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revision 1.138 by edhill, Sun Dec 4 13:57:08 2005 UTC revision 1.217 by jmc, Wed Dec 15 17:10:38 2010 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -[no]ieee | --[no]ieee
100              Do or don't use IEEE numerics.  Note that this option
101              *only* works if it is supported by the OPTFILE that
102              is being used.
103    
104        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
105              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
106              *only* works if CPP_EEOPTIONS.h allows this.
107    
108        -ignoretime | -ignore_time | --ignoretime | --ignore_time
109              Ignore all the "wall clock" routines entirely.  This will
110              not in any way hurt the model results -- it simply means
111              that the code that checks how long the model spends in
112              various routines will give junk values.
113    
114        -ts | --ts
115              Produce timing information per timestep
116        -papis | --papis
117              Produce summary MFlop/s (and IPC) with PAPI per timestep
118        -pcls | --pcls
119              Produce summary MFlop/s etc. with PCL per timestep
120        -foolad | --foolad
121              Fool the AD code generator
122        -papi | --papi
123              Performance analysis with PAPI
124        -pcl | --pcl
125              Performance analysis with PCL
126        -hpmt | --hpmt
127              Performance analysis with the HPM Toolkit
128    
129        -gsl | --gsl
130              Use GSL to control floating point rounding and precision
131        -devel | --devel
132              Add additional warning and debugging flags for development
133    
134        -mpi | --mpi
135              Include MPI header files and link to MPI libraries
136        -mpi=PATH | --mpi=PATH
137              Include MPI header files and link to MPI libraries using MPI_ROOT
138              set to PATH. i.e. Include files from \$PATH/include, link to libraries
139              from \$PATH/lib and use binaries from \$PATH/bin.
140    
141        -omp | --omp
142              Activate OpenMP code + use Compiler option OMPFLAG
143        -omp=OMPFLAG | --omp=OMPFLAG
144              Activate OpenMP code + use Compiler option OMPFLAG
145    
146        -es | --es | -embed-source | --embed-source
147              Embed a tarball containing the full source code
148              (including the Makefile, etc.) used to build the
149              executable [off by default]
150    
151        -ds | --ds
152              Report genmake internal variables status (DUMPSTATE)
153              to file "genmake_state" (for debug purpose)
154    
155      While it is most often a single word, the "NAME" variables specified
156      above can in many cases be a space-delimited string such as:
157    
158        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
159        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
160        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
161    
162      which, depending upon your shell, may need to be single-quoted.
163    
164      For more detailed genmake documentation, please see:
165    
166        http://mitgcm.org/public/devel_HOWTO/
167    
168    EOF
169    
170        exit 1
171    }
172    
173  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
174  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
175  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
176      cpp_options=$1      cpp_options=$1
177      pkg=$2      pkg=$2
178      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
179      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
180      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
181      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
182        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
183        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
184        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
185        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
186  }  }
187    
188  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
189  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
190  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
191      cpp_options=$1      cpp_options=$1
192      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
193      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
194      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
195      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
196        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
197        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
198        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
199        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
200  }  }
201    
202  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 39  test_for_string_in_file() { Line 209  test_for_string_in_file() {
209      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
210          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
211          grep -i "$strng" $file          grep -i "$strng" $file
212          return 1          exit 99
213      fi      fi
214      return 0      return 0
215  }  }
# Line 48  test_for_string_in_file() { Line 218  test_for_string_in_file() {
218  # the package list.  # the package list.
219  expand_pkg_groups() {  expand_pkg_groups() {
220      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
221      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
222          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
223          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
# Line 59  expand_pkg_groups() { Line 228  expand_pkg_groups() {
228              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
229                  matched=1                  matched=1
230                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
231                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
232                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
233              else              else
234                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
# Line 102  EOF Line 271  EOF
271              check_for_broken_Ff              check_for_broken_Ff
272          else          else
273              cat <<EOF 2>&1              cat <<EOF 2>&1
274  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
275    (fails the "cp" test) and this program cannot find a suitable    (fails the "cp" test) and this program cannot find a suitable
276    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
277    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
278    
279  EOF  EOF
# Line 138  EOF Line 307  EOF
307              check_for_broken_Ff              check_for_broken_Ff
308          else          else
309              cat <<EOF 2>&1              cat <<EOF 2>&1
310  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
311    (fails the "make/ln" test) and this program cannot find a suitable    (fails the "make/ln" test) and this program cannot find a suitable
312    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
313    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
314    
315  EOF  EOF
# Line 157  EOF Line 326  EOF
326      return      return
327  }  }
328    
   
329  look_for_makedepend()  {  look_for_makedepend()  {
330    
331      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
# Line 186  look_for_makedepend()  { Line 354  look_for_makedepend()  {
354          cat <<EOF >> $MAKEFILE          cat <<EOF >> $MAKEFILE
355  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
356  #  #
357  #   Some "makedepend" implementations will die if they cannot  #   Some "makedepend" implementations will die if they cannot
358  #   find a Makefile -- so this file is here to gives them an  #   find a Makefile -- so this file is here to gives them an
359  #   empty one to find and parse.  #   empty one to find and parse.
360  EOF  EOF
361          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
# Line 204  EOF Line 372  EOF
372              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
373          else          else
374              echo "    a system-default makedepend was not found."              echo "    a system-default makedepend was not found."
               
375              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
376              build_cyrus_makedepend              build_cyrus_makedepend
377              RETVAL=$?              RETVAL=$?
# Line 223  EOF Line 390  EOF
390      fi      fi
391  }  }
392    
   
393  build_cyrus_makedepend()  {  build_cyrus_makedepend()  {
394      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
395      (      (
# Line 248  build_cyrus_makedepend()  { Line 414  build_cyrus_makedepend()  {
414      fi      fi
415  }  }
416    
417  # Guess possible config options for this host  build_embed_encode()
418  find_possible_configs()  {  {
419        printf "  building the embed-encode utility...  "
420      tmp1=`uname`"_"`uname -m`      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
421      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`          if test ! -d "$ROOTDIR/tools/embed_encode" ; then
422      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`              echo
423      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
424      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`              echo
425      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`              EMBED_SRC=f
426      PLATFORM=$tmp3              return 1
427      echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32          fi
428      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`          clist="cc gcc c89 $CC"
429      echo "  The platform appears to be:  $PLATFORM"          for ic in $clist ; do
430                    comm="$ic -o encode_files encode_files.c"
431      echo "test" > test              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
432      ln -s ./test link              RETVAL=$?
433      RETVAL=$?              if test "x$RETVAL" = x0 ; then
434      if test "x${RETVAL}" = x0 ; then                  echo "OK"
435          LN="ln -s"                  DEFINES="$DEFINES -DHAVE_EMBED_SRC"
436      else                  return 0
437          echo "Error: \"ln -s\" does not appear to work on this system!"              fi
438          echo "  For help, please contact <MITgcm-support@mitgcm.org>."          done
439          exit 1          echo
440      fi          echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
441      rm -f test link          echo "      so it has been disabled"
442            echo
443      if test "x$CPP" = x ; then          EMBED_SRC=f
444          CPP="cpp -traditional -P"          return 1
445      fi      fi
446        echo "OK"
447        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
448    }
449    
450      look_for_makedepend  #  look for possible C compilers
451    look_for_C_compilers() {
452      #================================================================      echo >> $LOGFILE
453      #  look for possible C compilers      echo "running: look_for_C_compilers()" >> $LOGFILE
454      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"      rm -f ./genmake_hello.c  ./genmake_hello
455      p_CC=      cat >> genmake_hello.c << EOF
     for c in $tmp ; do  
         rm -f ./genmake_hello.c  ./genmake_hello  
         cat >> genmake_hello.c << EOF  
456  #include <stdio.h>  #include <stdio.h>
457  int main(int argc, char **argv) {  int main(int argc, char **argv) {
458    printf("Hello!\n");    printf("Hello!\n");
459    return 0;    return 0;
460  }  }
461  EOF  EOF
462          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
463        p_CC=
464        for c in $tmp ; do
465            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
466            echo $COMM >> $LOGFILE
467            $COMM >> $LOGFILE 2>&1
468          RETVAL=$?          RETVAL=$?
469          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
470                echo " $c test successful" >> $LOGFILE
471              p_CC="$p_CC $c"              p_CC="$p_CC $c"
472          fi          fi
473      done      done
# Line 311  Error: No C compilers were found in your Line 483  Error: No C compilers were found in your
483  EOF  EOF
484          exit 1          exit 1
485      else      else
486          echo "  The possible C compilers found in your path are:"          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
         echo "   "$p_CC  
487          if test "x$CC" = x ; then          if test "x$CC" = x ; then
488              CC=`echo $p_CC | $AWK '{print $1}'`              CC=`echo $p_CC | $AWK '{print $1}'`
489              echo "  Setting C compiler to: "$CC              echo "  Setting C compiler to: "$CC
490          fi          fi
491      fi      fi
492        echo " --> set CC='$CC'" >> $LOGFILE
493    }
494    
495    # Guess possible config options for this host
496    find_possible_optfile()  {
497    
498        echo >> $LOGFILE
499        echo "running: find_possible_optfile()" >> $LOGFILE
500        tmp1=`uname`"_"`uname -m`
501        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
502        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
503        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
504        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
505        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
506        PLATFORM=$tmp3
507        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
508        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
509        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
510    
511      #================================================================      #================================================================
512      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
513      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 gfortran"      echo "  look for possible FORTRAN compilers" >> $LOGFILE
514        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
515      p_FC=      p_FC=
516      for c in $tmp ; do      rm -f ./genmake_hello.f
517          rm -f ./hello.f ./hello      cat >> genmake_hello.f <<EOF
         cat >> hello.f <<EOF  
518        program hello        program hello
519        do i=1,3        do i=1,3
520          print *, 'hello world : ', i          print *, 'hello world : ', i
521        enddo        enddo
522        end        end
523  EOF  EOF
524          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
525            COMM="$f -o genmake_hello genmake_hello.f"
526            echo $COMM >> $LOGFILE
527            $COMM >> $LOGFILE 2>&1
528          RETVAL=$?          RETVAL=$?
529          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
530              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
531                p_FC="$p_FC $f"
532          fi          fi
533      done      done
534      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
535      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
536          cat 1>&2 <<EOF          cat 1>&2 <<EOF
537    
# Line 351  Error: No Fortran compilers were found i Line 544  Error: No Fortran compilers were found i
544  EOF  EOF
545          exit 1          exit 1
546      else      else
547          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
548      fi      fi
549    
550      #  Use the first of the compilers found in the current PATH      #  Use the first of the compilers found in the current PATH
# Line 361  EOF Line 553  EOF
553          for i in $p_FC ; do          for i in $p_FC ; do
554              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
555              if test -r $OPTFILE ; then              if test -r $OPTFILE ; then
556                  echo "  Setting OPTFILE to: "$OPTFILE                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
557                  break                  break
558              fi              fi
559          done          done
# Line 373  EOF Line 565  EOF
565               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
566          fi          fi
567      fi      fi
568  #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #   for i in $p_FC ; do  
 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
 #if test -r $p_OF ; then  
 #    OPTFILE=$p_OF  
 #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #    break  
 #fi  
 #   done  
569      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
570          cat 1>&2 <<EOF          cat 1>&2 <<EOF
571    
# Line 399  Error: No options file was found in:  $R Line 581  Error: No options file was found in:  $R
581  EOF  EOF
582          exit 1          exit 1
583      fi      fi
584        
585  #     # look for possible MPI libraries  #     # look for possible MPI libraries
586  #     mpi_libs=  #     mpi_libs=
587  #     mpi_fort=`which mpif77 2>/dev/null`  #     mpi_fort=`which mpif77 2>/dev/null`
# Line 418  EOF Line 600  EOF
600  #       if test "x${RETVAL}" = x0 ; then  #       if test "x${RETVAL}" = x0 ; then
601  #           a=`cat out`  #           a=`cat out`
602  #           for i in $a ; do  #           for i in $a ; do
603  #               case $i in  #               case $i in
604  #                   -*)  #                   -*)
605  #                       mpi_libs="$mpi_libs $i" ;;  #                       mpi_libs="$mpi_libs $i" ;;
606  #               esac  #               esac
# Line 428  EOF Line 610  EOF
610  #       fi  #       fi
611  #       rm -f test.f out  #       rm -f test.f out
612  #     fi  #     fi
   
613  }  }
614    
615  #  Parse the package dependency information  #  Parse the package dependency information
# Line 437  get_pdepend_list()  { Line 618  get_pdepend_list()  {
618      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
619      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
620      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
621          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
622          > ./.pd_tmp          > ./.pd_tmp
623        RETVAL=$?
624        if test ! "x${RETVAL}" = x0 ; then
625          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
626          exit 1
627        fi
628      . ./.pd_tmp      . ./.pd_tmp
629      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
     printf "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME  
       -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME  
           Use "NAME" as the adoptfile.  By default, the file at  
           "tools/adjoint_options/adjoint_default" will be used.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -cc NAME | --cc NAME | -cc=NAME | --cc=NAME  
           Use "NAME" as the C compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as gcc, c89, cc, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -ts | --ts  
           Produce timing information per timestep  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from \$PATH/include, link to libraries  
           from \$PATH/lib and use binaries from \$PATH/bin.  
   
     -bash NAME  
           Explicitly specify the Bourne or BASH shell to use  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/devel_HOWTO/  
   
 EOF  
   
     exit 1  
630  }  }
631    
632  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
# Line 573  get_fortran_c_namemangling()  { Line 636  get_fortran_c_namemangling()  {
636      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
637          return 0          return 0
638      fi      fi
639        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
640    
641      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
642        
643      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
644  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
645  EOF  EOF
646      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
647        echo ' '$COMM >> $LOGFILE
648        $COMM >> $LOGFILE 2>&1
649      RETVAL=$?      RETVAL=$?
650      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
651          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
652          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
653    
654  WARNING: C test compile fails   WARNING: C test compile fails
655  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
656  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
657  EOF  EOF
658          return 1          return 1
659      fi      fi
# Line 595  EOF Line 661  EOF
661      RETVAL=$?      RETVAL=$?
662      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
663          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
664          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
665    
666  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
667  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
668  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
669  EOF  EOF
670          return 1          return 1
671      fi      fi
# Line 609  EOF Line 675  EOF
675        call tsub( string )        call tsub( string )
676        end        end
677  EOF  EOF
678      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
679        echo ' '$COMM >> $LOGFILE
680        $COMM >> $LOGFILE 2>&1
681      RETVAL=$?      RETVAL=$?
682      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
683          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
684          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
685    
686  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
687  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
688  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
689  EOF  EOF
690          return 1          return 1
691      fi      fi
# Line 625  EOF Line 693  EOF
693      RETVAL=$?      RETVAL=$?
694      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
695          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
696          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
697    
698  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
699  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
700  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
701  EOF  EOF
702          return 1          return 1
703      fi      fi
# Line 655  EOF Line 723  EOF
723    
724      #  cleanup the testing files      #  cleanup the testing files
725      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
726    
727        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
728    }
729    
730  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
731        echo >> $LOGFILE
732        echo "running: check_HAVE_CLOC()" >> $LOGFILE
733      get_fortran_c_namemangling      get_fortran_c_namemangling
734      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
735  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 675  void FC_NAMEMANGLE(cloc) ( double *curti Line 746  void FC_NAMEMANGLE(cloc) ( double *curti
746   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
747  }  }
748  EOF  EOF
749      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
750        echo $COMM >> $LOGFILE
751        $COMM >> $LOGFILE 2>&1
752      RET_C=$?      RET_C=$?
753      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
754        program hello        program hello
# Line 685  EOF Line 758  EOF
758        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
759        end        end
760  EOF  EOF
761      $FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
762        echo $COMM >> $LOGFILE
763        $COMM >> $LOGFILE 2>&1
764      RET_F=$?      RET_F=$?
765      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
766      RETVAL=$?      RETVAL=$?
767      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
768          HAVE_CLOC=t          HAVE_CLOC=t
769          DEFINES="$DEFINES -DHAVE_CLOC"          DEFINES="$DEFINES -DHAVE_CLOC"
770      fi      fi
771      rm -f genmake_tc*      rm -f genmake_tc*
772        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
773  }  }
774    
   
775  check_HAVE_SIGREG()  {  check_HAVE_SIGREG()  {
776        if test ! "x$HAVE_SIGREG" = x ; then
777            return
778        fi
779        echo >> $LOGFILE
780        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
781      get_fortran_c_namemangling      get_fortran_c_namemangling
782      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
783  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 729  void FC_NAMEMANGLE(sigreg) (int * aip) Line 809  void FC_NAMEMANGLE(sigreg) (int * aip)
809      return;      return;
810  }  }
811  EOF  EOF
812      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
813        echo $COMM >> $LOGFILE
814        $COMM >> $LOGFILE 2>&1
815      RET_C=$?      RET_C=$?
816      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
817        program hello        program hello
# Line 739  EOF Line 821  EOF
821        call sigreg(anint)        call sigreg(anint)
822        end        end
823  EOF  EOF
824      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SIGREG()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
825      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
826      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
827      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
828      RETVAL=$?      RETVAL=$?
829      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
830          HAVE_SIGREG=t          HAVE_SIGREG=t
831          DEFINES="$DEFINES -DHAVE_SIGREG"          DEFINES="$DEFINES -DHAVE_SIGREG"
832      fi      fi
833      rm -f genmake_tc*      rm -f genmake_tc*
834        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
835  }  }
836    
   
837  check_HAVE_SETRLSTK()  {  check_HAVE_SETRLSTK()  {
838        if test "x$HAVE_SETRLSTK" = xt ; then
839            DEFINES="$DEFINES -DHAVE_SETRLSTK"
840            return
841        fi  
842        if test ! "x$HAVE_SETRLSTK" = x ; then
843            return
844        fi
845        echo >> $LOGFILE
846        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
847      get_fortran_c_namemangling      get_fortran_c_namemangling
848      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
849  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 770  void FC_NAMEMANGLE(setrlstk) () Line 859  void FC_NAMEMANGLE(setrlstk) ()
859      return;      return;
860  }  }
861  EOF  EOF
862      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
863        echo $COMM >> $LOGFILE
864        $COMM >> $LOGFILE 2>&1
865      RET_C=$?      RET_C=$?
866      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
867        program hello        program hello
# Line 778  EOF Line 869  EOF
869        call setrlstk()        call setrlstk()
870        end        end
871  EOF  EOF
872      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
873      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
874      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
875      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
876      RETVAL=$?      RETVAL=$?
877      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
878          HAVE_SETRLSTK=t          HAVE_SETRLSTK=t
879          DEFINES="$DEFINES -DHAVE_SETRLSTK"          DEFINES="$DEFINES -DHAVE_SETRLSTK"
880      fi      fi
881      rm -f genmake_tc*      rm -f genmake_tc*
882        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
883  }  }
884    
   
885  check_HAVE_STAT()  {  check_HAVE_STAT()  {
886        echo >> $LOGFILE
887        echo "running: check_HAVE_STAT()" >> $LOGFILE
888      get_fortran_c_namemangling      get_fortran_c_namemangling
889      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
890  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 814  void FC_NAMEMANGLE(tfsize) ( int *nbyte Line 905  void FC_NAMEMANGLE(tfsize) ( int *nbyte
905          *nbyte = -1;          *nbyte = -1;
906  }  }
907  EOF  EOF
908      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
909        echo $COMM >> $LOGFILE
910        $COMM >> genmake_tc.log 2>&1
911      RET_C=$?      RET_C=$?
912      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
913        program hello        program hello
# Line 823  EOF Line 916  EOF
916        print *," HELLO WORLD", nbyte        print *," HELLO WORLD", nbyte
917        end        end
918  EOF  EOF
919      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_STAT()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
920      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
921      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
922      $COMM >> genmake_tc.log 2>&1      $COMM >> genmake_tc.log 2>&1
923      RETVAL=$?      RETVAL=$?
924      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
# Line 835  EOF Line 926  EOF
926          DEFINES="$DEFINES -DHAVE_STAT"          DEFINES="$DEFINES -DHAVE_STAT"
927      fi      fi
928      rm -f genmake_tc*      rm -f genmake_tc*
929        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
930  }  }
931    
   
932  check_netcdf_libs()  {  check_netcdf_libs()  {
933      if test ! "x$SKIP_NETCDF_CHECK" = x ; then      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
934          return          return
935      fi      fi
936      echo >> genmake_warnings      echo >> $LOGFILE
937      echo "running: check_netcdf_libs()" >> genmake_warnings      echo "running: check_netcdf_libs()" >> $LOGFILE
938      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
939        program fgennc        program fgennc
940  #include "netcdf.inc"  #include "netcdf.inc"
# Line 861  EOF Line 952  EOF
952        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
953        end        end
954  EOF  EOF
955      echo "===  genmake_tnc.F  ===" > genmake_tnc.log      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
956      cat genmake_tnc.F >> genmake_tnc.log      cat genmake_tnc.F >> genmake_tnc.log
957      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log      echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
958      RET_CPP=f      RET_CPP=f
959      COMM="$CPP $DEFINES $INCLUDES genmake_tnc.F"      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
960      echo "$COMM" >> genmake_tnc.log      echo "$COMM" >> genmake_tnc.log
961      $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t      eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
962      if test "x$RET_CPP" = xf ; then      if test "x$RET_CPP" = xf ; then
963          echo "  WARNING: CPP failed to pre-process the netcdf test." \          echo "  WARNING: CPP failed to pre-process the netcdf test." \
964              >> genmake_tnc.log              >> genmake_tnc.log
# Line 875  EOF Line 966  EOF
966              >> genmake_tnc.log              >> genmake_tnc.log
967      fi      fi
968      echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log      echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
969      echo "  &&  $LINK -o genmake_tnc.o $LIBS" >> genmake_tnc.log      echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
970      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
971          &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
972      RET_COMPILE=$?      RET_COMPILE=$?
973      cat genmake_tnc.log >> genmake_warnings      cat genmake_tnc.log >> $LOGFILE
974    
975      #EH3  Remove test program execution for machines that either disallow      #EH3  Remove test program execution for machines that either disallow
976      #EH3  execution or cannot support it (eg. cross-compilers)      #EH3  execution or cannot support it (eg. cross-compilers)
# Line 890  EOF Line 981  EOF
981    
982      if test "x$RET_COMPILE" = x0 ; then      if test "x$RET_COMPILE" = x0 ; then
983          HAVE_NETCDF=t          HAVE_NETCDF=t
984            echo "check_netcdf: successful" >> $LOGFILE
985      else      else
986          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
987          echo "try again with added '-lnetcdf'" > genmake_tnc.log          echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
988          echo "$CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS \ " >> genmake_tnc.log          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
989          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
990          echo " &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
991          $CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS 2>/dev/null  \          cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
992              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
993              &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
994          RET_COMPILE=$?          RET_COMPILE=$?
995          cat genmake_tnc.log >> genmake_warnings          echo >> $LOGFILE
996            cat genmake_tnc.log >> $LOGFILE
997          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
998              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
999              HAVE_NETCDF=t              HAVE_NETCDF=t
1000                echo "check_netcdf: successful" >> $LOGFILE
1001            else
1002            # try again with "-lnetcdff" added to the libs
1003                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1004                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1005                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1006                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1007                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1008                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1009                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1010                RET_COMPILE=$?
1011                echo >> $LOGFILE
1012                cat genmake_tnc.log >> $LOGFILE
1013                if test "x$RET_COMPILE" = x0 ; then
1014                    LIBS="$LIBS -lnetcdff -lnetcdf"
1015                    HAVE_NETCDF=t
1016                    echo "check_netcdf: successful" >> $LOGFILE
1017                fi
1018          fi          fi
1019      fi      fi
1020      rm -f genmake_tnc*      rm -f genmake_tnc*
1021        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1022  }  }
1023    
1024    
   
1025  ###############################################################################  ###############################################################################
1026  #   Sequential part of script starts here  #   Sequential part of script starts here
1027  ###############################################################################  ###############################################################################
# Line 932  ENABLE= Line 1043  ENABLE=
1043  DISABLE=  DISABLE=
1044  # MAKEFILE=  # MAKEFILE=
1045  # MAKEDEPEND=  # MAKEDEPEND=
1046  PDEPEND=  PKG_DEPEND=
1047  DUMPSTATE=t  PKG_GROUPS=
1048  PDEFAULT=  DUMPSTATE=f
1049  OPTFILE=  OPTFILE=
1050  INCLUDES="-I. $INCLUDES"  INCLUDES="-I. $INCLUDES"
1051  FFLAGS=  FFLAGS=
1052  FOPTIM=  FOPTIM=
1053    FEXTRAFLAGS=
1054    USE_EXTENDED_SRC=
1055    EXTENDED_SRC_FLAG=
1056    GET_FC_VERSION=
1057  CFLAGS=  CFLAGS=
1058  KFLAGS1=  KFLAGS1=
1059  KFLAGS2=  KFLAGS2=
# Line 949  NOOPTFILES= Line 1064  NOOPTFILES=
1064  NOOPTFLAGS=  NOOPTFLAGS=
1065  MPI=  MPI=
1066  MPIPATH=  MPIPATH=
1067    OMP=
1068    OMPFLAG=
1069    USE_R4=
1070  TS=  TS=
1071    PAPIS=
1072    PCLS=
1073    FOOLAD=
1074    PAPI=
1075    PCL=
1076    HPMT=
1077    GSL=
1078    DEVEL=
1079  HAVE_TEST_L=  HAVE_TEST_L=
1080    
1081  # DEFINES checked by test compilation or command-line  # DEFINES checked by test compilation or command-line
# Line 957  HAVE_SYSTEM= Line 1083  HAVE_SYSTEM=
1083  HAVE_FDATE=  HAVE_FDATE=
1084  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1085  HAVE_CLOC=  HAVE_CLOC=
1086  HAVE_SETRLSTK=  # HAVE_SETRLSTK=
1087  HAVE_STAT=  HAVE_STAT=
1088  HAVE_NETCDF=  HAVE_NETCDF=
1089  HAVE_ETIME=  HAVE_ETIME=
# Line 974  BASH= Line 1100  BASH=
1100  PWD=`pwd`  PWD=`pwd`
1101  test "x$MAKE" = x  &&  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1102  test "x$AWK" = x   &&  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1103    EMBED_SRC=
1104  THISHOST=`hostname`  THISHOST=`hostname`
1105  THISCWD=`pwd`  THISCWD=`pwd`
1106  THISDATE=`date`  THISDATE=`date`
# Line 1004  FTL_TAF_FLAGS= Line 1131  FTL_TAF_FLAGS=
1131  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1132  TAMC_EXTRA=  TAMC_EXTRA=
1133    
   
1134  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1135  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS MAKEFILE MAKEDEPEND PLATFORM ROOTDIR MODS DISABLE ENABLE"
1136  gm_s2="FC CPP IEEE TS MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CC IEEE USE_R4 TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"
1137    
1138  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1139  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1140  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1141  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD THISHOST THISUSER THISDATE THISVER MACHINE"
1142  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1143  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s7="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME"
1144    
1145  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1146  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 1028  cat <<EOF Line 1154  cat <<EOF
1154    
1155  GENMAKE :  GENMAKE :
1156    
1157  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1158  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1159    or for more detail see the Developer's HOWTO manual at:
1160    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1161    
1162  EOF  EOF
1163    
1164    LOGFILE="genmake.log"
1165    #- clean-up previous genmake logfiles:
1166    rm -f genmake_state genmake_*optfile $LOGFILE
1167    
1168  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1169  gm_local="genmake_local"  gm_local="genmake_local"
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
1170  printf "  getting local config information:  "  printf "  getting local config information:  "
1171  if test -f $gm_local ; then  if test -f $gm_local ; then
1172      echo "using $gm_local"      echo "using $gm_local"
# Line 1054  else Line 1178  else
1178  fi  fi
1179    
1180  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1181  #parse_options  #parse_options
1182  ac_prev=  ac_prev=
1183  for ac_option in "$@" ; do  for ac_option in "$@" ; do
# Line 1075  for ac_option in "$@" ; do Line 1190  for ac_option in "$@" ; do
1190          ac_prev=          ac_prev=
1191          continue          continue
1192      fi      fi
1193        
1194      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1195        
1196      case $ac_option in      case $ac_option in
1197                    
1198          -help | --help | -h | --h)          -help | --help | -h | --h)
# Line 1096  for ac_option in "$@" ; do Line 1211  for ac_option in "$@" ; do
1211              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1212                    
1213          -pdepend | --pdepend)          -pdepend | --pdepend)
1214              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1215          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1216              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1217                    
1218          -pdefault | --pdefault)          -pgroups | --pgroups)
1219              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1220          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1221              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1222                    
1223          -make | --make | -m | --m)          -make | --make | -m | --m)
1224              ac_prev=MAKE ;;              ac_prev=MAKE ;;
# Line 1187  for ac_option in "$@" ; do Line 1302  for ac_option in "$@" ; do
1302          -noieee | --noieee)          -noieee | --noieee)
1303              IEEE= ;;              IEEE= ;;
1304    
1305            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1306                USE_R4=true ;;
1307    
1308          -ts | --ts)          -ts | --ts)
1309              TS=true ;;              TS=true ;;
1310            -papis | --papis)
1311                PAPIS=true ;;
1312            -pcls | --pcls)
1313                PCLS=true ;;
1314            -foolad | --foolad)
1315                FOOLAD=true ;;
1316            -papi | --papi)
1317                PAPI=true ;;
1318            -pcl | --pcl)
1319                PCL=true ;;
1320            -hpmt | --hpmt)
1321                HPMT=true ;;
1322    
1323            -gsl | --gsl)
1324                GSL=true ;;
1325    
1326            -devel | --devel)
1327                DEVEL=true ;;
1328    
1329          -mpi | --mpi)          -mpi | --mpi)
1330              MPI=true ;;              MPI=true ;;
# Line 1196  for ac_option in "$@" ; do Line 1332  for ac_option in "$@" ; do
1332              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1333              MPI=true ;;              MPI=true ;;
1334                    
1335  #       -jam | --jam)          -omp | --omp)
1336  #           JAM=1 ;;              OMP=true ;;
1337  #       -nojam | --nojam)          -omp=* | --omp=*)
1338  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1339                OMP=true ;;
1340                    
1341          -ds | --ds)          -ds | --ds)
1342              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 1217  for ac_option in "$@" ; do Line 1354  for ac_option in "$@" ; do
1354          -ignoretime | -ignore_time | --ignoretime | --ignore_time)          -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1355              IGNORE_TIME="-DIGNORE_TIME" ;;              IGNORE_TIME="-DIGNORE_TIME" ;;
1356    
1357            -es | --es | -embed-source | --embed-source)
1358                EMBED_SRC=t ;;
1359    
1360          -*)          -*)
1361              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1362              usage              usage
# Line 1228  for ac_option in "$@" ; do Line 1368  for ac_option in "$@" ; do
1368              ;;              ;;
1369                    
1370      esac      esac
       
 done  
1371    
1372    done
1373    
1374  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1375      echo      echo
1376      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1377      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1378      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1379      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/devel_HOWTO/"
1380        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1381        echo "WARNING: ignore \"./.genmakerc\" and continue."
1382      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1383  fi  fi
1384    
1385  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
1386  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1387      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1388      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1389          ROOTDIR=".."          ROOTDIR=".."
1390      else      else
1391          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
# Line 1272  if test ! -d ${ROOTDIR} ; then Line 1410  if test ! -d ${ROOTDIR} ; then
1410  fi  fi
1411    
1412  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1413  if test -f "${ROOTDIR}/doc/tag-index" ; then  version_file="${ROOTDIR}/doc/tag-index"
1414      THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`  if test -f $version_file ; then
1415        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1416    #-  remove ./BUILD_INFO.h file if older than version_file
1417        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1418            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1419            rm -f ./BUILD_INFO.h
1420        fi
1421  fi  fi
1422    
1423  if test "x$MAKEFILE" = x ; then  if test "x$MAKEFILE" = x ; then
# Line 1285  if test "x${OPTFILE}" = x ; then Line 1429  if test "x${OPTFILE}" = x ; then
1429      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1430          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1431          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1432          find_possible_configs          find_possible_optfile
1433      else      else
1434          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1435      fi      fi
# Line 1300  if test "x$OPTFILE" != xNONE ; then Line 1444  if test "x$OPTFILE" != xNONE ; then
1444              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1445              exit 1              exit 1
1446          fi          fi
1447          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1448              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1449          fi          fi
1450      else      else
# Line 1327  if test "x${AD_OPTFILE}" != xNONE ; then Line 1471  if test "x${AD_OPTFILE}" != xNONE ; then
1471              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1472              exit 1              exit 1
1473          fi          fi
1474          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1475              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1476          fi          fi
1477      else      else
# Line 1355  Error: no Fortran compiler: please speci Line 1499  Error: no Fortran compiler: please speci
1499  EOF  EOF
1500      exit 1      exit 1
1501  fi  fi
1502    if test "x$GET_FC_VERSION" != x ; then
1503      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1504      $FC $GET_FC_VERSION >> $LOGFILE 2>&1
1505      echo "<-- compiler version ----" >> $LOGFILE
1506    fi
1507    
1508  if test "x$CC" = x ; then  if test "x$CC" = x ; then
1509      CC=cc      look_for_C_compilers
 #     cat <<EOF 1>&2  
 # Error: no C compiler: please specify using one of the following:  
 #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"  
 #   2) the "-cc=XXX" command-line option  
 #   3) the "./genmake_local" file  
 # EOF  
 #     exit 1  
1510  fi  fi
1511    
1512  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1513      LINK=$FC      LINK=$FC
1514  fi  fi
# Line 1372  if test "x$MAKE" = x ; then Line 1516  if test "x$MAKE" = x ; then
1516      MAKE="make"      MAKE="make"
1517  fi  fi
1518  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1519      CPP=cpp      CPP="cpp -traditional -P"
1520  fi  fi
1521  #EH3 === UGLY ===  #EH3 === UGLY ===
1522  #  The following is an ugly little hack to check for $CPP in /lib/ and  #  The following is an ugly little hack to check for $CPP in /lib/ and
# Line 1399  EOF Line 1543  EOF
1543  else  else
1544      rm -f test_cpp      rm -f test_cpp
1545  fi  fi
1546    
1547  look_for_makedepend  look_for_makedepend
1548    
1549    #  Check that soft-link command is set and usable
1550  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1551      LN="ln -s"      LN="ln -s"
1552  fi  fi
# Line 1409  RETVAL=$? Line 1556  RETVAL=$?
1556  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1557      cat <<EOF 1>&2      cat <<EOF 1>&2
1558    
1559  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1560    command in the optfile.    command in the optfile.
1561    
1562  EOF  EOF
# Line 1429  if test ! "x$MPI" = x ; then Line 1576  if test ! "x$MPI" = x ; then
1576        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1577        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1578  fi  fi
1579    if test ! "x$OMP" = x ; then
1580          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1581          FFLAGS="$FFLAGS $OMPFLAG"
1582          F90FLAGS="$F90FLAGS $OMPFLAG"
1583          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1584    fi
1585    
1586    if test ! "x$USE_R4" = x ; then
1587          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1588          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1589    fi
1590    
1591  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1592        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
1593        DEFINES="$DEFINES -DTIME_PER_TIMESTEP"        if test ! "x$FOOLAD" = x ; then
1594                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1595          else
1596                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1597          fi
1598          PACKAGES="$PACKAGES showflops"
1599    fi
1600    if test ! "x$PAPIS" = x ; then
1601          echo "  Turning on PAPI flop summary per timestep"
1602          echo "  Please make sure PAPIINC, PAPILIB are defined"
1603          if test ! "x$FOOLAD" = x ; then
1604                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1605          else
1606                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1607          fi
1608          INCLUDES="$INCLUDES $PAPIINC"
1609          LIBS="$LIBS $PAPILIB"
1610          PACKAGES="$PACKAGES showflops"
1611    fi
1612    if test ! "x$PCLS" = x ; then
1613          echo "  Turning on PCL counter summary per timestep"
1614          echo "  Please make sure PCLINC, PCLLIB are defined"
1615          if test ! "x$FOOLAD" = x ; then
1616                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1617          else
1618                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1619          fi
1620          INCLUDES="$INCLUDES $PCLINC"
1621          LIBS="$LIBS $PCLLIB"
1622          PACKAGES="$PACKAGES showflops"
1623    fi
1624    if test ! "x$PAPI" = x ; then
1625          if test ! "x$PAPIS" = x ; then
1626              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1627              echo "  Sticking with PAPI flop summary per timestep!"
1628          else
1629              echo "  Turning on performance analysis with PAPI"
1630              echo "  Please make sure PAPIINC, PAPILIB are defined"
1631              DEFINES="$DEFINES -DUSE_PAPI"
1632              INCLUDES="$INCLUDES $PAPIINC"
1633              LIBS="$LIBS $PAPILIB"
1634          fi
1635    fi
1636    if test ! "x$PCL" = x ; then
1637          if test ! "x$PCLS" = x ; then
1638              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1639              echo "  Sticking with PCL flop summary per timestep!"
1640          else
1641              echo "  Turning on performance analysis with PCL"
1642              echo "  Please make sure PCLINC, PCLLIB are defined"
1643              DEFINES="$DEFINES -DUSE_PCL"
1644              INCLUDES="$INCLUDES $PCLINC"
1645              LIBS="$LIBS $PCLLIB"
1646          fi
1647    fi
1648    if test ! "x$HPMT" = x ; then
1649          if test ! "x$PAPI" = x ; then
1650              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1651              echo "  Sticking with PAPI!"
1652          else if test ! "x$PCL" = x ; then
1653              echo "  PCL and the HPM Toolkit cannot co-exist!"
1654              echo "  Sticking with PCL!"
1655          else
1656              echo "  Turning on performance analysis with the HPM Toolkit"
1657              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1658              DEFINES="$DEFINES -DUSE_LIBHPM"
1659              INCLUDES="$INCLUDES $HPMTINC"
1660              LIBS="$LIBS $HPMTLIB"
1661          fi
1662          fi
1663    fi
1664    if test ! "x$GSL" = x ; then
1665          echo "  Turning on use of GSL to control floating point calculations"
1666          echo "  Please make sure GSLINC, GSLLIB are defined"
1667          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1668          INCLUDES="$INCLUDES $GSLINC"
1669          LIBS="$LIBS $GSLLIB"
1670    fi
1671    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1672    if test ! "x$USE_EXTENDED_SRC" = x ; then
1673          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1674          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1675  fi  fi
1676    
1677  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
# Line 1503  if test "x$HAVE_CLOC" != x ; then Line 1742  if test "x$HAVE_CLOC" != x ; then
1742      echo "yes"      echo "yes"
1743  else  else
1744      echo "no"      echo "no"
1745        if test "x$EMBED_SRC" = xt ; then
1746            echo "    WARNING: you requested file embedding but it has"
1747            echo "      been disabled since C code cannot be called"
1748            EMBED_SRC=
1749        fi
1750  fi  fi
1751  rm -f genmake_t*  rm -f genmake_t*
1752    
1753  printf "  Can we unlimit the stack size using $FC...  "  printf "  Can we unlimit the stack size using $FC...  "
1754  check_HAVE_SETRLSTK  check_HAVE_SETRLSTK
1755  if test "x$HAVE_SETRLSTK" != x ; then  if test "x$HAVE_SETRLSTK" = xt ; then
1756      echo "yes"      echo "yes"
1757  else  else
1758      echo "no"      echo "no"
# Line 1517  rm -f genmake_t* Line 1761  rm -f genmake_t*
1761    
1762  printf "  Can we register a signal handler using $FC...  "  printf "  Can we register a signal handler using $FC...  "
1763  check_HAVE_SIGREG  check_HAVE_SIGREG
1764  if test "x$HAVE_SIGREG" != x ; then  if test "x$HAVE_SIGREG" = xt ; then
1765      echo "yes"      echo "yes"
1766  else  else
1767      echo "no"      echo "no"
# Line 1542  else Line 1786  else
1786  fi  fi
1787  DEFINES="$DEFINES $IGNORE_TIME"  DEFINES="$DEFINES $IGNORE_TIME"
1788    
1789    if test "x$EMBED_SRC" = xt ; then
1790        build_embed_encode
1791    fi
1792    if test "x$EMBED_SRC" = xt ; then
1793        ENABLE="$ENABLE embed_files"
1794    fi
1795    
1796  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1797  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1798  for d in $MODS ; do  for d in $MODS ; do
1799      if test ! -d $d ; then      if test ! -d $d ; then
1800          echo          echo
1801          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1802          exit 1          exit 1
1803      else      else
1804          printf " $d"          printf "$d "
1805          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1806          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1807      fi      fi
1808  done  done
1809  echo  echo
1810    
1811  if test "x${PLATFORM}" = x ; then  #if test "x${PLATFORM}" = x ; then
1812      PLATFORM=$p_PLATFORM  #    PLATFORM=$p_PLATFORM
1813  fi  #fi
1814    
1815  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1816      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
# Line 1599  ERROR: neither of the two default script Line 1850  ERROR: neither of the two default script
1850      ${TOOLSDIR}/set64bitConst.sh      ${TOOLSDIR}/set64bitConst.sh
1851      ${TOOLSDIR}/set64bitConst.csh      ${TOOLSDIR}/set64bitConst.csh
1852    
1853    are working so please check paths or specify (with \$S64) a    are working so please check paths or specify (with \$S64) a
1854    working version of this script.    working version of this script.
1855    
1856  EOF  EOF
# Line 1611  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD Line 1862  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD
1862    
1863  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1864    
1865    #  Set Standard Code Directories:
1866    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1867        STANDARDDIRS="eesupp model"
1868    fi
1869    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
1870    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
1871    ckM=$?
1872    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
1873    ckE=$?
1874    if test $ckM = 0 -a $ckE = 1 ; then
1875        STANDARDDIRS="$STANDARDDIRS eesupp"
1876    fi
1877    
1878  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
1879  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
1880  #  they appear as regular source code  #  they appear as regular source code
1881  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1882      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1883      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
1884        ) > make_eesupp.errors 2>&1
1885      RETVAL=$?      RETVAL=$?
1886      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1887          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 1627  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1892  if test -r $ROOTDIR"/eesupp/src/Makefile
1892      fi      fi
1893  fi  fi
1894    
1895  #same for exch2  #same for pkg/exch2 and pkg/regrid
1896  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
1897      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1898      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
1899      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
1900      if test "x${RETVAL}" = x0 ; then          ) > make_${pdir}.errors 2>&1
1901          rm -f make_exch2.errors          RETVAL=$?
1902      else          if test "x${RETVAL}" = x0 ; then
1903          echo "Error: problem encountered while building source files in exch2:"              rm -f make_${pdir}.errors
1904          cat make_exch2.errors 1>&2          else
1905          exit 1              echo "Error: problem encountered while building source files in pkg/${pdir}:"
1906                cat make_${pdir}.errors 1>&2
1907                exit 1
1908            fi
1909      fi      fi
1910  fi  done
1911    
1912  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1913  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
1914      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
1915      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
1916          PDEPEND=$tmp  fi
1917      else  if  test "x${PKG_DEPEND}" = x ; then
1918          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
1919          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
1920  else  else
1921      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
1922          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
1923          exit 1          exit 1
1924      fi      fi
1925        echo "  getting package dependency info from  $PKG_DEPEND"
1926    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
1927        get_pdepend_list $PKG_DEPEND
1928  fi  fi
1929  echo "  getting package dependency info from  $PDEPEND"  
1930  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
1931  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
1932  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
1933      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
1934      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
1935  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
1936  if test ! "x${RETVAL}" = x0 ; then  fi
1937      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
1938      exit 1          echo "Warning:  No package groups information was specified."
1939            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
1940    else
1941        if test ! -r ${PKG_GROUPS} ; then
1942            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
1943            exit 1
1944        fi
1945        echo "  getting package groups info from      $PKG_GROUPS"
1946  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
1947    
1948  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
1949  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
1950  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
1951  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
1952      for i in "." $MODS ; do      for i in "." $MODS ; do
1953          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
1954                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
1955                  break                  break
1956          fi          fi
1957      done      done
1958  fi  fi
1959  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
1960      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
1961  fi      if test "x${PKG_GROUPS}" = x ; then
1962  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
1963      echo "    default packages file disabled"          exit 1
1964        fi
1965  else  else
1966      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
1967          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
1968            exit 1
1969      else      else
1970          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
1971          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1972          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1973          RETVAL=$?          RETVAL=$?
1974          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1975              printf "Error: can't parse default package list "              printf "Error: can't parse package list "
1976              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
1977              exit 1              exit 1
1978          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         RET=1  
         while test $RET = 1 ; do expand_pkg_groups; RET=$?; done  
         echo "    after group expansion packages are:  $PACKAGES"  
1979      fi      fi
1980  fi  fi
1981    for i in $pkg_list ; do
1982        PACKAGES="$PACKAGES $i"
1983    done
1984    echo     "    before group expansion packages are:$PACKAGES"
1985    if test "x${PKG_GROUPS}" != x ; then
1986        RET=1
1987        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1988        echo "    after group expansion packages are: $PACKAGES"
1989    fi
1990    
1991  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1992    echo "" > ./.tmp_pack
1993  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1994      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1995  done  done
# Line 1738  PACKAGES="$PACKAGES $ENABLE" Line 2017  PACKAGES="$PACKAGES $ENABLE"
2017  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2018      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2019      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2020          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2021          exit 1          exit 1
2022      fi      fi
2023      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
# Line 1748  for i in `grep -v "-" ./.tmp_pack | sort Line 2027  for i in `grep -v "-" ./.tmp_pack | sort
2027      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2028  done  done
2029  rm -f ./.tmp_pack  rm -f ./.tmp_pack
2030  echo "    packages are:  $PACKAGES"  echo "    packages are: $PACKAGES"
2031    
2032  #  Check availability of NetCDF and then either build the MNC template  #  Check for package MNC: if NetCDF is available, then build the MNC
2033  #  files or delete mnc from the list of available packages.  #  template files ; otherwise, delete mnc from the list of packages.
2034  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2035  RETVAL=$?  mnc_in=$?
2036  if test "x$RETVAL" = x0 ; then  if test "x$HAVE_NETCDF" != xt ; then
2037      if test "x$HAVE_NETCDF" != xt ; then      if test "x$mnc_in" = x0 ; then
2038          cat <<EOF          cat <<EOF
   
2039  *********************************************************************  *********************************************************************
2040  WARNING: the "mnc" package was enabled but tests failed to compile  WARNING: the "mnc" package was enabled but tests failed to compile
2041    NetCDF applications.  Please check that:    NetCDF applications.  Please check that:
2042    
2043    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2044    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2045         NetCDF library to link against.         NetCDF library to link against.
2046    
2047    Due to this failure, the "mnc" package is now DISABLED.    Due to this failure, the "mnc" package is now DISABLED.
2048  *********************************************************************  *********************************************************************
   
2049  EOF  EOF
2050          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2051          DISABLE="$DISABLE mnc"          DISABLE="$DISABLE mnc"
2052      else      else
2053          ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1      #  this prevent to add mnc (due to pdepend rules) if not available
2054          RETVAL=$?          DISABLE="$DISABLE mnc"
2055          if test "x${RETVAL}" = x0 ; then      fi
2056              rm -f make_mnc.errors  else
2057        # we have NetCDF, we try to build MNC template files
2058        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2059        RETVAL=$?
2060        if test "x${RETVAL}" = x0 ; then
2061            rm -f make_mnc.errors
2062        else
2063            echo "Error: problem encountered while building source files in pkg/mnc:"
2064            cat make_mnc.errors 1>&2
2065            if test "x$mnc_in" = x0 ; then
2066                exit 1
2067          else          else
2068              echo "Error: problem encountered while building source files in pkg/mnc:"              DISABLE="$DISABLE mnc"
             cat make_mnc.errors 1>&2  
             exit 1  
2069          fi          fi
2070      fi      fi
2071  fi  fi
2072    
2073  echo "  applying package dependency rules"  #  Check for package PROFILES: if NetCDF is not available,
2074  ck=  #  then delete profiles from the list of available packages.
2075  while test "x$ck" != xtt ; do  if test "x$HAVE_NETCDF" != xt ; then
2076        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2077        RETVAL=$?
2078        if test "x$RETVAL" = x0 ; then
2079            cat <<EOF
2080    *********************************************************************
2081    WARNING: the "profiles" package was enabled but tests failed to
2082      compile NetCDF applications.  Please check that:
2083    
2084      1) NetCDF is correctly installed for this compiler and
2085      2) the LIBS variable (within the "optfile") specifies the correct
2086           NetCDF library to link against.
2087    
2088      Due to this failure, the "profiles" package is now DISABLED.
2089    *********************************************************************
2090    EOF
2091            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2092            DISABLE="$DISABLE profiles"
2093        else
2094        #  this prevent to add profiles (due to pdepend rules) if not available
2095            DISABLE="$DISABLE profiles"
2096        fi
2097    fi
2098    
2099    if  test "x${PKG_DEPEND}" != x ; then
2100      echo "  applying package dependency rules"
2101      ck=
2102      while test "x$ck" != xtt ; do
2103      i=0      i=0
2104      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2105      rtot=$nname      rtot=$nname
2106      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2107    
2108          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2109          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1803  while test "x$ck" != xtt ; do Line 2115  while test "x$ck" != xtt ; do
2115                  pin="t"                  pin="t"
2116              fi              fi
2117          done          done
2118            #  or in the current $STANDARDDIRS list?
2119            for p in $STANDARDDIRS ; do
2120                if test "x$p" = "x$pname" ; then pin="t" ; fi
2121            done
2122    
2123          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2124          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 1825  while test "x$ck" != xtt ; do Line 2141  while test "x$ck" != xtt ; do
2141    
2142          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2143          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2144                #echo "   " $pname ": need to add :" $dname
2145              in_dis="f"              in_dis="f"
2146              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2147                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1845  while test "x$ck" != xtt ; do Line 2162  while test "x$ck" != xtt ; do
2162          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2163          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2164              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2165              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2166              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2167              exit 1              exit 1
2168          fi          fi
# Line 1853  while test "x$ck" != xtt ; do Line 2170  while test "x$ck" != xtt ; do
2170          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2171      done      done
2172      ck=$ck"t"      ck=$ck"t"
2173  done    done
2174  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2175    fi
2176  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2177      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2178      if test -d $adr ; then      if test -d $adr ; then
# Line 1871  done Line 2189  done
2189    
2190  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2191  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2192  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2193  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2194  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2195  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2196  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 1900  for i in $PACKAGES ; do Line 2218  for i in $PACKAGES ; do
2218  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2219    
2220  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2221      case $i in      case $i in
2222          aim_v23)          aim_v23)
2223              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2224              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
# Line 1910  for i in $PACKAGES ; do Line 2228  for i in $PACKAGES ; do
2228    
2229  done  done
2230    
2231  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2232  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2233  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2234      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2235          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 1969  fi Line 2284  fi
2284    
2285  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2286  #  compiler.  #  compiler.
2287  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2288      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2289  fi  fi
2290  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2291    touch adSrcFiles.tmp
2292  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2293      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2294      for j in $list_files ; do      for j in $list_files ; do
2295          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2296      done      done
2297  done  done
2298  if test ! "x"$FS = "x.f" ; then  if test ! "x"$FS = "x.f" ; then
2299      cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f      cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2300      mv -f ad_files_f ad_files      mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2301  fi  fi
2302    
2303  echo  echo
# Line 1993  for i in $INCLUDEDIRS ; do Line 2309  for i in $INCLUDEDIRS ; do
2309      fi      fi
2310  done  done
2311    
2312    if test ! "x$DIVA" = x ; then
2313        echo "  Creating the pseudo-MPI include directory"
2314        INCLUDES="-I./mpi_headers $INCLUDES"
2315        rm -rf ./mpi_headers
2316        mkdir -p ./mpi_headers
2317    
2318        if test "x$MPIINCLUDEDIR" = x ; then
2319            if test "x$MPIHOME" = x ; then
2320                MPIHOME='/usr'
2321            fi
2322            MPIINCLUDEDIR='$MPIHOME/include'
2323        fi
2324    
2325        if test -r $MPIINCLUDEDIR/mpif.h ; then
2326            for i in $MPI_HEADER_FILES; do
2327                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2328            done
2329    
2330            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2331        else
2332            echo " We cannot create a copy of mpif.h!"
2333    #       exit -1
2334        fi
2335    fi
2336    
2337  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2338  rm -rf .links.tmp  rm -rf .links.tmp
2339  mkdir .links.tmp  mkdir .links.tmp
2340    touch .links.tmp/foo
2341    if test ! -r ".links.tmp/foo" ; then
2342        echo
2343        echo "ERROR : something is wrong with your directory permissions or"
2344        echo "   your user file-creation mask (\"umask\") since creating a"
2345        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2346        echo "   not working.  Please try setting your umask to something"
2347        echo "   sane such as:"
2348        echo
2349        echo "      umask 0002"
2350        echo
2351        echo "   and please verify that you have the proper permissions for"
2352        echo "   creating sub-directories and then reading files created"
2353        echo "   within them."
2354        echo
2355        exit 1
2356    fi
2357    rm -f .links.tmp/foo
2358    
2359    if test "x$OPENAD" != x ; then
2360        OAD_DONT_COMPILE="/dev/null"
2361        OAD_DONT_TRANSFORM="/dev/null"
2362        OAD_KEEP_ORIGINAL="/dev/null"
2363        OAD_CB2M_FILES="/dev/null"
2364        echo "  looking for dontCompile file:  "
2365        for i in "." $MODS ; do
2366            if test -r $i"/dontCompile" ; then
2367                OAD_DONT_COMPILE=$i"/dontCompile"
2368                echo "     found $OAD_DONT_COMPILE"
2369                break
2370            fi
2371        done
2372        echo "  looking for dontTransform file:  "
2373        for i in "." $MODS ; do
2374            if test -r $i"/dontTransform" ; then
2375                OAD_DONT_TRANSFORM=$i"/dontTransform"
2376                echo "     found $OAD_DONT_TRANSFORM"
2377                break
2378            fi
2379        done
2380        echo "  looking for keepOriginal file:  "
2381        for i in "." $MODS ; do
2382            if test -r $i"/keepOriginal" ; then
2383                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2384                echo "     found $OAD_KEEP_ORIGINAL"
2385                break
2386            fi
2387        done
2388        echo "  looking for cb2mFiles:  "
2389        for i in "." $MODS ; do
2390            if test -r $i"/cb2mFiles" ; then
2391                OAD_CB2M_FILES=$i"/cb2mFiles"
2392                echo "     found $OAD_CB2M_FILES"
2393                break
2394            fi
2395        done
2396        echo "   OpenAD exceptions:  "
2397    fi
2398    
2399  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2400  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2401  printf 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2402  printf 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2403  printf 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2404  printf 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2405  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2406    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2407  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2408  for d in $alldirs ; do  for d in $alldirs ; do
2409      deplist=      deplist=
2410      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2411      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2412        if test "x$OPENAD" != x ; then
2413            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2414        fi
2415      for sf in $sfiles ; do      for sf in $sfiles ; do
2416          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2417              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2418                  ignore_f=f                  ignore_f=f
2419                  case $d/$sf in                  case $d/$sf in
2420                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2421                            ignore_f=t
2422                          ;;                          ;;
2423                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2424                            ignore_f=t
2425                          ;;                          ;;
2426                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2427                            ignore_f=t
2428                          ;;                          ;;
2429                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2430                            ignore_f=t
2431                            ;;
2432                      ./EMBEDDED_FILES.h)
2433                            ignore_f=t
2434                          ;;                          ;;
2435                    *)                    *)
2436                          #  For the local directory *ONLY*,                          #  For the local directory *ONLY*,
# Line 2035  for d in $alldirs ; do Line 2446  for d in $alldirs ; do
2446                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2447                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2448                      case $extn in                      case $extn in
2449                          F)                        F)
2450                              echo    " \\"  >> srclist.inc                          echo    " \\"  >> F77srclist.tmp
2451                              printf " $sf" >> srclist.inc                          printf " $sf" >> F77srclist.tmp
2452                              ;;                          if test "x$OPENAD" != x ; then
2453                          F90)                              basename=${sf%%.F}
2454                              echo    " \\"  >> f90srclist.inc                              isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2455                              printf " $sf" >> f90srclist.inc                              if test -z "$isAD" ; then
2456                              ;;                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2457                          c)                                  if test -z "$toBeIgnored" ; then
2458                              echo    " \\"  >> csrclist.inc                                      echo    " \\"  >> nonADF77srclist.tmp
2459                              printf " $sf" >> csrclist.inc                                      printf " $sf" >> nonADF77srclist.tmp
2460                              ;;                                  else
2461                          h)                                      echo "    not to be compiled   :  $sf"
2462                              echo    " \\"  >> hlist.inc                                  fi
2463                              printf " $sf" >> hlist.inc                              else # file is initially listed as an AD file we want to exclude it
2464                              ;;                                   # or we want to retain the untransformed version
2465                          flow)                                  notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2466                              echo    " \\"  >> ad_flow_files.inc                                  untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2467                              printf " $sf" >> ad_flow_files.inc                                  if test -n "$notToBeTransformed"; then
2468                              ;;                                      echo "    not to be transformed:  $sf"
2469                      esac                                  fi
2470                  fi                                  if test -n "$untransformedVersionToBeKept" ; then
2471                                        echo "    original to be kept  :  $sf"
2472                                    fi
2473                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2474                                        echo    " \\"  >> nonADF77srclist.tmp
2475                                        printf " $sf" >> nonADF77srclist.tmp
2476                                    fi
2477                                fi
2478                            fi
2479                            ;;
2480                        F90)
2481                            echo    " \\"  >> F90srclist.tmp
2482                            printf " $sf" >> F90srclist.tmp
2483                            ;;
2484                        c)
2485                            echo    " \\"  >> csrclist.tmp
2486                            printf " $sf" >> csrclist.tmp
2487                            ;;
2488                        h)
2489                            echo    " \\"  >> hsrclist.tmp
2490                            printf " $sf" >> hsrclist.tmp
2491                            ;;
2492                        flow)
2493                            echo    " \\"  >> ad_flow_files.tmp
2494                            printf " $sf" >> ad_flow_files.tmp
2495                            ;;
2496                       esac
2497                    fi
2498              fi              fi
2499          fi          fi
2500      done      done
2501      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2502          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2503            echo "" >> srclinks.tmp
2504          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2505          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2506          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2507    # This may happen when make thinks that a header file has to be "remade"
2508    # because a module it depends on has changed.  In this case we do nothing.
2509            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2510          fi
2511      fi      fi
2512  done  done
2513  rm -rf .links.tmp  rm -rf .links.tmp
2514  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2515  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2516  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2517  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2518  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2519    echo "" >> ad_flow_files.tmp
2520    
2521    CMDLINE=$0
2522    for xx in "$@" ; do nw=`echo $xx | wc -w`
2523        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2524                            else CMDLINE="$CMDLINE '$xx'" ; fi
2525    done
2526    
2527  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2528      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2529  fi  fi
2530  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2531  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 2083  echo "#    $MACHINE" >> $MAKEFILE Line 2533  echo "#    $MACHINE" >> $MAKEFILE
2533  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2534  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2535  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2536  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2537  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2538  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2539    
# Line 2094  EXE_SVD=$EXECUTABLE"_svd" Line 2544  EXE_SVD=$EXECUTABLE"_svd"
2544  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2545  #  #
2546  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2547  #  #
2548  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2549  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2550  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 2114  cat >>$MAKEFILE <<EOF Line 2564  cat >>$MAKEFILE <<EOF
2564  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2565    
2566  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2567  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2568  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2569  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2570  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
# Line 2132  DISABLED_PACKAGES = ${DISABLED_PACKAGES} Line 2582  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2582    
2583  # These files are created by Makefile  # These files are created by Makefile
2584  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2585  EOF  EOF
2586    
2587  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2588        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2589    else
2590        echo "EMBEDDED_FILES = " >>$MAKEFILE
2591    fi
2592    
2593  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2594  # Unix ln (link)  # Unix ln (link)
2595  LN = ${LN}  LN = ${LN}
# Line 2163  INCLUDES = ${INCLUDES} Line 2616  INCLUDES = ${INCLUDES}
2616  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2617  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2618  # Optim./debug for FC  # Optim./debug for FC
2619  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2620  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2621  # Optim./debug for FC  # Optim./debug for FC
2622  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2623  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2624    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2625  # Flags for CC  # Flags for CC
2626  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2627  # Files that should not be optimized  # Files that should not be optimized
# Line 2180  MAKEFILE=${MAKEFILE} Line 2634  MAKEFILE=${MAKEFILE}
2634    
2635  EOF  EOF
2636    
2637  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2638  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2639  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2640  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2641  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2642    cat ad_flow_files.tmp   >> $MAKEFILE
2643    
2644    rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2645    
2646  echo >> $MAKEFILE  echo >> $MAKEFILE
2647  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  
2648  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE  # add definitions for preprocessed sources
2649  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  # and note that not all systems allow case sensitive extensions
2650    # hence the $FS and $FS90 here.
2651    # for fixed format f90 files we use ff90 or FF90 resp
2652    # but these are not expected to be the original source files
2653    
2654    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2655    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2656    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2657    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2658  echo >> $MAKEFILE  echo >> $MAKEFILE
2659  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2660  echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
 rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
 rm -f ad_flow_files.inc  
2661    
2662  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2663    
2664  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2665  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2666          @echo Creating \$@ ...          @echo Creating \$@ ...
2667          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2668  depend:  depend:
2669          @make links          @make links
2670          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2671          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2672          -rm -f makedepend.out          -rm -f makedepend.out
2673    
# Line 2211  lib: libmitgcmuv.a Line 2675  lib: libmitgcmuv.a
2675    
2676  libmitgcmuv.a: \$(OBJFILES)  libmitgcmuv.a: \$(OBJFILES)
2677          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
2678            ar d   libmitgcmuv.a main.o
2679    
2680  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2681    
2682  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2683    
2684  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2685          @printf 'running ... '          @printf 'running ... '
2686          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2687    
2688    # remove most of the files that "make" generates
2689  clean:  clean:
2690          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2691            -rm -rf *.o
2692            -rm -rf *.$FS *.flowdir
2693            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2694    
2695    # remove most of the files that "make" and "make depend" generate
2696  Clean:  Clean:
2697          @make clean          @make clean
2698          @make cleanlinks          @make cleanlinks
2699          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2700          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2701            -rm -f genmake_warnings genmake_errors make.log
2702    
2703    # remove also the executable, files that "genmake2" generates (except Makefile)
2704    #         and output from a run (plus log files from testreport)
2705  CLEAN:  CLEAN:
2706          @make Clean          @make Clean
2707            -rm -f \$(EXECUTABLE) \$(EXE_AD) *.bak
2708            -rm -f $LOGFILE genmake_state genmake_*optfile genmake.tr_log make.tr_log
2709          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2710          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2711          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2712          -rm -f \$(EXECUTABLE) output.txt STD*          -rm -f *.txt STD* *diagnostics.log datetime
2713            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2714            -rm -rf mnc_test_*
2715    
 #eh3 Makefile: makefile  
2716  makefile:  makefile:
2717          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
2718  cleanlinks:  cleanlinks:
2719          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2720    
2721  # Special targets (SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2722  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2723          @echo Creating \$@ ...          @echo Creating \$@ ...
2724          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
# Line 2260  test ! "x$THISUSER" = x && echo "      -echo Line 2738  test ! "x$THISUSER" = x && echo "      -echo
2738  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2739  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2740    
2741    if test "x$EMBED_SRC" = xt ; then
2742        cat >>$MAKEFILE <<EOF
2743    
2744    decode_files.o : EMBEDDED_FILES.h
2745    
2746    ##  \$(F77_PP_SRC_FILES)
2747    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2748            @echo Creating \$@ ...
2749            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2750            -rm -f all_fF.tar.gz
2751            -gzip all_fF.tar
2752    
2753    EMBEDDED_FILES.h : all_fF.tar.gz
2754            @echo Creating \$@ ...
2755            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2756    
2757    EOF
2758    fi
2759    
2760  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2761    
2762  # The normal chain of rules is (  .F - .$FS - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )
# Line 2271  cat >>$MAKEFILE <<EOF Line 2768  cat >>$MAKEFILE <<EOF
2768          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2769  .$FS.o:  .$FS.o:
2770          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2771    .F.o:
2772            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2773  .F90.$FS90:  .F90.$FS90:
2774          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2775    .FF90.f$FS90:
2776            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2777  .$FS90.o:  .$FS90.o:
2778          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2779    .f$FS90.o:
2780            cp \$< \$(basename  \$<).f90
2781            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2782  .c.o:  .c.o:
2783          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2784    .flow.flowdir:
2785            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2786    
2787  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2788  .F.p:  .F.p:
# Line 2284  cat >>$MAKEFILE <<EOF Line 2790  cat >>$MAKEFILE <<EOF
2790  .p.$FS:  .p.$FS:
2791          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2792    
2793    EOF
2794    
2795  #=========================================  #=========================================
2796  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2797    #===  for TAMC/TAF  ======================
2798    
2799    if test "x$OPENAD" = x ; then
2800    
2801    cat >>$MAKEFILE <<EOF
2802    
2803  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2804  TAF            = ${TAF}  TAF            = ${TAF}
# Line 2300  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2813  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2813  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2814  for i in $ad_vars ; do  for i in $ad_vars ; do
2815      name=$i      name=$i
2816      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2817      eval $t1      eval $t1
2818      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2819      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2820  done  done
2821    
2822  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2823  echo >> $MAKEFILE  echo >> $MAKEFILE
2824  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2825  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2826  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2827      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2828      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2829  done  done
2830  echo >> $MAKEFILE  echo >> $MAKEFILE
2831  rm -f ad_files  rm -f adSrcFiles.tmp
2832    
2833  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2834    
2835  # ... AD ...  # ... AD ...
2836  adall: ad_taf  adall: \$(EXE_AD)
2837  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
2838  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
2839    
2840  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
2841          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2842          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2843          -rm -f ad_config.template          -rm -f ad_config.template
2844          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2845          @make \$(AD_FLOW_FILES)          @make \$(FLOFILES)
2846          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS          cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
2847    
2848  ad_taf_output.$FS: ad_input_code.$FS  ad_taf_output.$FS: ad_input_code.$FS
2849          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2850            ls -l ad_input_code_ad.$FS
2851          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2852    
2853  adtafonly:  adtafonly:
2854          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2855            ls -l ad_input_code_ad.$FS
2856          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2857    
2858  ad_taf: ad_taf_output.o \$(OBJFILES)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2859          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2860    
2861  ad_tamc_output.$FS: ad_input_code.$FS  ad_tamc_output.$FS: ad_input_code.$FS
2862          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2863          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2864    
2865  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2866          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2867    
2868  adonlyfwd:  adonlyfwd:
2869          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2870    
2871  adtrick:  adtrick:
2872          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2873    
# Line 2361  ftlall: ftl_taf Line 2876  ftlall: ftl_taf
2876  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
2877  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
2878    
2879  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2880          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2881          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2882          -rm -f ftl_config.template          -rm -f ftl_config.template
2883          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2884          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2885          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2886    
2887  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_taf_output.$FS: ftl_input_code.$FS
2888          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2889            ls -l ftl_input_code_ftl.$FS
2890          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2891    
2892  ftltafonly:  ftltafonly:
2893          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2894            ls -l ftl_input_code_ftl.$FS
2895          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2896    
2897  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2898          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2899    
2900  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
2901          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2902          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2903    
2904  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2905          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
2906    
2907  # ... SVD ...  # ... SVD ...
2908  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
# Line 2412  svd_touch: Line 2928  svd_touch:
2928          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2929          -rm -f ftl_config.template          -rm -f ftl_config.template
2930    
2931  #=========================================  EOF
2932    
2933    fi
2934    
2935    #===  for OpenAD  ========================
2936    
2937    if test "x$OPENAD" != x ; then
2938    
2939    # ============ begin OpenAD specific section ==============
2940    
2941    cat >>$MAKEFILE <<EOF
2942    
2943    # all the source files linked from the various locations:
2944    ALL_LINKED_FILES= \
2945    \$(F77_SRC_FILES) \
2946    \$(C_SRC_FILES) \
2947    \$(H_SRC_FILES) \
2948    \$(F90_SRC_FILES) \
2949    \$(SPECIAL_FILES)
2950    
2951    ifndef OPENADROOT
2952      \$(error "Error:  environment variable OPENADROOT not defined!")
2953    endif
2954    
2955    ifndef XAIFSCHEMAROOT
2956      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2957    endif
2958    
2959    ifndef XAIFBOOSTERROOT
2960      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2961    endif
2962    
2963  EOF  EOF
2964    
2965    echo "  Add the source list for common block to module conversion "
2966    echo >> $MAKEFILE
2967    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2968    for i in `cat ${OAD_CB2M_FILES}` ; do
2969      echo    " \\" >> $MAKEFILE
2970      printf " $i" >> $MAKEFILE
2971    done
2972    echo >> $MAKEFILE
2973    
2974    echo "  Add the source list for AD code generation"
2975    echo >> $MAKEFILE
2976    printf "AD_FILES = " >> $MAKEFILE
2977    for i in `cat ${OAD_CB2M_FILES}` ; do
2978      echo    " \\" >> $MAKEFILE
2979      printf " ${i}_mod.f$FS90" >> $MAKEFILE
2980    done
2981    AD_FILES=`cat adSrcFiles.tmp`
2982    for i in $AD_FILES ; do
2983      basename=${i%%.f}
2984      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
2985      if test -z "$toBeIgnored" ; then
2986        echo    " \\" >> $MAKEFILE
2987        printf " $i" >> $MAKEFILE
2988      fi
2989    done
2990    echo >> $MAKEFILE
2991    rm -f adSrcFiles.tmp
2992    
2993    cat >>$MAKEFILE <<EOF
2994    
2995    adAll: \$(EXE_AD)
2996    .PHONY: adAll
2997    
2998    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
2999    
3000    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3001    
3002    .PHONY: adDepend
3003    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3004            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3005            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3006            -rm -f makedepend.out
3007    
3008    OPENAD_SUPPORT_F90_SRC_FILES = \
3009    w2f__types.F90 \
3010    OAD_active.F90 \
3011    OAD_cp.F90 \
3012    OAD_rev.F90 \
3013    OAD_tape.F90
3014    
3015    OPENAD_SUPPORT_C_SRC_FILES = \
3016    iaddr.c \
3017    timeRatio.c
3018    
3019    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3020            cat \$^ > \$@
3021    
3022    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3023            cat \$^ > \$@
3024    
3025    f95_test.out: f95_test_mods.f90 f95_test.f90
3026            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3027            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3028    
3029    # the file included below is created by the
3030    # postProcessor and its inclusion sets the
3031    # variable POSTPROCESSEDFILES
3032    # used below. Because the file is made during
3033    # make it won't be read until the second (recursive)
3034    # invocation in the rule below
3035    -include postProcess.make
3036    
3037    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)
3038    
3039    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3040    
3041    postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)
3042    ifeq (\$(MAKELEVEL),0)
3043            \$(MAKE) adAll
3044    else
3045            touch \$@
3046    endif
3047    
3048    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)
3049    ifeq (\$(MAKELEVEL),1)
3050            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3051    else
3052            touch \$@
3053    endif
3054    
3055    # makefile debug rule
3056    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3057    .PHONY: openad
3058    
3059    # create the module files
3060    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3061            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3062    
3063    # create the header files
3064    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3065            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3066    
3067    # change everybody else to use the new module files:
3068    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3069            ../OAD_support/cb2mUseModules.bash $< ${MPI}
3070    
3071    # makefile debug rule
3072    small_f: \$(CB2M_F90_PP_SRC_FILES)
3073    .PHONY: small_f
3074    
3075    ad_output.txt: \$(EXE_AD)
3076            @printf 'linking data files ... '
3077            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3078            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3079            @printf 'running ... '
3080            @./\$(EXE_AD) > \$@
3081    
3082    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3083    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3084            cat \$^ > \$@
3085    
3086    # strip all comments and blanks to reduce
3087    # the file size in order to reduce perl's memory requirements
3088    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3089            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3090    
3091    # mfef90 preprocessing
3092    # expand statement functions
3093    # expose mfef90 specific substring handling
3094    # add the w2f__types module
3095    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3096            ./mfef90 -r8 -z -F -N132 \$<
3097            mv \$<.B \$(basename \$<).B
3098            ./whirl2f -openad \$(basename \$<).B
3099            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3100    
3101    # canonicalizer
3102    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3103            ./preProcess.py --timing --r8 -H -S \$< -o \$@
3104    
3105    # F -> WHIRL
3106    # note that the canonicalized version cuts off at col 72
3107    # doing this also for string constants which is ok as long
3108    # as we are in fixed mode and cut of exactly there.
3109    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3110    # characters respectively.
3111    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3112            ./mfef90 -r8 -z -F \$<
3113            mv \$<.B \$@
3114    
3115    # WHIRL -> XAIF
3116    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3117            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3118    
3119    # XAIF -> XAIF'
3120    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3121            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3122    
3123    # XAIF' -> WHIRL'
3124    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3125            ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<
3126    
3127    # WHIRL' -> F'
3128    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3129            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3130    
3131    # insert template directives
3132    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3133            ../OAD_support/insertTemplateDir.bash \$< \$@
3134    
3135    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3136    # postprocess F'
3137    postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3138            # the target is a placeholder to signal execution of the rule
3139            touch \$@
3140            # this step also creates the file postProcess.make but we cannot
3141            # name it as the target or else make will try to remake it for
3142            # the include directive above for any rule, e.g. make clean
3143            ./postProcess.py --progress --timing --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<
3144    
3145    # setup some links
3146    %.xsd:
3147            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3148    
3149    mfef90:
3150            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3151    
3152    # link the support files:
3153    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3154            \$(LN) ../OAD_support/\$@ .
3155    
3156    whirl2xaif xaif2whirl:
3157            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3158    
3159    preProcess.py postProcess.py:
3160            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3161    
3162    whirl2f whirl2f_be:
3163            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3164    
3165    oadDriver:
3166            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3167    
3168    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)
3169    
3170    # ============ end OpenAD specific section ==============
3171    
3172    EOF
3173    
3174    fi
3175    
3176    #=========================================
3177    
3178  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3179      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3180  fi  fi
# Line 2451  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3210  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3210  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3211    
3212  # Create special header files  # Create special header files
3213  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3214  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3215      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3216  else  else
# Line 2468  if test ! -f AD_CONFIG.h ; then Line 3227  if test ! -f AD_CONFIG.h ; then
3227      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
3228  fi  fi
3229    
   
3230  #  Write the "state" for future records  #  Write the "state" for future records
3231  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3232      printf "" > genmake_state      printf "" > genmake_state
3233      for i in $gm_state ; do      for i in $gm_state ; do
3234          t1="t2=\$$i"          t1="t2=\$$i"

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