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revision 1.138 by edhill, Sun Dec 4 13:57:08 2005 UTC revision 1.224 by jmc, Fri Aug 12 21:03:25 2011 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
173  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
175      cpp_options=$1      cpp_options=$1
176      pkg=$2      pkg=$2
177      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
178      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
179      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
180      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
181        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
182        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
183        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
184        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
185  }  }
186    
187  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
188  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
189  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
190      cpp_options=$1      cpp_options=$1
191      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
192      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
193      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
194      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
195        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
196        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
197        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
198        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
199  }  }
200    
201  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 39  test_for_string_in_file() { Line 208  test_for_string_in_file() {
208      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
209          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
210          grep -i "$strng" $file          grep -i "$strng" $file
211          return 1          exit 99
212      fi      fi
213      return 0      return 0
214  }  }
# Line 48  test_for_string_in_file() { Line 217  test_for_string_in_file() {
217  # the package list.  # the package list.
218  expand_pkg_groups() {  expand_pkg_groups() {
219      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
220      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
221          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
222          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
# Line 59  expand_pkg_groups() { Line 227  expand_pkg_groups() {
227              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
228                  matched=1                  matched=1
229                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
230                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
231                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
232              else              else
233                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
# Line 102  EOF Line 270  EOF
270              check_for_broken_Ff              check_for_broken_Ff
271          else          else
272              cat <<EOF 2>&1              cat <<EOF 2>&1
273  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
274    (fails the "cp" test) and this program cannot find a suitable    (fails the "cp" test) and this program cannot find a suitable
275    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
276    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
277    
278  EOF  EOF
# Line 138  EOF Line 306  EOF
306              check_for_broken_Ff              check_for_broken_Ff
307          else          else
308              cat <<EOF 2>&1              cat <<EOF 2>&1
309  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
310    (fails the "make/ln" test) and this program cannot find a suitable    (fails the "make/ln" test) and this program cannot find a suitable
311    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
312    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
313    
314  EOF  EOF
# Line 157  EOF Line 325  EOF
325      return      return
326  }  }
327    
   
328  look_for_makedepend()  {  look_for_makedepend()  {
329    
330      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
# Line 178  look_for_makedepend()  { Line 345  look_for_makedepend()  {
345      #    3) locally build and use the cyrus implementation      #    3) locally build and use the cyrus implementation
346      #    4) fall back to the buggy local xmakedpend script      #    4) fall back to the buggy local xmakedpend script
347      #      #
348        echo >> $LOGFILE
349        echo "running: look_for_makedepend()" >> $LOGFILE
350        if test "x${MAKEDEPEND}" != x ; then
351            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
352            RETVAL=$?
353            if test x"$RETVAL" = x0 ; then
354                build_cyrus_makedepend
355                RETVAL=$?
356                if test "x$RETVAL" != x0 ; then
357                    echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'"
358                    MAKEDEPEND=
359                fi
360            else
361                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
362                RETVAL=$?
363                if test "x$RETVAL" = x0 ; then
364                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
365                fi
366                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
367            fi
368        fi
369      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
370          which makedepend > /dev/null 2>&1          which makedepend > /dev/null 2>&1
371          RV0=$?          RV0=$?
# Line 186  look_for_makedepend()  { Line 374  look_for_makedepend()  {
374          cat <<EOF >> $MAKEFILE          cat <<EOF >> $MAKEFILE
375  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
376  #  #
377  #   Some "makedepend" implementations will die if they cannot  #   Some "makedepend" implementations will die if they cannot
378  #   find a Makefile -- so this file is here to gives them an  #   find a Makefile -- so this file is here to gives them an
379  #   empty one to find and parse.  #   empty one to find and parse.
380  EOF  EOF
381          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
# Line 202  EOF Line 390  EOF
390          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
391          if test "x${RV0}${RV1}" = x00 ; then          if test "x${RV0}${RV1}" = x00 ; then
392              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
393                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
394          else          else
395              echo "    a system-default makedepend was not found."              echo "    system-default makedepend not found. Try to build cyrus-makedepend"
               
396              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
397              build_cyrus_makedepend              build_cyrus_makedepend
398              RETVAL=$?              RETVAL=$?
399              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" != x0 ; then
400                    echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend"
401                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
402                    echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
403              fi              fi
             rm -f ./genmake_cy_md  
         fi  
     else  
         #  echo "MAKEDEPEND=${MAKEDEPEND}"  
         echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1  
         RETVAL=$?  
         if test x"$RETVAL" = x0 ; then  
             build_cyrus_makedepend  
404          fi          fi
405      fi      fi
406  }  }
407    
   
408  build_cyrus_makedepend()  {  build_cyrus_makedepend()  {
409        echo >> $LOGFILE
410        echo "running: build_cyrus_makedepend()" >> $LOGFILE
411      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
412      (      (
413          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
# Line 241  build_cyrus_makedepend()  { Line 424  build_cyrus_makedepend()  {
424      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
425      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
426          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
427            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
428          return 0          return 0
429      else      else
430          echo "WARNING: unable to build cyrus-imapd-makedepend"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
431          return 1          return 1
432      fi      fi
433  }  }
434    
435  # Guess possible config options for this host  build_embed_encode()
436  find_possible_configs()  {  {
437        printf "  building the embed-encode utility...  "
438      tmp1=`uname`"_"`uname -m`      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
439      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`          if test ! -d "$ROOTDIR/tools/embed_encode" ; then
440      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`              echo
441      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
442      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`              echo
443      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`              EMBED_SRC=f
444      PLATFORM=$tmp3              return 1
445      echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32          fi
446      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`          clist="cc gcc c89 $CC"
447      echo "  The platform appears to be:  $PLATFORM"          for ic in $clist ; do
448                    comm="$ic -o encode_files encode_files.c"
449      echo "test" > test              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
450      ln -s ./test link              RETVAL=$?
451      RETVAL=$?              if test "x$RETVAL" = x0 ; then
452      if test "x${RETVAL}" = x0 ; then                  echo "OK"
453          LN="ln -s"                  DEFINES="$DEFINES -DHAVE_EMBED_SRC"
454      else                  return 0
455          echo "Error: \"ln -s\" does not appear to work on this system!"              fi
456          echo "  For help, please contact <MITgcm-support@mitgcm.org>."          done
457          exit 1          echo
458      fi          echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
459      rm -f test link          echo "      so it has been disabled"
460            echo
461      if test "x$CPP" = x ; then          EMBED_SRC=f
462          CPP="cpp -traditional -P"          return 1
463      fi      fi
464        echo "OK"
465        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
466    }
467    
468      look_for_makedepend  #  look for possible C compilers
469    look_for_C_compilers() {
470      #================================================================      echo >> $LOGFILE
471      #  look for possible C compilers      echo "running: look_for_C_compilers()" >> $LOGFILE
472      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"      rm -f ./genmake_hello.c  ./genmake_hello
473      p_CC=      cat >> genmake_hello.c << EOF
     for c in $tmp ; do  
         rm -f ./genmake_hello.c  ./genmake_hello  
         cat >> genmake_hello.c << EOF  
474  #include <stdio.h>  #include <stdio.h>
475  int main(int argc, char **argv) {  int main(int argc, char **argv) {
476    printf("Hello!\n");    printf("Hello!\n");
477    return 0;    return 0;
478  }  }
479  EOF  EOF
480          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
481        p_CC=
482        for c in $tmp ; do
483            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
484            echo $COMM >> $LOGFILE
485            $COMM >> $LOGFILE 2>&1
486          RETVAL=$?          RETVAL=$?
487          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
488                echo " $c test successful" >> $LOGFILE
489              p_CC="$p_CC $c"              p_CC="$p_CC $c"
490          fi          fi
491      done      done
# Line 311  Error: No C compilers were found in your Line 501  Error: No C compilers were found in your
501  EOF  EOF
502          exit 1          exit 1
503      else      else
504          echo "  The possible C compilers found in your path are:"          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
         echo "   "$p_CC  
505          if test "x$CC" = x ; then          if test "x$CC" = x ; then
506              CC=`echo $p_CC | $AWK '{print $1}'`              CC=`echo $p_CC | $AWK '{print $1}'`
507              echo "  Setting C compiler to: "$CC              echo "  Setting C compiler to: "$CC
508          fi          fi
509      fi      fi
510        echo " --> set CC='$CC'" >> $LOGFILE
511    }
512    
513    # Guess possible config options for this host
514    find_possible_optfile()  {
515    
516        echo >> $LOGFILE
517        echo "running: find_possible_optfile()" >> $LOGFILE
518        tmp1=`uname`"_"`uname -m`
519        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
520        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
521        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
522        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
523        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
524        PLATFORM=$tmp3
525        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
526        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
527        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
528    
529      #================================================================      #================================================================
530      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
531      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 gfortran"      echo "  look for possible FORTRAN compilers" >> $LOGFILE
532        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
533      p_FC=      p_FC=
534      for c in $tmp ; do      rm -f ./genmake_hello.f
535          rm -f ./hello.f ./hello      cat >> genmake_hello.f <<EOF
         cat >> hello.f <<EOF  
536        program hello        program hello
537        do i=1,3        do i=1,3
538          print *, 'hello world : ', i          print *, 'hello world : ', i
539        enddo        enddo
540        end        end
541  EOF  EOF
542          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
543            COMM="$f -o genmake_hello genmake_hello.f"
544            echo $COMM >> $LOGFILE
545            $COMM >> $LOGFILE 2>&1
546          RETVAL=$?          RETVAL=$?
547          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
548              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
549                p_FC="$p_FC $f"
550          fi          fi
551      done      done
552      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
553      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
554          cat 1>&2 <<EOF          cat 1>&2 <<EOF
555    
# Line 351  Error: No Fortran compilers were found i Line 562  Error: No Fortran compilers were found i
562  EOF  EOF
563          exit 1          exit 1
564      else      else
565          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
566      fi      fi
567    
568      #  Use the first of the compilers found in the current PATH      #  Use the first of the compilers found in the current PATH
# Line 361  EOF Line 571  EOF
571          for i in $p_FC ; do          for i in $p_FC ; do
572              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
573              if test -r $OPTFILE ; then              if test -r $OPTFILE ; then
574                  echo "  Setting OPTFILE to: "$OPTFILE                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
575                  break                  break
576              fi              fi
577          done          done
# Line 373  EOF Line 583  EOF
583               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
584          fi          fi
585      fi      fi
586  #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #   for i in $p_FC ; do  
 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
 #if test -r $p_OF ; then  
 #    OPTFILE=$p_OF  
 #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #    break  
 #fi  
 #   done  
587      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
588          cat 1>&2 <<EOF          cat 1>&2 <<EOF
589    
# Line 399  Error: No options file was found in:  $R Line 599  Error: No options file was found in:  $R
599  EOF  EOF
600          exit 1          exit 1
601      fi      fi
602        
603  #     # look for possible MPI libraries  #     # look for possible MPI libraries
604  #     mpi_libs=  #     mpi_libs=
605  #     mpi_fort=`which mpif77 2>/dev/null`  #     mpi_fort=`which mpif77 2>/dev/null`
# Line 418  EOF Line 618  EOF
618  #       if test "x${RETVAL}" = x0 ; then  #       if test "x${RETVAL}" = x0 ; then
619  #           a=`cat out`  #           a=`cat out`
620  #           for i in $a ; do  #           for i in $a ; do
621  #               case $i in  #               case $i in
622  #                   -*)  #                   -*)
623  #                       mpi_libs="$mpi_libs $i" ;;  #                       mpi_libs="$mpi_libs $i" ;;
624  #               esac  #               esac
# Line 428  EOF Line 628  EOF
628  #       fi  #       fi
629  #       rm -f test.f out  #       rm -f test.f out
630  #     fi  #     fi
   
631  }  }
632    
633  #  Parse the package dependency information  #  Parse the package dependency information
# Line 437  get_pdepend_list()  { Line 636  get_pdepend_list()  {
636      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
637      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
638      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
639          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
640          > ./.pd_tmp          > ./.pd_tmp
641        RETVAL=$?
642        if test ! "x${RETVAL}" = x0 ; then
643          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
644          exit 1
645        fi
646      . ./.pd_tmp      . ./.pd_tmp
647      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
     printf "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME  
       -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME  
           Use "NAME" as the adoptfile.  By default, the file at  
           "tools/adjoint_options/adjoint_default" will be used.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -cc NAME | --cc NAME | -cc=NAME | --cc=NAME  
           Use "NAME" as the C compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as gcc, c89, cc, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -ts | --ts  
           Produce timing information per timestep  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from \$PATH/include, link to libraries  
           from \$PATH/lib and use binaries from \$PATH/bin.  
   
     -bash NAME  
           Explicitly specify the Bourne or BASH shell to use  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/devel_HOWTO/  
   
 EOF  
   
     exit 1  
648  }  }
649    
650  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
# Line 573  get_fortran_c_namemangling()  { Line 654  get_fortran_c_namemangling()  {
654      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
655          return 0          return 0
656      fi      fi
657        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
658    
659      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
660        
661      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
662  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
663  EOF  EOF
664      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
665        echo ' '$COMM >> $LOGFILE
666        $COMM >> $LOGFILE 2>&1
667      RETVAL=$?      RETVAL=$?
668      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
669          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
670          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
671    
672  WARNING: C test compile fails   WARNING: C test compile fails
673  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
674  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
675  EOF  EOF
676          return 1          return 1
677      fi      fi
# Line 595  EOF Line 679  EOF
679      RETVAL=$?      RETVAL=$?
680      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
681          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
682          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
683    
684  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
685  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
686  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
687  EOF  EOF
688          return 1          return 1
689      fi      fi
# Line 609  EOF Line 693  EOF
693        call tsub( string )        call tsub( string )
694        end        end
695  EOF  EOF
696      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
697        echo ' '$COMM >> $LOGFILE
698        $COMM >> $LOGFILE 2>&1
699      RETVAL=$?      RETVAL=$?
700      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
701          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
702          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
703    
704  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
705  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
706  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
707  EOF  EOF
708          return 1          return 1
709      fi      fi
# Line 625  EOF Line 711  EOF
711      RETVAL=$?      RETVAL=$?
712      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
713          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
714          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
715    
716  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
717  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
718  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
719  EOF  EOF
720          return 1          return 1
721      fi      fi
# Line 655  EOF Line 741  EOF
741    
742      #  cleanup the testing files      #  cleanup the testing files
743      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
744    
745        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
746    }
747    
748  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
749        echo >> $LOGFILE
750        echo "running: check_HAVE_CLOC()" >> $LOGFILE
751      get_fortran_c_namemangling      get_fortran_c_namemangling
752      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
753  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 675  void FC_NAMEMANGLE(cloc) ( double *curti Line 764  void FC_NAMEMANGLE(cloc) ( double *curti
764   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
765  }  }
766  EOF  EOF
767      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
768        echo $COMM >> $LOGFILE
769        $COMM >> $LOGFILE 2>&1
770      RET_C=$?      RET_C=$?
771      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
772        program hello        program hello
# Line 685  EOF Line 776  EOF
776        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
777        end        end
778  EOF  EOF
779      $FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
780        echo $COMM >> $LOGFILE
781        $COMM >> $LOGFILE 2>&1
782      RET_F=$?      RET_F=$?
783      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
784      RETVAL=$?      RETVAL=$?
785      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
786          HAVE_CLOC=t          HAVE_CLOC=t
787          DEFINES="$DEFINES -DHAVE_CLOC"          DEFINES="$DEFINES -DHAVE_CLOC"
788      fi      fi
789      rm -f genmake_tc*      rm -f genmake_tc*
790        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
791  }  }
792    
   
793  check_HAVE_SIGREG()  {  check_HAVE_SIGREG()  {
794        if test ! "x$HAVE_SIGREG" = x ; then
795            return
796        fi
797        echo >> $LOGFILE
798        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
799      get_fortran_c_namemangling      get_fortran_c_namemangling
800      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
801  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 729  void FC_NAMEMANGLE(sigreg) (int * aip) Line 827  void FC_NAMEMANGLE(sigreg) (int * aip)
827      return;      return;
828  }  }
829  EOF  EOF
830      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
831        echo $COMM >> $LOGFILE
832        $COMM >> $LOGFILE 2>&1
833      RET_C=$?      RET_C=$?
834      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
835        program hello        program hello
# Line 739  EOF Line 839  EOF
839        call sigreg(anint)        call sigreg(anint)
840        end        end
841  EOF  EOF
842      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SIGREG()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
843      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
844      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
845      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
846      RETVAL=$?      RETVAL=$?
847      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
848          HAVE_SIGREG=t          HAVE_SIGREG=t
849          DEFINES="$DEFINES -DHAVE_SIGREG"          DEFINES="$DEFINES -DHAVE_SIGREG"
850      fi      fi
851      rm -f genmake_tc*      rm -f genmake_tc*
852        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
853  }  }
854    
   
855  check_HAVE_SETRLSTK()  {  check_HAVE_SETRLSTK()  {
856        if test "x$HAVE_SETRLSTK" = xt ; then
857            DEFINES="$DEFINES -DHAVE_SETRLSTK"
858            return
859        fi  
860        if test ! "x$HAVE_SETRLSTK" = x ; then
861            return
862        fi
863        echo >> $LOGFILE
864        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
865      get_fortran_c_namemangling      get_fortran_c_namemangling
866      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
867  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 770  void FC_NAMEMANGLE(setrlstk) () Line 877  void FC_NAMEMANGLE(setrlstk) ()
877      return;      return;
878  }  }
879  EOF  EOF
880      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
881        echo $COMM >> $LOGFILE
882        $COMM >> $LOGFILE 2>&1
883      RET_C=$?      RET_C=$?
884      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
885        program hello        program hello
# Line 778  EOF Line 887  EOF
887        call setrlstk()        call setrlstk()
888        end        end
889  EOF  EOF
890      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
891      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
892      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
893      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
894      RETVAL=$?      RETVAL=$?
895      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
896          HAVE_SETRLSTK=t          HAVE_SETRLSTK=t
897          DEFINES="$DEFINES -DHAVE_SETRLSTK"          DEFINES="$DEFINES -DHAVE_SETRLSTK"
898      fi      fi
899      rm -f genmake_tc*      rm -f genmake_tc*
900        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
901  }  }
902    
   
903  check_HAVE_STAT()  {  check_HAVE_STAT()  {
904        echo >> $LOGFILE
905        echo "running: check_HAVE_STAT()" >> $LOGFILE
906      get_fortran_c_namemangling      get_fortran_c_namemangling
907      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
908  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 814  void FC_NAMEMANGLE(tfsize) ( int *nbyte Line 923  void FC_NAMEMANGLE(tfsize) ( int *nbyte
923          *nbyte = -1;          *nbyte = -1;
924  }  }
925  EOF  EOF
926      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
927        echo $COMM >> $LOGFILE
928        $COMM >> genmake_tc.log 2>&1
929      RET_C=$?      RET_C=$?
930      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
931        program hello        program hello
# Line 823  EOF Line 934  EOF
934        print *," HELLO WORLD", nbyte        print *," HELLO WORLD", nbyte
935        end        end
936  EOF  EOF
937      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_STAT()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
938      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
939      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
940      $COMM >> genmake_tc.log 2>&1      $COMM >> genmake_tc.log 2>&1
941      RETVAL=$?      RETVAL=$?
942      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
# Line 835  EOF Line 944  EOF
944          DEFINES="$DEFINES -DHAVE_STAT"          DEFINES="$DEFINES -DHAVE_STAT"
945      fi      fi
946      rm -f genmake_tc*      rm -f genmake_tc*
947        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
948  }  }
949    
   
950  check_netcdf_libs()  {  check_netcdf_libs()  {
951      if test ! "x$SKIP_NETCDF_CHECK" = x ; then      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
952          return          return
953      fi      fi
954      echo >> genmake_warnings      echo >> $LOGFILE
955      echo "running: check_netcdf_libs()" >> genmake_warnings      echo "running: check_netcdf_libs()" >> $LOGFILE
956      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
957        program fgennc        program fgennc
958  #include "netcdf.inc"  #include "netcdf.inc"
# Line 861  EOF Line 970  EOF
970        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
971        end        end
972  EOF  EOF
973      echo "===  genmake_tnc.F  ===" > genmake_tnc.log      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
974      cat genmake_tnc.F >> genmake_tnc.log      cat genmake_tnc.F >> genmake_tnc.log
975      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log      echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
976      RET_CPP=f      RET_CPP=f
977      COMM="$CPP $DEFINES $INCLUDES genmake_tnc.F"      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
978      echo "$COMM" >> genmake_tnc.log      echo "$COMM" >> genmake_tnc.log
979      $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t      eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
980      if test "x$RET_CPP" = xf ; then      if test "x$RET_CPP" = xf ; then
981          echo "  WARNING: CPP failed to pre-process the netcdf test." \          echo "  WARNING: CPP failed to pre-process the netcdf test." \
982              >> genmake_tnc.log              >> genmake_tnc.log
# Line 875  EOF Line 984  EOF
984              >> genmake_tnc.log              >> genmake_tnc.log
985      fi      fi
986      echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log      echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
987      echo "  &&  $LINK -o genmake_tnc.o $LIBS" >> genmake_tnc.log      echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
988      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
989          &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
990      RET_COMPILE=$?      RET_COMPILE=$?
991      cat genmake_tnc.log >> genmake_warnings      cat genmake_tnc.log >> $LOGFILE
992    
993      #EH3  Remove test program execution for machines that either disallow      #EH3  Remove test program execution for machines that either disallow
994      #EH3  execution or cannot support it (eg. cross-compilers)      #EH3  execution or cannot support it (eg. cross-compilers)
# Line 890  EOF Line 999  EOF
999    
1000      if test "x$RET_COMPILE" = x0 ; then      if test "x$RET_COMPILE" = x0 ; then
1001          HAVE_NETCDF=t          HAVE_NETCDF=t
1002            echo "check_netcdf: successful" >> $LOGFILE
1003      else      else
1004          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
1005          echo "try again with added '-lnetcdf'" > genmake_tnc.log          echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1006          echo "$CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS \ " >> genmake_tnc.log          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1007          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1008          echo " &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1009          $CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS 2>/dev/null  \          cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1010              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1011              &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1012          RET_COMPILE=$?          RET_COMPILE=$?
1013          cat genmake_tnc.log >> genmake_warnings          echo >> $LOGFILE
1014            cat genmake_tnc.log >> $LOGFILE
1015          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
1016              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
1017              HAVE_NETCDF=t              HAVE_NETCDF=t
1018                echo "check_netcdf: successful" >> $LOGFILE
1019            else
1020            # try again with "-lnetcdff" added to the libs
1021                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1022                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1023                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1024                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1025                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1026                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1027                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1028                RET_COMPILE=$?
1029                echo >> $LOGFILE
1030                cat genmake_tnc.log >> $LOGFILE
1031                if test "x$RET_COMPILE" = x0 ; then
1032                    LIBS="$LIBS -lnetcdff -lnetcdf"
1033                    HAVE_NETCDF=t
1034                    echo "check_netcdf: successful" >> $LOGFILE
1035                fi
1036          fi          fi
1037      fi      fi
1038      rm -f genmake_tnc*      rm -f genmake_tnc*
1039        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1040  }  }
1041    
1042    
   
1043  ###############################################################################  ###############################################################################
1044  #   Sequential part of script starts here  #   Sequential part of script starts here
1045  ###############################################################################  ###############################################################################
# Line 932  ENABLE= Line 1061  ENABLE=
1061  DISABLE=  DISABLE=
1062  # MAKEFILE=  # MAKEFILE=
1063  # MAKEDEPEND=  # MAKEDEPEND=
1064  PDEPEND=  PKG_DEPEND=
1065  DUMPSTATE=t  PKG_GROUPS=
1066  PDEFAULT=  DUMPSTATE=f
1067  OPTFILE=  OPTFILE=
1068  INCLUDES="-I. $INCLUDES"  INCLUDES="-I. $INCLUDES"
1069  FFLAGS=  FFLAGS=
1070  FOPTIM=  FOPTIM=
1071    FEXTRAFLAGS=
1072    USE_EXTENDED_SRC=
1073    EXTENDED_SRC_FLAG=
1074    GET_FC_VERSION=
1075  CFLAGS=  CFLAGS=
1076  KFLAGS1=  KFLAGS1=
1077  KFLAGS2=  KFLAGS2=
# Line 949  NOOPTFILES= Line 1082  NOOPTFILES=
1082  NOOPTFLAGS=  NOOPTFLAGS=
1083  MPI=  MPI=
1084  MPIPATH=  MPIPATH=
1085    OMP=
1086    OMPFLAG=
1087    USE_R4=
1088  TS=  TS=
1089    PAPIS=
1090    PCLS=
1091    FOOLAD=
1092    PAPI=
1093    PCL=
1094    HPMT=
1095    GSL=
1096    DEVEL=
1097  HAVE_TEST_L=  HAVE_TEST_L=
1098    
1099  # DEFINES checked by test compilation or command-line  # DEFINES checked by test compilation or command-line
# Line 957  HAVE_SYSTEM= Line 1101  HAVE_SYSTEM=
1101  HAVE_FDATE=  HAVE_FDATE=
1102  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1103  HAVE_CLOC=  HAVE_CLOC=
1104  HAVE_SETRLSTK=  # HAVE_SETRLSTK=
1105  HAVE_STAT=  HAVE_STAT=
1106  HAVE_NETCDF=  HAVE_NETCDF=
1107  HAVE_ETIME=  HAVE_ETIME=
# Line 974  BASH= Line 1118  BASH=
1118  PWD=`pwd`  PWD=`pwd`
1119  test "x$MAKE" = x  &&  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1120  test "x$AWK" = x   &&  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1121    EMBED_SRC=
1122  THISHOST=`hostname`  THISHOST=`hostname`
1123  THISCWD=`pwd`  THISCWD=`pwd`
1124  THISDATE=`date`  THISDATE=`date`
# Line 983  MACHINE=`uname -a` Line 1128  MACHINE=`uname -a`
1128  EXECUTABLE=  EXECUTABLE=
1129  EXEHOOK=  EXEHOOK=
1130  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1131  IEEE=  IEEE=
1132  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1133      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
# Line 1004  FTL_TAF_FLAGS= Line 1148  FTL_TAF_FLAGS=
1148  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1149  TAMC_EXTRA=  TAMC_EXTRA=
1150    
   
1151  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1152  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS DISABLE ENABLE MAKEFILE MAKEDEPEND PLATFORM"
1153  gm_s2="FC CPP IEEE TS MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CC MPI OMP USE_R4 TS PAPIS PCLS PAPI PCL HPMT IEEE DEVEL GSL FEXTRAFLAGS"
1154    gm_s3="ROOTDIR STANDARDDIRS MODS DUMPSTATE"
1155    
1156  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1157  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM"
1158  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1159  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s6="TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1160  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="PWD THISHOST THISUSER THISDATE THISVER MACHINE"
1161  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s8="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME"
1162    
1163  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1164  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1165  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1166  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA"
1167    
1168  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1169  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1170    
1171  cat <<EOF  cat <<EOF
1172    
1173  GENMAKE :  GENMAKE :
1174    
1175  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1176  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1177    or for more detail see the Developer's HOWTO manual at:
1178    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1179    
1180  EOF  EOF
1181    
1182    LOGFILE="genmake.log"
1183    #- clean-up previous genmake logfiles:
1184    rm -f genmake_state genmake_*optfile $LOGFILE
1185    
1186  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1187  gm_local="genmake_local"  gm_local="genmake_local"
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
1188  printf "  getting local config information:  "  printf "  getting local config information:  "
1189  if test -f $gm_local ; then  if test -f $gm_local ; then
1190      echo "using $gm_local"      echo "using $gm_local"
# Line 1054  else Line 1196  else
1196  fi  fi
1197    
1198  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1199  #parse_options  #parse_options
1200  ac_prev=  ac_prev=
1201  for ac_option in "$@" ; do  for ac_option in "$@" ; do
# Line 1075  for ac_option in "$@" ; do Line 1208  for ac_option in "$@" ; do
1208          ac_prev=          ac_prev=
1209          continue          continue
1210      fi      fi
1211        
1212      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1213        
1214      case $ac_option in      case $ac_option in
1215                    
1216          -help | --help | -h | --h)          -help | --help | -h | --h)
# Line 1096  for ac_option in "$@" ; do Line 1229  for ac_option in "$@" ; do
1229              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1230                    
1231          -pdepend | --pdepend)          -pdepend | --pdepend)
1232              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1233          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1234              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1235                    
1236          -pdefault | --pdefault)          -pgroups | --pgroups)
1237              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1238          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1239              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1240                    
1241          -make | --make | -m | --m)          -make | --make | -m | --m)
1242              ac_prev=MAKE ;;              ac_prev=MAKE ;;
# Line 1182  for ac_option in "$@" ; do Line 1315  for ac_option in "$@" ; do
1315          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1316              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
1317                    
1318            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1319                USE_R4=true ;;
1320    
1321          -ieee | --ieee)          -ieee | --ieee)
1322              IEEE=true ;;              IEEE=true ;;
1323          -noieee | --noieee)          -noieee | --noieee)
1324              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1325            -devel | --devel)
1326                IEEE=true ; DEVEL=true ;;
1327            -gsl | --gsl)
1328                GSL=true ;;
1329    
1330          -ts | --ts)          -ts | --ts)
1331              TS=true ;;              TS=true ;;
1332            -papis | --papis)
1333                PAPIS=true ;;
1334            -pcls | --pcls)
1335                PCLS=true ;;
1336            -foolad | --foolad)
1337                FOOLAD=true ;;
1338            -papi | --papi)
1339                PAPI=true ;;
1340            -pcl | --pcl)
1341                PCL=true ;;
1342            -hpmt | --hpmt)
1343                HPMT=true ;;
1344    
1345          -mpi | --mpi)          -mpi | --mpi)
1346              MPI=true ;;              MPI=true ;;
# Line 1196  for ac_option in "$@" ; do Line 1348  for ac_option in "$@" ; do
1348              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1349              MPI=true ;;              MPI=true ;;
1350                    
1351  #       -jam | --jam)          -omp | --omp)
1352  #           JAM=1 ;;              OMP=true ;;
1353  #       -nojam | --nojam)          -omp=* | --omp=*)
1354  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1355                OMP=true ;;
1356                    
1357          -ds | --ds)          -ds | --ds)
1358              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1359                    
1360            -extra_flag | --extra_flag)
1361                ac_prev=FEXTRAFLAGS ;;
1362            -extra_flag=* | --extra_flag=*)
1363                FEXTRAFLAGS=$ac_optarg ;;
1364            
1365          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1366              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1367          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 1217  for ac_option in "$@" ; do Line 1375  for ac_option in "$@" ; do
1375          -ignoretime | -ignore_time | --ignoretime | --ignore_time)          -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1376              IGNORE_TIME="-DIGNORE_TIME" ;;              IGNORE_TIME="-DIGNORE_TIME" ;;
1377    
1378            -es | --es | -embed-source | --embed-source)
1379                EMBED_SRC=t ;;
1380    
1381          -*)          -*)
1382              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1383              usage              usage
# Line 1228  for ac_option in "$@" ; do Line 1389  for ac_option in "$@" ; do
1389              ;;              ;;
1390                    
1391      esac      esac
       
 done  
1392    
1393    done
1394    
1395  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1396      echo      echo
1397      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1398      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1399      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1400      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1401        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1402        echo "WARNING: ignore \"./.genmakerc\" and continue."
1403      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1404  fi  fi
1405    
1406  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
1407  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1408      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1409      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1410          ROOTDIR=".."          ROOTDIR=".."
1411      else      else
1412          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1413              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1414                  ROOTDIR=$d                  ROOTDIR=$d
1415                  printf "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1416                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1417                  break                  break
1418              fi              fi
1419          done          done
# Line 1272  if test ! -d ${ROOTDIR} ; then Line 1431  if test ! -d ${ROOTDIR} ; then
1431  fi  fi
1432    
1433  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1434  if test -f "${ROOTDIR}/doc/tag-index" ; then  version_file="${ROOTDIR}/doc/tag-index"
1435      THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`  if test -f $version_file ; then
1436        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1437    #-  remove ./BUILD_INFO.h file if older than version_file
1438        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1439            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1440            rm -f ./BUILD_INFO.h
1441        fi
1442  fi  fi
1443    
1444  if test "x$MAKEFILE" = x ; then  if test "x$MAKEFILE" = x ; then
1445      MAKEFILE="Makefile"      MAKEFILE="Makefile"
1446  fi  fi
1447    
1448  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:"
1449  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1450      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1451          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1452          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1453          find_possible_configs          find_possible_optfile
1454      else      else
1455          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1456      fi      fi
# Line 1300  if test "x$OPTFILE" != xNONE ; then Line 1465  if test "x$OPTFILE" != xNONE ; then
1465              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1466              exit 1              exit 1
1467          fi          fi
1468          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1469              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1470          fi          fi
1471      else      else
# Line 1309  if test "x$OPTFILE" != xNONE ; then Line 1474  if test "x$OPTFILE" != xNONE ; then
1474      fi      fi
1475  fi  fi
1476    
1477  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1478  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1479      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
1480          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
# Line 1327  if test "x${AD_OPTFILE}" != xNONE ; then Line 1492  if test "x${AD_OPTFILE}" != xNONE ; then
1492              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1493              exit 1              exit 1
1494          fi          fi
1495          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1496              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1497          fi          fi
1498      else      else
# Line 1355  Error: no Fortran compiler: please speci Line 1520  Error: no Fortran compiler: please speci
1520  EOF  EOF
1521      exit 1      exit 1
1522  fi  fi
1523    if test "x$GET_FC_VERSION" != x ; then
1524      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1525      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1526      if test -s genmake_fc_vers1 ; then
1527        cat genmake_fc_vers1 >> $LOGFILE
1528      else
1529        cat genmake_fc_vers2 >> $LOGFILE
1530      fi
1531      echo "<-- compiler version ----" >> $LOGFILE
1532      rm -f genmake_fc_vers1 genmake_fc_vers2
1533    fi
1534    
1535  if test "x$CC" = x ; then  if test "x$CC" = x ; then
1536      CC=cc      look_for_C_compilers
 #     cat <<EOF 1>&2  
 # Error: no C compiler: please specify using one of the following:  
 #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"  
 #   2) the "-cc=XXX" command-line option  
 #   3) the "./genmake_local" file  
 # EOF  
 #     exit 1  
1537  fi  fi
1538    
1539  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1540      LINK=$FC      LINK=$FC
1541  fi  fi
# Line 1372  if test "x$MAKE" = x ; then Line 1543  if test "x$MAKE" = x ; then
1543      MAKE="make"      MAKE="make"
1544  fi  fi
1545  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1546      CPP=cpp      CPP="cpp -traditional -P"
1547  fi  fi
1548  #EH3 === UGLY ===  #EH3 === UGLY ===
1549  #  The following is an ugly little hack to check for $CPP in /lib/ and  #  The following is an ugly little hack to check for $CPP in /lib/ and
# Line 1399  EOF Line 1570  EOF
1570  else  else
1571      rm -f test_cpp      rm -f test_cpp
1572  fi  fi
1573    
1574  look_for_makedepend  look_for_makedepend
1575    
1576    #  Check that soft-link command is set and usable
1577  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1578      LN="ln -s"      LN="ln -s"
1579  fi  fi
# Line 1409  RETVAL=$? Line 1583  RETVAL=$?
1583  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1584      cat <<EOF 1>&2      cat <<EOF 1>&2
1585    
1586  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1587    command in the optfile.    command in the optfile.
1588    
1589  EOF  EOF
# Line 1429  if test ! "x$MPI" = x ; then Line 1603  if test ! "x$MPI" = x ; then
1603        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1604        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1605  fi  fi
1606    if test ! "x$OMP" = x ; then
1607          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1608          FFLAGS="$FFLAGS $OMPFLAG"
1609          F90FLAGS="$F90FLAGS $OMPFLAG"
1610          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1611    fi
1612    
1613    if test ! "x$USE_R4" = x ; then
1614          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1615          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1616    fi
1617    
1618  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1619        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
1620        DEFINES="$DEFINES -DTIME_PER_TIMESTEP"        if test ! "x$FOOLAD" = x ; then
1621                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1622          else
1623                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1624          fi
1625          PACKAGES="$PACKAGES showflops"
1626    fi
1627    if test ! "x$PAPIS" = x ; then
1628          echo "  Turning on PAPI flop summary per timestep"
1629          echo "  Please make sure PAPIINC, PAPILIB are defined"
1630          if test ! "x$FOOLAD" = x ; then
1631                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1632          else
1633                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1634          fi
1635          INCLUDES="$INCLUDES $PAPIINC"
1636          LIBS="$LIBS $PAPILIB"
1637          PACKAGES="$PACKAGES showflops"
1638    fi
1639    if test ! "x$PCLS" = x ; then
1640          echo "  Turning on PCL counter summary per timestep"
1641          echo "  Please make sure PCLINC, PCLLIB are defined"
1642          if test ! "x$FOOLAD" = x ; then
1643                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1644          else
1645                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1646          fi
1647          INCLUDES="$INCLUDES $PCLINC"
1648          LIBS="$LIBS $PCLLIB"
1649          PACKAGES="$PACKAGES showflops"
1650    fi
1651    if test ! "x$PAPI" = x ; then
1652          if test ! "x$PAPIS" = x ; then
1653              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1654              echo "  Sticking with PAPI flop summary per timestep!"
1655          else
1656              echo "  Turning on performance analysis with PAPI"
1657              echo "  Please make sure PAPIINC, PAPILIB are defined"
1658              DEFINES="$DEFINES -DUSE_PAPI"
1659              INCLUDES="$INCLUDES $PAPIINC"
1660              LIBS="$LIBS $PAPILIB"
1661          fi
1662    fi
1663    if test ! "x$PCL" = x ; then
1664          if test ! "x$PCLS" = x ; then
1665              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1666              echo "  Sticking with PCL flop summary per timestep!"
1667          else
1668              echo "  Turning on performance analysis with PCL"
1669              echo "  Please make sure PCLINC, PCLLIB are defined"
1670              DEFINES="$DEFINES -DUSE_PCL"
1671              INCLUDES="$INCLUDES $PCLINC"
1672              LIBS="$LIBS $PCLLIB"
1673          fi
1674    fi
1675    if test ! "x$HPMT" = x ; then
1676          if test ! "x$PAPI" = x ; then
1677              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1678              echo "  Sticking with PAPI!"
1679          else if test ! "x$PCL" = x ; then
1680              echo "  PCL and the HPM Toolkit cannot co-exist!"
1681              echo "  Sticking with PCL!"
1682          else
1683              echo "  Turning on performance analysis with the HPM Toolkit"
1684              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1685              DEFINES="$DEFINES -DUSE_LIBHPM"
1686              INCLUDES="$INCLUDES $HPMTINC"
1687              LIBS="$LIBS $HPMTLIB"
1688          fi
1689          fi
1690    fi
1691    if test ! "x$GSL" = x ; then
1692          echo "  Turning on use of GSL to control floating point calculations"
1693          echo "  Please make sure GSLINC, GSLLIB are defined"
1694          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1695          INCLUDES="$INCLUDES $GSLINC"
1696          LIBS="$LIBS $GSLLIB"
1697    fi
1698    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1699    if test ! "x$USE_EXTENDED_SRC" = x ; then
1700          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1701          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1702  fi  fi
1703    
1704  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
# Line 1503  if test "x$HAVE_CLOC" != x ; then Line 1769  if test "x$HAVE_CLOC" != x ; then
1769      echo "yes"      echo "yes"
1770  else  else
1771      echo "no"      echo "no"
1772        if test "x$EMBED_SRC" = xt ; then
1773            echo "    WARNING: you requested file embedding but it has"
1774            echo "      been disabled since C code cannot be called"
1775            EMBED_SRC=
1776        fi
1777  fi  fi
1778  rm -f genmake_t*  rm -f genmake_t*
1779    
1780  printf "  Can we unlimit the stack size using $FC...  "  printf "  Can we unlimit the stack size using $FC...  "
1781  check_HAVE_SETRLSTK  check_HAVE_SETRLSTK
1782  if test "x$HAVE_SETRLSTK" != x ; then  if test "x$HAVE_SETRLSTK" = xt ; then
1783      echo "yes"      echo "yes"
1784  else  else
1785      echo "no"      echo "no"
# Line 1517  rm -f genmake_t* Line 1788  rm -f genmake_t*
1788    
1789  printf "  Can we register a signal handler using $FC...  "  printf "  Can we register a signal handler using $FC...  "
1790  check_HAVE_SIGREG  check_HAVE_SIGREG
1791  if test "x$HAVE_SIGREG" != x ; then  if test "x$HAVE_SIGREG" = xt ; then
1792      echo "yes"      echo "yes"
1793  else  else
1794      echo "no"      echo "no"
# Line 1542  else Line 1813  else
1813  fi  fi
1814  DEFINES="$DEFINES $IGNORE_TIME"  DEFINES="$DEFINES $IGNORE_TIME"
1815    
1816    if test "x$EMBED_SRC" = xt ; then
1817        build_embed_encode
1818    fi
1819    if test "x$EMBED_SRC" = xt ; then
1820        ENABLE="$ENABLE embed_files"
1821    fi
1822    
1823  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1824  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1825  for d in $MODS ; do  for d in $MODS ; do
1826      if test ! -d $d ; then      if test ! -d $d ; then
1827          echo          echo
1828          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1829          exit 1          exit 1
1830      else      else
1831          printf " $d"          printf "$d "
1832          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1833          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1834      fi      fi
1835  done  done
1836  echo  echo
1837    
1838  if test "x${PLATFORM}" = x ; then  #if test "x${PLATFORM}" = x ; then
1839      PLATFORM=$p_PLATFORM  #    PLATFORM=$p_PLATFORM
1840  fi  #fi
1841    
1842  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1843      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
# Line 1599  ERROR: neither of the two default script Line 1877  ERROR: neither of the two default script
1877      ${TOOLSDIR}/set64bitConst.sh      ${TOOLSDIR}/set64bitConst.sh
1878      ${TOOLSDIR}/set64bitConst.csh      ${TOOLSDIR}/set64bitConst.csh
1879    
1880    are working so please check paths or specify (with \$S64) a    are working so please check paths or specify (with \$S64) a
1881    working version of this script.    working version of this script.
1882    
1883  EOF  EOF
# Line 1611  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD Line 1889  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD
1889    
1890  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1891    
1892    #  Set Standard Code Directories:
1893    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1894        STANDARDDIRS="eesupp model"
1895    fi
1896    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
1897    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
1898    ckM=$?
1899    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
1900    ckE=$?
1901    if test $ckM = 0 -a $ckE = 1 ; then
1902        STANDARDDIRS="$STANDARDDIRS eesupp"
1903    fi
1904    
1905  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
1906  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
1907  #  they appear as regular source code  #  they appear as regular source code
1908  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1909      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1910      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
1911        ) > make_eesupp.errors 2>&1
1912      RETVAL=$?      RETVAL=$?
1913      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1914          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 1627  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1919  if test -r $ROOTDIR"/eesupp/src/Makefile
1919      fi      fi
1920  fi  fi
1921    
1922  #same for exch2  #same for pkg/exch2 and pkg/regrid
1923  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
1924      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1925      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
1926      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
1927      if test "x${RETVAL}" = x0 ; then          ) > make_${pdir}.errors 2>&1
1928          rm -f make_exch2.errors          RETVAL=$?
1929      else          if test "x${RETVAL}" = x0 ; then
1930          echo "Error: problem encountered while building source files in exch2:"              rm -f make_${pdir}.errors
1931          cat make_exch2.errors 1>&2          else
1932          exit 1              echo "Error: problem encountered while building source files in pkg/${pdir}:"
1933                cat make_${pdir}.errors 1>&2
1934                exit 1
1935            fi
1936      fi      fi
1937  fi  done
1938    
1939  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1940  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
1941      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
1942      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
1943          PDEPEND=$tmp  fi
1944      else  if  test "x${PKG_DEPEND}" = x ; then
1945          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
1946          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
1947  else  else
1948      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
1949          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
1950          exit 1          exit 1
1951      fi      fi
1952        echo "  getting package dependency info from  $PKG_DEPEND"
1953    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
1954        get_pdepend_list $PKG_DEPEND
1955  fi  fi
1956  echo "  getting package dependency info from  $PDEPEND"  
1957  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
1958  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
1959  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
1960      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
1961      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
1962  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
1963  if test ! "x${RETVAL}" = x0 ; then  fi
1964      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
1965      exit 1          echo "Warning:  No package groups information was specified."
1966            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
1967    else
1968        if test ! -r ${PKG_GROUPS} ; then
1969            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
1970            exit 1
1971        fi
1972        echo "  getting package groups info from      $PKG_GROUPS"
1973  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
1974    
1975  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
1976  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
1977  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
1978  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
1979      for i in "." $MODS ; do      for i in "." $MODS ; do
1980          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
1981                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
1982                  break                  break
1983          fi          fi
1984      done      done
1985  fi  fi
1986  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
1987      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
1988  fi      if test "x${PKG_GROUPS}" = x ; then
1989  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
1990      echo "    default packages file disabled"          exit 1
1991        fi
1992  else  else
1993      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
1994          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
1995            exit 1
1996      else      else
1997          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
1998          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1999          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2000          RETVAL=$?          RETVAL=$?
2001          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2002              printf "Error: can't parse default package list "              printf "Error: can't parse package list "
2003              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2004              exit 1              exit 1
2005          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         RET=1  
         while test $RET = 1 ; do expand_pkg_groups; RET=$?; done  
         echo "    after group expansion packages are:  $PACKAGES"  
2006      fi      fi
2007  fi  fi
2008    for i in $pkg_list ; do
2009        PACKAGES="$PACKAGES $i"
2010    done
2011    echo     "    before group expansion packages are:$PACKAGES"
2012    if test "x${PKG_GROUPS}" != x ; then
2013        RET=1
2014        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2015        echo "    after group expansion packages are: $PACKAGES"
2016    fi
2017    
2018  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2019    echo "" > ./.tmp_pack
2020  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2021      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2022  done  done
# Line 1738  PACKAGES="$PACKAGES $ENABLE" Line 2044  PACKAGES="$PACKAGES $ENABLE"
2044  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2045      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2046      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2047          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2048          exit 1          exit 1
2049      fi      fi
2050      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
# Line 1748  for i in `grep -v "-" ./.tmp_pack | sort Line 2054  for i in `grep -v "-" ./.tmp_pack | sort
2054      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2055  done  done
2056  rm -f ./.tmp_pack  rm -f ./.tmp_pack
2057  echo "    packages are:  $PACKAGES"  echo "    packages are: $PACKAGES"
2058    
2059  #  Check availability of NetCDF and then either build the MNC template  #  Check for package MNC: if NetCDF is available, then build the MNC
2060  #  files or delete mnc from the list of available packages.  #  template files ; otherwise, delete mnc from the list of packages.
2061  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2062  RETVAL=$?  mnc_in=$?
2063  if test "x$RETVAL" = x0 ; then  if test "x$HAVE_NETCDF" != xt ; then
2064      if test "x$HAVE_NETCDF" != xt ; then      if test "x$mnc_in" = x0 ; then
2065          cat <<EOF          cat <<EOF
   
2066  *********************************************************************  *********************************************************************
2067  WARNING: the "mnc" package was enabled but tests failed to compile  WARNING: the "mnc" package was enabled but tests failed to compile
2068    NetCDF applications.  Please check that:    NetCDF applications.  Please check that:
2069    
2070    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2071    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2072         NetCDF library to link against.         NetCDF library to link against.
2073    
2074    Due to this failure, the "mnc" package is now DISABLED.    Due to this failure, the "mnc" package is now DISABLED.
2075  *********************************************************************  *********************************************************************
   
2076  EOF  EOF
2077          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2078          DISABLE="$DISABLE mnc"          DISABLE="$DISABLE mnc"
2079      else      else
2080          ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1      #  this prevent to add mnc (due to pdepend rules) if not available
2081          RETVAL=$?          DISABLE="$DISABLE mnc"
2082          if test "x${RETVAL}" = x0 ; then      fi
2083              rm -f make_mnc.errors  else
2084        # we have NetCDF, we try to build MNC template files
2085        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2086        RETVAL=$?
2087        if test "x${RETVAL}" = x0 ; then
2088            rm -f make_mnc.errors
2089        else
2090            echo "Error: problem encountered while building source files in pkg/mnc:"
2091            cat make_mnc.errors 1>&2
2092            if test "x$mnc_in" = x0 ; then
2093                exit 1
2094          else          else
2095              echo "Error: problem encountered while building source files in pkg/mnc:"              DISABLE="$DISABLE mnc"
             cat make_mnc.errors 1>&2  
             exit 1  
2096          fi          fi
2097      fi      fi
2098  fi  fi
2099    
2100  echo "  applying package dependency rules"  #  Check for package PROFILES: if NetCDF is not available,
2101  ck=  #  then delete profiles from the list of available packages.
2102  while test "x$ck" != xtt ; do  if test "x$HAVE_NETCDF" != xt ; then
2103        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2104        RETVAL=$?
2105        if test "x$RETVAL" = x0 ; then
2106            cat <<EOF
2107    *********************************************************************
2108    WARNING: the "profiles" package was enabled but tests failed to
2109      compile NetCDF applications.  Please check that:
2110    
2111      1) NetCDF is correctly installed for this compiler and
2112      2) the LIBS variable (within the "optfile") specifies the correct
2113           NetCDF library to link against.
2114    
2115      Due to this failure, the "profiles" package is now DISABLED.
2116    *********************************************************************
2117    EOF
2118            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2119            DISABLE="$DISABLE profiles"
2120        else
2121        #  this prevent to add profiles (due to pdepend rules) if not available
2122            DISABLE="$DISABLE profiles"
2123        fi
2124    fi
2125    
2126    if  test "x${PKG_DEPEND}" != x ; then
2127      echo "  applying package dependency rules"
2128      ck=
2129      while test "x$ck" != xtt ; do
2130      i=0      i=0
2131      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2132      rtot=$nname      rtot=$nname
2133      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2134    
2135          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2136          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1803  while test "x$ck" != xtt ; do Line 2142  while test "x$ck" != xtt ; do
2142                  pin="t"                  pin="t"
2143              fi              fi
2144          done          done
2145            #  or in the current $STANDARDDIRS list?
2146            for p in $STANDARDDIRS ; do
2147                if test "x$p" = "x$pname" ; then pin="t" ; fi
2148            done
2149    
2150          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2151          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 1825  while test "x$ck" != xtt ; do Line 2168  while test "x$ck" != xtt ; do
2168    
2169          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2170          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2171                #echo "   " $pname ": need to add :" $dname
2172              in_dis="f"              in_dis="f"
2173              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2174                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1845  while test "x$ck" != xtt ; do Line 2189  while test "x$ck" != xtt ; do
2189          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2190          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2191              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2192              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2193              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2194              exit 1              exit 1
2195          fi          fi
# Line 1853  while test "x$ck" != xtt ; do Line 2197  while test "x$ck" != xtt ; do
2197          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2198      done      done
2199      ck=$ck"t"      ck=$ck"t"
2200  done    done
2201  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2202    fi
2203  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2204      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2205      if test -d $adr ; then      if test -d $adr ; then
# Line 1871  done Line 2216  done
2216    
2217  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2218  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2219  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2220  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2221  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2222  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2223  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 1900  for i in $PACKAGES ; do Line 2245  for i in $PACKAGES ; do
2245  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2246    
2247  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2248      case $i in      case $i in
2249          aim_v23)          aim_v23)
2250              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2251              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
# Line 1910  for i in $PACKAGES ; do Line 2255  for i in $PACKAGES ; do
2255    
2256  done  done
2257    
2258  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2259  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2260  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2261      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2262          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 1969  fi Line 2311  fi
2311    
2312  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2313  #  compiler.  #  compiler.
2314  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2315      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2316  fi  fi
2317  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2318    touch adSrcFiles.tmp
2319  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2320      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2321      for j in $list_files ; do      for j in $list_files ; do
2322          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2323      done      done
2324  done  done
2325  if test ! "x"$FS = "x.f" ; then  if test ! "x"$FS = "x.f" ; then
2326      cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f      cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2327      mv -f ad_files_f ad_files      mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2328  fi  fi
2329    
2330  echo  echo
# Line 1993  for i in $INCLUDEDIRS ; do Line 2336  for i in $INCLUDEDIRS ; do
2336      fi      fi
2337  done  done
2338    
2339    if test ! "x$DIVA" = x ; then
2340        echo "  Creating the pseudo-MPI include directory"
2341        INCLUDES="-I./mpi_headers $INCLUDES"
2342        rm -rf ./mpi_headers
2343        mkdir -p ./mpi_headers
2344    
2345        if test "x$MPIINCLUDEDIR" = x ; then
2346            if test "x$MPIHOME" = x ; then
2347                MPIHOME='/usr'
2348            fi
2349            MPIINCLUDEDIR='$MPIHOME/include'
2350        fi
2351    
2352        if test -r $MPIINCLUDEDIR/mpif.h ; then
2353            for i in $MPI_HEADER_FILES; do
2354                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2355            done
2356    
2357            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2358        else
2359            echo " We cannot create a copy of mpif.h!"
2360    #       exit -1
2361        fi
2362    fi
2363    
2364  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2365  rm -rf .links.tmp  rm -rf .links.tmp
2366  mkdir .links.tmp  mkdir .links.tmp
2367    touch .links.tmp/foo
2368    if test ! -r ".links.tmp/foo" ; then
2369        echo
2370        echo "ERROR : something is wrong with your directory permissions or"
2371        echo "   your user file-creation mask (\"umask\") since creating a"
2372        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2373        echo "   not working.  Please try setting your umask to something"
2374        echo "   sane such as:"
2375        echo
2376        echo "      umask 0002"
2377        echo
2378        echo "   and please verify that you have the proper permissions for"
2379        echo "   creating sub-directories and then reading files created"
2380        echo "   within them."
2381        echo
2382        exit 1
2383    fi
2384    rm -f .links.tmp/foo
2385    
2386    if test "x$OPENAD" != x ; then
2387        OAD_DONT_COMPILE="/dev/null"
2388        OAD_DONT_TRANSFORM="/dev/null"
2389        OAD_KEEP_ORIGINAL="/dev/null"
2390        OAD_CB2M_FILES="/dev/null"
2391        echo "  looking for dontCompile file:  "
2392        for i in "." $MODS ; do
2393            if test -r $i"/dontCompile" ; then
2394                OAD_DONT_COMPILE=$i"/dontCompile"
2395                echo "     found $OAD_DONT_COMPILE"
2396                break
2397            fi
2398        done
2399        echo "  looking for dontTransform file:  "
2400        for i in "." $MODS ; do
2401            if test -r $i"/dontTransform" ; then
2402                OAD_DONT_TRANSFORM=$i"/dontTransform"
2403                echo "     found $OAD_DONT_TRANSFORM"
2404                break
2405            fi
2406        done
2407        echo "  looking for keepOriginal file:  "
2408        for i in "." $MODS ; do
2409            if test -r $i"/keepOriginal" ; then
2410                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2411                echo "     found $OAD_KEEP_ORIGINAL"
2412                break
2413            fi
2414        done
2415        echo "  looking for cb2mFiles:  "
2416        for i in "." $MODS ; do
2417            if test -r $i"/cb2mFiles" ; then
2418                OAD_CB2M_FILES=$i"/cb2mFiles"
2419                echo "     found $OAD_CB2M_FILES"
2420                break
2421            fi
2422        done
2423        echo "   OpenAD exceptions:  "
2424    fi
2425    
2426  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2427  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2428  printf 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2429  printf 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2430  printf 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2431  printf 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2432  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2433    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2434  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2435  for d in $alldirs ; do  for d in $alldirs ; do
2436      deplist=      deplist=
2437      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2438      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2439        if test "x$OPENAD" != x ; then
2440            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2441        fi
2442      for sf in $sfiles ; do      for sf in $sfiles ; do
2443          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2444              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2445                  ignore_f=f                  ignore_f=f
2446                  case $d/$sf in                  case $d/$sf in
2447                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2448                            ignore_f=t
2449                          ;;                          ;;
2450                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2451                            ignore_f=t
2452                          ;;                          ;;
2453                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2454                            ignore_f=t
2455                          ;;                          ;;
2456                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2457                            ignore_f=t
2458                            ;;
2459                      ./EMBEDDED_FILES.h)
2460                            ignore_f=t
2461                          ;;                          ;;
2462                    *)                    *)
2463                          #  For the local directory *ONLY*,                          #  For the local directory *ONLY*,
# Line 2035  for d in $alldirs ; do Line 2473  for d in $alldirs ; do
2473                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2474                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2475                      case $extn in                      case $extn in
2476                          F)                        F)
2477                              echo    " \\"  >> srclist.inc                          echo    " \\"  >> F77srclist.tmp
2478                              printf " $sf" >> srclist.inc                          printf " $sf" >> F77srclist.tmp
2479                              ;;                          if test "x$OPENAD" != x ; then
2480                          F90)                              basename=${sf%%.F}
2481                              echo    " \\"  >> f90srclist.inc                              isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2482                              printf " $sf" >> f90srclist.inc                              if test -z "$isAD" ; then
2483                              ;;                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2484                          c)                                  if test -z "$toBeIgnored" ; then
2485                              echo    " \\"  >> csrclist.inc                                      echo    " \\"  >> nonADF77srclist.tmp
2486                              printf " $sf" >> csrclist.inc                                      printf " $sf" >> nonADF77srclist.tmp
2487                              ;;                                  else
2488                          h)                                      echo "    not to be compiled   :  $sf"
2489                              echo    " \\"  >> hlist.inc                                  fi
2490                              printf " $sf" >> hlist.inc                              else # file is initially listed as an AD file we want to exclude it
2491                              ;;                                   # or we want to retain the untransformed version
2492                          flow)                                  notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2493                              echo    " \\"  >> ad_flow_files.inc                                  untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2494                              printf " $sf" >> ad_flow_files.inc                                  if test -n "$notToBeTransformed"; then
2495                              ;;                                      echo "    not to be transformed:  $sf"
2496                      esac                                  fi
2497                  fi                                  if test -n "$untransformedVersionToBeKept" ; then
2498                                        echo "    original to be kept  :  $sf"
2499                                    fi
2500                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2501                                        echo    " \\"  >> nonADF77srclist.tmp
2502                                        printf " $sf" >> nonADF77srclist.tmp
2503                                    fi
2504                                fi
2505                            fi
2506                            ;;
2507                        F90)
2508                            echo    " \\"  >> F90srclist.tmp
2509                            printf " $sf" >> F90srclist.tmp
2510                            ;;
2511                        c)
2512                            echo    " \\"  >> csrclist.tmp
2513                            printf " $sf" >> csrclist.tmp
2514                            ;;
2515                        h)
2516                            echo    " \\"  >> hsrclist.tmp
2517                            printf " $sf" >> hsrclist.tmp
2518                            ;;
2519                        flow)
2520                            echo    " \\"  >> ad_flow_files.tmp
2521                            printf " $sf" >> ad_flow_files.tmp
2522                            ;;
2523                       esac
2524                    fi
2525              fi              fi
2526          fi          fi
2527      done      done
2528      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2529          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2530            echo "" >> srclinks.tmp
2531          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2532          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2533          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2534    # This may happen when make thinks that a header file has to be "remade"
2535    # because a module it depends on has changed.  In this case we do nothing.
2536            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2537          fi
2538      fi      fi
2539  done  done
2540  rm -rf .links.tmp  rm -rf .links.tmp
2541  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2542  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2543  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2544  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2545  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2546    echo "" >> ad_flow_files.tmp
2547    
2548    CMDLINE=$0
2549    for xx in "$@" ; do nw=`echo $xx | wc -w`
2550        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2551                            else CMDLINE="$CMDLINE '$xx'" ; fi
2552    done
2553    
2554  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2555      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2556  fi  fi
2557  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2558  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 2083  echo "#    $MACHINE" >> $MAKEFILE Line 2560  echo "#    $MACHINE" >> $MAKEFILE
2560  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2561  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2562  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2563  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2564  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2565  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2566    
# Line 2094  EXE_SVD=$EXECUTABLE"_svd" Line 2571  EXE_SVD=$EXECUTABLE"_svd"
2571  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2572  #  #
2573  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2574  #  #
2575  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2576  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2577  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 2114  cat >>$MAKEFILE <<EOF Line 2591  cat >>$MAKEFILE <<EOF
2591  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2592    
2593  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2594  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2595  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2596  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2597  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
# Line 2132  DISABLED_PACKAGES = ${DISABLED_PACKAGES} Line 2609  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2609    
2610  # These files are created by Makefile  # These files are created by Makefile
2611  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2612  EOF  EOF
2613    
2614  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2615        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2616    else
2617        echo "EMBEDDED_FILES = " >>$MAKEFILE
2618    fi
2619    
2620  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2621  # Unix ln (link)  # Unix ln (link)
2622  LN = ${LN}  LN = ${LN}
# Line 2163  INCLUDES = ${INCLUDES} Line 2643  INCLUDES = ${INCLUDES}
2643  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2644  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2645  # Optim./debug for FC  # Optim./debug for FC
2646  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2647  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2648  # Optim./debug for FC  # Optim./debug for FC
2649  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2650  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2651    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2652  # Flags for CC  # Flags for CC
2653  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2654  # Files that should not be optimized  # Files that should not be optimized
# Line 2180  MAKEFILE=${MAKEFILE} Line 2661  MAKEFILE=${MAKEFILE}
2661    
2662  EOF  EOF
2663    
2664  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2665  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2666  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2667  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2668  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2669    cat ad_flow_files.tmp   >> $MAKEFILE
2670    
2671    rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2672    
2673  echo >> $MAKEFILE  echo >> $MAKEFILE
2674  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  
2675  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE  # add definitions for preprocessed sources
2676  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  # and note that not all systems allow case sensitive extensions
2677    # hence the $FS and $FS90 here.
2678    # for fixed format f90 files we use ff90 or FF90 resp
2679    # but these are not expected to be the original source files
2680    
2681    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2682    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2683    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2684    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2685  echo >> $MAKEFILE  echo >> $MAKEFILE
2686  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2687  echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
 rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
 rm -f ad_flow_files.inc  
2688    
2689  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2690    
2691  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2692  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2693          @echo Creating \$@ ...          @echo Creating \$@ ...
2694          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2695    
2696  depend:  depend:
2697          @make links          @make links
2698          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2699          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2700          -rm -f makedepend.out          -rm -f makedepend.out
2701    
# Line 2211  lib: libmitgcmuv.a Line 2703  lib: libmitgcmuv.a
2703    
2704  libmitgcmuv.a: \$(OBJFILES)  libmitgcmuv.a: \$(OBJFILES)
2705          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
2706            ar d   libmitgcmuv.a main.o
2707    
2708  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  obj: \$(OBJFILES)
2709    
2710  small_f: \$(F77FILES) \$(F90FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2711    
2712    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2713    
2714  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2715          @printf 'running ... '          @printf 'running ... '
2716          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2717    
2718    # remove most of the files that "make" generates
2719  clean:  clean:
2720          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2721            -rm -rf *.o
2722            -rm -rf *.$FS *.flowdir
2723            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2724    
2725    # remove most of the files that "make" and "make depend" generate
2726  Clean:  Clean:
2727          @make clean          @make clean
2728          @make cleanlinks          @make cleanlinks
2729          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2730          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2731            -rm -f genmake_warnings genmake_errors make.log
2732    
2733    # remove also the executable, files that "genmake2" generates (except Makefile)
2734    #         and output from a run (plus log files from testreport)
2735  CLEAN:  CLEAN:
2736          @make Clean          @make Clean
2737            -rm -f \$(EXECUTABLE) \$(EXE_AD) *.bak
2738            -rm -f $LOGFILE genmake_state genmake_*optfile
2739            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2740          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2741          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2742          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2743          -rm -f \$(EXECUTABLE) output.txt STD*          -rm -f *.txt STD* *diagnostics.log datetime
2744            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2745            -rm -rf mnc_test_*
2746    
 #eh3 Makefile: makefile  
2747  makefile:  makefile:
2748          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
2749  cleanlinks:  cleanlinks:
2750          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2751    
2752  # Special targets (SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2753  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2754          @echo Creating \$@ ...          @echo Creating \$@ ...
2755          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
# Line 2260  test ! "x$THISUSER" = x && echo "      -echo Line 2769  test ! "x$THISUSER" = x && echo "      -echo
2769  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2770  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2771    
2772    if test "x$EMBED_SRC" = xt ; then
2773        cat >>$MAKEFILE <<EOF
2774    
2775    decode_files.o : EMBEDDED_FILES.h
2776    
2777    ##  \$(F77_PP_SRC_FILES)
2778    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2779            @echo Creating \$@ ...
2780            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2781            -rm -f all_fF.tar.gz
2782            -gzip all_fF.tar
2783    
2784    EMBEDDED_FILES.h : all_fF.tar.gz
2785            @echo Creating \$@ ...
2786            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2787    
2788    EOF
2789    fi
2790    
2791  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2792    
2793  # The normal chain of rules is (  .F - .$FS - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )
# Line 2271  cat >>$MAKEFILE <<EOF Line 2799  cat >>$MAKEFILE <<EOF
2799          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2800  .$FS.o:  .$FS.o:
2801          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2802    .F.o:
2803            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2804  .F90.$FS90:  .F90.$FS90:
2805          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2806    .FF90.f$FS90:
2807            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2808  .$FS90.o:  .$FS90.o:
2809          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2810    .f$FS90.o:
2811            cp \$< \$(basename  \$<).f90
2812            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2813  .c.o:  .c.o:
2814          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2815    .flow.flowdir:
2816            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2817    
2818  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2819  .F.p:  .F.p:
# Line 2284  cat >>$MAKEFILE <<EOF Line 2821  cat >>$MAKEFILE <<EOF
2821  .p.$FS:  .p.$FS:
2822          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2823    
2824    EOF
2825    
2826  #=========================================  #=========================================
2827  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2828    #===  for TAMC/TAF  ======================
2829    
2830    if test "x$OPENAD" = x ; then
2831    
2832    cat >>$MAKEFILE <<EOF
2833    
2834  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2835  TAF            = ${TAF}  TAF            = ${TAF}
# Line 2300  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2844  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2844  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2845  for i in $ad_vars ; do  for i in $ad_vars ; do
2846      name=$i      name=$i
2847      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2848      eval $t1      eval $t1
2849      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2850      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2851  done  done
2852    
2853  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2854  echo >> $MAKEFILE  echo >> $MAKEFILE
2855  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2856  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2857  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2858      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2859      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2860  done  done
2861  echo >> $MAKEFILE  echo >> $MAKEFILE
2862  rm -f ad_files  rm -f adSrcFiles.tmp
2863    
2864  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2865    
2866  # ... AD ...  # ... AD ...
2867  adall: ad_taf  adall: \$(EXE_AD)
2868  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
2869  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
2870    
2871  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
2872          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2873          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2874          -rm -f ad_config.template          -rm -f ad_config.template
2875          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2876          @make \$(AD_FLOW_FILES)          @make \$(FLOFILES)
2877          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS          cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
2878    
2879  ad_taf_output.$FS: ad_input_code.$FS  ad_taf_output.$FS: ad_input_code.$FS
2880          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2881            ls -l ad_input_code_ad.$FS
2882          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2883    
2884  adtafonly:  adtafonly:
2885          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2886            ls -l ad_input_code_ad.$FS
2887          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2888    
2889  ad_taf: ad_taf_output.o \$(OBJFILES)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2890          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2891    
2892  ad_tamc_output.$FS: ad_input_code.$FS  ad_tamc_output.$FS: ad_input_code.$FS
2893          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2894          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2895    
2896  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2897          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2898    
2899  adonlyfwd:  adonlyfwd:
2900          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2901    
2902  adtrick:  adtrick:
2903          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2904    
# Line 2361  ftlall: ftl_taf Line 2907  ftlall: ftl_taf
2907  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
2908  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
2909    
2910  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2911          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2912          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2913          -rm -f ftl_config.template          -rm -f ftl_config.template
2914          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2915          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2916          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2917    
2918  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_taf_output.$FS: ftl_input_code.$FS
2919          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2920            ls -l ftl_input_code_ftl.$FS
2921          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2922    
2923  ftltafonly:  ftltafonly:
2924          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2925            ls -l ftl_input_code_ftl.$FS
2926          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2927    
2928  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2929          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2930    
2931  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
2932          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2933          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2934    
2935  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2936          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
2937    
2938  # ... SVD ...  # ... SVD ...
2939  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
# Line 2412  svd_touch: Line 2959  svd_touch:
2959          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2960          -rm -f ftl_config.template          -rm -f ftl_config.template
2961    
2962  #=========================================  EOF
2963    
2964    fi
2965    
2966    #===  for OpenAD  ========================
2967    
2968    if test "x$OPENAD" != x ; then
2969    
2970    # ============ begin OpenAD specific section ==============
2971    
2972    cat >>$MAKEFILE <<EOF
2973    
2974    # all the source files linked from the various locations:
2975    ALL_LINKED_FILES= \
2976    \$(F77_SRC_FILES) \
2977    \$(C_SRC_FILES) \
2978    \$(H_SRC_FILES) \
2979    \$(F90_SRC_FILES) \
2980    \$(SPECIAL_FILES)
2981    
2982    ifndef OPENADROOT
2983      \$(error "Error:  environment variable OPENADROOT not defined!")
2984    endif
2985    
2986    ifndef XAIFSCHEMAROOT
2987      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2988    endif
2989    
2990    ifndef XAIFBOOSTERROOT
2991      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2992    endif
2993    
2994  EOF  EOF
2995    
2996    echo "  Add the source list for common block to module conversion "
2997    echo >> $MAKEFILE
2998    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2999    for i in `cat ${OAD_CB2M_FILES}` ; do
3000      echo    " \\" >> $MAKEFILE
3001      printf " $i" >> $MAKEFILE
3002    done
3003    echo >> $MAKEFILE
3004    
3005    echo "  Add the source list for AD code generation"
3006    echo >> $MAKEFILE
3007    printf "AD_FILES = " >> $MAKEFILE
3008    for i in `cat ${OAD_CB2M_FILES}` ; do
3009      echo    " \\" >> $MAKEFILE
3010      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3011    done
3012    AD_FILES=`cat adSrcFiles.tmp`
3013    for i in $AD_FILES ; do
3014      basename=${i%%.f}
3015      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3016      if test -z "$toBeIgnored" ; then
3017        echo    " \\" >> $MAKEFILE
3018        printf " $i" >> $MAKEFILE
3019      fi
3020    done
3021    echo >> $MAKEFILE
3022    rm -f adSrcFiles.tmp
3023    
3024    cat >>$MAKEFILE <<EOF
3025    
3026    adAll: \$(EXE_AD)
3027    .PHONY: adAll
3028    
3029    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3030    
3031    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3032    
3033    .PHONY: adDepend
3034    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3035            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3036            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3037            -rm -f makedepend.out
3038    
3039    OPENAD_SUPPORT_F90_SRC_FILES = \
3040    w2f__types.F90 \
3041    OAD_active.F90 \
3042    OAD_cp.F90 \
3043    OAD_rev.F90 \
3044    OAD_tape.F90
3045    
3046    OPENAD_SUPPORT_C_SRC_FILES = \
3047    iaddr.c \
3048    timeRatio.c
3049    
3050    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3051            cat \$^ > \$@
3052    
3053    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3054            cat \$^ > \$@
3055    
3056    f95_test.out: f95_test_mods.f90 f95_test.f90
3057            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3058            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3059    
3060    # the file included below is created by the
3061    # postProcessor and its inclusion sets the
3062    # variable POSTPROCESSEDFILES
3063    # used below. Because the file is made during
3064    # make it won't be read until the second (recursive)
3065    # invocation in the rule below
3066    -include postProcess.make
3067    
3068    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)
3069    
3070    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3071    
3072    postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)
3073    ifeq (\$(MAKELEVEL),0)
3074            \$(MAKE) adAll
3075    else
3076            touch \$@
3077    endif
3078    
3079    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)
3080    ifeq (\$(MAKELEVEL),1)
3081            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3082    else
3083            touch \$@
3084    endif
3085    
3086    # makefile debug rule
3087    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3088    .PHONY: openad
3089    
3090    # create the module files
3091    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3092            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3093    
3094    # create the header files
3095    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3096            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3097    
3098    # change everybody else to use the new module files:
3099    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3100            ../OAD_support/cb2mUseModules.bash $< ${MPI}
3101    
3102    # makefile debug rule
3103    small_f: \$(CB2M_F90_PP_SRC_FILES)
3104    .PHONY: small_f
3105    
3106    ad_output.txt: \$(EXE_AD)
3107            @printf 'linking data files ... '
3108            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3109            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3110            @printf 'running ... '
3111            @./\$(EXE_AD) > \$@
3112    
3113    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3114    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3115            cat \$^ > \$@
3116    
3117    # strip all comments and blanks to reduce
3118    # the file size in order to reduce perl's memory requirements
3119    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3120            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3121    
3122    # mfef90 preprocessing
3123    # expand statement functions
3124    # expose mfef90 specific substring handling
3125    # add the w2f__types module
3126    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3127            ./mfef90 -r8 -z -F -N132 \$<
3128            mv \$<.B \$(basename \$<).B
3129            ./whirl2f -openad \$(basename \$<).B
3130            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3131    
3132    # canonicalizer
3133    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3134            ./preProcess.py --timing --r8 -H -S \$< -o \$@
3135    
3136    # F -> WHIRL
3137    # note that the canonicalized version cuts off at col 72
3138    # doing this also for string constants which is ok as long
3139    # as we are in fixed mode and cut of exactly there.
3140    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3141    # characters respectively.
3142    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3143            ./mfef90 -r8 -z -F \$<
3144            mv \$<.B \$@
3145    
3146    # WHIRL -> XAIF
3147    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3148            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3149    
3150    # XAIF -> XAIF'
3151    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3152            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3153    
3154    # XAIF' -> WHIRL'
3155    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3156            ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<
3157    
3158    # WHIRL' -> F'
3159    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3160            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3161    
3162    # insert template directives
3163    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3164            ../OAD_support/insertTemplateDir.bash \$< \$@
3165    
3166    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3167    # postprocess F'
3168    postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3169            # the target is a placeholder to signal execution of the rule
3170            touch \$@
3171            # this step also creates the file postProcess.make but we cannot
3172            # name it as the target or else make will try to remake it for
3173            # the include directive above for any rule, e.g. make clean
3174            ./postProcess.py --progress --timing --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<
3175    
3176    # setup some links
3177    %.xsd:
3178            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3179    
3180    mfef90:
3181            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3182    
3183    # link the support files:
3184    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3185            \$(LN) ../OAD_support/\$@ .
3186    
3187    whirl2xaif xaif2whirl:
3188            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3189    
3190    preProcess.py postProcess.py:
3191            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3192    
3193    whirl2f whirl2f_be:
3194            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3195    
3196    oadDriver:
3197            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3198    
3199    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)
3200    
3201    # ============ end OpenAD specific section ==============
3202    
3203    EOF
3204    
3205    fi
3206    
3207    #=========================================
3208    
3209  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3210      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3211  fi  fi
# Line 2451  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3241  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3241  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3242    
3243  # Create special header files  # Create special header files
3244  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3245  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3246      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3247  else  else
# Line 2468  if test ! -f AD_CONFIG.h ; then Line 3258  if test ! -f AD_CONFIG.h ; then
3258      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
3259  fi  fi
3260    
   
3261  #  Write the "state" for future records  #  Write the "state" for future records
3262  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3263      printf "" > genmake_state      printf "" > genmake_state
3264      for i in $gm_state ; do      for i in $gm_state ; do
3265          t1="t2=\$$i"          t1="t2=\$$i"
3266          eval $t1          eval $t1
3267          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3268      done      done
3269  fi  fi

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