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revision 1.138 by edhill, Sun Dec 4 13:57:08 2005 UTC revision 1.210 by jmc, Tue Nov 2 00:51:11 2010 UTC
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24  }  }
25    
26  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
27  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
29      cpp_options=$1      cpp_options=$1
30      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38  }  }
39    
40  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 39  test_for_string_in_file() { Line 47  test_for_string_in_file() {
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
49          grep -i "$strng" $file          grep -i "$strng" $file
50          return 1          exit 99
51      fi      fi
52      return 0      return 0
53  }  }
# Line 48  test_for_string_in_file() { Line 56  test_for_string_in_file() {
56  # the package list.  # the package list.
57  expand_pkg_groups() {  expand_pkg_groups() {
58      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
59      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
60          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
61          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
# Line 59  expand_pkg_groups() { Line 66  expand_pkg_groups() {
66              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
67                  matched=1                  matched=1
68                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
69                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
70                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
71              else              else
72                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
# Line 102  EOF Line 109  EOF
109              check_for_broken_Ff              check_for_broken_Ff
110          else          else
111              cat <<EOF 2>&1              cat <<EOF 2>&1
112  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
113    (fails the "cp" test) and this program cannot find a suitable    (fails the "cp" test) and this program cannot find a suitable
114    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
115    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
116    
117  EOF  EOF
# Line 138  EOF Line 145  EOF
145              check_for_broken_Ff              check_for_broken_Ff
146          else          else
147              cat <<EOF 2>&1              cat <<EOF 2>&1
148  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
149    (fails the "make/ln" test) and this program cannot find a suitable    (fails the "make/ln" test) and this program cannot find a suitable
150    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
151    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
152    
153  EOF  EOF
# Line 186  look_for_makedepend()  { Line 193  look_for_makedepend()  {
193          cat <<EOF >> $MAKEFILE          cat <<EOF >> $MAKEFILE
194  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
195  #  #
196  #   Some "makedepend" implementations will die if they cannot  #   Some "makedepend" implementations will die if they cannot
197  #   find a Makefile -- so this file is here to gives them an  #   find a Makefile -- so this file is here to gives them an
198  #   empty one to find and parse.  #   empty one to find and parse.
199  EOF  EOF
200          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
# Line 204  EOF Line 211  EOF
211              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
212          else          else
213              echo "    a system-default makedepend was not found."              echo "    a system-default makedepend was not found."
214                
215              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
216              build_cyrus_makedepend              build_cyrus_makedepend
217              RETVAL=$?              RETVAL=$?
# Line 248  build_cyrus_makedepend()  { Line 255  build_cyrus_makedepend()  {
255      fi      fi
256  }  }
257    
258    
259    build_embed_encode()
260    {
261        printf "  building the embed-encode utility...  "
262        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
263            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
264                echo
265                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
266                echo
267                EMBED_SRC=f
268                return 1
269            fi
270            clist="cc gcc c89 $CC"
271            for ic in $clist ; do
272                comm="$ic -o encode_files encode_files.c"
273                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
274                RETVAL=$?
275                if test "x$RETVAL" = x0 ; then
276                    echo "OK"
277                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
278                    return 0
279                fi
280            done
281            echo
282            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
283            echo "      so it has been disabled"
284            echo
285            EMBED_SRC=f
286            return 1
287        fi
288        echo "OK"
289        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
290    }
291    
292    
293  # Guess possible config options for this host  # Guess possible config options for this host
294  find_possible_configs()  {  find_possible_configs()  {
295    
# Line 261  find_possible_configs()  { Line 303  find_possible_configs()  {
303      echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32      echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
304      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
305      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
306        
307      echo "test" > test      echo "test" > test
308      ln -s ./test link      ln -s ./test link
309      RETVAL=$?      RETVAL=$?
# Line 282  find_possible_configs()  { Line 324  find_possible_configs()  {
324    
325      #================================================================      #================================================================
326      #  look for possible C compilers      #  look for possible C compilers
327      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
328      p_CC=      p_CC=
329      for c in $tmp ; do      for c in $tmp ; do
330          rm -f ./genmake_hello.c  ./genmake_hello          rm -f ./genmake_hello.c  ./genmake_hello
# Line 321  EOF Line 363  EOF
363    
364      #================================================================      #================================================================
365      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
366      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 gfortran"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
367      p_FC=      p_FC=
368      for c in $tmp ; do      for c in $tmp ; do
369          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 399  Error: No options file was found in:  $R Line 441  Error: No options file was found in:  $R
441  EOF  EOF
442          exit 1          exit 1
443      fi      fi
444        
445  #     # look for possible MPI libraries  #     # look for possible MPI libraries
446  #     mpi_libs=  #     mpi_libs=
447  #     mpi_fort=`which mpif77 2>/dev/null`  #     mpi_fort=`which mpif77 2>/dev/null`
# Line 418  EOF Line 460  EOF
460  #       if test "x${RETVAL}" = x0 ; then  #       if test "x${RETVAL}" = x0 ; then
461  #           a=`cat out`  #           a=`cat out`
462  #           for i in $a ; do  #           for i in $a ; do
463  #               case $i in  #               case $i in
464  #                   -*)  #                   -*)
465  #                       mpi_libs="$mpi_libs $i" ;;  #                       mpi_libs="$mpi_libs $i" ;;
466  #               esac  #               esac
# Line 437  get_pdepend_list()  { Line 479  get_pdepend_list()  {
479      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
480      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
481      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
482          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
483          > ./.pd_tmp          > ./.pd_tmp
484        RETVAL=$?
485        if test ! "x${RETVAL}" = x0 ; then
486          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
487          exit 1
488        fi
489      . ./.pd_tmp      . ./.pd_tmp
490      rm -f ./.pd_tmp      rm -f ./.pd_tmp
491    
     printf "PNAME = "${}  
492  }  }
493    
494    
# Line 465  Usage: "$0" [OPTIONS] Line 511  Usage: "$0" [OPTIONS]
511        -optfile NAME | --optfile NAME | -of NAME | --of NAME        -optfile NAME | --optfile NAME | -of NAME | --of NAME
512        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
513            Use "NAME" as the optfile.  By default, an attempt will be            Use "NAME" as the optfile.  By default, an attempt will be
514            made to find an appropriate "standard" optfile in the            made to find an appropriate "standard" optfile in the
515            tools/build_options/ directory.            tools/build_options/ directory.
516    
517      -pdepend NAME | --pdepend NAME      -pdepend NAME | --pdepend NAME
518        -pdepend=NAME | --pdepend=NAME        -pdepend=NAME | --pdepend=NAME
519            Get package dependency information from "NAME".            Get package dependency information from "NAME".
520    
521      -pdefault NAME | --pdefault NAME      -pgroups NAME | --pgroups NAME
522        -pdefault=NAME | --pdefault=NAME        -pgroups=NAME | --pgroups=NAME
523            Get the default package list from "NAME".            Get the package groups information from "NAME".
524    
525        -bash NAME
526              Explicitly specify the Bourne or BASH shell to use
527    
528      -make NAME | -m NAME      -make NAME | -m NAME
529        --make=NAME | -m=NAME        --make=NAME | -m=NAME
530            Use "NAME" for the MAKE program. The default is "make" but            Use "NAME" for the MAKE program. The default is "make" but
531            many platforms, "gmake" is the preferred choice.            many platforms, "gmake" is the preferred choice.
532    
533      -makefile NAME | -mf NAME      -makefile NAME | -mf NAME
# Line 492  Usage: "$0" [OPTIONS] Line 541  Usage: "$0" [OPTIONS]
541      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
542        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
543            Specify the location of the MITgcm ROOTDIR as "NAME".            Specify the location of the MITgcm ROOTDIR as "NAME".
544            By default, genamke will try to find the location by            By default, genamke will try to find the location by
545            looking in parent directories (up to the 5th parent).            looking in parent directories (up to the 5th parent).
546    
547      -mods NAME | --mods NAME | -mo NAME | --mo NAME      -mods NAME | --mods NAME | -mo NAME | --mo NAME
548        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
549            Here, "NAME" specifies a list of directories that are            Here, "NAME" specifies a list of directories that are
550            used for additional source code.  Files found in the            used for additional source code.  Files found in the
551            "mods list" are given preference over files of the same            "mods list" are given preference over files of the same
552            name found elsewhere.            name found elsewhere.
553    
554      -disable NAME | --disable NAME      -disable NAME | --disable NAME
555        -disable=NAME | --disable=NAME        -disable=NAME | --disable=NAME
556            Here "NAME" specifies a list of packages that we don't            Here "NAME" specifies a list of packages that we don't
557            want to use.  If this violates package dependencies,            want to use.  If this violates package dependencies,
558            genamke will exit with an error message.            genamke will exit with an error message.
559    
560      -enable NAME | --enable NAME      -enable NAME | --enable NAME
561        -enable=NAME | --enable=NAME        -enable=NAME | --enable=NAME
562            Here "NAME" specifies a list of packages that we wish            Here "NAME" specifies a list of packages that we wish
563            to specifically enable.  If this violates package            to specifically enable.  If this violates package
564            dependencies, genamke will exit with an error message.            dependencies, genamke will exit with an error message.
565    
566      -standarddirs NAME | --standarddirs NAME      -standarddirs NAME | --standarddirs NAME
567        -standarddirs=NAME | --standarddirs=NAME        -standarddirs=NAME | --standarddirs=NAME
568            Here, "NAME" specifies a list of directories to be            Here, "NAME" specifies a list of directories to be
569            used as the "standard" code.            used as the "standard" code.
570    
571      -fortran NAME | --fortran NAME | -fc NAME | --fc NAME      -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
572        -fc=NAME | --fc=NAME        -fc=NAME | --fc=NAME
573            Use "NAME" as the fortran compiler.  By default, genmake            Use "NAME" as the fortran compiler.  By default, genmake
574            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
575            "usual suspects" such as g77, f77, etc.            "usual suspects" such as g77, f77, etc.
576    
577      -cc NAME | --cc NAME | -cc=NAME | --cc=NAME      -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
578            Use "NAME" as the C compiler.  By default, genmake            Use "NAME" as the C compiler.  By default, genmake
579            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
580            "usual suspects" such as gcc, c89, cc, etc.            "usual suspects" such as gcc, c89, cc, etc.
581    
582      -[no]ieee | --[no]ieee      -[no]ieee | --[no]ieee
583            Do or don't use IEEE numerics.  Note that this option            Do or don't use IEEE numerics.  Note that this option
584            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
585            is being used.            is being used.
586    
587        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
588              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
589              *only* works if CPP_EEOPTIONS.h allows this.
590    
591        -ignoretime | -ignore_time | --ignoretime | --ignore_time
592              Ignore all the "wall clock" routines entirely.  This will
593              not in any way hurt the model results -- it simply means
594              that the code that checks how long the model spends in
595              various routines will give junk values.
596    
597      -ts | --ts      -ts | --ts
598            Produce timing information per timestep            Produce timing information per timestep
599        -papis | --papis
600              Produce summary MFlop/s (and IPC) with PAPI per timestep
601        -pcls | --pcls
602              Produce summary MFlop/s etc. with PCL per timestep
603        -foolad | --foolad
604              Fool the AD code generator
605        -papi | --papi
606              Performance analysis with PAPI
607        -pcl | --pcl
608              Performance analysis with PCL
609        -hpmt | --hpmt
610              Performance analysis with the HPM Toolkit
611    
612        -gsl | --gsl
613              Use GSL to control floating point rounding and precision
614        -devel | --devel
615              Add additional warning and debugging flags for development
616    
617      -mpi | --mpi      -mpi | --mpi
618            Include MPI header files and link to MPI libraries            Include MPI header files and link to MPI libraries
# Line 545  Usage: "$0" [OPTIONS] Line 621  Usage: "$0" [OPTIONS]
621            set to PATH. i.e. Include files from \$PATH/include, link to libraries            set to PATH. i.e. Include files from \$PATH/include, link to libraries
622            from \$PATH/lib and use binaries from \$PATH/bin.            from \$PATH/lib and use binaries from \$PATH/bin.
623    
624      -bash NAME      -omp | --omp
625            Explicitly specify the Bourne or BASH shell to use            Activate OpenMP code + use Compiler option OMPFLAG
626        -omp=OMPFLAG | --omp=OMPFLAG
627              Activate OpenMP code + use Compiler option OMPFLAG
628    
629        -es | --es | -embed-source | --embed-source
630              Embed a tarball containing the full source code
631              (including the Makefile, etc.) used to build the
632              executable [off by default]
633    
634    While it is most often a single word, the "NAME" variables specified    While it is most often a single word, the "NAME" variables specified
635    above can in many cases be a space-delimited string such as:    above can in many cases be a space-delimited string such as:
636    
637      --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'      --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
# Line 559  Usage: "$0" [OPTIONS] Line 642  Usage: "$0" [OPTIONS]
642    
643    For more detailed genmake documentation, please see:    For more detailed genmake documentation, please see:
644    
645      http://mitgcm.org/devel_HOWTO/      http://mitgcm.org/public/devel_HOWTO/
646    
647  EOF  EOF
648    
# Line 573  get_fortran_c_namemangling()  { Line 656  get_fortran_c_namemangling()  {
656      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
657          return 0          return 0
658      fi      fi
659        echo "running: get_fortran_c_namemangling()" >> genmake_warnings
660    
661      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
662        
663      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
664  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
665  EOF  EOF
# Line 659  EOF Line 743  EOF
743    
744    
745  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
746        echo >> genmake_warnings
747        echo "running: check_HAVE_CLOC()" >> genmake_warnings
748      get_fortran_c_namemangling      get_fortran_c_namemangling
749      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
750  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 675  void FC_NAMEMANGLE(cloc) ( double *curti Line 761  void FC_NAMEMANGLE(cloc) ( double *curti
761   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
762  }  }
763  EOF  EOF
764      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
765        echo $COMM >> genmake_warnings
766        $COMM >> genmake_warnings 2>&1
767      RET_C=$?      RET_C=$?
768      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
769        program hello        program hello
# Line 685  EOF Line 773  EOF
773        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
774        end        end
775  EOF  EOF
776      $FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
777        echo $COMM >> genmake_warnings
778        $COMM >> genmake_warnings 2>&1
779      RET_F=$?      RET_F=$?
780      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
781      RETVAL=$?      RETVAL=$?
# Line 698  EOF Line 788  EOF
788    
789    
790  check_HAVE_SIGREG()  {  check_HAVE_SIGREG()  {
791        if test ! "x$HAVE_SIGREG" = x ; then
792            return
793        fi
794        echo >> genmake_warnings
795        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
796      get_fortran_c_namemangling      get_fortran_c_namemangling
797      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
798  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 729  void FC_NAMEMANGLE(sigreg) (int * aip) Line 824  void FC_NAMEMANGLE(sigreg) (int * aip)
824      return;      return;
825  }  }
826  EOF  EOF
827      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
828        echo $COMM >> genmake_warnings
829        $COMM >> genmake_warnings 2>&1
830      RET_C=$?      RET_C=$?
831      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
832        program hello        program hello
# Line 739  EOF Line 836  EOF
836        call sigreg(anint)        call sigreg(anint)
837        end        end
838  EOF  EOF
     echo >> genmake_warnings  
     echo "running: check_HAVE_SIGREG()" >> genmake_warnings  
839      cat genmake_tc_2.$FS >> genmake_warnings      cat genmake_tc_2.$FS >> genmake_warnings
840      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
841      echo $COMM >> genmake_warnings      echo $COMM >> genmake_warnings
# Line 755  EOF Line 850  EOF
850    
851    
852  check_HAVE_SETRLSTK()  {  check_HAVE_SETRLSTK()  {
853        if test "x$HAVE_SETRLSTK" = xt ; then
854            DEFINES="$DEFINES -DHAVE_SETRLSTK"
855            return
856        fi  
857        if test ! "x$HAVE_SETRLSTK" = x ; then
858            return
859        fi
860        echo >> genmake_warnings
861        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
862      get_fortran_c_namemangling      get_fortran_c_namemangling
863      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
864  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 770  void FC_NAMEMANGLE(setrlstk) () Line 874  void FC_NAMEMANGLE(setrlstk) ()
874      return;      return;
875  }  }
876  EOF  EOF
877      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
878        echo $COMM >> genmake_warnings
879        $COMM >> genmake_warnings 2>&1
880      RET_C=$?      RET_C=$?
881      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
882        program hello        program hello
# Line 778  EOF Line 884  EOF
884        call setrlstk()        call setrlstk()
885        end        end
886  EOF  EOF
     echo >> genmake_warnings  
     echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings  
887      cat genmake_tc_2.$FS >> genmake_warnings      cat genmake_tc_2.$FS >> genmake_warnings
888      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
889      echo $COMM >> genmake_warnings      echo $COMM >> genmake_warnings
# Line 794  EOF Line 898  EOF
898    
899    
900  check_HAVE_STAT()  {  check_HAVE_STAT()  {
901        echo >> genmake_warnings
902        echo "running: check_HAVE_STAT()" >> genmake_warnings
903      get_fortran_c_namemangling      get_fortran_c_namemangling
904      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
905  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 814  void FC_NAMEMANGLE(tfsize) ( int *nbyte Line 920  void FC_NAMEMANGLE(tfsize) ( int *nbyte
920          *nbyte = -1;          *nbyte = -1;
921  }  }
922  EOF  EOF
923      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
924        echo $COMM >> genmake_warnings
925        $COMM >> genmake_tc.log 2>&1
926      RET_C=$?      RET_C=$?
927      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
928        program hello        program hello
# Line 823  EOF Line 931  EOF
931        print *," HELLO WORLD", nbyte        print *," HELLO WORLD", nbyte
932        end        end
933  EOF  EOF
     echo >> genmake_warnings  
     echo "running: check_HAVE_STAT()" >> genmake_warnings  
934      cat genmake_tc_2.$FS >> genmake_warnings      cat genmake_tc_2.$FS >> genmake_warnings
935      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
936      echo $COMM >> genmake_warnings      echo $COMM >> genmake_warnings
# Line 861  EOF Line 967  EOF
967        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
968        end        end
969  EOF  EOF
970      echo "===  genmake_tnc.F  ===" > genmake_tnc.log      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
971      cat genmake_tnc.F >> genmake_tnc.log      cat genmake_tnc.F >> genmake_tnc.log
972      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log      echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
973      RET_CPP=f      RET_CPP=f
974      COMM="$CPP $DEFINES $INCLUDES genmake_tnc.F"      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
975      echo "$COMM" >> genmake_tnc.log      echo "$COMM" >> genmake_tnc.log
976      $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t      eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
977      if test "x$RET_CPP" = xf ; then      if test "x$RET_CPP" = xf ; then
978          echo "  WARNING: CPP failed to pre-process the netcdf test." \          echo "  WARNING: CPP failed to pre-process the netcdf test." \
979              >> genmake_tnc.log              >> genmake_tnc.log
# Line 875  EOF Line 981  EOF
981              >> genmake_tnc.log              >> genmake_tnc.log
982      fi      fi
983      echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log      echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
984      echo "  &&  $LINK -o genmake_tnc.o $LIBS" >> genmake_tnc.log      echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
985      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
986          &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
987      RET_COMPILE=$?      RET_COMPILE=$?
988      cat genmake_tnc.log >> genmake_warnings      cat genmake_tnc.log >> genmake_warnings
989    
# Line 890  EOF Line 996  EOF
996    
997      if test "x$RET_COMPILE" = x0 ; then      if test "x$RET_COMPILE" = x0 ; then
998          HAVE_NETCDF=t          HAVE_NETCDF=t
999            echo "check_netcdf: successful" >> genmake_warnings
1000      else      else
1001          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
1002          echo "try again with added '-lnetcdf'" > genmake_tnc.log          echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1003          echo "$CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS \ " >> genmake_tnc.log          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1004          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1005          echo " &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1006          $CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS 2>/dev/null  \          cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1007              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1008              &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1009          RET_COMPILE=$?          RET_COMPILE=$?
1010            echo >> genmake_warnings
1011          cat genmake_tnc.log >> genmake_warnings          cat genmake_tnc.log >> genmake_warnings
1012          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
1013              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
1014              HAVE_NETCDF=t              HAVE_NETCDF=t
1015                echo "check_netcdf: successful" >> genmake_warnings
1016            else
1017            # try again with "-lnetcdff" added to the libs
1018                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1019                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1020                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1021                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1022                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1023                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1024                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1025                RET_COMPILE=$?
1026                echo >> genmake_warnings
1027                cat genmake_tnc.log >> genmake_warnings
1028                if test "x$RET_COMPILE" = x0 ; then
1029                    LIBS="$LIBS -lnetcdff -lnetcdf"
1030                    HAVE_NETCDF=t
1031                    echo "check_netcdf: successful" >> genmake_warnings
1032                fi
1033          fi          fi
1034      fi      fi
1035      rm -f genmake_tnc*      rm -f genmake_tnc*
# Line 932  ENABLE= Line 1058  ENABLE=
1058  DISABLE=  DISABLE=
1059  # MAKEFILE=  # MAKEFILE=
1060  # MAKEDEPEND=  # MAKEDEPEND=
1061  PDEPEND=  PKG_DEPEND=
1062    PKG_GROUPS=
1063  DUMPSTATE=t  DUMPSTATE=t
 PDEFAULT=  
1064  OPTFILE=  OPTFILE=
1065  INCLUDES="-I. $INCLUDES"  INCLUDES="-I. $INCLUDES"
1066  FFLAGS=  FFLAGS=
1067  FOPTIM=  FOPTIM=
1068    FEXTRAFLAGS=
1069    USE_EXTENDED_SRC=
1070    EXTENDED_SRC_FLAG=
1071  CFLAGS=  CFLAGS=
1072  KFLAGS1=  KFLAGS1=
1073  KFLAGS2=  KFLAGS2=
# Line 949  NOOPTFILES= Line 1078  NOOPTFILES=
1078  NOOPTFLAGS=  NOOPTFLAGS=
1079  MPI=  MPI=
1080  MPIPATH=  MPIPATH=
1081    OMP=
1082    OMPFLAG=
1083    USE_R4=
1084  TS=  TS=
1085    PAPIS=
1086    PCLS=
1087    FOOLAD=
1088    PAPI=
1089    PCL=
1090    HPMT=
1091    GSL=
1092    DEVEL=
1093  HAVE_TEST_L=  HAVE_TEST_L=
1094    
1095  # DEFINES checked by test compilation or command-line  # DEFINES checked by test compilation or command-line
# Line 957  HAVE_SYSTEM= Line 1097  HAVE_SYSTEM=
1097  HAVE_FDATE=  HAVE_FDATE=
1098  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1099  HAVE_CLOC=  HAVE_CLOC=
1100  HAVE_SETRLSTK=  # HAVE_SETRLSTK=
1101  HAVE_STAT=  HAVE_STAT=
1102  HAVE_NETCDF=  HAVE_NETCDF=
1103  HAVE_ETIME=  HAVE_ETIME=
# Line 974  BASH= Line 1114  BASH=
1114  PWD=`pwd`  PWD=`pwd`
1115  test "x$MAKE" = x  &&  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1116  test "x$AWK" = x   &&  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1117    EMBED_SRC=
1118  THISHOST=`hostname`  THISHOST=`hostname`
1119  THISCWD=`pwd`  THISCWD=`pwd`
1120  THISDATE=`date`  THISDATE=`date`
# Line 1004  FTL_TAF_FLAGS= Line 1145  FTL_TAF_FLAGS=
1145  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1146  TAMC_EXTRA=  TAMC_EXTRA=
1147    
   
1148  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1149  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS MAKEFILE MAKEDEPEND PLATFORM ROOTDIR MODS DISABLE ENABLE"
1150  gm_s2="FC CPP IEEE TS MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC IEEE USE_R4 TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"
1151    
1152  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1153  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1154  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1155  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD THISHOST THISUSER THISDATE THISVER MACHINE"
1156  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1157  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s7="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME"
1158    
1159  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1160  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 1035  quick list of options, use "genmake -h" Line 1175  quick list of options, use "genmake -h"
1175    
1176  EOF  EOF
1177    
1178    #- clean-up previous genmake logfiles:
1179    rm -f genmake_state genmake_*optfile genmake_warnings genmake_errors
1180    
1181  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1182  gm_local="genmake_local"  gm_local="genmake_local"
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
1183  printf "  getting local config information:  "  printf "  getting local config information:  "
1184  if test -f $gm_local ; then  if test -f $gm_local ; then
1185      echo "using $gm_local"      echo "using $gm_local"
# Line 1054  else Line 1191  else
1191  fi  fi
1192    
1193  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1194  #parse_options  #parse_options
1195  ac_prev=  ac_prev=
1196  for ac_option in "$@" ; do  for ac_option in "$@" ; do
# Line 1075  for ac_option in "$@" ; do Line 1203  for ac_option in "$@" ; do
1203          ac_prev=          ac_prev=
1204          continue          continue
1205      fi      fi
1206        
1207      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1208        
1209      case $ac_option in      case $ac_option in
1210                    
1211          -help | --help | -h | --h)          -help | --help | -h | --h)
# Line 1096  for ac_option in "$@" ; do Line 1224  for ac_option in "$@" ; do
1224              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1225                    
1226          -pdepend | --pdepend)          -pdepend | --pdepend)
1227              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1228          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1229              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1230                    
1231          -pdefault | --pdefault)          -pgroups | --pgroups)
1232              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1233          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1234              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1235                    
1236          -make | --make | -m | --m)          -make | --make | -m | --m)
1237              ac_prev=MAKE ;;              ac_prev=MAKE ;;
# Line 1187  for ac_option in "$@" ; do Line 1315  for ac_option in "$@" ; do
1315          -noieee | --noieee)          -noieee | --noieee)
1316              IEEE= ;;              IEEE= ;;
1317    
1318            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1319                USE_R4=true ;;
1320    
1321          -ts | --ts)          -ts | --ts)
1322              TS=true ;;              TS=true ;;
1323            -papis | --papis)
1324                PAPIS=true ;;
1325            -pcls | --pcls)
1326                PCLS=true ;;
1327            -foolad | --foolad)
1328                FOOLAD=true ;;
1329            -papi | --papi)
1330                PAPI=true ;;
1331            -pcl | --pcl)
1332                PCL=true ;;
1333            -hpmt | --hpmt)
1334                HPMT=true ;;
1335    
1336            -gsl | --gsl)
1337                GSL=true ;;
1338    
1339            -devel | --devel)
1340                DEVEL=true ;;
1341    
1342          -mpi | --mpi)          -mpi | --mpi)
1343              MPI=true ;;              MPI=true ;;
# Line 1196  for ac_option in "$@" ; do Line 1345  for ac_option in "$@" ; do
1345              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1346              MPI=true ;;              MPI=true ;;
1347                    
1348  #       -jam | --jam)          -omp | --omp)
1349  #           JAM=1 ;;              OMP=true ;;
1350  #       -nojam | --nojam)          -omp=* | --omp=*)
1351  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1352                OMP=true ;;
1353                    
1354          -ds | --ds)          -ds | --ds)
1355              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 1217  for ac_option in "$@" ; do Line 1367  for ac_option in "$@" ; do
1367          -ignoretime | -ignore_time | --ignoretime | --ignore_time)          -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1368              IGNORE_TIME="-DIGNORE_TIME" ;;              IGNORE_TIME="-DIGNORE_TIME" ;;
1369    
1370            -es | --es | -embed-source | --embed-source)
1371                EMBED_SRC=t ;;
1372    
1373          -*)          -*)
1374              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1375              usage              usage
# Line 1228  for ac_option in "$@" ; do Line 1381  for ac_option in "$@" ; do
1381              ;;              ;;
1382                    
1383      esac      esac
1384        
1385  done  done
1386    
1387    
1388  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1389      echo      echo
1390      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1391      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1392      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1393      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/devel_HOWTO/"
1394        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1395        echo "WARNING: ignore \"./.genmakerc\" and continue."
1396      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1397  fi  fi
1398    
1399  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
1400  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1401      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1402      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1403          ROOTDIR=".."          ROOTDIR=".."
1404      else      else
1405          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
# Line 1272  if test ! -d ${ROOTDIR} ; then Line 1424  if test ! -d ${ROOTDIR} ; then
1424  fi  fi
1425    
1426  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1427  if test -f "${ROOTDIR}/doc/tag-index" ; then  version_file="${ROOTDIR}/doc/tag-index"
1428      THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`  if test -f $version_file ; then
1429        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1430    #-  remove ./BUILD_INFO.h file if older than version_file
1431        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1432            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1433            rm -f ./BUILD_INFO.h
1434        fi
1435  fi  fi
1436    
1437  if test "x$MAKEFILE" = x ; then  if test "x$MAKEFILE" = x ; then
# Line 1429  if test ! "x$MPI" = x ; then Line 1587  if test ! "x$MPI" = x ; then
1587        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1588        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1589  fi  fi
1590    if test ! "x$OMP" = x ; then
1591          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1592          FFLAGS="$FFLAGS $OMPFLAG"
1593          F90FLAGS="$F90FLAGS $OMPFLAG"
1594          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1595    fi
1596    
1597    if test ! "x$USE_R4" = x ; then
1598          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1599          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1600    fi
1601    
1602  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1603        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
1604        DEFINES="$DEFINES -DTIME_PER_TIMESTEP"        if test ! "x$FOOLAD" = x ; then
1605                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1606          else
1607                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1608          fi
1609          PACKAGES="$PACKAGES showflops"
1610    fi
1611    if test ! "x$PAPIS" = x ; then
1612          echo "  Turning on PAPI flop summary per timestep"
1613          echo "  Please make sure PAPIINC, PAPILIB are defined"
1614          if test ! "x$FOOLAD" = x ; then
1615                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1616          else
1617                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1618          fi
1619          INCLUDES="$INCLUDES $PAPIINC"
1620          LIBS="$LIBS $PAPILIB"
1621          PACKAGES="$PACKAGES showflops"
1622    fi
1623    if test ! "x$PCLS" = x ; then
1624          echo "  Turning on PCL counter summary per timestep"
1625          echo "  Please make sure PCLINC, PCLLIB are defined"
1626          if test ! "x$FOOLAD" = x ; then
1627                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1628          else
1629                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1630          fi
1631          INCLUDES="$INCLUDES $PCLINC"
1632          LIBS="$LIBS $PCLLIB"
1633          PACKAGES="$PACKAGES showflops"
1634    fi
1635    if test ! "x$PAPI" = x ; then
1636          if test ! "x$PAPIS" = x ; then
1637              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1638              echo "  Sticking with PAPI flop summary per timestep!"
1639          else
1640              echo "  Turning on performance analysis with PAPI"
1641              echo "  Please make sure PAPIINC, PAPILIB are defined"
1642              DEFINES="$DEFINES -DUSE_PAPI"
1643              INCLUDES="$INCLUDES $PAPIINC"
1644              LIBS="$LIBS $PAPILIB"
1645          fi
1646    fi
1647    if test ! "x$PCL" = x ; then
1648          if test ! "x$PCLS" = x ; then
1649              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1650              echo "  Sticking with PCL flop summary per timestep!"
1651          else
1652              echo "  Turning on performance analysis with PCL"
1653              echo "  Please make sure PCLINC, PCLLIB are defined"
1654              DEFINES="$DEFINES -DUSE_PCL"
1655              INCLUDES="$INCLUDES $PCLINC"
1656              LIBS="$LIBS $PCLLIB"
1657          fi
1658    fi
1659    if test ! "x$HPMT" = x ; then
1660          if test ! "x$PAPI" = x ; then
1661              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1662              echo "  Sticking with PAPI!"
1663          else if test ! "x$PCL" = x ; then
1664              echo "  PCL and the HPM Toolkit cannot co-exist!"
1665              echo "  Sticking with PCL!"
1666          else
1667              echo "  Turning on performance analysis with the HPM Toolkit"
1668              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1669              DEFINES="$DEFINES -DUSE_LIBHPM"
1670              INCLUDES="$INCLUDES $HPMTINC"
1671              LIBS="$LIBS $HPMTLIB"
1672          fi
1673          fi
1674    fi
1675    if test ! "x$GSL" = x ; then
1676          echo "  Turning on use of GSL to control floating point calculations"
1677          echo "  Please make sure GSLINC, GSLLIB are defined"
1678          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1679          INCLUDES="$INCLUDES $GSLINC"
1680          LIBS="$LIBS $GSLLIB"
1681    fi
1682    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1683    if test ! "x$USE_EXTENDED_SRC" = x ; then
1684          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1685          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1686  fi  fi
1687    
1688  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
# Line 1503  if test "x$HAVE_CLOC" != x ; then Line 1753  if test "x$HAVE_CLOC" != x ; then
1753      echo "yes"      echo "yes"
1754  else  else
1755      echo "no"      echo "no"
1756        if test "x$EMBED_SRC" = xt ; then
1757            echo "    WARNING: you requested file embedding but it has"
1758            echo "      been disabled since C code cannot be called"
1759            EMBED_SRC=
1760        fi
1761  fi  fi
1762  rm -f genmake_t*  rm -f genmake_t*
1763    
1764  printf "  Can we unlimit the stack size using $FC...  "  printf "  Can we unlimit the stack size using $FC...  "
1765  check_HAVE_SETRLSTK  check_HAVE_SETRLSTK
1766  if test "x$HAVE_SETRLSTK" != x ; then  if test "x$HAVE_SETRLSTK" = xt ; then
1767      echo "yes"      echo "yes"
1768  else  else
1769      echo "no"      echo "no"
# Line 1517  rm -f genmake_t* Line 1772  rm -f genmake_t*
1772    
1773  printf "  Can we register a signal handler using $FC...  "  printf "  Can we register a signal handler using $FC...  "
1774  check_HAVE_SIGREG  check_HAVE_SIGREG
1775  if test "x$HAVE_SIGREG" != x ; then  if test "x$HAVE_SIGREG" = xt ; then
1776      echo "yes"      echo "yes"
1777  else  else
1778      echo "no"      echo "no"
# Line 1542  else Line 1797  else
1797  fi  fi
1798  DEFINES="$DEFINES $IGNORE_TIME"  DEFINES="$DEFINES $IGNORE_TIME"
1799    
1800    if test "x$EMBED_SRC" = xt ; then
1801        build_embed_encode
1802    fi
1803    if test "x$EMBED_SRC" = xt ; then
1804        ENABLE="$ENABLE embed_files"
1805    fi
1806    
1807    
1808  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1809  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1810  for d in $MODS ; do  for d in $MODS ; do
1811      if test ! -d $d ; then      if test ! -d $d ; then
1812          echo          echo
1813          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1814          exit 1          exit 1
1815      else      else
1816          printf " $d"          printf "$d "
1817          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1818          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1819      fi      fi
# Line 1599  ERROR: neither of the two default script Line 1862  ERROR: neither of the two default script
1862      ${TOOLSDIR}/set64bitConst.sh      ${TOOLSDIR}/set64bitConst.sh
1863      ${TOOLSDIR}/set64bitConst.csh      ${TOOLSDIR}/set64bitConst.csh
1864    
1865    are working so please check paths or specify (with \$S64) a    are working so please check paths or specify (with \$S64) a
1866    working version of this script.    working version of this script.
1867    
1868  EOF  EOF
# Line 1611  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD Line 1874  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD
1874    
1875  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1876    
1877    #  Set Standard Code Directories:
1878    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1879        STANDARDDIRS="eesupp model"
1880    fi
1881    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
1882    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
1883    ckM=$?
1884    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
1885    ckE=$?
1886    if test $ckM = 0 -a $ckE = 1 ; then
1887        STANDARDDIRS="$STANDARDDIRS eesupp"
1888    fi
1889    
1890  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
1891  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
1892  #  they appear as regular source code  #  they appear as regular source code
1893  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1894      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1895      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
1896        ) > make_eesupp.errors 2>&1
1897      RETVAL=$?      RETVAL=$?
1898      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1899          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 1627  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1904  if test -r $ROOTDIR"/eesupp/src/Makefile
1904      fi      fi
1905  fi  fi
1906    
1907  #same for exch2  #same for pkg/exch2 and pkg/regrid
1908  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
1909      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1910      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
1911      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
1912      if test "x${RETVAL}" = x0 ; then          ) > make_${pdir}.errors 2>&1
1913          rm -f make_exch2.errors          RETVAL=$?
1914      else          if test "x${RETVAL}" = x0 ; then
1915          echo "Error: problem encountered while building source files in exch2:"              rm -f make_${pdir}.errors
1916          cat make_exch2.errors 1>&2          else
1917          exit 1              echo "Error: problem encountered while building source files in pkg/${pdir}:"
1918                cat make_${pdir}.errors 1>&2
1919                exit 1
1920            fi
1921      fi      fi
1922  fi  done
1923    
1924  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1925  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
1926      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
1927      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
1928          PDEPEND=$tmp  fi
1929      else  if  test "x${PKG_DEPEND}" = x ; then
1930          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
1931          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
1932  else  else
1933      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
1934          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
1935          exit 1          exit 1
1936      fi      fi
1937        echo "  getting package dependency info from  $PKG_DEPEND"
1938    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
1939        get_pdepend_list $PKG_DEPEND
1940  fi  fi
1941  echo "  getting package dependency info from  $PDEPEND"  
1942  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
1943  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
1944  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
1945      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
1946      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
1947  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
1948  if test ! "x${RETVAL}" = x0 ; then  fi
1949      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
1950      exit 1          echo "Warning:  No package groups information was specified."
1951            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
1952    else
1953        if test ! -r ${PKG_GROUPS} ; then
1954            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
1955            exit 1
1956        fi
1957        echo "  getting package groups info from      $PKG_GROUPS"
1958  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
1959    
1960  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
1961  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
1962  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
1963  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
1964      for i in "." $MODS ; do      for i in "." $MODS ; do
1965          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
1966                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
1967                  break                  break
1968          fi          fi
1969      done      done
1970  fi  fi
1971  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
1972      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
1973  fi      if test "x${PKG_GROUPS}" = x ; then
1974  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
1975      echo "    default packages file disabled"          exit 1
1976        fi
1977  else  else
1978      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
1979          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
1980            exit 1
1981      else      else
1982          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
1983          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1984          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1985          RETVAL=$?          RETVAL=$?
1986          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1987              printf "Error: can't parse default package list "              printf "Error: can't parse package list "
1988              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
1989              exit 1              exit 1
1990          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         RET=1  
         while test $RET = 1 ; do expand_pkg_groups; RET=$?; done  
         echo "    after group expansion packages are:  $PACKAGES"  
1991      fi      fi
1992  fi  fi
1993    for i in $pkg_list ; do
1994        PACKAGES="$PACKAGES $i"
1995    done
1996    echo     "    before group expansion packages are:$PACKAGES"
1997    if test "x${PKG_GROUPS}" != x ; then
1998        RET=1
1999        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2000        echo "    after group expansion packages are: $PACKAGES"
2001    fi
2002    
2003  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2004    echo "" > ./.tmp_pack
2005  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2006      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2007  done  done
# Line 1738  PACKAGES="$PACKAGES $ENABLE" Line 2029  PACKAGES="$PACKAGES $ENABLE"
2029  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2030      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2031      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2032          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2033          exit 1          exit 1
2034      fi      fi
2035      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
# Line 1748  for i in `grep -v "-" ./.tmp_pack | sort Line 2039  for i in `grep -v "-" ./.tmp_pack | sort
2039      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2040  done  done
2041  rm -f ./.tmp_pack  rm -f ./.tmp_pack
2042  echo "    packages are:  $PACKAGES"  echo "    packages are: $PACKAGES"
2043    
2044  #  Check availability of NetCDF and then either build the MNC template  #  Check for package MNC: if NetCDF is available, then build the MNC
2045  #  files or delete mnc from the list of available packages.  #  template files ; otherwise, delete mnc from the list of packages.
2046  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2047  RETVAL=$?  mnc_in=$?
2048  if test "x$RETVAL" = x0 ; then  if test "x$HAVE_NETCDF" != xt ; then
2049      if test "x$HAVE_NETCDF" != xt ; then      if test "x$mnc_in" = x0 ; then
2050          cat <<EOF          cat <<EOF
   
2051  *********************************************************************  *********************************************************************
2052  WARNING: the "mnc" package was enabled but tests failed to compile  WARNING: the "mnc" package was enabled but tests failed to compile
2053    NetCDF applications.  Please check that:    NetCDF applications.  Please check that:
2054    
2055    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2056    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2057         NetCDF library to link against.         NetCDF library to link against.
2058    
2059    Due to this failure, the "mnc" package is now DISABLED.    Due to this failure, the "mnc" package is now DISABLED.
2060  *********************************************************************  *********************************************************************
   
2061  EOF  EOF
2062          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2063          DISABLE="$DISABLE mnc"          DISABLE="$DISABLE mnc"
2064      else      else
2065          ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1      #  this prevent to add mnc (due to pdepend rules) if not available
2066          RETVAL=$?          DISABLE="$DISABLE mnc"
2067          if test "x${RETVAL}" = x0 ; then      fi
2068              rm -f make_mnc.errors  else
2069        # we have NetCDF, we try to build MNC template files
2070        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2071        RETVAL=$?
2072        if test "x${RETVAL}" = x0 ; then
2073            rm -f make_mnc.errors
2074        else
2075            echo "Error: problem encountered while building source files in pkg/mnc:"
2076            cat make_mnc.errors 1>&2
2077            if test "x$mnc_in" = x0 ; then
2078                exit 1
2079          else          else
2080              echo "Error: problem encountered while building source files in pkg/mnc:"              DISABLE="$DISABLE mnc"
             cat make_mnc.errors 1>&2  
             exit 1  
2081          fi          fi
2082      fi      fi
2083  fi  fi
2084    
2085  echo "  applying package dependency rules"  #  Check for package PROFILES: if NetCDF is not available,
2086  ck=  #  then delete profiles from the list of available packages.
2087  while test "x$ck" != xtt ; do  if test "x$HAVE_NETCDF" != xt ; then
2088        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2089        RETVAL=$?
2090        if test "x$RETVAL" = x0 ; then
2091            cat <<EOF
2092    *********************************************************************
2093    WARNING: the "profiles" package was enabled but tests failed to
2094      compile NetCDF applications.  Please check that:
2095    
2096      1) NetCDF is correctly installed for this compiler and
2097      2) the LIBS variable (within the "optfile") specifies the correct
2098           NetCDF library to link against.
2099    
2100      Due to this failure, the "profiles" package is now DISABLED.
2101    *********************************************************************
2102    EOF
2103            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2104            DISABLE="$DISABLE profiles"
2105        else
2106        #  this prevent to add profiles (due to pdepend rules) if not available
2107            DISABLE="$DISABLE profiles"
2108        fi
2109    fi
2110    
2111    if  test "x${PKG_DEPEND}" != x ; then
2112      echo "  applying package dependency rules"
2113      ck=
2114      while test "x$ck" != xtt ; do
2115      i=0      i=0
2116      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2117      rtot=$nname      rtot=$nname
2118      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2119    
2120          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2121          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1803  while test "x$ck" != xtt ; do Line 2127  while test "x$ck" != xtt ; do
2127                  pin="t"                  pin="t"
2128              fi              fi
2129          done          done
2130            #  or in the current $STANDARDDIRS list?
2131            for p in $STANDARDDIRS ; do
2132                if test "x$p" = "x$pname" ; then pin="t" ; fi
2133            done
2134    
2135          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2136          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 1825  while test "x$ck" != xtt ; do Line 2153  while test "x$ck" != xtt ; do
2153    
2154          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2155          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2156                #echo "   " $pname ": need to add :" $dname
2157              in_dis="f"              in_dis="f"
2158              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2159                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1845  while test "x$ck" != xtt ; do Line 2174  while test "x$ck" != xtt ; do
2174          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2175          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2176              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2177              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2178              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2179              exit 1              exit 1
2180          fi          fi
# Line 1853  while test "x$ck" != xtt ; do Line 2182  while test "x$ck" != xtt ; do
2182          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2183      done      done
2184      ck=$ck"t"      ck=$ck"t"
2185  done    done
2186  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2187    fi
2188  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2189      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2190      if test -d $adr ; then      if test -d $adr ; then
# Line 1871  done Line 2201  done
2201    
2202  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2203  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2204  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2205  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2206  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2207  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2208  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 1900  for i in $PACKAGES ; do Line 2230  for i in $PACKAGES ; do
2230  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2231    
2232  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2233      case $i in      case $i in
2234          aim_v23)          aim_v23)
2235              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2236              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
# Line 1910  for i in $PACKAGES ; do Line 2240  for i in $PACKAGES ; do
2240    
2241  done  done
2242    
2243  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2244  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2245  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2246      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2247          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 1969  fi Line 2296  fi
2296    
2297  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2298  #  compiler.  #  compiler.
2299  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2300      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2301  fi  fi
2302  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2303    touch adSrcFiles.tmp
2304  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2305      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2306      for j in $list_files ; do      for j in $list_files ; do
2307          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2308      done      done
2309  done  done
2310  if test ! "x"$FS = "x.f" ; then  if test ! "x"$FS = "x.f" ; then
2311      cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f      cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2312      mv -f ad_files_f ad_files      mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2313  fi  fi
2314    
2315  echo  echo
# Line 1993  for i in $INCLUDEDIRS ; do Line 2321  for i in $INCLUDEDIRS ; do
2321      fi      fi
2322  done  done
2323    
2324    if test ! "x$DIVA" = x ; then
2325        echo "  Creating the pseudo-MPI include directory"
2326        INCLUDES="-I./mpi_headers $INCLUDES"
2327        rm -rf ./mpi_headers
2328        mkdir -p ./mpi_headers
2329    
2330        if test "x$MPIINCLUDEDIR" = x ; then
2331            if test "x$MPIHOME" = x ; then
2332                MPIHOME='/usr'
2333            fi
2334            MPIINCLUDEDIR='$MPIHOME/include'
2335        fi
2336    
2337        if test -r $MPIINCLUDEDIR/mpif.h ; then
2338            for i in $MPI_HEADER_FILES; do
2339                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2340            done
2341    
2342            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2343        else
2344            echo " We cannot create a copy of mpif.h!"
2345    #       exit -1
2346        fi
2347    fi
2348    
2349  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2350  rm -rf .links.tmp  rm -rf .links.tmp
2351  mkdir .links.tmp  mkdir .links.tmp
2352    touch .links.tmp/foo
2353    if test ! -r ".links.tmp/foo" ; then
2354        echo
2355        echo "ERROR : something is wrong with your directory permissions or"
2356        echo "   your user file-creation mask (\"umask\") since creating a"
2357        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2358        echo "   not working.  Please try setting your umask to something"
2359        echo "   sane such as:"
2360        echo
2361        echo "      umask 0002"
2362        echo
2363        echo "   and please verify that you have the proper permissions for"
2364        echo "   creating sub-directories and then reading files created"
2365        echo "   within them."
2366        echo
2367        exit 1
2368    fi
2369    rm -f .links.tmp/foo
2370    
2371    if test "x$OPENAD" != x ; then
2372        OAD_DONT_COMPILE="/dev/null"
2373        OAD_DONT_TRANSFORM="/dev/null"
2374        OAD_KEEP_ORIGINAL="/dev/null"
2375        OAD_CB2M_FILES="/dev/null"
2376        echo "  looking for dontCompile file:  "
2377        for i in "." $MODS ; do
2378            if test -r $i"/dontCompile" ; then
2379                OAD_DONT_COMPILE=$i"/dontCompile"
2380                echo "     found $OAD_DONT_COMPILE"
2381                break
2382            fi
2383        done
2384        echo "  looking for dontTransform file:  "
2385        for i in "." $MODS ; do
2386            if test -r $i"/dontTransform" ; then
2387                OAD_DONT_TRANSFORM=$i"/dontTransform"
2388                echo "     found $OAD_DONT_TRANSFORM"
2389                break
2390            fi
2391        done
2392        echo "  looking for keepOriginal file:  "
2393        for i in "." $MODS ; do
2394            if test -r $i"/keepOriginal" ; then
2395                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2396                echo "     found $OAD_KEEP_ORIGINAL"
2397                break
2398            fi
2399        done
2400        echo "  looking for cb2mFiles:  "
2401        for i in "." $MODS ; do
2402            if test -r $i"/cb2mFiles" ; then
2403                OAD_CB2M_FILES=$i"/cb2mFiles"
2404                echo "     found $OAD_CB2M_FILES"
2405                break
2406            fi
2407        done
2408        echo "   OpenAD exceptions:  "
2409    fi
2410    
2411  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2412  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2413  printf 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2414  printf 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2415  printf 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2416  printf 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2417  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2418    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2419  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2420  for d in $alldirs ; do  for d in $alldirs ; do
2421      deplist=      deplist=
2422      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2423      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2424        if test "x$OPENAD" != x ; then
2425            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2426        fi
2427      for sf in $sfiles ; do      for sf in $sfiles ; do
2428          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2429              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2430                  ignore_f=f                  ignore_f=f
2431                  case $d/$sf in                  case $d/$sf in
2432                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2433                            ignore_f=t
2434                          ;;                          ;;
2435                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2436                            ignore_f=t
2437                          ;;                          ;;
2438                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2439                            ignore_f=t
2440                          ;;                          ;;
2441                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2442                            ignore_f=t
2443                            ;;
2444                      ./EMBEDDED_FILES.h)
2445                            ignore_f=t
2446                          ;;                          ;;
2447                    *)                    *)
2448                          #  For the local directory *ONLY*,                          #  For the local directory *ONLY*,
# Line 2035  for d in $alldirs ; do Line 2458  for d in $alldirs ; do
2458                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2459                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2460                      case $extn in                      case $extn in
2461                          F)                        F)
2462                              echo    " \\"  >> srclist.inc                          echo    " \\"  >> F77srclist.tmp
2463                              printf " $sf" >> srclist.inc                          printf " $sf" >> F77srclist.tmp
2464                              ;;                          if test "x$OPENAD" != x ; then
2465                          F90)                              basename=${sf%%.F}
2466                              echo    " \\"  >> f90srclist.inc                              isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2467                              printf " $sf" >> f90srclist.inc                              if test -z "$isAD" ; then
2468                              ;;                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2469                          c)                                  if test -z "$toBeIgnored" ; then
2470                              echo    " \\"  >> csrclist.inc                                      echo    " \\"  >> nonADF77srclist.tmp
2471                              printf " $sf" >> csrclist.inc                                      printf " $sf" >> nonADF77srclist.tmp
2472                              ;;                                  else
2473                          h)                                      echo "    not to be compiled   :  $sf"
2474                              echo    " \\"  >> hlist.inc                                  fi
2475                              printf " $sf" >> hlist.inc                              else # file is initially listed as an AD file we want to exclude it
2476                              ;;                                   # or we want to retain the untransformed version
2477                          flow)                                  notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2478                              echo    " \\"  >> ad_flow_files.inc                                  untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2479                              printf " $sf" >> ad_flow_files.inc                                  if test -n "$notToBeTransformed"; then
2480                              ;;                                      echo "    not to be transformed:  $sf"
2481                      esac                                  fi
2482                  fi                                  if test -n "$untransformedVersionToBeKept" ; then
2483                                        echo "    original to be kept  :  $sf"
2484                                    fi
2485                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2486                                        echo    " \\"  >> nonADF77srclist.tmp
2487                                        printf " $sf" >> nonADF77srclist.tmp
2488                                    fi
2489                                fi
2490                            fi
2491                            ;;
2492                        F90)
2493                            echo    " \\"  >> F90srclist.tmp
2494                            printf " $sf" >> F90srclist.tmp
2495                            ;;
2496                        c)
2497                            echo    " \\"  >> csrclist.tmp
2498                            printf " $sf" >> csrclist.tmp
2499                            ;;
2500                        h)
2501                            echo    " \\"  >> hsrclist.tmp
2502                            printf " $sf" >> hsrclist.tmp
2503                            ;;
2504                        flow)
2505                            echo    " \\"  >> ad_flow_files.tmp
2506                            printf " $sf" >> ad_flow_files.tmp
2507                            ;;
2508                       esac
2509                    fi
2510              fi              fi
2511          fi          fi
2512      done      done
2513      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2514          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2515            echo "" >> srclinks.tmp
2516          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2517          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2518          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2519    # This may happen when make thinks that a header file has to be "remade"
2520    # because a module it depends on has changed.  In this case we do nothing.
2521            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2522          fi
2523      fi      fi
2524  done  done
2525  rm -rf .links.tmp  rm -rf .links.tmp
2526  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2527  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2528  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2529  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2530  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2531    echo "" >> ad_flow_files.tmp
2532    
2533    CMDLINE=$0
2534    for xx in "$@" ; do nw=`echo $xx | wc -w`
2535        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2536                            else CMDLINE="$CMDLINE '$xx'" ; fi
2537    done
2538    
2539  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2540      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2541  fi  fi
2542  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2543  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 2083  echo "#    $MACHINE" >> $MAKEFILE Line 2545  echo "#    $MACHINE" >> $MAKEFILE
2545  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2546  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2547  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2548  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2549  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2550  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2551    
# Line 2094  EXE_SVD=$EXECUTABLE"_svd" Line 2556  EXE_SVD=$EXECUTABLE"_svd"
2556  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2557  #  #
2558  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2559  #  #
2560  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2561  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2562  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 2114  cat >>$MAKEFILE <<EOF Line 2576  cat >>$MAKEFILE <<EOF
2576  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2577    
2578  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2579  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2580  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2581  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2582  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
# Line 2132  DISABLED_PACKAGES = ${DISABLED_PACKAGES} Line 2594  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2594    
2595  # These files are created by Makefile  # These files are created by Makefile
2596  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2597  EOF  EOF
2598    
2599  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2600        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2601    else
2602        echo "EMBEDDED_FILES = " >>$MAKEFILE
2603    fi
2604    
2605  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2606  # Unix ln (link)  # Unix ln (link)
2607  LN = ${LN}  LN = ${LN}
# Line 2163  INCLUDES = ${INCLUDES} Line 2628  INCLUDES = ${INCLUDES}
2628  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2629  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2630  # Optim./debug for FC  # Optim./debug for FC
2631  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2632  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2633  # Optim./debug for FC  # Optim./debug for FC
2634  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2635  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2636    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2637  # Flags for CC  # Flags for CC
2638  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2639  # Files that should not be optimized  # Files that should not be optimized
# Line 2180  MAKEFILE=${MAKEFILE} Line 2646  MAKEFILE=${MAKEFILE}
2646    
2647  EOF  EOF
2648    
2649  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2650  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2651  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2652  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2653  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2654    cat ad_flow_files.tmp   >> $MAKEFILE
2655    
2656    rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2657    
2658  echo >> $MAKEFILE  echo >> $MAKEFILE
2659  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  
2660  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE  # add definitions for preprocessed sources
2661  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  # and note that not all systems allow case sensitive extensions
2662    # hence the $FS and $FS90 here.
2663    # for fixed format f90 files we use ff90 or FF90 resp
2664    # but these are not expected to be the original source files
2665    
2666    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2667    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2668    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2669    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2670  echo >> $MAKEFILE  echo >> $MAKEFILE
2671  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2672  echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
 rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
 rm -f ad_flow_files.inc  
2673    
2674  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2675    
2676  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2677  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2678          @echo Creating \$@ ...          @echo Creating \$@ ...
2679          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2680  depend:  depend:
2681          @make links          @make links
2682          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2683          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2684          -rm -f makedepend.out          -rm -f makedepend.out
2685    
# Line 2211  lib: libmitgcmuv.a Line 2687  lib: libmitgcmuv.a
2687    
2688  libmitgcmuv.a: \$(OBJFILES)  libmitgcmuv.a: \$(OBJFILES)
2689          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
2690            ar d   libmitgcmuv.a main.o
2691    
2692  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2693    
2694  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2695    
2696  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2697          @printf 'running ... '          @printf 'running ... '
2698          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2699    
2700    # remove most of the files that "make" generates
2701  clean:  clean:
2702          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2703            -rm -rf *.o
2704            -rm -rf *.$FS *.flowdir
2705            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2706    
2707    # remove most of the files that "make" and "make depend" generate
2708  Clean:  Clean:
2709          @make clean          @make clean
2710          @make cleanlinks          @make cleanlinks
2711          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log
2712          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2713    
2714    # remove also the executable, files that "genmake2" generates (except Makefile)
2715    #         and output from a run (plus output and log files from testreport)
2716  CLEAN:  CLEAN:
2717          @make Clean          @make Clean
2718            -rm -f \$(EXECUTABLE) \$(EXE_AD) *.bak "$MAKEFILE.old"
2719            -rm -f genmake_state genmake_*optfile genmake_warnings genmake_errors
2720            -rm -f genmake.log make.log run.log
2721          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2722          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2723          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2724          -rm -f \$(EXECUTABLE) output.txt STD*          -rm -f *.txt STD* *diagnostics.log datetime
2725            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2726            -rm -rf mnc_test_*
2727    
2728  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2729  makefile:  makefile:
# Line 2240  makefile: Line 2731  makefile:
2731  cleanlinks:  cleanlinks:
2732          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2733    
2734  # Special targets (SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2735  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2736          @echo Creating \$@ ...          @echo Creating \$@ ...
2737          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
# Line 2260  test ! "x$THISUSER" = x && echo "      -echo Line 2751  test ! "x$THISUSER" = x && echo "      -echo
2751  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2752  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2753    
2754    if test "x$EMBED_SRC" = xt ; then
2755        cat >>$MAKEFILE <<EOF
2756    
2757    decode_files.o : EMBEDDED_FILES.h
2758    
2759    ##  \$(F77_PP_SRC_FILES)
2760    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2761            @echo Creating \$@ ...
2762            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2763            -rm -f all_fF.tar.gz
2764            -gzip all_fF.tar
2765    
2766    EMBEDDED_FILES.h : all_fF.tar.gz
2767            @echo Creating \$@ ...
2768            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2769    
2770    EOF
2771    fi
2772    
2773  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2774    
2775  # The normal chain of rules is (  .F - .$FS - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )
# Line 2273  cat >>$MAKEFILE <<EOF Line 2783  cat >>$MAKEFILE <<EOF
2783          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2784  .F90.$FS90:  .F90.$FS90:
2785          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2786    .FF90.f$FS90:
2787            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2788  .$FS90.o:  .$FS90.o:
2789          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2790    .f$FS90.o:
2791            cp \$< \$(basename  \$<).f90
2792            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2793  .c.o:  .c.o:
2794          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2795    .flow.flowdir:
2796            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2797    
2798  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2799  .F.p:  .F.p:
# Line 2284  cat >>$MAKEFILE <<EOF Line 2801  cat >>$MAKEFILE <<EOF
2801  .p.$FS:  .p.$FS:
2802          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2803    
2804    EOF
2805    
2806  #=========================================  #=========================================
2807  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2808    #===  for TAMC/TAF  ======================
2809    
2810    if test "x$OPENAD" = x ; then
2811    
2812    cat >>$MAKEFILE <<EOF
2813    
2814  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2815  TAF            = ${TAF}  TAF            = ${TAF}
# Line 2300  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2824  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2824  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2825  for i in $ad_vars ; do  for i in $ad_vars ; do
2826      name=$i      name=$i
2827      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2828      eval $t1      eval $t1
2829      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2830      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2831  done  done
2832    
2833  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2834  echo >> $MAKEFILE  echo >> $MAKEFILE
2835  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2836  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2837  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2838      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2839      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2840  done  done
2841  echo >> $MAKEFILE  echo >> $MAKEFILE
2842  rm -f ad_files  rm -f adSrcFiles.tmp
2843    
2844  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2845    
2846  # ... AD ...  # ... AD ...
2847  adall: ad_taf  adall: \$(EXE_AD)
2848  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
2849  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
2850    
2851  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
2852          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2853          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2854          -rm -f ad_config.template          -rm -f ad_config.template
2855          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2856          @make \$(AD_FLOW_FILES)          @make \$(FLOFILES)
2857          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS          cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
2858    
2859  ad_taf_output.$FS: ad_input_code.$FS  ad_taf_output.$FS: ad_input_code.$FS
2860          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2861            ls -l ad_input_code_ad.$FS
2862          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2863    
2864  adtafonly:  adtafonly:
2865          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2866            ls -l ad_input_code_ad.$FS
2867          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2868    
2869  ad_taf: ad_taf_output.o \$(OBJFILES)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2870          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2871    
2872  ad_tamc_output.$FS: ad_input_code.$FS  ad_tamc_output.$FS: ad_input_code.$FS
2873          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2874          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2875    
2876  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2877          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2878    
2879  adonlyfwd:  adonlyfwd:
2880          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2881    
2882  adtrick:  adtrick:
2883          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2884    
# Line 2361  ftlall: ftl_taf Line 2887  ftlall: ftl_taf
2887  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
2888  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
2889    
2890  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2891          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2892          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2893          -rm -f ftl_config.template          -rm -f ftl_config.template
2894          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2895          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2896          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2897    
2898  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_taf_output.$FS: ftl_input_code.$FS
2899          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2900            ls -l ftl_input_code_ftl.$FS
2901          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2902    
2903  ftltafonly:  ftltafonly:
2904          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2905            ls -l ftl_input_code_ftl.$FS
2906          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2907    
2908  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2909          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2910    
2911  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
2912          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2913          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2914    
2915  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2916          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2917    
2918    
2919  # ... SVD ...  # ... SVD ...
# Line 2412  svd_touch: Line 2940  svd_touch:
2940          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2941          -rm -f ftl_config.template          -rm -f ftl_config.template
2942    
2943  #=========================================  EOF
2944    
2945    fi
2946    
2947    #===  for OpenAD  ========================
2948    
2949    if test "x$OPENAD" != x ; then
2950    
2951    # ============ begin OpenAD specific section ==============
2952    
2953    cat >>$MAKEFILE <<EOF
2954    
2955    # all the source files linked from the various locations:
2956    ALL_LINKED_FILES= \
2957    \$(F77_SRC_FILES) \
2958    \$(C_SRC_FILES) \
2959    \$(H_SRC_FILES) \
2960    \$(F90_SRC_FILES) \
2961    \$(SPECIAL_FILES)
2962    
2963    ifndef OPENADROOT
2964      \$(error "Error:  environment variable OPENADROOT not defined!")
2965    endif
2966    
2967    ifndef XAIFSCHEMAROOT
2968      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2969    endif
2970    
2971    ifndef XAIFBOOSTERROOT
2972      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2973    endif
2974    
2975  EOF  EOF
2976    
2977    echo "  Add the source list for common block to module conversion "
2978    echo >> $MAKEFILE
2979    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2980    for i in `cat ${OAD_CB2M_FILES}` ; do
2981      echo    " \\" >> $MAKEFILE
2982      printf " $i" >> $MAKEFILE
2983    done
2984    echo >> $MAKEFILE
2985    
2986    echo "  Add the source list for AD code generation"
2987    echo >> $MAKEFILE
2988    printf "AD_FILES = " >> $MAKEFILE
2989    for i in `cat ${OAD_CB2M_FILES}` ; do
2990      echo    " \\" >> $MAKEFILE
2991      printf " ${i}_mod.f$FS90" >> $MAKEFILE
2992    done
2993    AD_FILES=`cat adSrcFiles.tmp`
2994    for i in $AD_FILES ; do
2995      basename=${i%%.f}
2996      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
2997      if test -z "$toBeIgnored" ; then
2998        echo    " \\" >> $MAKEFILE
2999        printf " $i" >> $MAKEFILE
3000      fi
3001    done
3002    echo >> $MAKEFILE
3003    rm -f adSrcFiles.tmp
3004    
3005    cat >>$MAKEFILE <<EOF
3006    
3007    adAll: \$(EXE_AD)
3008    .PHONY: adAll
3009    
3010    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3011    
3012    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3013    
3014    .PHONY: adDepend
3015    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3016            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3017            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3018            -rm -f makedepend.out
3019    
3020    OPENAD_SUPPORT_F90_SRC_FILES = \
3021    w2f__types.F90 \
3022    OAD_active.F90 \
3023    OAD_cp.F90 \
3024    OAD_rev.F90 \
3025    OAD_tape.F90
3026    
3027    OPENAD_SUPPORT_C_SRC_FILES = \
3028    iaddr.c \
3029    timeRatio.c
3030    
3031    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3032            cat \$^ > \$@
3033    
3034    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3035            cat \$^ > \$@
3036    
3037    f95_test.out: f95_test_mods.f90 f95_test.f90
3038            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3039            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3040    
3041    # the file included below is created by the
3042    # postProcessor and its inclusion sets the
3043    # variable POSTPROCESSEDFILES
3044    # used below. Because the file is made during
3045    # make it won't be read until the second (recursive)
3046    # invocation in the rule below
3047    -include postProcess.make
3048    
3049    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)
3050    
3051    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3052    
3053    postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)
3054    ifeq (\$(MAKELEVEL),0)
3055            \$(MAKE) adAll
3056    else
3057            touch \$@
3058    endif
3059    
3060    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)
3061    ifeq (\$(MAKELEVEL),1)
3062            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3063    else
3064            touch \$@
3065    endif
3066    
3067    # makefile debug rule
3068    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3069    .PHONY: openad
3070    
3071    # create the module files
3072    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3073            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3074    
3075    # create the header files
3076    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3077            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3078    
3079    # change everybody else to use the new module files:
3080    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3081            ../OAD_support/cb2mUseModules.bash $< ${MPI}
3082    
3083    # makefile debug rule
3084    small_f: \$(CB2M_F90_PP_SRC_FILES)
3085    .PHONY: small_f
3086    
3087    ad_output.txt: \$(EXE_AD)
3088            @printf 'linking data files ... '
3089            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3090            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3091            @printf 'running ... '
3092            @./\$(EXE_AD) > \$@
3093    
3094    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3095    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3096            cat \$^ > \$@
3097    
3098    # strip all comments and blanks to reduce
3099    # the file size in order to reduce perl's memory requirements
3100    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3101            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3102    
3103    # mfef90 preprocessing
3104    # expand statement functions
3105    # expose mfef90 specific substring handling
3106    # add the w2f__types module
3107    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3108            ./mfef90 -r8 -z -F -N132 \$<
3109            mv \$<.B \$(basename \$<).B
3110            ./whirl2f -openad \$(basename \$<).B
3111            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3112    
3113    # canonicalizer
3114    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3115            ./preProcess.py --timing --r8 -H -S \$< -o \$@
3116    
3117    # F -> WHIRL
3118    # note that the canonicalized version cuts off at col 72
3119    # doing this also for string constants which is ok as long
3120    # as we are in fixed mode and cut of exactly there.
3121    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3122    # characters respectively.
3123    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3124            ./mfef90 -r8 -z -F \$<
3125            mv \$<.B \$@
3126    
3127    # WHIRL -> XAIF
3128    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3129            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3130    
3131    # XAIF -> XAIF'
3132    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3133            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3134    
3135    # XAIF' -> WHIRL'
3136    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3137            ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<
3138    
3139    # WHIRL' -> F'
3140    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3141            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3142    
3143    # insert template directives
3144    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3145            ../OAD_support/insertTemplateDir.bash \$< \$@
3146    
3147    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3148    # postprocess F'
3149    postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3150            # the target is a placeholder to signal execution of the rule
3151            touch \$@
3152            # this step also creates the file postProcess.make but we cannot
3153            # name it as the target or else make will try to remake it for
3154            # the include directive above for any rule, e.g. make clean
3155            ./postProcess.py --progress --timing --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<
3156    
3157    # setup some links
3158    %.xsd:
3159            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3160    
3161    mfef90:
3162            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3163    
3164    # link the support files:
3165    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3166            \$(LN) ../OAD_support/\$@ .
3167    
3168    whirl2xaif xaif2whirl:
3169            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3170    
3171    preProcess.py postProcess.py:
3172            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3173    
3174    whirl2f whirl2f_be:
3175            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3176    
3177    oadDriver:
3178            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3179    
3180    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)
3181    
3182    # ============ end OpenAD specific section ==============
3183    
3184    EOF
3185    
3186    fi
3187    
3188    #=========================================
3189    
3190  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3191      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3192  fi  fi
# Line 2451  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3222  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3222  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3223    
3224  # Create special header files  # Create special header files
3225  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3226  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3227      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3228  else  else

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