--- MITgcm/tools/genmake2 2005/12/03 08:30:32 1.137 +++ MITgcm/tools/genmake2 2008/07/20 18:01:05 1.173 @@ -1,6 +1,6 @@ #! /usr/bin/env bash # -# $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/genmake2,v 1.137 2005/12/03 08:30:32 edhill Exp $ +# $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/genmake2,v 1.173 2008/07/20 18:01:05 jmc Exp $ # # Makefile generator for MITgcm UV codes # created by cnh 03/98 @@ -13,20 +13,28 @@ test_for_package_in_cpp_options() { cpp_options=$1 pkg=$2 - test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99 - test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99 - test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99 - test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99 + test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]" + test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]" + test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]" + test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]" + test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$" + test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$" + test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$" + test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$" } # Search for particular CPP #cmds associated with MPI # usage: test_for_mpi_in_cpp_eeoptions CPP_file test_for_mpi_in_cpp_eeoptions() { cpp_options=$1 - test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99 - test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99 - test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99 - test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99 + test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]" + test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]" + test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]" + test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]" + test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$" + test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$" + test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$" + test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$" } # Search for particular string in a file. Return 1 if detected, 0 if not @@ -39,7 +47,7 @@ if test "x${RETVAL}" = x0 ; then printf "Error: In $file there is an illegal line: " grep -i "$strng" $file - return 1 + exit 99 fi return 0 } @@ -248,6 +256,41 @@ fi } + +build_embed_encode() +{ + printf " building the embed-encode utility... " + if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then + if test ! -d "$ROOTDIR/tools/embed_encode" ; then + echo + echo " Error: can't locate \"$ROOTDIR/tools/embed_encode\"" + echo + EMBED_SRC=f + return 1 + fi + clist="cc gcc c89 $CC" + for ic in $clist ; do + comm="$ic -o encode_files encode_files.c" + ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1 + RETVAL=$? + if test "x$RETVAL" = x0 ; then + echo "OK" + DEFINES="$DEFINES -DHAVE_EMBED_SRC" + return 0 + fi + done + echo + echo " Error: unable to build $ROOTDIR/embed_encode/encode_files" + echo " so it has been disabled" + echo + EMBED_SRC=f + return 1 + fi + echo "OK" + DEFINES="$DEFINES -DHAVE_EMBED_SRC" +} + + # Guess possible config options for this host find_possible_configs() { @@ -282,7 +325,7 @@ #================================================================ # look for possible C compilers - tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc" + tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc" p_CC= for c in $tmp ; do rm -f ./genmake_hello.c ./genmake_hello @@ -321,7 +364,7 @@ #================================================================ # look for possible FORTRAN compilers - tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 gfortran" + tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95" p_FC= for c in $tmp ; do rm -f ./hello.f ./hello @@ -535,8 +578,31 @@ *only* works if it is supported by the OPTFILE that is being used. + -ignoretime | -ignore_time | --ignoretime | --ignore_time + Ignore all the "wall clock" routines entirely. This will + not in any way hurt the model results -- it simply means + that the code that checks how long the model spends in + various routines will give junk values. + -ts | --ts Produce timing information per timestep + -papis | --papis + Produce summary MFlop/s (and IPC) with PAPI per timestep + -pcls | --pcls + Produce summary MFlop/s etc. with PCL per timestep + -foolad | --foolad + Fool the AD code generator + -papi | --papi + Performance analysis with PAPI + -pcl | --pcl + Performance analysis with PCL + -hpmt | --hpmt + Performance analysis with the HPM Toolkit + + -gsl | --gsl + Use GSL to control floating point rounding and precision + -devel | --devel + Add additional warning and debugging flags for development -mpi | --mpi Include MPI header files and link to MPI libraries @@ -545,6 +611,11 @@ set to PATH. i.e. Include files from \$PATH/include, link to libraries from \$PATH/lib and use binaries from \$PATH/bin. + -es | --es | -embed-source | --embed-source + Embed a tarball containing the full source code + (including the Makefile, etc.) used to build the + executable [off by default] + -bash NAME Explicitly specify the Bourne or BASH shell to use @@ -675,7 +746,9 @@ *curtim = *curtim/1.E6; } EOF - make genmake_tc_1.o >> genmake_warnings 2>&1 + COMM="$CC $CFLAGS -c genmake_tc_1.c" + echo $COMM >> genmake_warnings + $COMM >> genmake_warnings 2>&1 RET_C=$? cat < genmake_tc_2.$FS program hello @@ -685,7 +758,9 @@ print *," HELLO WORLD", wtime end EOF - $FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o >> genmake_warnings 2>&1 + COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o" + echo $COMM >> genmake_warnings + $COMM >> genmake_warnings 2>&1 RET_F=$? test -x ./genmake_tc && ./genmake_tc >> genmake_warnings 2>&1 RETVAL=$? @@ -698,6 +773,9 @@ check_HAVE_SIGREG() { + if test ! "x$HAVE_SIGREG" = x ; then + return + fi get_fortran_c_namemangling cat < genmake_tc_1.c $FC_NAMEMANGLE @@ -718,8 +796,8 @@ void FC_NAMEMANGLE(sigreg) (int * aip) { - ip = aip; struct sigaction s; + ip = aip; s.sa_flags = SA_SIGINFO; s.sa_sigaction = (void *)killhandler; if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) { @@ -729,7 +807,9 @@ return; } EOF - make genmake_tc_1.o >> genmake_warnings 2>&1 + COMM="$CC $CFLAGS -c genmake_tc_1.c" + echo $COMM >> genmake_warnings + $COMM >> genmake_warnings 2>&1 RET_C=$? cat < genmake_tc_2.$FS program hello @@ -755,6 +835,13 @@ check_HAVE_SETRLSTK() { + if test "x$HAVE_SETRLSTK" = xt ; then + DEFINES="$DEFINES -DHAVE_SETRLSTK" + return + fi + if test ! "x$HAVE_SETRLSTK" = x ; then + return + fi get_fortran_c_namemangling cat < genmake_tc_1.c $FC_NAMEMANGLE @@ -770,7 +857,9 @@ return; } EOF - make genmake_tc_1.o >> genmake_warnings 2>&1 + COMM="$CC $CFLAGS -c genmake_tc_1.c" + echo $COMM >> genmake_warnings + $COMM >> genmake_warnings 2>&1 RET_C=$? cat < genmake_tc_2.$FS program hello @@ -814,7 +903,9 @@ *nbyte = -1; } EOF - make genmake_tc_1.o >> genmake_tc.log 2>&1 + COMM="$CC $CFLAGS -c genmake_tc_1.c" + echo $COMM >> genmake_warnings + $COMM >> genmake_tc.log 2>&1 RET_C=$? cat < genmake_tc_2.$FS program hello @@ -865,9 +956,9 @@ cat genmake_tnc.F >> genmake_tnc.log echo "=== genmake_tnc.F ===" >> genmake_tnc.log RET_CPP=f - COMM="$CPP $DEFINES $INCLUDES genmake_tnc.F" + COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES" echo "$COMM" >> genmake_tnc.log - $COMM > genmake_tnc.$FS 2>/dev/null && RET_CPP=t + eval $COMM > genmake_tnc.$FS 2>/dev/null && RET_CPP=t if test "x$RET_CPP" = xf ; then echo " WARNING: CPP failed to pre-process the netcdf test." \ >> genmake_tnc.log @@ -875,9 +966,9 @@ >> genmake_tnc.log fi echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log - echo " && $LINK -o genmake_tnc.o $LIBS" >> genmake_tnc.log + echo " && $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1 \ - && $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1 + && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1 RET_COMPILE=$? cat genmake_tnc.log >> genmake_warnings @@ -893,17 +984,32 @@ else # try again with "-lnetcdf" added to the libs echo "try again with added '-lnetcdf'" > genmake_tnc.log - echo "$CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS \ " >> genmake_tnc.log + echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log echo " && $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log - echo " && $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log - $CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS 2>/dev/null \ + echo " && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log + cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null \ && $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1 \ - && $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1 + && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1 RET_COMPILE=$? cat genmake_tnc.log >> genmake_warnings if test "x$RET_COMPILE" = x0 ; then LIBS="$LIBS -lnetcdf" HAVE_NETCDF=t + else + # try again with "-lnetcdff" added to the libs + echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log + echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log + echo " && $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log + echo " && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log + cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null \ + && $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1 \ + && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1 + RET_COMPILE=$? + cat genmake_tnc.log >> genmake_warnings + if test "x$RET_COMPILE" = x0 ; then + LIBS="$LIBS -lnetcdff -lnetcdf" + HAVE_NETCDF=t + fi fi fi rm -f genmake_tnc* @@ -939,6 +1045,7 @@ INCLUDES="-I. $INCLUDES" FFLAGS= FOPTIM= +FEXTRAFLAGS= CFLAGS= KFLAGS1= KFLAGS2= @@ -950,6 +1057,14 @@ MPI= MPIPATH= TS= +PAPIS= +PCLS= +FOOLAD= +PAPI= +PCL= +HPMT= +GSL= +DEVEL= HAVE_TEST_L= # DEFINES checked by test compilation or command-line @@ -957,7 +1072,7 @@ HAVE_FDATE= FC_NAMEMANGLE= HAVE_CLOC= -HAVE_SETRLSTK= +# HAVE_SETRLSTK= HAVE_STAT= HAVE_NETCDF= HAVE_ETIME= @@ -974,6 +1089,7 @@ PWD=`pwd` test "x$MAKE" = x && MAKE=make test "x$AWK" = x && AWK=awk +EMBED_SRC= THISHOST=`hostname` THISCWD=`pwd` THISDATE=`date` @@ -1007,10 +1123,10 @@ # The following state can be set directly by command-line switches gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE" -gm_s2="FC CPP IEEE TS MPI JAM DUMPSTATE STANDARDDIRS" +gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS" # The following state is not directly set by command-line switches -gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM " +gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS" gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS" gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE" gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF" @@ -1037,12 +1153,6 @@ echo "=== Processing options files and arguments ===" gm_local="genmake_local" -for i in . $MODS ; do - if test -r $i/$gm_local ; then - . $i/$gm_local - break - fi -done printf " getting local config information: " if test -f $gm_local ; then echo "using $gm_local" @@ -1189,6 +1299,24 @@ -ts | --ts) TS=true ;; + -papis | --papis) + PAPIS=true ;; + -pcls | --pcls) + PCLS=true ;; + -foolad | --foolad) + FOOLAD=true ;; + -papi | --papi) + PAPI=true ;; + -pcl | --pcl) + PCL=true ;; + -hpmt | --hpmt) + HPMT=true ;; + + -gsl | --gsl) + GSL=true ;; + + -devel | --devel) + DEVEL=true ;; -mpi | --mpi) MPI=true ;; @@ -1217,6 +1345,9 @@ -ignoretime | -ignore_time | --ignoretime | --ignore_time) IGNORE_TIME="-DIGNORE_TIME" ;; + -es | --es | -embed-source | --embed-source) + EMBED_SRC=t ;; + -*) echo "Error: unrecognized option: "$ac_option usage @@ -1235,19 +1366,18 @@ if test -f ./.genmakerc ; then echo echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\"" - echo " file. This file format is no longer supported. Please see:" - echo + echo " file. This file format is no longer supported. For directions on" + echo " how to setup and use the new \"genmake2\" script, please see:" echo " http://mitgcm.org/devel_HOWTO/" - echo - echo " for directions on how to setup and use the new \"genmake2\" input" - echo " files and send an email to MITgcm-support@mitgcm.org if you want help." + echo " and send an email to MITgcm-support@mitgcm.org if you need help." + echo "WARNING: ignore \"./.genmakerc\" and continue." echo fi # Find the MITgcm ${ROOTDIR} if test "x${ROOTDIR}" = x ; then tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'` - if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then + if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then ROOTDIR=".." else for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do @@ -1432,7 +1562,83 @@ if test ! "x$TS" = x ; then echo " Turning on timing per timestep" - DEFINES="$DEFINES -DTIME_PER_TIMESTEP" + if test ! "x$FOOLAD" = x ; then + DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP" + else + DEFINES="$DEFINES -DTIME_PER_TIMESTEP" + fi + PACKAGES="$PACKAGES showflops" +fi +if test ! "x$PAPIS" = x ; then + echo " Turning on PAPI flop summary per timestep" + echo " Please make sure PAPIINC, PAPILIB are defined" + if test ! "x$FOOLAD" = x ; then + DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP" + else + DEFINES="$DEFINES -DUSE_PAPI_FLOPS" + fi + INCLUDES="$INCLUDES $PAPIINC" + LIBS="$LIBS $PAPILIB" + PACKAGES="$PACKAGES showflops" +fi +if test ! "x$PCLS" = x ; then + echo " Turning on PCL counter summary per timestep" + echo " Please make sure PCLINC, PCLLIB are defined" + if test ! "x$FOOLAD" = x ; then + DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP" + else + DEFINES="$DEFINES -DUSE_PCL_FLOPS" + fi + INCLUDES="$INCLUDES $PCLINC" + LIBS="$LIBS $PCLLIB" + PACKAGES="$PACKAGES showflops" +fi +if test ! "x$PAPI" = x ; then + if test ! "x$PAPIS" = x ; then + echo " PAPI performance analysis and flop summary per timestep cannot co-exist!" + echo " Sticking with PAPI flop summary per timestep!" + else + echo " Turning on performance analysis with PAPI" + echo " Please make sure PAPIINC, PAPILIB are defined" + DEFINES="$DEFINES -DUSE_PAPI" + INCLUDES="$INCLUDES $PAPIINC" + LIBS="$LIBS $PAPILIB" + fi +fi +if test ! "x$PCL" = x ; then + if test ! "x$PCLS" = x ; then + echo " PCL performance analysis and flop summary per timestep cannot co-exist!" + echo " Sticking with PCL flop summary per timestep!" + else + echo " Turning on performance analysis with PCL" + echo " Please make sure PCLINC, PCLLIB are defined" + DEFINES="$DEFINES -DUSE_PCL" + INCLUDES="$INCLUDES $PCLINC" + LIBS="$LIBS $PCLLIB" + fi +fi +if test ! "x$HPMT" = x ; then + if test ! "x$PAPI" = x ; then + echo " PAPI and the HPM Toolkit cannot co-exist!" + echo " Sticking with PAPI!" + else if test ! "x$PCL" = x ; then + echo " PCL and the HPM Toolkit cannot co-exist!" + echo " Sticking with PCL!" + else + echo " Turning on performance analysis with the HPM Toolkit" + echo " Please make sure HPMTINC, HPMTLIB are defined" + DEFINES="$DEFINES -DUSE_LIBHPM" + INCLUDES="$INCLUDES $HPMTINC" + LIBS="$LIBS $HPMTLIB" + fi + fi +fi +if test ! "x$GSL" = x ; then + echo " Turning on use of GSL to control floating point calculations" + echo " Please make sure GSLINC, GSLLIB are defined" + DEFINES="$DEFINES -DUSE_GSL_IEEE" + INCLUDES="$INCLUDES $GSLINC" + LIBS="$LIBS $GSLLIB" fi printf "\n=== Checking system libraries ===\n" @@ -1503,12 +1709,17 @@ echo "yes" else echo "no" + if test "x$EMBED_SRC" = xt ; then + echo " WARNING: you requested file embedding but it has" + echo " been disabled since C code cannot be called" + EMBED_SRC= + fi fi rm -f genmake_t* printf " Can we unlimit the stack size using $FC... " check_HAVE_SETRLSTK -if test "x$HAVE_SETRLSTK" != x ; then +if test "x$HAVE_SETRLSTK" = xt ; then echo "yes" else echo "no" @@ -1517,7 +1728,7 @@ printf " Can we register a signal handler using $FC... " check_HAVE_SIGREG -if test "x$HAVE_SIGREG" != x ; then +if test "x$HAVE_SIGREG" = xt ; then echo "yes" else echo "no" @@ -1542,6 +1753,14 @@ fi DEFINES="$DEFINES $IGNORE_TIME" +if test "x$EMBED_SRC" = xt ; then + build_embed_encode +fi +if test "x$EMBED_SRC" = xt ; then + ENABLE="$ENABLE embed_files" +fi + + printf "\n=== Setting defaults ===\n" printf " Adding MODS directories: " for d in $MODS ; do @@ -1627,19 +1846,21 @@ fi fi -#same for exch2 -if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then - echo " Making source files in exch2 from templates" - ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1 - RETVAL=$? - if test "x${RETVAL}" = x0 ; then - rm -f make_exch2.errors - else - echo "Error: problem encountered while building source files in exch2:" - cat make_exch2.errors 1>&2 - exit 1 +#same for pkg/exch2 and pkg/regrid +for pdir in exch2 regrid ; do + if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then + echo " Making source files in pkg/${pdir} from templates" + ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1 + RETVAL=$? + if test "x${RETVAL}" = x0 ; then + rm -f make_${pdir}.errors + else + echo "Error: problem encountered while building source files in pkg/${pdir}:" + cat make_${pdir}.errors 1>&2 + exit 1 + fi fi -fi +done printf "\n=== Determining package settings ===\n" if test "x${PDEPEND}" = x ; then @@ -1750,8 +1971,8 @@ rm -f ./.tmp_pack echo " packages are: $PACKAGES" -# Check availability of NetCDF and then either build the MNC template -# files or delete mnc from the list of available packages. +# Check for package MNC: if NetCDF is available, then build the MNC +# template files ; otherwise, delete mnc from the list of packages. echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1 RETVAL=$? if test "x$RETVAL" = x0 ; then @@ -1785,13 +2006,38 @@ fi fi +# Check for package PROFILES: if NetCDF is not available, +# then delete profiles from the list of available packages. +echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1 +RETVAL=$? +if test "x$RETVAL" = x0 ; then + if test "x$HAVE_NETCDF" != xt ; then + cat < srclinks.tmp echo "" >> srclinks.tmp printf 'SRCFILES = ' > srclist.inc @@ -2014,12 +2304,19 @@ ignore_f=f case $d/$sf in ./$PACKAGES_DOT_H) + ignore_f=t ;; ./AD_CONFIG.h) + ignore_f=t ;; ./FC_NAMEMANGLE.h) + ignore_f=t ;; ./BUILD_INFO.h) + ignore_f=t + ;; + ./EMBEDDED_FILES.h) + ignore_f=t ;; *) # For the local directory *ONLY*, @@ -2064,7 +2361,10 @@ echo "" >> srclinks.tmp echo "# These files are linked from $d" >> srclinks.tmp echo "$deplist :" >> srclinks.tmp - printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp +# We need to make sure that the link isn't already there. +# This may happen when make thinks that a header file has to be "remade" +# because a module it depends on has changed. In this case we do nothing. + printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp fi done rm -rf .links.tmp @@ -2132,11 +2432,15 @@ # These files are created by Makefile SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h - EOF -# Note: figure out some way to add Hyades JAM libraries here - +if test "x$EMBED_SRC" = xt ; then + echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE +else + echo "EMBEDDED_FILES = " >>$MAKEFILE +fi + +# Note: figure out some way to add Hyades JAM libraries here cat >>$MAKEFILE <> $MAKEFILE echo 'F90FILES = $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE echo 'OBJFILES = $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE +echo 'FLOFILES = $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE echo >> $MAKEFILE echo '.SUFFIXES:' >> $MAKEFILE -echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE +echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90 .flowdir .flow' >> $MAKEFILE rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc rm -f ad_flow_files.inc cat >>$MAKEFILE < \$@ clean: - -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template + -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template + -rm -rf *.o + -rm -rf *.$FS *.flowdir Clean: @make clean @make cleanlinks -rm -f \$(SPECIAL_FILES) - -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak + -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log f90mkdepend.log *.bak + -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log CLEAN: @make Clean -find \$(EXEDIR) -name "*.meta" -exec rm {} \; -find \$(EXEDIR) -name "*.data" -exec rm {} \; -find \$(EXEDIR) -name "fort.*" -exec rm {} \; - -rm -f \$(EXECUTABLE) output.txt STD* + -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime + -rm -f *_MIT_CE_000.opt0000 costfunction*0000 + -rm -rf mnc_test_* #eh3 Makefile: makefile makefile: @@ -2260,6 +2571,25 @@ test ! "x$THISDATE" = x && echo " -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE test ! "x$THISHOST" = x && echo " -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE +if test "x$EMBED_SRC" = xt ; then + cat >>$MAKEFILE <>$MAKEFILE < \$@ .$FS.o: \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$< -.F90.$FS90: - \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@ -.$FS90.o: +.F.o: + \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$< +.F90.o: \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$< .c.o: - \$(CC) \$(CFLAGS) -c \$< + \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$< +.flow.flowdir: + \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@ # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain .F.p: @@ -2300,10 +2632,10 @@ ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS" for i in $ad_vars ; do name=$i - t1="t2=\$"`echo $i` + t1="t2=\$"`echo "$i"` eval $t1 printf "%-20s = " $name >> $MAKEFILE - echo $t2 >> $MAKEFILE + echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE done echo " Add the source list for AD code generation" @@ -2320,7 +2652,7 @@ cat >>$MAKEFILE < AD_CONFIG.h -rm -f ad_config.template @make \$(F77FILES) - @make \$(AD_FLOW_FILES) - cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS + @make \$(FLOFILES) + cat \$(FLOFILES) \$(AD_FILES) > ad_input_code.$FS ad_taf_output.$FS: ad_input_code.$FS \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS + ls -l ad_input_code_ad.$FS cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS adtafonly: \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS + ls -l ad_input_code_ad.$FS cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS -ad_taf: ad_taf_output.o \$(OBJFILES) - \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS) +\${EXE_AD}: ad_taf_output.o \$(OBJFILES) + \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS) ad_tamc_output.$FS: ad_input_code.$FS \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS @@ -2371,10 +2705,12 @@ ftl_taf_output.$FS: ftl_input_code.$FS \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS + ls -l ftl_input_code_ftl.$FS cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS ftltafonly: \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS + ls -l ftl_input_code_ftl.$FS cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS ftl_taf: ftl_taf_output.o \$(OBJFILES)