?; done  
         echo "    after group expansion packages are:  $PACKAGES"  
2266      fi      fi
2267  fi  fi
2268    for i in $pkg_list ; do
2269        PACKAGES="$PACKAGES $i"
2270    done
2271    echo     "    before group expansion packages are:$PACKAGES"
2272    if test "x${PKG_GROUPS}" != x ; then
2273        RET=1
2274        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2275        echo "    after group expansion packages are: $PACKAGES"
2276    fi
2277    
2278  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2279    echo "" > $TMP.pack
2280  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2281      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2282  done  done
2283  for i in `grep  "-" ./.tmp_pack` ; do  for i in `grep  "-" $TMP.pack` ; do
2284      j=`echo $i | sed 's/[-]//'`      j=`echo $i | sed 's/[-]//'`
2285      DISABLE="$DISABLE $j"      DISABLE="$DISABLE $j"
2286  done  done
# Line 1732  for p in $PACKAGES ; do Line 2298  for p in $PACKAGES ; do
2298  done  done
2299  PACKAGES="$pack"  PACKAGES="$pack"
2300  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2301  echo "" > ./.tmp_pack  echo "" > $TMP.pack
2302  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2303  # Test if each explicitly referenced package exists  # Test if each explicitly referenced package exists
2304  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2305      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2306      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2307          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2308          exit 1          exit 1
2309      fi      fi
2310      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2311  done  done
2312  PACKAGES=  PACKAGES=
2313  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do  for i in `grep -v "-" $TMP.pack | sort | uniq` ; do
2314      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2315  done  done
2316  rm -f ./.tmp_pack  rm -f $TMP.pack
2317  echo "    packages are:  $PACKAGES"  echo "    packages are: $PACKAGES"
2318    
2319  #  Check availability of NetCDF and then either build the MNC template  #  Check for package MNC: if NetCDF is available, then build the MNC
2320  #  files or delete mnc from the list of available packages.  #  template files ; otherwise, delete mnc from the list of packages.
2321  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2322  RETVAL=$?  mnc_in=$?
2323  if test "x$RETVAL" = x0 ; then  if test "x$HAVE_NETCDF" != xt ; then
2324      if test "x$HAVE_NETCDF" != xt ; then      if test "x$mnc_in" = x0 ; then
2325          cat <<EOF          cat <<EOF
   
2326  *********************************************************************  *********************************************************************
2327  WARNING: the "mnc" package was enabled but tests failed to compile  WARNING: the "mnc" package was enabled but tests failed to compile
2328    NetCDF applications.  Please check that:    NetCDF applications.  Please check that:
2329    
2330    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2331    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2332         NetCDF library to link against.         NetCDF library to link against.
2333    
2334    Due to this failure, the "mnc" package is now DISABLED.    Due to this failure, the "mnc" package is now DISABLED.
2335  *********************************************************************  *********************************************************************
   
2336  EOF  EOF
2337          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2338          DISABLE="$DISABLE mnc"          DISABLE="$DISABLE mnc"
2339      else      else
2340          ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1      #  this prevent to add mnc (due to pdepend rules) if not available
2341          RETVAL=$?          DISABLE="$DISABLE mnc"
2342          if test "x${RETVAL}" = x0 ; then      fi
2343              rm -f make_mnc.errors  else
2344          else      # we have NetCDF, we try to build MNC template files
2345              echo "Error: problem encountered while building source files in pkg/mnc:"      ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2346              cat make_mnc.errors 1>&2      RETVAL=$?
2347        if test "x${RETVAL}" = x0 ; then
2348            rm -f make_mnc.errors
2349        else
2350            echo "Error: problem encountered while building source files in pkg/mnc:"
2351            cat make_mnc.errors 1>&2
2352            if test "x$mnc_in" = x0 ; then
2353              exit 1              exit 1
2354            else
2355                DISABLE="$DISABLE mnc"
2356          fi          fi
2357      fi      fi
2358  fi  fi
2359    
2360  echo "  applying package dependency rules"  #  Check for package PROFILES: if NetCDF is not available,
2361  ck=  #  then delete profiles from the list of available packages.
2362  while test "x$ck" != xtt ; do  if test "x$HAVE_NETCDF" != xt ; then
2363        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2364        RETVAL=$?
2365        if test "x$RETVAL" = x0 ; then
2366            cat <<EOF
2367    *********************************************************************
2368    WARNING: the "profiles" package was enabled but tests failed to
2369      compile NetCDF applications.  Please check that:
2370    
2371      1) NetCDF is correctly installed for this compiler and
2372      2) the LIBS variable (within the "optfile") specifies the correct
2373           NetCDF library to link against.
2374    
2375      Due to this failure, the "profiles" package is now DISABLED.
2376    *********************************************************************
2377    EOF
2378            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2379            DISABLE="$DISABLE profiles"
2380        else
2381        #  this prevent to add profiles (due to pdepend rules) if not available
2382            DISABLE="$DISABLE profiles"
2383        fi
2384    fi
2385    
2386    #  Make sure the openad package is enabled if using OpenAD
2387    if test "x$OPENAD" != x ; then
2388        echo " $PACKAGES " | grep ' openad ' > /dev/null 2>&1
2389        RETVAL=$?
2390        if test "x$RETVAL" != x0 ; then
2391            cat <<EOF
2392    
2393    *********************************************************************
2394    ERROR: when generating an adjoint with OpenAD, the openad package
2395      must be enabled.  Please add it to packages.conf.
2396    *********************************************************************
2397    
2398    EOF
2399            exit 1
2400        fi
2401    fi
2402    
2403    if  test "x${PKG_DEPEND}" != x ; then
2404      echo "  applying package dependency rules"
2405      ck=
2406      while test "x$ck" != xtt ; do
2407      i=0      i=0
2408      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2409      rtot=$nname      rtot=$nname
2410      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2411    
2412          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2413          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1803  while test "x$ck" != xtt ; do Line 2419  while test "x$ck" != xtt ; do
2419                  pin="t"                  pin="t"
2420              fi              fi
2421          done          done
2422            #  or in the current $STANDARDDIRS list?
2423            for p in $STANDARDDIRS ; do
2424                if test "x$p" = "x$pname" ; then pin="t" ; fi
2425            done
2426    
2427          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2428          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 1825  while test "x$ck" != xtt ; do Line 2445  while test "x$ck" != xtt ; do
2445    
2446          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2447          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2448                #echo "   " $pname ": need to add :" $dname
2449              in_dis="f"              in_dis="f"
2450              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2451                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1845  while test "x$ck" != xtt ; do Line 2466  while test "x$ck" != xtt ; do
2466          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2467          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2468              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2469              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2470              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2471              exit 1              exit 1
2472          fi          fi
2473          i=`echo "$i + 1" | bc -l`          i=`echo "$i + 1" | bc -l`
2474          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2475      done      done
2476      ck=$ck"t"      ck=$ck"t"
2477  done    done
2478  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2479    fi
2480  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2481      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2482      if test -d $adr ; then      if test -d $adr ; then
# Line 1871  done Line 2493  done
2493    
2494  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2495  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2496  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2497  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2498  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2499  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2500  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 1889  for n in $names ; do Line 2511  for n in $names ; do
2511          done          done
2512          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2513              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2514              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2515          fi          fi
2516      fi      fi
2517  done  done
# Line 1900  for i in $PACKAGES ; do Line 2522  for i in $PACKAGES ; do
2522  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2523    
2524  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2525      case $i in      case $i in
2526          aim_v23)          aim_v23)
2527              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2528              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
2529              ;;              ;;
2530      esac      esac
# Line 1910  for i in $PACKAGES ; do Line 2532  for i in $PACKAGES ; do
2532    
2533  done  done
2534    
2535  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2536  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2537  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2538      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2539          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 1947  for i in $spaths ; do Line 2566  for i in $spaths ; do
2566      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2567          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2568          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2569          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2570          for n in $names ; do          for n in $names ; do
2571              test_for_package_in_cpp_options $CPP_OPTIONS $n              test_for_package_in_cpp_options $CPP_OPTIONS $n
2572          done          done
2573      fi      fi
2574      try="$i/CPP_EEOPTIONS.h"      try="$i/CPP_EEOPTIONS.h"
2575      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2576          echo "    found CPP_EEOPTIONS=\"$try\""          echo "    found CPP_EEOPTIONS=\"$try\""
2577          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2578  #**** not yet enabled ****  #**** not yet enabled ****
2579  #        test_for_mpi_in_cpp_eeoptions $try  #        test_for_mpi_in_cpp_eeoptions $try
2580  #**** not yet enabled ****  #**** not yet enabled ****
# Line 1969  fi Line 2588  fi
2588    
2589  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2590  #  compiler.  #  compiler.
2591  if test -f ./ad_files ; then  if test -f $TMP.adSrcFiles ; then
2592      rm -f ./ad_files      rm -f $TMP.adSrcFiles
2593  fi  fi
2594  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2595    touch $TMP.adSrcFiles
2596  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2597      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2598      for j in $list_files ; do      for j in $list_files ; do
2599          cat $i/$j >> ad_files          cat $i/$j >> $TMP.adSrcFiles
2600      done      done
2601  done  done
2602  if test ! "x"$FS = "x.f" ; then  if test ! "x"$FS = "x.f" ; then
2603      cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f      cat $TMP.adSrcFiles | sed -e "s/\.f/.$FS/g" > $TMP.adSrcFiles_f
2604      mv -f ad_files_f ad_files      mv -f $TMP.adSrcFiles_f $TMP.adSrcFiles
2605  fi  fi
2606    
2607  echo  echo
# Line 1993  for i in $INCLUDEDIRS ; do Line 2613  for i in $INCLUDEDIRS ; do
2613      fi      fi
2614  done  done
2615    
2616    if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2617        if test ! "x$MPIINCLUDEDIR" = x ; then
2618            #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2619            #   checking for additional included headers (in case of chain of included
2620            #   header); also set LOCAL_MPI_HEADERS (if not already set)
2621            mpi_headers_do_local_copy
2622        fi
2623    fi
2624    
2625  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2626  rm -rf .links.tmp  rm -rf $TMP.links
2627  mkdir .links.tmp  mkdir $TMP.links
2628  echo "# This section creates symbolic links" > srclinks.tmp  touch $TMP.links/foo
2629  echo "" >> srclinks.tmp  if test ! -r "$TMP.links/foo" ; then
2630  printf 'SRCFILES = '    > srclist.inc      echo
2631  printf 'CSRCFILES = '   > csrclist.inc      echo "ERROR : something is wrong with your directory permissions or"
2632  printf 'F90SRCFILES = ' > f90srclist.inc      echo "   your user file-creation mask (\"umask\") since creating a"
2633  printf 'HEADERFILES = ' > hlist.inc      echo "   sub-dir, touch-ing a file within it, and then reading it is"
2634  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc      echo "   not working.  Please try setting your umask to something"
2635        echo "   sane such as:"
2636        echo
2637        echo "      umask 0002"
2638        echo
2639        echo "   and please verify that you have the proper permissions for"
2640        echo "   creating sub-directories and then reading files created"
2641        echo "   within them."
2642        echo
2643        exit 1
2644    fi
2645    rm -f $TMP.links/foo
2646    
2647    if test "x$OPENAD" != x ; then
2648        OAD_DONT_COMPILE="/dev/null"
2649        OAD_DONT_TRANSFORM="/dev/null"
2650        OAD_KEEP_ORIGINAL="/dev/null"
2651        OAD_CB2M_FILES="/dev/null"
2652        OADTOOLS="$TOOLSDIR/OAD_support"
2653        echo "  looking for dontCompile file:  "
2654        for i in "." $MODS $OADTOOLS ; do
2655            if test -r $i"/dontCompile" ; then
2656                OAD_DONT_COMPILE=$i"/dontCompile"
2657                echo "     found $OAD_DONT_COMPILE"
2658                break
2659            fi
2660        done
2661        echo "  looking for dontTransform file:  "
2662        for i in "." $MODS $OADTOOLS ; do
2663            if test -r $i"/dontTransform" ; then
2664                OAD_DONT_TRANSFORM=$i"/dontTransform"
2665                echo "     found $OAD_DONT_TRANSFORM"
2666                break
2667            fi
2668        done
2669        echo "  looking for keepOriginal file:  "
2670        for i in "." $MODS $OADTOOLS ; do
2671            if test -r $i"/keepOriginal" ; then
2672                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2673                echo "     found $OAD_KEEP_ORIGINAL"
2674                break
2675            fi
2676        done
2677        echo "  looking for cb2mFiles:  "
2678        for i in "." $MODS $OADTOOLS ; do
2679            if test -r $i"/cb2mFiles" ; then
2680                OAD_CB2M_FILES=$i"/cb2mFiles"
2681                echo "     found $OAD_CB2M_FILES"
2682                break
2683            fi
2684        done
2685        echo "   OpenAD exceptions:  "
2686    fi
2687    
2688    echo "# This section creates symbolic links" > $TMP.srclinks
2689    echo "" >> $TMP.srclinks
2690    printf 'F77_SRC_FILES = ' > $TMP.F77srclist
2691    printf 'NON_AD_F77_SRC_FILES = ' > $TMP.nonADF77srclist
2692    printf 'C_SRC_FILES = '   > $TMP.csrclist
2693    printf 'F90_SRC_FILES = ' > $TMP.F90srclist
2694    printf 'H_SRC_FILES = '   > $TMP.hsrclist
2695    printf 'AD_FLOW_FILES = ' > $TMP.ad_flow_files
2696  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2697  for d in $alldirs ; do  for d in $alldirs ; do
2698      deplist=      deplist=
2699      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2700      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2701        if test "x$OPENAD" != x ; then
2702            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2703        fi
2704      for sf in $sfiles ; do      for sf in $sfiles ; do
2705          if test ! -r ".links.tmp/$sf" ; then          if test ! -r "$TMP.links/$sf" ; then
2706              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2707                  ignore_f=f                  ignore_f=f
2708                  case $d/$sf in                  case $d/$sf in
2709                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2710                            ignore_f=t
2711                          ;;                          ;;
2712                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2713                            ignore_f=t
2714                          ;;                          ;;
2715                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2716                            ignore_f=t
2717                          ;;                          ;;
2718                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2719                            ignore_f=t
2720                          ;;                          ;;
2721                    *)                    ./EMBEDDED_FILES.h)
2722                            ignore_f=t
2723                            ;;
2724                      *)
2725                          #  For the local directory *ONLY*,                          #  For the local directory *ONLY*,
2726                          #  ignore all soft-links                          #  ignore all soft-links
2727                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2728                              ignore_f=t                              ignore_f=t
2729                          else                          else
2730                              touch .links.tmp/$sf                              touch $TMP.links/$sf
2731                              deplist="$deplist $sf"                              deplist="$deplist $sf"
2732                          fi                          fi
2733                          ;;                          ;;
2734                  esac                  esac
2735                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2736                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2737                      case $extn in                      case $extn in
2738                          F)                        F)
2739                              echo    " \\"  >> srclist.inc                          echo    " \\"  >> $TMP.F77srclist
2740                              printf " $sf" >> srclist.inc                          printf " $sf" >> $TMP.F77srclist
2741                              ;;                          if test "x$OPENAD" = x ; then
2742                          F90)                              basename=${sf%%.F}
2743                              echo    " \\"  >> f90srclist.inc                              isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2744                              printf " $sf" >> f90srclist.inc                              if test -z "$isAD" ; then
2745                              ;;                                  echo    " \\"  >> $TMP.nonADF77srclist
2746                          c)                                  printf " $sf" >> $TMP.nonADF77srclist
2747                              echo    " \\"  >> csrclist.inc                              fi
2748                              printf " $sf" >> csrclist.inc                          else #- OpenAD case:
2749                              ;;                              basename=${sf%%.F}
2750                          h)                              isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2751                              echo    " \\"  >> hlist.inc                              if test -z "$isAD" ; then
2752                              printf " $sf" >> hlist.inc                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2753                              ;;                                  if test -z "$toBeIgnored" ; then
2754                          flow)                                      echo    " \\"  >> $TMP.nonADF77srclist
2755                              echo    " \\"  >> ad_flow_files.inc                                      printf " $sf" >> $TMP.nonADF77srclist
2756                              printf " $sf" >> ad_flow_files.inc                                  else
2757                              ;;                                      echo "    not to be compiled   :  $sf"
2758                      esac                                  fi
2759                  fi                              else # file is initially listed as an AD file we want to exclude it
2760                                     # or we want to retain the untransformed version
2761                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2762                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2763                                    if test -n "$notToBeTransformed"; then
2764                                        echo "    not to be transformed:  $sf"
2765                                    fi
2766                                    if test -n "$untransformedVersionToBeKept" ; then
2767                                        echo "    original to be kept  :  $sf"
2768                                    fi
2769                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2770                                        echo    " \\"  >> $TMP.nonADF77srclist
2771                                        printf " $sf" >> $TMP.nonADF77srclist
2772                                    fi
2773                                fi
2774                            fi
2775                            ;;
2776                        F90)
2777                            echo    " \\"  >> $TMP.F90srclist
2778                            printf " $sf" >> $TMP.F90srclist
2779                            ;;
2780                        c)
2781                            echo    " \\"  >> $TMP.csrclist
2782                            printf " $sf" >> $TMP.csrclist
2783                            ;;
2784                        h)
2785                            echo    " \\"  >> $TMP.hsrclist
2786                            printf " $sf" >> $TMP.hsrclist
2787                            ;;
2788                        flow)
2789                            echo    " \\"  >> $TMP.ad_flow_files
2790                            printf " $sf" >> $TMP.ad_flow_files
2791                            ;;
2792                       esac
2793                    fi
2794              fi              fi
2795          fi          fi
2796      done      done
2797      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2798          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2799          echo "#  These files are linked from $d" >> srclinks.tmp          echo "" >> $TMP.srclinks
2800          echo "$deplist :" >> srclinks.tmp          echo "#  These files are linked from $d" >> $TMP.srclinks
2801          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp          echo "$deplist :" >> $TMP.srclinks
2802      fi  # We need to make sure that the link isn't already there.
2803    # This may happen when make thinks that a header file has to be "remade"
2804    # because a module it depends on has changed.  In this case we do nothing.
2805            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> $TMP.srclinks
2806          fi
2807        fi
2808    done
2809    rm -rf $TMP.links
2810    echo "" >> $TMP.F77srclist
2811    echo "" >> $TMP.nonADF77srclist
2812    echo "" >> $TMP.csrclist
2813    echo "" >> $TMP.F90srclist
2814    echo "" >> $TMP.hsrclist
2815    echo "" >> $TMP.ad_flow_files
2816    
2817    CMDLINE=$0
2818    for xx in "$@" ; do nw=`echo $xx | wc -w`
2819        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2820                            else CMDLINE="$CMDLINE '$xx'" ; fi
2821  done  done
 rm -rf .links.tmp  
 echo "" >> srclist.inc  
 echo "" >> csrclist.inc  
 echo "" >> f90srclist.inc  
 echo "" >> hlist.inc  
 echo "" >> ad_flow_files.inc  
2822    
2823  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2824      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2825  fi  fi
2826  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2827  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 2083  echo "#    $MACHINE" >> $MAKEFILE Line 2829  echo "#    $MACHINE" >> $MAKEFILE
2829  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2830  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2831  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2832  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2833  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2834  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2835    
# Line 2094  EXE_SVD=$EXECUTABLE"_svd" Line 2840  EXE_SVD=$EXECUTABLE"_svd"
2840  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2841  #  #
2842  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2843  #  #
2844  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2845  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2846  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 2105  cat >>$MAKEFILE <<EOF Line 2851  cat >>$MAKEFILE <<EOF
2851  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2852  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2853  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2854  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2855  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2856  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 2114  cat >>$MAKEFILE <<EOF Line 2858  cat >>$MAKEFILE <<EOF
2858  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2859    
2860  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2861  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2862  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2863  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2864  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2865  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2866  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2867    OADTOOLS    = ${OADTOOLS}
2868    
2869  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2870  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 2132  DISABLED_PACKAGES = ${DISABLED_PACKAGES} Line 2877  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2877    
2878  # These files are created by Makefile  # These files are created by Makefile
2879  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2880  EOF  EOF
2881    
2882  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2883        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2884    else
2885        echo "EMBEDDED_FILES = " >>$MAKEFILE
2886    fi
2887    
2888    # extract default cpp search path so we can pass it to makedepend
2889    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2890    
2891  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2892  # Unix ln (link)  # Unix ln (link)
2893  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2894  # Dependency generator  # Dependency generator
2895  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2896  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 2159  LINK = ${LINK} ${LDADD} Line 2908  LINK = ${LINK} ${LDADD}
2908  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2909  # Includes for CPP  # Includes for CPP
2910  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2911    # default CPP includes for makedepend
2912    CPPINCLUDES = ${CPPINCLUDES}
2913  # Flags for KPP  # Flags for KPP
2914  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2915  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2916  # Optim./debug for FC  # Optim./debug for FC
2917  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS}
2918  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM} ${FEXTRAFLAGS}
2919  # Optim./debug for FC  # Optim./debug for FC
2920  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2921  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2922    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2923  # Flags for CC  # Flags for CC
2924  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2925  # Files that should not be optimized  # Files that should not be optimized
# Line 2175  NOOPTFILES = ${NOOPTFILES} Line 2927  NOOPTFILES = ${NOOPTFILES}
2927  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2928  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2929  LIBS = ${LIBS}  LIBS = ${LIBS}
2930  # Name of the Mekfile  # Name of the makefile
2931  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2932    # Name of the make program
2933    MAKE = ${MAKE}
2934    
2935  EOF  EOF
2936    
2937  cat srclist.inc       >> $MAKEFILE  cat $TMP.F77srclist      >> $MAKEFILE
2938  cat csrclist.inc      >> $MAKEFILE  cat $TMP.nonADF77srclist >> $MAKEFILE
2939  cat f90srclist.inc    >> $MAKEFILE  cat $TMP.csrclist        >> $MAKEFILE
2940  cat hlist.inc         >> $MAKEFILE  cat $TMP.F90srclist      >> $MAKEFILE
2941  cat ad_flow_files.inc >> $MAKEFILE  cat $TMP.hsrclist        >> $MAKEFILE
2942    cat $TMP.ad_flow_files   >> $MAKEFILE
2943    
2944    rm -f $TMP.F77srclist $TMP.nonADF77srclist $TMP.csrclist $TMP.F90srclist $TMP.hsrclist $TMP.ad_flow_files
2945    
2946  echo >> $MAKEFILE  echo >> $MAKEFILE
2947  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  
2948  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE  # add definitions for preprocessed sources
2949  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  # and note that not all systems allow case sensitive extensions
2950    # hence the $FS and $FS90 here.
2951    # for fixed format f90 files we use ff90 or FF90 resp
2952    # but these are not expected to be the original source files
2953    
2954    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2955    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2956    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2957    echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2958  echo >> $MAKEFILE  echo >> $MAKEFILE
2959  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2960  echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
 rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
 rm -f ad_flow_files.inc  
2961    
2962  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2963    
2964  all: \$(EXECUTABLE)  all: fwd_exe_target
2965  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  fwd_exe_target:
2966            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2967            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2968            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2969            @-rm -f ad_config.template
2970            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2971    
2972    \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2973          @echo Creating \$@ ...          @echo Creating \$@ ...
2974          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2975    
2976  depend:  depend:
2977          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2978          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2979          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2980          -rm -f makedepend.out          -rm -f makedepend.out
2981    
# Line 2211  lib: libmitgcmuv.a Line 2983  lib: libmitgcmuv.a
2983    
2984  libmitgcmuv.a: \$(OBJFILES)  libmitgcmuv.a: \$(OBJFILES)
2985          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
2986            ar d   libmitgcmuv.a main.o
2987    
2988  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  obj: \$(OBJFILES)
2989    
2990  small_f: \$(F77FILES) \$(F90FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2991    
2992  output.txt: \$(EXECUTABLE)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
         @printf 'running ... '  
         @\$(EXECUTABLE) > \$@  
2993    
2994    # remove most of the files that "make" generates
2995  clean:  clean:
2996          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2997            -rm -rf *.o
2998            -rm -rf *.$FS *.flowdir
2999            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
3000    
3001    # remove most of the files that "make" and "make depend" generate
3002  Clean:  Clean:
3003          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
3004          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
3005          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
3006          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
3007    
3008    # remove also the executable, files that "genmake2" generates (except Makefile)
3009    #         and output from a run (plus log files from testreport)
3010  CLEAN:  CLEAN:
3011          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
3012            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
3013            -rm -f $LOGFILE genmake_state genmake_*optfile
3014            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
3015            -rm -rf mpi_headers mnc_test_*
3016          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
3017          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
3018          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
3019          -rm -f \$(EXECUTABLE) output.txt STD*          -rm -f *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
3020            -rm -f datetime costfinal divided.ctrl snapshot* output_adm.txt.diva_*
3021            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
3022            -rm -f oad_cp.[0-9][0-9][0-9].?????
3023    
 #eh3 Makefile: makefile  
3024  makefile:  makefile:
3025          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
3026  cleanlinks:  cleanlinks:
3027          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
3028    
3029  # Special targets (SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
3030  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
3031          @echo Creating \$@ ...          @echo Creating \$@ ...
3032          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
3033  AD_CONFIG.h:  AD_CONFIG.h:
3034          @echo Creating \$@ ...          @echo Creating \$@ ...
3035          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
3036  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
3037          @echo Creating \$@ ...          @echo Creating \$@ ...
3038          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
# Line 2260  test ! "x$THISUSER" = x && echo "      -echo Line 3046  test ! "x$THISUSER" = x && echo "      -echo
3046  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
3047  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
3048    
3049    if test "x$EMBED_SRC" = xt ; then
3050        cat >>$MAKEFILE <<EOF
3051    
3052    decode_files.o : EMBEDDED_FILES.h
3053    
3054    ##  \$(F77_PP_SRC_FILES)
3055    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3056            @echo Creating \$@ ...
3057            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3058            -rm -f all_fF.tar.gz
3059            -gzip all_fF.tar
3060    
3061    EMBEDDED_FILES.h : all_fF.tar.gz
3062            @echo Creating \$@ ...
3063            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
3064    
3065    EOF
3066    fi
3067    
3068  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3069    
3070  # The normal chain of rules is (  .F - .$FS - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )
# Line 2267  cat >>$MAKEFILE <<EOF Line 3072  cat >>$MAKEFILE <<EOF
3072  ## This nullifies any default implicit rules concerning these two file types:  ## This nullifies any default implicit rules concerning these two file types:
3073  ## %.o : %.F  ## %.o : %.F
3074    
3075    # C preprocessing and replacing the _d in constants:
3076    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3077    
3078  .F.$FS:  .F.$FS:
3079          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3080  .$FS.o:  .$FS.o:
3081          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3082    .F.o:
3083            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3084  .F90.$FS90:  .F90.$FS90:
3085          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3086    .FF90.f$FS90:
3087            \$(CPPCMD)  > \$@
3088  .$FS90.o:  .$FS90.o:
3089          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3090    .f$FS90.o:
3091            cp \$< \$(basename  \$<).f90
3092            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
3093  .c.o:  .c.o:
3094          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3095    .flow.flowdir:
3096            \$(CPPCMD) > \$@
3097    
3098  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3099  .F.p:  .F.p:
3100          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3101  .p.$FS:  .p.$FS:
3102          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3103    
3104    EOF
3105    
3106  #=========================================  #=========================================
3107  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
3108    #===  for TAMC/TAF  ======================
3109    
3110    if test "x$OPENAD" = x ; then
3111    
3112    cat >>$MAKEFILE <<EOF
3113    
3114  TAMC           = ${TAMC}  TAMC           = ${TAMC}
3115  TAF            = ${TAF}  TAF            = ${TAF}
3116    
3117  TAF_EXTRA      = ${TAF_EXTRA}  TAF_EXTRA      = ${TAF_EXTRA}
3118  TAMC_EXTRA     = ${TAMC_EXTRA}  TAMC_EXTRA     = ${TAMC_EXTRA}
3119    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3120    
3121  EOF  EOF
3122    
# Line 2300  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 3125  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
3125  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
3126  for i in $ad_vars ; do  for i in $ad_vars ; do
3127      name=$i      name=$i
3128      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
3129      eval $t1      eval $t1
3130      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
3131      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
3132  done  done
3133    
3134  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
3135  echo >> $MAKEFILE  echo >> $MAKEFILE
3136  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
3137  AD_FILES=`cat ad_files`  AD_FILES=`cat $TMP.adSrcFiles`
3138  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3139      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
3140      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
3141  done  done
3142  echo >> $MAKEFILE  echo >> $MAKEFILE
3143  rm -f ad_files  rm -f $TMP.adSrcFiles
3144    
3145    if test $CAT_SRC_FOR_TAF = 0 ; then
3146    cat >>$MAKEFILE <<EOF
3147    
3148    # ... Utilities ...
3149    remove_comments:
3150            sed -i.bak -f \$(TOOLSDIR)/remove_comments_sed \$(AD_FILES)
3151            @-rm -f \$(AD_FILES:.$FS=.$FS.bak)
3152    adj_sed:
3153            sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_ad.$FS)
3154            @-rm -f \$(AD_FILES:.$FS=_ad.$FS.bak)
3155    ftl_sed:
3156            sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_tl.$FS)
3157            @-rm -f \$(AD_FILES:.$FS=_tl.$FS.bak)
3158    adobjfiles: \$(AD_FILES:.$FS=_ad.o)
3159    ftlobjfiles: \$(AD_FILES:.$FS=_tl.o)
3160    EOF
3161    fi
3162    
3163  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3164    
3165  # ... AD ...  # ... AD ...
3166  adall: ad_taf  adall: ad_exe_target
3167  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
3168  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
3169    
3170  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ad_exe_target:
3171          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @echo Update AD_CONFIG.h and make \$(EXE_AD)
3172            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3173            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3174            @-rm -f ad_config.template
3175            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3176    
3177    ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3178            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3179          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3180          -rm -f ad_config.template          @-rm -f ad_config.template
3181          @make \$(F77FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3182          @make \$(AD_FLOW_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3183          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3184    
3185  ad_taf_output.$FS: ad_input_code.$FS  adtafonly:
3186          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3187            ls -l ad_input_code_ad.$FS
3188          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3189    
3190  adtafonly:  EOF
3191    
3192    if test $CAT_SRC_FOR_TAF = 1 ; then
3193    cat >>$MAKEFILE <<EOF
3194    # ... send 1 file to TAF ...
3195    ad_taf_output.$FS: ad_input_code.$FS
3196            @-rm -f ad_input_code_ad.$FS ; echo ''
3197          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3198            ls -l ad_input_code_ad.$FS
3199          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3200    
3201  ad_taf: ad_taf_output.o \$(OBJFILES)  \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3202          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3203    
3204  ad_tamc_output.$FS: ad_input_code.$FS  adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
         \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS  
         cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS  
3205    
3206  ad_tamc: ad_tamc_output.o \$(OBJFILES)  EOF
3207          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)  
3208    else
3209    cat >>$MAKEFILE <<EOF
3210    # ... send multiple files to TAF ...
3211    ad_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES)
3212            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3213            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3214            @-rm -f ad_config.template
3215            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3216            @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3217            @-rm -f \$(AD_FILES:.$FS=_ad.$FS) \$(AD_FILES:.$FS=_ad.o); echo ''
3218            \$(MAKE) -f \$(MAKEFILE) remove_comments
3219            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) \$(FLOWFILES) \$(AD_FILES)
3220            \$(MAKE) -f \$(MAKEFILE) adj_sed
3221            cat \$(AD_FILES:.$FS=_ad.$FS) > ad_taf_output.$FS
3222    
3223    \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3224            \$(MAKE) -f \$(MAKEFILE) adobjfiles
3225            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_ad.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3226    
3227    adobj: ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
3228            \$(MAKE) -f \$(MAKEFILE) adobjfiles
3229    
3230    EOF
3231    fi
3232    
3233    cat >>$MAKEFILE <<EOF
3234  adonlyfwd:  adonlyfwd:
3235          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3236    
3237  adtrick:  adtrick:
3238          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3239    
3240    ad_tamc_output.$FS: ad_input_code.$FS
3241            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3242            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3243    
3244    ad_tamc: ad_tamc_output.o \$(OBJFILES)
3245            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3246    
3247  # ... FTL ...  # ... FTL ...
3248  ftlall: ftl_taf  ftlall: ftl_exe_target
3249  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
3250  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
3251    
3252  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ftl_exe_target:
3253          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3254          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3255          -rm -f ftl_config.template          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3256          @make \$(F77FILES)          @-rm -f ad_config.template
3257          @make \$(AD_FLOW_FILES)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
         cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS  
3258    
3259  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_input_code.$FS: \$(AD_FILES)
3260          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3261          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3262            @-rm -f ad_config.template
3263            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3264            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3265            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3266    
3267  ftltafonly:  ftltafonly:
3268          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3269          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          ls -l ftl_input_code_tl.$FS
3270            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3271    
3272    EOF
3273    
3274    if test $CAT_SRC_FOR_TAF = 1 ; then
3275    cat >>$MAKEFILE <<EOF
3276    # ... send 1 file to TAF ...
3277    ftl_taf_output.$FS: ftl_input_code.$FS
3278            @-rm -f ftl_input_code_tl.$FS ; echo ''
3279            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3280            ls -l ftl_input_code_tl.$FS
3281            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3282    
3283    \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3284            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3285    
3286    EOF
3287    
3288    else
3289    cat >>$MAKEFILE <<EOF
3290    # ... send multiple files to TAF ...
3291    ftl_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES)
3292            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3293            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3294            @-rm -f ad_config.template
3295            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3296            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3297            @-rm -f \$(AD_FILES:.$FS=_tl.$FS) \$(AD_FILES:.$FS=_tl.o); echo ''
3298            \$(MAKE) -f \$(MAKEFILE) remove_comments
3299            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) \$(AD_FLOW_FILES) \$(AD_FILES)
3300            \$(MAKE) -f \$(MAKEFILE) ftl_sed
3301            cat \$(AD_FILES:.$FS=_tl.$FS) > ftl_taf_output.$FS
3302    
3303    \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3304            \$(MAKE) -f \$(MAKEFILE) ftlobjfiles
3305            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_tl.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3306    
3307  ftl_taf: ftl_taf_output.o \$(OBJFILES)  EOF
3308          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)  fi
3309    
3310    cat >>$MAKEFILE <<EOF
3311  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
3312          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3313          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3314    
3315  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3316          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
3317    
3318  # ... SVD ...  # ... SVD ...
3319  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
# Line 2408  svd_touch: Line 3335  svd_touch:
3335          touch ad_taf_output.$FS ftl_taf_output.$FS          touch ad_taf_output.$FS ftl_taf_output.$FS
3336          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3337          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3338          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3339          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3340          -rm -f ftl_config.template          @-rm -f ad_config.template
3341    
3342  #=========================================  EOF
3343    
3344    fi
3345    
3346    #===  for OpenAD  ========================
3347    
3348    if test "x$OPENAD" != x ; then
3349    
3350    # ============ begin OpenAD specific section ==============
3351    
3352    cat >>$MAKEFILE <<EOF
3353    # ... OpenAD ...
3354    
3355    # all the source files linked from the various locations:
3356    ALL_LINKED_FILES= \
3357    \$(F77_SRC_FILES) \
3358    \$(C_SRC_FILES) \
3359    \$(H_SRC_FILES) \
3360    \$(F90_SRC_FILES) \
3361    \$(SPECIAL_FILES)
3362    
3363    ifndef OPENADROOT
3364      \$(error "Error:  environment variable OPENADROOT not defined!")
3365    endif
3366    
3367    ifndef XAIFSCHEMAROOT
3368      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
3369    endif
3370    
3371    ifndef XAIFBOOSTERROOT
3372      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
3373    endif
3374    
3375    EOF
3376    
3377    echo "  Add the source list for common block to module conversion "
3378    echo >> $MAKEFILE
3379    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3380    for i in `cat ${OAD_CB2M_FILES}` ; do
3381      echo    " \\" >> $MAKEFILE
3382      printf " $i" >> $MAKEFILE
3383    done
3384    echo >> $MAKEFILE
3385    
3386    echo "  Add the source list for AD code generation"
3387    echo >> $MAKEFILE
3388    printf "AD_FILES = " >> $MAKEFILE
3389    for i in `cat ${OAD_CB2M_FILES}` ; do
3390      echo    " \\" >> $MAKEFILE
3391      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3392    done
3393    AD_FILES=`cat $TMP.adSrcFiles`
3394    for i in $AD_FILES ; do
3395      basename=${i%%.f}
3396      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3397      if test -z "$toBeIgnored" ; then
3398        echo    " \\" >> $MAKEFILE
3399        printf " $i" >> $MAKEFILE
3400      fi
3401    done
3402    echo >> $MAKEFILE
3403    rm -f $TMP.adSrcFiles
3404    
3405    cat >>$MAKEFILE <<EOF
3406    
3407    adAll: ad_exe_target
3408    .PHONY: adAll
3409    
3410    ad_exe_target:
3411            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3412            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3413            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3414            @-rm -f ad_config.template
3415            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3416    
3417    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3418    
3419    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3420    
3421    .PHONY: adDepend
3422    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3423            \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3424            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3425            -rm -f makedepend.out
3426    
3427    OPENAD_SUPPORT_F90_SRC_FILES = \
3428    w2f__types.F90 \
3429    OAD_active.F90 \
3430    OAD_cp.F90 \
3431    OAD_rev.F90 \
3432    OAD_tape.F90 \
3433    OAD_regular_cp.F90 \
3434    revolve.F90
3435    
3436    OPENAD_SUPPORT_C_SRC_FILES = \
3437    iaddr.c \
3438    timeRatio.c
3439    
3440    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3441            cat \$^ > \$@
3442    
3443    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3444            cat \$^ > \$@
3445    
3446    f95_test.out: f95_test_mods.f90 f95_test.f90
3447            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3448            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3449    
3450    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3451    
3452    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3453    
3454    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3455    
3456    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3457            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3458    
3459    # create sources files modules from header files containing common blocks
3460    %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3461            \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3462    
3463    # create new header files with USE statements for the new modules made above
3464    %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3465            \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3466    
3467    # change the include directives of everybody to refer to  the new header files with the USE statements
3468    %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3469            \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3470    
3471    # makefile debug rule
3472    small_f: \$(CB2M_F90_PP_SRC_FILES)
3473    .PHONY: small_f
3474    
3475    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3476            cat \$^ > \$@
3477    
3478    # canonicalizer
3479    ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3480            \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3481    
3482    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3483    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3484            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3485    
3486    # F -> WHIRL
3487    ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3488            \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
3489    
3490    # WHIRL -> XAIF
3491    ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3492            \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3493    
3494    # XAIF -> XAIF'
3495    ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3496            \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3497    
3498    # XAIF' -> WHIRL'
3499    ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3500            \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3501    
3502    # WHIRL' -> F'
3503    ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3504            \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3505    
3506    # insert template directives
3507    ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3508            \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3509    
3510    PPEXTRAS=\$(notdir \$(wildcard \${OADTOOLS}/ad_template.*.F)) ad_inline.F
3511    # postprocess F'
3512    postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3513            \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ad_inline.f \$<
3514            # the target is a placeholder to trigger a single execution of the rule
3515            touch \$@
3516    # put this so make knows about the postprocessing output
3517    OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
3518    
3519    # link the XAIF schema files
3520    %.xsd:
3521            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3522    
3523    # link the support files:
3524    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES) \$(PPEXTRAS):
3525            \$(LN) \${OADTOOLS}/\$@ .
3526    
3527    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag
3528    
3529    # ============ end OpenAD specific section ==============
3530    
3531  EOF  EOF
3532    
3533    fi
3534    
3535    #=========================================
3536    
3537  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3538      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3539  fi  fi
# Line 2442  for i in $NOOPTFILES ; do Line 3560  for i in $NOOPTFILES ; do
3560  done  done
3561    
3562  echo "  Add rules for links"  echo "  Add rules for links"
3563  cat srclinks.tmp >> $MAKEFILE  cat $TMP.srclinks >> $MAKEFILE
3564  rm -f srclinks.tmp  rm -f $TMP.srclinks
3565    
3566  echo "  Adding makedepend marker"  echo "  Adding makedepend marker"
3567  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE
# Line 2451  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3569  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3569  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3570    
3571  # Create special header files  # Create special header files
3572  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3573  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3574      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3575  else  else
# Line 2465  else Line 3583  else
3583      fi      fi
3584  fi  fi
3585  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3586      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3587  fi  fi
3588    
   
3589  #  Write the "state" for future records  #  Write the "state" for future records
3590  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3591      printf "" > genmake_state      printf "" > genmake_state
3592      for i in $gm_state ; do      for i in $gm_state ; do
3593          t1="t2=\$$i"          t1="t2=\$$i"
3594          eval $t1          eval $t1
3595          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3596      done      done
3597  fi  fi

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