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revision 1.138 by edhill, Sun Dec 4 13:57:08 2005 UTC revision 1.160 by ce107, Wed Jan 31 21:28:10 2007 UTC
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24  }  }
25    
26  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
27  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
29      cpp_options=$1      cpp_options=$1
30      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38  }  }
39    
40  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 39  test_for_string_in_file() { Line 47  test_for_string_in_file() {
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
49          grep -i "$strng" $file          grep -i "$strng" $file
50          return 1          exit 99
51      fi      fi
52      return 0      return 0
53  }  }
# Line 248  build_cyrus_makedepend()  { Line 256  build_cyrus_makedepend()  {
256      fi      fi
257  }  }
258    
259    
260    build_embed_encode()
261    {
262        printf "  building the embed-encode utility...  "
263        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265                echo
266                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267                echo
268                EMBED_SRC=f
269                return 1
270            fi
271            clist="cc gcc c89 $CC"
272            for ic in $clist ; do
273                comm="$ic -o encode_files encode_files.c"
274                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275                RETVAL=$?
276                if test "x$RETVAL" = x0 ; then
277                    echo "OK"
278                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279                    return 0
280                fi
281            done
282            echo
283            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
284            echo "      so it has been disabled"
285            echo
286            EMBED_SRC=f
287            return 1
288        fi
289        echo "OK"
290        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291    }
292    
293    
294  # Guess possible config options for this host  # Guess possible config options for this host
295  find_possible_configs()  {  find_possible_configs()  {
296    
# Line 282  find_possible_configs()  { Line 325  find_possible_configs()  {
325    
326      #================================================================      #================================================================
327      #  look for possible C compilers      #  look for possible C compilers
328      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329      p_CC=      p_CC=
330      for c in $tmp ; do      for c in $tmp ; do
331          rm -f ./genmake_hello.c  ./genmake_hello          rm -f ./genmake_hello.c  ./genmake_hello
# Line 321  EOF Line 364  EOF
364    
365      #================================================================      #================================================================
366      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
367      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 gfortran"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 535  Usage: "$0" [OPTIONS] Line 578  Usage: "$0" [OPTIONS]
578            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
579            is being used.            is being used.
580    
581        -ignoretime | -ignore_time | --ignoretime | --ignore_time
582              Ignore all the "wall clock" routines entirely.  This will
583              not in any way hurt the model results -- it simply means
584              that the code that checks how long the model spends in
585              various routines will give junk values.
586    
587      -ts | --ts      -ts | --ts
588            Produce timing information per timestep            Produce timing information per timestep
589        -papis | --papis
590              Produce summary MFlop/s (and IPC) with PAPI per timestep
591        -pcls | --pcls
592              Produce summary MFlop/s etc. with PCL per timestep
593        -foolad | --foolad
594              Fool the AD code generator
595        -papi | --papi
596              Performance analysis with PAPI
597        -pcl | --pcl
598              Performance analysis with PCL
599        -hpmt | --hpmt
600              Performance analysis with the HPM Toolkit
601    
602        -gsl | --gsl
603              Use GSL to control floating point rounding and precision
604        -devel | --devel
605              Add additional warning and debugging flags for development
606    
607      -mpi | --mpi      -mpi | --mpi
608            Include MPI header files and link to MPI libraries            Include MPI header files and link to MPI libraries
# Line 545  Usage: "$0" [OPTIONS] Line 611  Usage: "$0" [OPTIONS]
611            set to PATH. i.e. Include files from \$PATH/include, link to libraries            set to PATH. i.e. Include files from \$PATH/include, link to libraries
612            from \$PATH/lib and use binaries from \$PATH/bin.            from \$PATH/lib and use binaries from \$PATH/bin.
613    
614        -es | --es | -embed-source | --embed-source
615              Embed a tarball containing the full source code
616              (including the Makefile, etc.) used to build the
617              executable [off by default]
618    
619      -bash NAME      -bash NAME
620            Explicitly specify the Bourne or BASH shell to use            Explicitly specify the Bourne or BASH shell to use
621    
# Line 698  EOF Line 769  EOF
769    
770    
771  check_HAVE_SIGREG()  {  check_HAVE_SIGREG()  {
772        if test ! "x$HAVE_SIGREG" = x ; then
773            return
774        fi
775      get_fortran_c_namemangling      get_fortran_c_namemangling
776      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
777  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 755  EOF Line 829  EOF
829    
830    
831  check_HAVE_SETRLSTK()  {  check_HAVE_SETRLSTK()  {
832        if test "x$HAVE_SETRLSTK" = xt ; then
833            DEFINES="$DEFINES -DHAVE_SETRLSTK"
834            return
835        fi  
836        if test ! "x$HAVE_SETRLSTK" = x ; then
837            return
838        fi
839      get_fortran_c_namemangling      get_fortran_c_namemangling
840      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
841  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 865  EOF Line 946  EOF
946      cat genmake_tnc.F >> genmake_tnc.log      cat genmake_tnc.F >> genmake_tnc.log
947      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
948      RET_CPP=f      RET_CPP=f
949      COMM="$CPP $DEFINES $INCLUDES genmake_tnc.F"      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
950      echo "$COMM" >> genmake_tnc.log      echo "$COMM" >> genmake_tnc.log
951      $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t      eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
952      if test "x$RET_CPP" = xf ; then      if test "x$RET_CPP" = xf ; then
953          echo "  WARNING: CPP failed to pre-process the netcdf test." \          echo "  WARNING: CPP failed to pre-process the netcdf test." \
954              >> genmake_tnc.log              >> genmake_tnc.log
# Line 875  EOF Line 956  EOF
956              >> genmake_tnc.log              >> genmake_tnc.log
957      fi      fi
958      echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log      echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
959      echo "  &&  $LINK -o genmake_tnc.o $LIBS" >> genmake_tnc.log      echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
960      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
961          &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
962      RET_COMPILE=$?      RET_COMPILE=$?
963      cat genmake_tnc.log >> genmake_warnings      cat genmake_tnc.log >> genmake_warnings
964    
# Line 893  EOF Line 974  EOF
974      else      else
975          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
976          echo "try again with added '-lnetcdf'" > genmake_tnc.log          echo "try again with added '-lnetcdf'" > genmake_tnc.log
977          echo "$CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS \ " >> genmake_tnc.log          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
978          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
979          echo " &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
980          $CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS 2>/dev/null  \          cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
981              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
982              &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
983          RET_COMPILE=$?          RET_COMPILE=$?
984          cat genmake_tnc.log >> genmake_warnings          cat genmake_tnc.log >> genmake_warnings
985          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
986              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
987              HAVE_NETCDF=t              HAVE_NETCDF=t
988            else
989            # try again with "-lnetcdff" added to the libs
990                echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
991                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
992                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
993                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
994                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
995                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
996                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
997                RET_COMPILE=$?
998                cat genmake_tnc.log >> genmake_warnings
999                if test "x$RET_COMPILE" = x0 ; then
1000                    LIBS="$LIBS -lnetcdff -lnetcdf"
1001                    HAVE_NETCDF=t
1002                fi
1003          fi          fi
1004      fi      fi
1005      rm -f genmake_tnc*      rm -f genmake_tnc*
# Line 950  NOOPTFLAGS= Line 1046  NOOPTFLAGS=
1046  MPI=  MPI=
1047  MPIPATH=  MPIPATH=
1048  TS=  TS=
1049    PAPIS=
1050    PCLS=
1051    FOOLAD=
1052    PAPI=
1053    PCL=
1054    HPMT=
1055    GSL=
1056    DEVEL=
1057  HAVE_TEST_L=  HAVE_TEST_L=
1058    
1059  # DEFINES checked by test compilation or command-line  # DEFINES checked by test compilation or command-line
# Line 957  HAVE_SYSTEM= Line 1061  HAVE_SYSTEM=
1061  HAVE_FDATE=  HAVE_FDATE=
1062  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1063  HAVE_CLOC=  HAVE_CLOC=
1064  HAVE_SETRLSTK=  # HAVE_SETRLSTK=
1065  HAVE_STAT=  HAVE_STAT=
1066  HAVE_NETCDF=  HAVE_NETCDF=
1067  HAVE_ETIME=  HAVE_ETIME=
# Line 974  BASH= Line 1078  BASH=
1078  PWD=`pwd`  PWD=`pwd`
1079  test "x$MAKE" = x  &&  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1080  test "x$AWK" = x   &&  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1081    EMBED_SRC=
1082  THISHOST=`hostname`  THISHOST=`hostname`
1083  THISCWD=`pwd`  THISCWD=`pwd`
1084  THISDATE=`date`  THISDATE=`date`
# Line 1007  TAMC_EXTRA= Line 1112  TAMC_EXTRA=
1112    
1113  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1114  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1115  gm_s2="FC CPP IEEE TS MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"
1116    
1117  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1118  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
# Line 1189  for ac_option in "$@" ; do Line 1294  for ac_option in "$@" ; do
1294    
1295          -ts | --ts)          -ts | --ts)
1296              TS=true ;;              TS=true ;;
1297            -papis | --papis)
1298                PAPIS=true ;;
1299            -pcls | --pcls)
1300                PCLS=true ;;
1301            -foolad | --foolad)
1302                FOOLAD=true ;;
1303            -papi | --papi)
1304                PAPI=true ;;
1305            -pcl | --pcl)
1306                PCL=true ;;
1307            -hpmt | --hpmt)
1308                HPMT=true ;;
1309    
1310            -gsl | --gsl)
1311                GSL=true ;;
1312    
1313            -devel | --devel)
1314                DEVEL=true ;;
1315    
1316          -mpi | --mpi)          -mpi | --mpi)
1317              MPI=true ;;              MPI=true ;;
# Line 1217  for ac_option in "$@" ; do Line 1340  for ac_option in "$@" ; do
1340          -ignoretime | -ignore_time | --ignoretime | --ignore_time)          -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1341              IGNORE_TIME="-DIGNORE_TIME" ;;              IGNORE_TIME="-DIGNORE_TIME" ;;
1342    
1343            -es | --es | -embed-source | --embed-source)
1344                EMBED_SRC=t ;;
1345    
1346          -*)          -*)
1347              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1348              usage              usage
# Line 1247  fi Line 1373  fi
1373  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
1374  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1375      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1376      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1377          ROOTDIR=".."          ROOTDIR=".."
1378      else      else
1379          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
# Line 1432  fi Line 1558  fi
1558    
1559  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1560        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
1561        DEFINES="$DEFINES -DTIME_PER_TIMESTEP"        if test ! "x$FOOLAD" = x ; then
1562                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1563          else
1564                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1565          fi
1566    fi
1567    if test ! "x$PAPIS" = x ; then
1568          echo "  Turning on PAPI flop summary per timestep"
1569          echo "  Please make sure PAPIINC, PAPILIB are defined"
1570          if test ! "x$FOOLAD" = x ; then
1571                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1572          else
1573                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1574          fi
1575          INCLUDES="$INCLUDES $PAPIINC"
1576          LIBS="$LIBS $PAPILIB"
1577    fi
1578    if test ! "x$PCLS" = x ; then
1579          echo "  Turning on PCL counter summary per timestep"
1580          echo "  Please make sure PCLINC, PCLLIB are defined"
1581          if test ! "x$FOOLAD" = x ; then
1582                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1583          else
1584                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1585          fi
1586          INCLUDES="$INCLUDES $PCLINC"
1587          LIBS="$LIBS $PCLLIB"
1588    fi
1589    if test ! "x$PAPI" = x ; then
1590          if test ! "x$PAPIS" = x ; then
1591              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1592              echo "  Sticking with PAPI flop summary per timestep!"
1593          else
1594              echo "  Turning on performance analysis with PAPI"
1595              echo "  Please make sure PAPIINC, PAPILIB are defined"
1596              DEFINES="$DEFINES -DUSE_PAPI"
1597              INCLUDES="$INCLUDES $PAPIINC"
1598              LIBS="$LIBS $PAPILIB"
1599          fi
1600    fi
1601    if test ! "x$PCL" = x ; then
1602          if test ! "x$PCLS" = x ; then
1603              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1604              echo "  Sticking with PCL flop summary per timestep!"
1605          else
1606              echo "  Turning on performance analysis with PCL"
1607              echo "  Please make sure PCLINC, PCLLIB are defined"
1608              DEFINES="$DEFINES -DUSE_PCL"
1609              INCLUDES="$INCLUDES $PCLINC"
1610              LIBS="$LIBS $PCLLIB"
1611          fi
1612    fi
1613    if test ! "x$HPMT" = x ; then
1614          if test ! "x$PAPI" = x ; then
1615              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1616              echo "  Sticking with PAPI!"
1617          else if test ! "x$PCL" = x ; then
1618              echo "  PCL and the HPM Toolkit cannot co-exist!"
1619              echo "  Sticking with PCL!"
1620          else
1621              echo "  Turning on performance analysis with the HPM Toolkit"
1622              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1623              DEFINES="$DEFINES -DUSE_LIBHPM"
1624              INCLUDES="$INCLUDES $HPMTINC"
1625              LIBS="$LIBS $HPMTLIB"
1626          fi
1627          fi
1628    fi
1629    if test ! "x$GSL" = x ; then
1630          echo "  Turning on use of GSL to control floating point calculations"
1631          echo "  Please make sure GSLINC, GSLLIB are defined"
1632          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1633          INCLUDES="$INCLUDES $GSLINC"
1634          LIBS="$LIBS $GSLLIB"
1635  fi  fi
1636    
1637  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
# Line 1503  if test "x$HAVE_CLOC" != x ; then Line 1702  if test "x$HAVE_CLOC" != x ; then
1702      echo "yes"      echo "yes"
1703  else  else
1704      echo "no"      echo "no"
1705        if test "x$EMBED_SRC" = xt ; then
1706            echo "    WARNING: you requested file embedding but it has"
1707            echo "      been disabled since C code cannot be called"
1708            EMBED_SRC=
1709        fi
1710  fi  fi
1711  rm -f genmake_t*  rm -f genmake_t*
1712    
1713  printf "  Can we unlimit the stack size using $FC...  "  printf "  Can we unlimit the stack size using $FC...  "
1714  check_HAVE_SETRLSTK  check_HAVE_SETRLSTK
1715  if test "x$HAVE_SETRLSTK" != x ; then  if test "x$HAVE_SETRLSTK" = xt ; then
1716      echo "yes"      echo "yes"
1717  else  else
1718      echo "no"      echo "no"
# Line 1517  rm -f genmake_t* Line 1721  rm -f genmake_t*
1721    
1722  printf "  Can we register a signal handler using $FC...  "  printf "  Can we register a signal handler using $FC...  "
1723  check_HAVE_SIGREG  check_HAVE_SIGREG
1724  if test "x$HAVE_SIGREG" != x ; then  if test "x$HAVE_SIGREG" = xt ; then
1725      echo "yes"      echo "yes"
1726  else  else
1727      echo "no"      echo "no"
# Line 1542  else Line 1746  else
1746  fi  fi
1747  DEFINES="$DEFINES $IGNORE_TIME"  DEFINES="$DEFINES $IGNORE_TIME"
1748    
1749    if test "x$EMBED_SRC" = xt ; then
1750        build_embed_encode
1751    fi
1752    if test "x$EMBED_SRC" = xt ; then
1753        ENABLE="$ENABLE embed_files"
1754    fi
1755    
1756    
1757  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1758  printf "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1759  for d in $MODS ; do  for d in $MODS ; do
# Line 1627  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1839  if test -r $ROOTDIR"/eesupp/src/Makefile
1839      fi      fi
1840  fi  fi
1841    
1842  #same for exch2  #same for pkg/exch2 and pkg/regrid
1843  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
1844      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1845      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
1846      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1
1847      if test "x${RETVAL}" = x0 ; then          RETVAL=$?
1848          rm -f make_exch2.errors          if test "x${RETVAL}" = x0 ; then
1849      else              rm -f make_${pdir}.errors
1850          echo "Error: problem encountered while building source files in exch2:"          else
1851          cat make_exch2.errors 1>&2              echo "Error: problem encountered while building source files in pkg/${pdir}:"
1852          exit 1              cat make_${pdir}.errors 1>&2
1853                exit 1
1854            fi
1855      fi      fi
1856  fi  done
1857    
1858  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1859  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
# Line 1993  for i in $INCLUDEDIRS ; do Line 2207  for i in $INCLUDEDIRS ; do
2207      fi      fi
2208  done  done
2209    
2210    if test ! "x$DIVA" = x ; then
2211        echo "  Creating the pseudo-MPI include directory"
2212        INCLUDES="-I./mpi_headers $INCLUDES"
2213        rm -rf ./mpi_headers
2214        mkdir -p ./mpi_headers
2215    
2216        if test "x$MPIINCLUDEDIR" = x ; then
2217            if test "x$MPIHOME" = x ; then
2218                MPIHOME='/usr'
2219            fi
2220            MPIINCLUDEDIR='$MPIHOME/include'
2221        fi
2222        
2223        if test -r $MPIINCLUDEDIR/mpif.h ; then
2224            for i in $MPI_HEADER_FILES; do
2225                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2226            done
2227    
2228            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2229        else
2230            echo " We cannot create a copy of mpif.h!"
2231    #       exit -1
2232        fi
2233    fi
2234    
2235  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2236  rm -rf .links.tmp  rm -rf .links.tmp
2237  mkdir .links.tmp  mkdir .links.tmp
2238    touch .links.tmp/foo
2239    if test ! -r ".links.tmp/foo" ; then
2240        echo
2241        echo "ERROR : something is wrong with your directory permissions or"
2242        echo "   your user file-creation mask (\"umask\") since creating a"
2243        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2244        echo "   not working.  Please try setting your umask to something"
2245        echo "   sane such as:"
2246        echo
2247        echo "      umask 0002"
2248        echo
2249        echo "   and please verify that you have the proper permissions for"
2250        echo "   creating sub-directories and then reading files created"
2251        echo "   within them."
2252        echo
2253        exit 1
2254    fi
2255    rm -f .links.tmp/foo
2256  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2257  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2258  printf 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
# Line 2014  for d in $alldirs ; do Line 2271  for d in $alldirs ; do
2271                  ignore_f=f                  ignore_f=f
2272                  case $d/$sf in                  case $d/$sf in
2273                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2274                            ignore_f=t
2275                          ;;                          ;;
2276                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2277                            ignore_f=t
2278                          ;;                          ;;
2279                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2280                            ignore_f=t
2281                          ;;                          ;;
2282                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2283                            ignore_f=t
2284                            ;;
2285                      ./EMBEDDED_FILES.h)
2286                            ignore_f=t
2287                          ;;                          ;;
2288                    *)                    *)
2289                          #  For the local directory *ONLY*,                          #  For the local directory *ONLY*,
# Line 2132  DISABLED_PACKAGES = ${DISABLED_PACKAGES} Line 2396  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2396    
2397  # These files are created by Makefile  # These files are created by Makefile
2398  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2399  EOF  EOF
2400    
2401  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2402        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2403    else
2404        echo "EMBEDDED_FILES = " >>$MAKEFILE
2405    fi
2406    
2407    #  Note: figure out some way to add Hyades JAM libraries here
2408  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2409  # Unix ln (link)  # Unix ln (link)
2410  LN = ${LN}  LN = ${LN}
# Line 2198  rm -f ad_flow_files.inc Line 2466  rm -f ad_flow_files.inc
2466  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2467    
2468  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2469  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2470          @echo Creating \$@ ...          @echo Creating \$@ ...
2471          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2472  depend:  depend:
# Line 2211  lib: libmitgcmuv.a Line 2479  lib: libmitgcmuv.a
2479    
2480  libmitgcmuv.a: \$(OBJFILES)  libmitgcmuv.a: \$(OBJFILES)
2481          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
2482            ar d   libmitgcmuv.a main.o
2483    
2484  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
2485    
# Line 2221  output.txt: \$(EXECUTABLE) Line 2490  output.txt: \$(EXECUTABLE)
2490          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2491    
2492  clean:  clean:
2493          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2494            -rm -rf *.o
2495            -rm -rf *.$FS
2496  Clean:  Clean:
2497          @make clean          @make clean
2498          @make cleanlinks          @make cleanlinks
# Line 2232  CLEAN: Line 2503  CLEAN:
2503          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2504          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2505          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2506          -rm -f \$(EXECUTABLE) output.txt STD*          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2507            -rm -rf mnc_test_*
2508    
2509  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2510  makefile:  makefile:
# Line 2260  test ! "x$THISUSER" = x && echo "      -echo Line 2532  test ! "x$THISUSER" = x && echo "      -echo
2532  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2533  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2534    
2535    if test "x$EMBED_SRC" = xt ; then
2536        cat >>$MAKEFILE <<EOF
2537    
2538    decode_files.o : EMBEDDED_FILES.h
2539    
2540    ##  \$(F77FILES)
2541    all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2542            @echo Creating \$@ ...
2543            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2544            -rm -f all_fF.tar.gz
2545            -gzip all_fF.tar
2546    
2547    EMBEDDED_FILES.h : all_fF.tar.gz
2548            @echo Creating \$@ ...
2549            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2550    
2551    EOF
2552    fi
2553    
2554  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2555    
2556  # The normal chain of rules is (  .F - .$FS - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )
# Line 2271  cat >>$MAKEFILE <<EOF Line 2562  cat >>$MAKEFILE <<EOF
2562          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2563  .$FS.o:  .$FS.o:
2564          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2565  .F90.$FS90:  .F90.o:  
         \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@  
 .$FS90.o:  
2566          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2567  .c.o:  .c.o:
2568          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2569    
2570  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2571  .F.p:  .F.p:
# Line 2300  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2589  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2589  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2590  for i in $ad_vars ; do  for i in $ad_vars ; do
2591      name=$i      name=$i
2592      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2593      eval $t1      eval $t1
2594      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2595      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2596  done  done
2597    
2598  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
# Line 2320  rm -f ad_files Line 2609  rm -f ad_files
2609  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2610    
2611  # ... AD ...  # ... AD ...
2612  adall: ad_taf  adall: \$(EXE_AD)
2613  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
2614  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
2615    
# Line 2340  adtafonly: Line 2629  adtafonly:
2629          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2630          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2631    
2632  ad_taf: ad_taf_output.o \$(OBJFILES)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2633          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2634    
2635  ad_tamc_output.$FS: ad_input_code.$FS  ad_tamc_output.$FS: ad_input_code.$FS
2636          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS

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