/[MITgcm]/MITgcm/tools/genmake2
ViewVC logotype

Diff of /MITgcm/tools/genmake2

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph | View Patch Patch

revision 1.14 by edhill, Tue Oct 21 15:29:20 2003 UTC revision 1.111 by edhill, Sat Nov 13 03:23:28 2004 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99
17      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99
18      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99
19          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99
20          exit 99  }
21      fi  
22      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1  # Search for particular CPP #cmds associated with MPI
23      RETVAL=$?  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
24      if test "x${RETVAL}" = x0 ; then  test_for_mpi_in_cpp_eeoptions() {
25          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"      cpp_options=$1
26          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99
27      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99
28      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99
29        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99
30    }
31    
32    # Search for particular string in a file. Return 1 if detected, 0 if not
33    # usage: test_for_string_in_file file string
34    test_for_string_in_file() {
35        file=$1
36        strng=$2
37        grep -i "$strng" $file > /dev/null 2>&1
38      RETVAL=$?      RETVAL=$?
39      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
40          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
41          exit 99          grep -i "$strng" $file
42            return 1
43      fi      fi
44      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
45  }  }
46    
47  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
# Line 46  expand_pkg_groups() { Line 51  expand_pkg_groups() {
51      PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"      PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"
52      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
53          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
54          cat ./p1.tmp | awk '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
55          matched=0          matched=0
56          for i in $PACKAGES ; do          for i in $PACKAGES ; do
57              line=`grep "^ *$i" ./p2.tmp`              line=`grep "^ *$i" ./p2.tmp`
58              RETVAL=$?              RETVAL=$?
59              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
60                  matched=1                  matched=1
61                  replace=`echo $line | awk '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
62                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with: $replace"
63                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
64              else              else
# Line 62  expand_pkg_groups() { Line 67  expand_pkg_groups() {
67          done          done
68          PACKAGES=$new_packages          PACKAGES=$new_packages
69          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
70            return $matched
71      else      else
72          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
73      fi      fi
74  }  }
75    
76    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
77    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
78    check_for_broken_Ff()  {
79        #  Do we have defaults for $FS and/or $FS90 ?
80        tfs=f
81        tfs9=f90
82        if test "x$FS" != x ; then
83            tfs="$FS"
84        fi
85        if test "x$FS90" != x ; then
86            tfs9="$FS90"
87        fi
88    
89        #  First check the ability to create a *.F/.f pair.
90        cat <<EOF >> genmake_hello.F
91          program hello
92          write(*,*) 'hi'
93          stop
94          end
95    EOF
96        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
97        RETVAL=$?
98        if test "x$RETVAL" != x0 ; then
99            if test "x$FS" = x ; then
100                FS='for'
101                FS90='fr9'
102                check_for_broken_Ff
103            else
104                cat <<EOF 2>&1
105    ERROR: Your file system cannot distinguish between *.F and *.f files
106      (fails the "cp" test) and this program cannot find a suitable
107      replacement extension.  Please try a different build environment or
108      contact the <MITgcm-support@mitgcm.org> list for help.
109    
110    EOF
111                exit -1
112            fi
113            return
114        fi
115        rm -f genmake_hello.*
116    
117        #  Check the ability of ${MAKE} and ${LN} to use the current set
118        #  of extensions.
119        cat <<EOF >> genmake_hello.F
120          program hello
121          write(*,*) 'hi'
122          stop
123          end
124    EOF
125        test -f Makefile  &&  mv -f Makefile Makefile.bak
126        cat <<EOF >> Makefile
127    .SUFFIXES:
128    .SUFFIXES: .$tfs .F
129    .F.$tfs:
130            $LN \$< \$@
131    EOF
132        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
133        RETVAL=$?
134        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
135            if test "x$FS" = x ; then
136                FS='for'
137                FS90='fr9'
138                check_for_broken_Ff
139            else
140                cat <<EOF 2>&1
141    ERROR: Your file system cannot distinguish between *.F and *.f files
142      (fails the "make/ln" test) and this program cannot find a suitable
143      replacement extension.  Please try a different build environment or
144      contact the <MITgcm-support@mitgcm.org> list for help.
145    
146    EOF
147                exit -1
148                return
149            fi
150        fi
151        rm -f genmake_hello.* Makefile
152        test -f Makefile  &&  mv -f Makefile.bak Makefile
153    
154        #  If we make it here, use the extensions
155        FS=$tfs
156        FS90=$tfs9
157        return
158    }
159    
160    
161    look_for_makedepend()  {
162    
163        #  The "original" makedepend is part of the Imake system that is
164        #  most often distributed with XFree86 or with an XFree86 source
165        #  package.  As a result, many machines (eg. generic Linux) do not
166        #  have a system-default "makedepend" available.  For those
167        #  systems, we have two fall-back options:
168        #
169        #    1) a makedepend implementation shipped with the cyrus-imapd
170        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
171        #
172        #    2) a known-buggy xmakedpend shell script
173        #
174        #  So the choices are, in order:
175        #
176        #    1) use the user-specified program
177        #    2) use a system-wide default
178        #    3) locally build and use the cyrus implementation
179        #    4) fall back to the buggy local xmakedpend script
180        #
181        if test "x${MAKEDEPEND}" = x ; then
182            which makedepend > /dev/null 2>&1
183            RV0=$?
184            cat <<EOF >> genmake_tc.f
185          program test
186          write(*,*) 'test'
187          stop
188          end
189    EOF
190            makedepend genmake_tc.f > /dev/null 2>&1
191            RV1=$?
192            if test "x${RV0}${RV1}" = x00 ; then
193                MAKEDEPEND=makedepend
194            else
195                echo "    a system-default makedepend was not found."
196                
197                #  Try to build the cyrus implementation
198                build_cyrus_makedepend
199                RETVAL=$?
200                if test "x$RETVAL" != x0 ; then
201                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
202                fi
203                rm -f ./genmake_cy_md
204            fi
205        else
206            #  echo "MAKEDEPEND=${MAKEDEPEND}"
207            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
208            RETVAL=$?
209            if test x"$RETVAL" = x0 ; then
210                build_cyrus_makedepend
211            fi
212        fi
213    }
214    
215    
216    build_cyrus_makedepend()  {
217        rm -f ./genmake_cy_md
218        (
219            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
220                &&  ./configure > /dev/null 2>&1  \
221                &&  make > /dev/null 2>&1
222            if test -x ./makedepend.exe ; then
223                $LN ./makedepend.exe ./makedepend
224            fi
225            ./makedepend ifparser.c > /dev/null 2>&1  \
226                &&  echo "true"
227        ) > ./genmake_cy_md
228        grep true ./genmake_cy_md > /dev/null 2>&1
229        RETVAL=$?
230        rm -f ./genmake_cy_md
231        if test "x$RETVAL" = x0 ; then
232            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
233            return 0
234        else
235            echo "WARNING: unable to build cyrus-imapd-makedepend"
236            return 1
237        fi
238    }
239    
240  # Guess possible config options for this host  # Guess possible config options for this host
241  find_possible_configs()  {  find_possible_configs()  {
242    
243      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
244      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
245      PLATFORM=`echo $tmp2 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
246        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
247        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
248        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
249        PLATFORM=$tmp3
250        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
251      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
252      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
253            
254      echo "test" > test      echo "test" > test
255      ln -s ./test link      ln -s ./test link
# Line 103  find_possible_configs()  { Line 267  find_possible_configs()  {
267          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
268      fi      fi
269    
270      # look for possible fortran compilers      look_for_makedepend
271      tmp="$MITGCM_FC $FC g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"  
272        #================================================================
273        #  look for possible C compilers
274        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"
275        p_CC=
276        for c in $tmp ; do
277            rm -f ./genmake_hello.c  ./genmake_hello
278            cat >> genmake_hello.c << EOF
279    #include <stdio.h>
280    int main(int argc, char **argv) {
281      printf("Hello!\n");
282      return 0;
283    }
284    EOF
285            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
286            RETVAL=$?
287            if test "x${RETVAL}" = x0 ; then
288                p_CC="$p_CC $c"
289            fi
290        done
291        rm -f ./genmake_hello.c ./genmake_hello
292        if test "x${p_CC}" = x ; then
293            cat 1>&2 <<EOF
294    
295    Error: No C compilers were found in your path.  Please specify one using:
296    
297        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
298        2) the CC or MITGCM_CC environment variables.
299    
300    EOF
301            exit 1
302        else
303            echo "  The possible C compilers found in your path are:"
304            echo "   "$p_CC
305            if test "x$CC" = x ; then
306                CC=`echo $p_CC | $AWK '{print $1}'`
307                echo "  Setting C compiler to: "$CC
308            fi
309        fi
310    
311        #================================================================
312        #  look for possible FORTRAN compilers
313        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
314      p_FC=      p_FC=
315      for c in $tmp ; do      for c in $tmp ; do
316          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 121  EOF Line 327  EOF
327              p_FC="$p_FC $c"              p_FC="$p_FC $c"
328          fi          fi
329      done      done
330        rm -f ./hello.f ./hello
331      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
332          cat 1>&2 <<EOF          cat 1>&2 <<EOF
333    
# Line 128  Error: No Fortran compilers were found i Line 335  Error: No Fortran compilers were found i
335    
336      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
337      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
338      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
339    
340  EOF  EOF
341          exit 1          exit 1
# Line 136  EOF Line 343  EOF
343          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
344          echo "   "$p_FC          echo "   "$p_FC
345          if test "x$FC" = x ; then          if test "x$FC" = x ; then
346              FC=`echo $p_FC | awk '{print $1}'`              FC=`echo $p_FC | $AWK '{print $1}'`
347                echo "  Setting FORTRAN compiler to: "$FC
348          fi          fi
349      fi      fi
350    
351      for i in $p_FC ; do      if test "x$OPTFILE" = x ; then
352          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
353          if test -r $p_OF ; then          if test ! -r $OPTFILE ; then
354              OPTFILE=$p_OF               echo "  I looked for the file "$OPTFILE" but did not find it"
355              echo "  The options file:  $p_OF"          fi
356              echo "    appears to match so we'll use it."      fi
357              break  #    echo "  The options file:  $p_OF"
358          fi  #    echo "    appears to match so we'll use it."
359      done  #   for i in $p_FC ; do
360    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
361    #if test -r $p_OF ; then
362    #    OPTFILE=$p_OF
363    #    echo "  The options file:  $p_OF"
364    #    echo "    appears to match so we'll use it."
365    #    break
366    #fi
367    #   done
368      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
369          cat 1>&2 <<EOF          cat 1>&2 <<EOF
370    
# Line 202  get_pdepend_list()  { Line 418  get_pdepend_list()  {
418      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
419      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
420      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
421          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
422          > ./.pd_tmp          > ./.pd_tmp
423      source ./.pd_tmp      . ./.pd_tmp
424      rm -f ./.pd_tmp      rm -f ./.pd_tmp
425    
426      echo -n "PNAME = "${}      printf "PNAME = "${}
427  }  }
428    
429    
430  #  Explain usage  #  Explain usage
431  usage()  {  usage()  {
432      echo  cat <<EOF
433      echo "Usage: "$0" [OPTIONS]"  
434      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
435      echo    where [OPTIONS] can be:
436      echo "    -help | --help | -h | --h"  
437      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
438      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
439      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
440      echo "    -pdepend NAME | --pdepend NAME"      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
441      echo "      -pdepend=NAME | --pdepend=NAME"        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
442      echo "    -pdefault NAME | --pdefault NAME"            Use "NAME" as the adoptfile.  By default, the file at
443      echo "      -pdefault=NAME | --pdefault=NAME"            "tools/adjoint_options/adjoint_default" will be used.
444      echo "    -make NAME | -m NAME"  
445      echo "      --make=NAME | -m=NAME"      -nooptfile | --nooptfile
446      echo "    -makefile NAME | -mf NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
447      echo "      --makefile=NAME | -mf=NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
448      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"            Use "NAME" as the optfile.  By default, an attempt will be
449      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            made to find an appropriate "standard" optfile in the
450      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"            tools/build_options/ directory.
451      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"  
452      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"      -pdepend NAME | --pdepend NAME
453      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"        -pdepend=NAME | --pdepend=NAME
454      echo "    -disable NAME | --disable NAME"            Get package dependency information from "NAME".
455      echo "      -disable=NAME | --disable=NAME"  
456      echo "    -enable NAME | --enable NAME"      -pdefault NAME | --pdefault NAME
457      echo "      -enable=NAME | --enable=NAME"        -pdefault=NAME | --pdefault=NAME
458      echo "    -standarddirs NAME | --standarddirs NAME"            Get the default package list from "NAME".
459      echo "      -standarddirs=NAME | --standarddirs=NAME"  
460      echo "    -noopt NAME | --noopt NAME"      -make NAME | -m NAME
461      echo "      -noopt=NAME | --noopt=NAME"        --make=NAME | -m=NAME
462  #    echo "    -cpp NAME | --cpp NAME"            Use "NAME" for the MAKE program. The default is "make" but
463  #    echo "      -cpp=NAME | --cpp=NAME"            many platforms, "gmake" is the preferred choice.
464      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"  
465      echo "      -fc=NAME | --fc=NAME"      -makefile NAME | -mf NAME
466      echo "    -[no]ieee | --[no]ieee"        --makefile=NAME | -mf=NAME
467      echo "    -[no]mpi | --[no]mpi"            Call the makefile "NAME".  The default is "Makefile".
468      echo "    -[no]jam | --[no]jam"  
469      echo      -makedepend NAME | -md NAME
470      echo "  and NAME is a string such as:"        --makedepend=NAME | -md=NAME
471      echo            Use "NAME" for the MAKEDEPEND program.
472      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"  
473      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
474      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
475      echo            Specify the location of the MITgcm ROOTDIR as "NAME".
476      echo "  which, depending upon your shell, may need to be single-quoted"            By default, genamke will try to find the location by
477      echo "  if it contains spaces, dashes, or other special characters."            looking in parent directories (up to the 5th parent).
478    
479        -mods NAME | --mods NAME | -mo NAME | --mo NAME
480          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
481              Here, "NAME" specifies a list of directories that are
482              used for additional source code.  Files found in the
483              "mods list" are given preference over files of the same
484              name found elsewhere.
485    
486        -disable NAME | --disable NAME
487          -disable=NAME | --disable=NAME
488              Here "NAME" specifies a list of packages that we don't
489              want to use.  If this violates package dependencies,
490              genamke will exit with an error message.
491    
492        -enable NAME | --enable NAME
493          -enable=NAME | --enable=NAME
494              Here "NAME" specifies a list of packages that we wish
495              to specifically enable.  If this violates package
496              dependencies, genamke will exit with an error message.
497    
498        -standarddirs NAME | --standarddirs NAME
499          -standarddirs=NAME | --standarddirs=NAME
500              Here, "NAME" specifies a list of directories to be
501              used as the "standard" code.
502    
503        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
504          -fc=NAME | --fc=NAME
505              Use "NAME" as the fortran compiler.  By default, genmake
506              will search for a working compiler by trying a list of
507              "usual suspects" such as g77, f77, etc.
508    
509        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
510              Use "NAME" as the C compiler.  By default, genmake
511              will search for a working compiler by trying a list of
512              "usual suspects" such as gcc, c89, cc, etc.
513    
514        -[no]ieee | --[no]ieee
515              Do or don't use IEEE numerics.  Note that this option
516              *only* works if it is supported by the OPTFILE that
517              is being used.
518    
519        -mpi | --mpi
520              Include MPI header files and link to MPI libraries
521        -mpi=PATH | --mpi=PATH
522              Include MPI header files and link to MPI libraries using MPI_ROOT
523              set to PATH. i.e. Include files from \$PATH/include, link to libraries
524              from \$PATH/lib and use binaries from \$PATH/bin.
525    
526        -bash NAME
527              Explicitly specify the Bourne or BASH shell to use
528    
529      While it is most often a single word, the "NAME" variables specified
530      above can in many cases be a space-delimited string such as:
531    
532        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
533        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
534        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
535    
536      which, depending upon your shell, may need to be single-quoted.
537    
538      For more detailed genmake documentation, please see:
539    
540        http://mitgcm.org/devel_HOWTO/
541    
542    EOF
543    
544      exit 1      exit 1
545  }  }
546    
547  #eh3 # This is the generic configuration.  #  Build a CPP macro to automate calling C routines from FORTRAN
548  #eh3 set LN         = ( 'ln -s' )  get_fortran_c_namemangling()  {
549  #eh3 set CPP        = ( '/lib/cpp -P' )  
550  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
551  #eh3 set KPP        = (  )      if test ! "x$FC_NAMEMANGLE" = x ; then
552  #eh3 set FC         = ( 'f77' )          return 0
553  #eh3 set LINK       = $FC      fi
554  #eh3 set MAKEDEPEND = ( 'makedepend' )  
555  #eh3 set INCLUDES   = ( -I. )      default_nm="#define FC_NAMEMANGLE(X) X ## _"
556  #eh3 set FFLAGS     = (  )      
557  #eh3 set FOPTIM     = (  )      cat > genmake_test.c <<EOF
558  #eh3 set CFLAGS     = (  )  void tcall( char * string ) { tsub( string ); }
559  #eh3 set KFLAGS1    = (  )  EOF
560  #eh3 set KFLAGS2    = (  )      $MAKE genmake_test.o >> genmake_warnings 2>&1
561  #eh3 set LIBS       = (  )      RETVAL=$?
562  #eh3 set KPPFILES   = (  )      if test "x$RETVAL" != x0 ; then
563  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )          FC_NAMEMANGLE=$default_nm
564  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )          cat <<EOF>> genmake_errors
565    
566    WARNING: C test compile fails
567    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
568    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
569    EOF
570            return 1
571        fi
572        c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
573        RETVAL=$?
574        if test "x$RETVAL" != x0 ; then
575            FC_NAMEMANGLE=$default_nm
576            cat <<EOF>> genmake_warnings
577    
578    WARNING: The "nm" command failed.
579    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
580    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
581    EOF
582            return 1
583        fi
584        cat > genmake_tcomp.f <<EOF
585          subroutine tcall( string )
586          character*(*) string
587          call tsub( string )
588          end
589    EOF
590        $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1
591        RETVAL=$?
592        if test "x$RETVAL" != x0 ; then
593            FC_NAMEMANGLE=$default_nm
594            cat <<EOF>> genmake_warnings
595    
596    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
597    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
598    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
599    EOF
600            return 1
601        fi
602        f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
603        RETVAL=$?
604        if test "x$RETVAL" != x0 ; then
605            FC_NAMEMANGLE=$default_nm
606            cat <<EOF>> genmake_warnings
607    
608    WARNING: The "nm" command failed.
609    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
610    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
611    EOF
612            return 1
613        fi
614    
615        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
616        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
617        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
618        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
619    
620        nmangle="X"
621        if test "x$c_a" != "x$f_a" ; then
622            comm="echo x$f_a | sed -e 's|x$c_a||'"
623            a=`eval $comm`
624            nmangle="$a ## $nmangle"
625        fi
626        if test "x$c_b" != "x$f_b" ; then
627            comm="echo x$f_b | sed -e 's|x$c_b||'"
628            b=`eval $comm`
629            nmangle="$nmangle ## $b"
630        fi
631    
632        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
633    
634        #  cleanup the testing files
635        rm -f genmake_tcomp.* genmake_test.*
636    }
637    
638    
639    check_HAVE_CLOC()  {
640        get_fortran_c_namemangling
641        cat <<EOF > genmake_tc_1.c
642    $FC_NAMEMANGLE
643    #include <stdio.h>
644    #include <stdlib.h>
645    #include <unistd.h>
646    #include <assert.h>
647    #include <sys/time.h>
648    void FC_NAMEMANGLE(cloc) ( double *curtim )
649    {
650     struct timeval tv1;
651     gettimeofday(&tv1 , (void *)NULL );
652     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
653     *curtim = *curtim/1.E6;
654    }
655    EOF
656        make genmake_tc_1.o >> genmake_tc.log 2>&1
657        RET_C=$?
658        cat <<EOF > genmake_tc_2.f
659          program hello
660          Real*8 wtime
661          external cloc
662          call cloc(wtime)
663          print *," HELLO WORLD", wtime
664          end program hello
665    EOF
666        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
667        RET_F=$?
668        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
669        RETVAL=$?
670        if test "x$RETVAL" = x0 ; then
671            HAVE_CLOC=t
672            DEFINES="$DEFINES -DHAVE_CLOC"
673        fi
674        rm -f genmake_tc*
675    }
676    
677    
678    check_HAVE_STAT()  {
679        get_fortran_c_namemangling
680        cat <<EOF > genmake_tc_1.c
681    $FC_NAMEMANGLE
682    #include <stdio.h>
683    #include <stdlib.h>
684    #include <unistd.h>
685    #include <sys/stat.h>
686    #include <sys/types.h>
687    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
688    {
689        char name[512];
690        struct stat astat;
691    
692        name[0] = 'a'; name[1] = '\0';
693        if (! stat(name, &astat))
694            *nbyte = (int)(astat.st_size);
695        else
696            *nbyte = -1;
697    }
698    EOF
699        make genmake_tc_1.o >> genmake_tc.log 2>&1
700        RET_C=$?
701        cat <<EOF > genmake_tc_2.f
702          program hello
703          integer nbyte
704          call tfsize(nbyte)
705          print *," HELLO WORLD", nbyte
706          end program hello
707    EOF
708        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
709        RET_F=$?
710        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
711        RETVAL=$?
712        if test "x$RETVAL" = x0 ; then
713            HAVE_STAT=t
714            DEFINES="$DEFINES -DHAVE_STAT"
715        fi
716        rm -f genmake_tc*
717    }
718    
719    
720    check_netcdf_libs()  {
721        echo "" > genmake_tnc.log
722        cat <<EOF > genmake_tnc.for
723          program fgennc
724    #include "netcdf.inc"
725          integer iret, ncid, xid
726          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
727          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
728          iret = nf_def_dim(ncid, 'X', 11, xid)
729          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
730          iret = nf_close(ncid)
731          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
732          end
733    EOF
734        echo "Executing:" > genmake_tnc.log
735        echo "  $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f" \
736            > genmake_tnc.log
737        RET_CPP=f
738        $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \
739            &&  RET_CPP=t
740        if test "x$RET_CPP" = xf ; then
741            echo "  WARNING: CPP failed to pre-process the netcdf test." \
742                > genmake_tnc.log
743            echo "    Please check that \$INCLUDES is properly set." \
744                > genmake_tnc.log
745        fi
746        echo "Executing:" > genmake_tnc.log
747        echo "  $FC $FFLAGS $FOPTIM -c genmake_tnc.f" > genmake_tnc.log
748        echo "  $LINK -o genmake_tnc.o $LIBS" > genmake_tnc.log
749        $FC $FFLAGS $FOPTIM -c genmake_tnc.f >> genmake_tnc.log 2>&1  \
750            &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
751        RET_COMPILE=$?
752    
753        #EH3  Remove test program execution for machines that either disallow
754        #EH3  execution or cannot support it (eg. cross-compilers)
755        #EH3
756        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
757        #EH3 RETVAL=$?
758        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
759    
760        if test "x$RET_COMPILE" = x0 ; then
761            HAVE_NETCDF=t
762        else
763            # try again with "-lnetcdf" added to the libs
764            $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \
765                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.f >> genmake_tnc.log 2>&1  \
766                &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
767            RET_COMPILE=$?
768            if test "x$RET_COMPILE" = x0 ; then
769                LIBS="$LIBS -lnetcdf"
770                HAVE_NETCDF=t
771            else
772                cat genmake_tnc.log >> genmake_warnings
773            fi
774        fi
775        rm -f genmake_tnc*
776    }
777    
778    
779    
780    ###############################################################################
781    #   Sequential part of script starts here
782    ###############################################################################
783    
784  #  Set defaults here  #  Set defaults here
785  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 289  LN= Line 789  LN=
789  S64=  S64=
790  KPP=  KPP=
791  FC=  FC=
792    #CC=gcc
793    CPP=
794  LINK=  LINK=
795  DEFINES="-DWORDLENGTH=4"  DEFINES=
796  PACKAGES=  PACKAGES=
797  ENABLE=  ENABLE=
798  DISABLE=  DISABLE=
799  MAKEFILE=  MAKEFILE=
800  MAKEDEPEND=  #MAKEDEPEND=
801  PDEPEND=  PDEPEND=
802  DUMPSTATE=t  DUMPSTATE=t
803  PDEFAULT=  PDEFAULT=
804  OPTFILE=  OPTFILE=
805  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
806  FFLAGS=  FFLAGS=
807  FOPTIM=  FOPTIM=
808  CFLAGS=  CFLAGS=
809  KFLAGS1=  KFLAGS1=
810  KFLAGS2=  KFLAGS2=
811    #LDADD=
812  LIBS=  LIBS=
813  KPPFILES=  KPPFILES=
814  NOOPTFILES=  NOOPTFILES=
815  NOOPTFLAGS=  NOOPTFLAGS=
816    MPI=
817    MPIPATH=
818    
819    # DEFINES checked by test compilation
820    HAVE_SYSTEM=
821    HAVE_FDATE=
822    FC_NAMEMANGLE=
823    HAVE_CLOC=
824    HAVE_STAT=
825    HAVE_NETCDF=
826    HAVE_ETIME=
827    
828  MODS=  MODS=
829  TOOLSDIR=  TOOLSDIR=
830  SOURCEDIRS=  SOURCEDIRS=
831  INCLUDEDIRS=  INCLUDEDIRS=
832  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
833    
834    G2ARGS=
835    BASH=
836  PWD=`pwd`  PWD=`pwd`
837  MAKE=make  MAKE=make
838  THISHOSTNAME=`hostname`  AWK=awk
839    THISHOST=`hostname`
840  THISCWD=`pwd`  THISCWD=`pwd`
841  THISDATE=`date`  THISDATE=`date`
842    THISUSER=`echo $USER`
843    THISVER=
844  MACHINE=`uname -a`  MACHINE=`uname -a`
845  EXECUTABLE=  EXECUTABLE=
846  EXEHOOK=  EXEHOOK=
# Line 331  IEEE= Line 850  IEEE=
850  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
851      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
852  fi  fi
853    FS=
854    FS90=
855    
856  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
857  AD_OPTFILE=  AD_OPTFILE=
858    TAF=
859    AD_TAF_FLAGS=
860    FTL_TAF_FLAGS=
861    SVD_TAF_FLAGS=
862    TAF_EXTRA=
863    TAMC=
864    AD_TAMC_FLAGS=
865    FTL_TAF_FLAGS=
866    SVD_TAMC_FLAGS=
867    TAMC_EXTRA=
868    
869    
870  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
871  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
872  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"
873    
874  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
875  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
876  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
877  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
878  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
879    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
880    
881  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
882  gm_s7="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF DIFF_FLAGS AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
883  gm_s8="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
884  gm_s9=""  gm_s12="TAF_EXTRA TAMC_EXTRA"
885    
886  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
887    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
888    
889    cat <<EOF
890    
891    GENMAKE :
892    
893    A program for GENerating MAKEfiles for the MITgcm project.  For a
894    quick list of options, use "genmake -h" or for more detail see:
895    
896      http://mitgcm.org/devel_HOWTO/
897    
898    EOF
899    
 echo  
900  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
901  gm_local="genmake_local"  gm_local="genmake_local"
902  for i in . $MODS ; do  for i in . $MODS ; do
903      if test -r $i/$gm_local ; then      if test -r $i/$gm_local ; then
904          source $i/$gm_local          . $i/$gm_local
905          break          break
906      fi      fi
907  done  done
908  echo -n "  getting local config information:  "  printf "  getting local config information:  "
909  if test -e $gm_local ; then  if test -f $gm_local ; then
910      echo "using $gm_local"      echo "using $gm_local"
911      source $gm_local      . $gm_local
912      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
913      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
914  else  else
915      echo "none found"      echo "none found"
916  fi  fi
917    
918  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
919  #OPTIONS=  #OPTIONS=
920  #n=0  #n=0
921  #for i ; do  #for i ; do
# Line 384  fi Line 927  fi
927  #done  #done
928  #parse_options  #parse_options
929  ac_prev=  ac_prev=
930  for ac_option ; do  for ac_option in "$@" ; do
931    
932        G2ARGS="$G2ARGS \"$ac_option\""
933    
934      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
935      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 407  for ac_option ; do Line 952  for ac_option ; do
952          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
953              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
954                    
955          -adoptfile | --adoptfile | -ad | --ad)          -adoptfile | --adoptfile | -adof | --adof)
956              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
957          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
958              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
# Line 427  for ac_option ; do Line 972  for ac_option ; do
972          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
973              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
974                    
975            -bash | --bash)
976                ac_prev=BASH ;;
977            -bash=* | --bash=*)
978                BASH=$ac_optarg ;;
979            
980            -makedepend | --makedepend | -md | --md)
981                ac_prev=MAKEDEPEND ;;
982            -makedepend=* | --makedepend=* | -md=* | --md=*)
983                MAKEDEPEND=$ac_optarg ;;
984            
985          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
986              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
987          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
988              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
989                    
990          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
991              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
992          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
993              PLATFORM=$ac_optarg ;;              echo
994                usage
995                ;;
996                    
997          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
998              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 462  for ac_option ; do Line 1019  for ac_option ; do
1019          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
1020              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
1021    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
1022  #           -cpp | --cpp)  #           -cpp | --cpp)
1023  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1024  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1025  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1026                        
1027            -cc | --cc)
1028                ac_prev=CC ;;
1029            -cc=* | --cc=*)
1030                CC=$ac_optarg ;;
1031            
1032          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1033              ac_prev=FC ;;              ac_prev=FC ;;
1034          -fc=* | --fc=*)          -fc=* | --fc=*)
1035              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1036                    
1037            -fs | --fs)
1038                ac_prev=FS ;;
1039            -fs=* | --fs=*)
1040                FS=$ac_optarg ;;
1041            
1042            -fs90 | --fs90)
1043                ac_prev=FS90 ;;
1044            -fs90=* | --fs90=*)
1045                FS90=$ac_optarg ;;
1046            
1047          -ieee | --ieee)          -ieee | --ieee)
1048              IEEE=true ;;              IEEE=true ;;
1049          -noieee | --noieee)          -noieee | --noieee)
1050              IEEE= ;;              IEEE= ;;
1051            
1052          -mpi | --mpi)          -mpi | --mpi)
1053              MPI=true ;;              MPI=true ;;
1054          -nompi | --nompi)          -mpi=* | --mpi=*)
1055              MPI= ;;              MPIPATH=$ac_optarg
1056                MPI=true ;;
1057                    
1058          -jam | --jam)  #       -jam | --jam)
1059              JAM=1 ;;  #           JAM=1 ;;
1060          -nojam | --nojam)  #       -nojam | --nojam)
1061              JAM=0 ;;  #           JAM=0 ;;
1062                    
1063          -ds | --ds)          -ds | --ds)
1064              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1065                    
1066            -taf_extra | --taf_extra)
1067                ac_prev=TAF_EXTRA ;;
1068            -taf_extra=* | --taf_extra=*)
1069                TAF_EXTRA=$ac_optarg ;;
1070    
1071            -tamc_extra | --tamc_extra)
1072                ac_prev=TAMC_EXTRA ;;
1073            -tamc_extra=* | --tamc_extra=*)
1074                TAMC_EXTRA=$ac_optarg ;;
1075    
1076          -*)          -*)
1077              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1078              usage              usage
# Line 521  if test -f ./.genmakerc ; then Line 1099  if test -f ./.genmakerc ; then
1099      echo      echo
1100  fi  fi
1101    
1102    #  Find the MITgcm ${ROOTDIR}
1103  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1104      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`
1105        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then
1106          ROOTDIR=".."          ROOTDIR=".."
1107      else      else
1108          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1109              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1110                  ROOTDIR=$d                  ROOTDIR=$d
1111                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1112                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1113                  break                  break
1114              fi              fi
# Line 546  if test ! -d ${ROOTDIR} ; then Line 1126  if test ! -d ${ROOTDIR} ; then
1126      exit 1      exit 1
1127  fi  fi
1128    
1129    #  Find the MITgcm ${THISVER}
1130    if test -f "${ROOTDIR}/doc/tag-index" ; then
1131        THISVER=`grep checkpoint ${ROOTDIR}/doc/tag-index | head -1`
1132    fi
1133    
1134  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1135  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1136      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 559  fi Line 1144  fi
1144  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
1145      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1146          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
1147          source "$OPTFILE"          . "$OPTFILE"
1148          RETVAL=$?          RETVAL=$?
1149          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1150              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1151              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1152              exit 1              exit 1
1153          fi          fi
# Line 575  if test "x$OPTFILE" != xNONE ; then Line 1160  if test "x$OPTFILE" != xNONE ; then
1160      fi      fi
1161  fi  fi
1162    
1163    #  Check for broken systems that cannot correctly distinguish *.F and *.f files
1164    # check_for_broken_Ff
1165    
1166  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:  "
1167  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1168      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
# Line 586  fi Line 1174  fi
1174  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
1175      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1176          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1177          source "$AD_OPTFILE"          . "$AD_OPTFILE"
1178          RETVAL=$?          RETVAL=$?
1179          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1180              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1181              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1182              exit 1              exit 1
1183          fi          fi
# Line 602  if test "x${AD_OPTFILE}" != xNONE ; then Line 1190  if test "x${AD_OPTFILE}" != xNONE ; then
1190      fi      fi
1191  fi  fi
1192    
1193  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1194  #  and abort!  #  either set defaults or complain and abort!
1195    if test ! "x$BASH" = x ; then
1196        # add a trailing space so that it works within the Makefile syntax (see below)
1197        BASH="$BASH "
1198    fi
1199  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1200      cat <<EOF 1>&2      cat <<EOF 1>&2
1201    
# Line 614  Error: no Fortran compiler: please speci Line 1206  Error: no Fortran compiler: please speci
1206  EOF  EOF
1207      exit 1      exit 1
1208  fi  fi
1209    if test "x$CC" = x ; then
1210        CC=cc
1211    #     cat <<EOF 1>&2
1212    # Error: no C compiler: please specify using one of the following:
1213    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1214    #   2) the "-cc=XXX" command-line option
1215    #   3) the "./genmake_local" file
1216    # EOF
1217    #     exit 1
1218    fi
1219  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1220      LINK=$FC      LINK=$FC
1221  fi  fi
1222    if test "x$MAKE" = x ; then
1223        MAKE="make"
1224    fi
1225  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1226      CPP="cpp"      CPP=cpp
1227  fi  fi
1228    #EH3 === UGLY ===
1229    #  The following is an ugly little hack to check for $CPP in /lib/ and
1230    #  it should eventually be replaced with a more general function that
1231    #  searches a combo of the user's path and a list of "usual suspects"
1232    #  to find the correct location for binaries such as $CPP.
1233    for i in " " "/lib/" ; do
1234        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1235    done
1236    #EH3 === UGLY ===
1237  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1238  RETVAL=$?  RETVAL=$?
1239  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 629  Error: C pre-processor "$CPP" failed the Line 1243  Error: C pre-processor "$CPP" failed the
1243    
1244    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1245    2) the "./genmake_local" file    2) the "./genmake_local" file
1246      3) with the CPP environment variable
1247    
1248  EOF  EOF
1249      exit 1      exit 1
1250  else  else
1251      rm -f test_cpp      rm -f test_cpp
1252  fi  fi
1253  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
1254      MAKEDEPEND=makedepend  if test "x$LN" = x ; then
1255        LN="ln -s"
1256    fi
1257    echo "test" > genmake_test_ln
1258    $LN genmake_test_ln genmake_tlink
1259    RETVAL=$?
1260    if test "x$RETVAL" != x0 ; then
1261        cat <<EOF 1>&2
1262    
1263    Error: The command "ln -s" failed -- please specify a working soft-link
1264      command in the optfile.
1265    
1266    EOF
1267        exit 1
1268    fi
1269    rm -f genmake_test_ln genmake_tlink
1270    
1271    #  Check for broken *.F/*.f handling and fix if possible
1272    check_for_broken_Ff
1273    
1274    if test ! "x$MPI" = x ; then
1275          echo "  Turning on MPI cpp macros"
1276          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1277    fi
1278    
1279    printf "\n===  Checking system libraries  ===\n"
1280    printf "  Do we have the system() command using $FC...  "
1281    cat > genmake_tcomp.f <<EOF
1282          program hello
1283          call system('echo hi')
1284          end
1285    EOF
1286    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
1287    RETVAL=$?
1288    if test "x$RETVAL" = x0 ; then
1289        HAVE_SYSTEM=t
1290        DEFINES="$DEFINES -DHAVE_SYSTEM"
1291        echo "yes"
1292    else
1293        HAVE_SYSTEM=
1294        echo "no"
1295    fi
1296    rm -f genmake_tcomp*
1297    
1298    printf "  Do we have the fdate() command using $FC...  "
1299    cat > genmake_tcomp.f <<EOF
1300          program hello
1301          CHARACTER(128) string
1302          string = ' '
1303          call fdate( string )
1304          print *, string
1305          end
1306    EOF
1307    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
1308    RETVAL=$?
1309    if test "x$RETVAL" = x0 ; then
1310        HAVE_FDATE=t
1311        DEFINES="$DEFINES -DHAVE_FDATE"
1312        echo "yes"
1313    else
1314        HAVE_FDATE=
1315        echo "no"
1316    fi
1317    rm -f genmake_tcomp*
1318    
1319    printf "  Do we have the etime() command using $FC...  "
1320    cat > genmake_tcomp.f <<EOF
1321          program hello
1322          REAL*4 ACTUAL, TARRAY(2)
1323          EXTERNAL ETIME
1324          REAL*4 ETIME
1325          actual = etime( tarray )
1326          print *, tarray
1327          end
1328    EOF
1329    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
1330    RETVAL=$?
1331    if test "x$RETVAL" = x0 ; then
1332        HAVE_ETIME=t
1333        DEFINES="$DEFINES -DHAVE_ETIME"
1334        echo "yes"
1335    else
1336        HAVE_ETIME=
1337        echo "no"
1338    fi
1339    rm -f genmake_tcomp*
1340    
1341    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1342    check_HAVE_CLOC
1343    if test "x$HAVE_CLOC" != x ; then
1344        echo "yes"
1345    else
1346        echo "no"
1347    fi
1348    rm -f genmake_t*
1349    
1350    printf "  Can we use stat() through C calls...  "
1351    check_HAVE_STAT
1352    if test "x$HAVE_STAT" != x ; then
1353        echo "yes"
1354    else
1355        echo "no"
1356    fi
1357    rm -f genmake_t*
1358    
1359    printf "  Can we create NetCDF-enabled binaries...  "
1360    check_netcdf_libs
1361    if test "x$HAVE_NETCDF" != x ; then
1362        echo "yes"
1363    else
1364        echo "no"
1365  fi  fi
1366    
1367    
1368  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1369  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1370  for d in $MODS ; do  for d in $MODS ; do
1371      if test ! -d $d ; then      if test ! -d $d ; then
1372          echo          echo
1373          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1374          exit 1          exit 1
1375      else      else
1376          echo -n " $d"          printf " $d"
1377          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1378          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1379      fi      fi
# Line 662  if test "x${PLATFORM}" = x ; then Line 1388  if test "x${PLATFORM}" = x ; then
1388  fi  fi
1389    
1390  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1391      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`
1392        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1393          EXEDIR=../exe          EXEDIR=../exe
1394      else      else
1395          EXEDIR=.          EXEDIR=.
# Line 677  if test "x${TOOLSDIR}" = x ; then Line 1404  if test "x${TOOLSDIR}" = x ; then
1404      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1405  fi  fi
1406  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1407      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1408      exit 1      exit 1
1409  fi  fi
1410  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1411      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1412        RETVAL=$?
1413        if test "x${RETVAL}" = x0 ; then
1414            S64='$(TOOLSDIR)/set64bitConst.sh'
1415        else
1416            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1417            RETVAL=$?
1418            if test "x${RETVAL}" = x0 ; then
1419                S64='$(TOOLSDIR)/set64bitConst.csh'
1420            else
1421                cat <<EOF
1422    
1423    ERROR: neither of the two default scripts:
1424    
1425        ${TOOLSDIR}/set64bitConst.sh
1426        ${TOOLSDIR}/set64bitConst.csh
1427    
1428      are working so please check paths or specify (with \$S64) a
1429      working version of this script.
1430    
1431    EOF
1432                exit 1
1433            fi
1434        fi
1435  fi  fi
1436    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1437    
1438  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1439    
# Line 691  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 1442  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1442  #  they appear as regular source code  #  they appear as regular source code
1443  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1444      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1445      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
1446      RETVAL=$?      RETVAL=$?
1447      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1448          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1449      else      else
1450          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1451          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1452          exit 1          exit 1
1453      fi      fi
1454  fi  fi
1455    
1456    #same for exch2
1457    if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then
1458        echo "  Making source files in exch2 from  templates"
1459        ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1
1460        RETVAL=$?
1461        if test "x${RETVAL}" = x0 ; then
1462            rm -f make_exch2.errors
1463        else
1464            echo "Error: problem encountered while building source files in exch2:"
1465            cat make_exch2.errors 1>&2
1466            exit 1
1467        fi
1468    fi
1469    
1470  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1471  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1472      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 721  echo "  getting package dependency info Line 1486  echo "  getting package dependency info
1486  #  Strip the comments and then convert the dependency file into  #  Strip the comments and then convert the dependency file into
1487  #  two arrays: PNAME, DNAME  #  two arrays: PNAME, DNAME
1488  cat $PDEPEND | sed -e 's/#.*$//g' \  cat $PDEPEND | sed -e 's/#.*$//g' \
1489      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
1490      > ./.pd_tmp      > ./.pd_tmp
1491  RETVAL=$?  RETVAL=$?
1492  if test ! "x${RETVAL}" = x0 ; then  if test ! "x${RETVAL}" = x0 ; then
1493      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
1494      exit 1      exit 1
1495  fi  fi
1496  source ./.pd_tmp  . ./.pd_tmp
1497  rm -f ./.pd_tmp  rm -f ./.pd_tmp
1498    
1499  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1500  #  file should eventually be added so that, for convenience, one can  #  file should eventually be added so that, for convenience, one can
1501  #  specify groups of packages using names like "ocean" and "atmosphere".  #  specify groups of packages using names like "ocean" and "atmosphere".
1502  echo  -n "  checking default package list:  "  echo "  checking default package list:  "
1503  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1504      for i in "." $MODS ; do      for i in "." $MODS ; do
1505          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
# Line 747  if test "x${PDEFAULT}" = x ; then Line 1512  if test "x${PDEFAULT}" = x ; then
1512      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1513  fi  fi
1514  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1515      echo "default packages file disabled"      echo "    default packages file disabled"
1516  else  else
1517      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1518          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1519      else      else
1520          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1521          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1522          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1523          RETVAL=$?          RETVAL=$?
1524          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1525              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1526              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1527              exit 1              exit 1
1528          fi          fi
# Line 766  else Line 1530  else
1530              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1531          done          done
1532          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1533          expand_pkg_groups          RET=1
1534            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1535          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1536      fi      fi
1537  fi  fi
1538    
1539  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1540    for i in $PACKAGES ; do
1541        echo $i >> ./.tmp_pack
1542    done
1543    for i in `grep  "-" ./.tmp_pack` ; do
1544        j=`echo $i | sed 's/[-]//'`
1545        DISABLE="$DISABLE $j"
1546    done
1547  pack=  pack=
1548  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1549      addit="t"      addit="t"
# Line 788  PACKAGES="$pack" Line 1560  PACKAGES="$pack"
1560  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1561  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1562  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1563    # Test if each explicitly referenced package exists
1564  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1565      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1566        if test ! -d "$ROOTDIR/pkg/$j" ; then
1567          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1568          exit 1          exit 1
1569      fi      fi
1570      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1571  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1572  PACKAGES=  PACKAGES=
1573  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1574      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1575  done  done
1576    rm -f ./.tmp_pack
1577  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1578    
1579    #  Check availability of NetCDF and then either build the MNC template
1580    #  files or delete mnc from the list of available packages.
1581    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1582    RETVAL=$?
1583    if test "x$RETVAL" = x0 ; then
1584        if test "x$HAVE_NETCDF" != xt ; then
1585            cat <<EOF
1586    
1587    *********************************************************************
1588    WARNING: the "mnc" package was enabled but tests failed to compile
1589      NetCDF applications.  Please check that:
1590    
1591      1) NetCDF is correctly installed for this compiler and
1592      2) the LIBS variable (within the "optfile") specifies the correct
1593           NetCDF library to link against.
1594    
1595      Due to this failure, the "mnc" package is now DISABLED.
1596    *********************************************************************
1597    
1598    EOF
1599            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
1600            DISABLE="$DISABLE mnc"
1601        else
1602            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
1603            RETVAL=$?
1604            if test "x${RETVAL}" = x0 ; then
1605                rm -f make_mnc.errors
1606            else
1607                echo "Error: problem encountered while building source files in pkg/mnc:"
1608                cat make_mnc.errors 1>&2
1609                exit 1
1610            fi
1611        fi
1612    fi
1613    
1614  echo "  applying package dependency rules"  echo "  applying package dependency rules"
1615  ck=  ck=
1616  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
# Line 867  while test "x$ck" != xtt ; do Line 1675  while test "x$ck" != xtt ; do
1675              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
1676              exit 1              exit 1
1677          fi          fi
1678          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
1679            #i=$(( $i + 1 ))
1680      done      done
1681      ck=$ck"t"      ck=$ck"t"
1682  done  done
# Line 886  for i in $PACKAGES ; do Line 1695  for i in $PACKAGES ; do
1695      fi      fi
1696  done  done
1697    
 #  This is compatible with the old genmake.  The "DISABLE_*" flags  
 #  need to be replaced by the "ALLOW_*" flags set below.  
 #  
 # echo -n "  Setting package-specific CPP flags:  "  
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
1698  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
1699  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
 cat <<EOF >$PACKAGES_DOT_H".tmp"  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
   
 C  Packages disabled by genmake:  
 EOF  
1700  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
1701  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
1702  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
1703  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
1704  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
1705  all_pack=  all_pack=
1706    DISABLED_PACKAGES=
1707  for n in $names ; do  for n in $names ; do
1708      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
1709          has_pack="f"          has_pack="f"
# Line 935  for n in $names ; do Line 1714  for n in $names ; do
1714              fi              fi
1715          done          done
1716          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1717              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1718              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
 #           DEFINES="$DEFINES -U$undef"  
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
1719          fi          fi
1720      fi      fi
1721  done  done
1722  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
1723  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1724      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1725      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
1726  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
1727    
1728  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1729      case $i in      case $i in
1730          aim_v23)          aim_v23)
1731              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
1732              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
1733              ;;              ;;
1734      esac      esac
1735  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1736    
1737  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
1738    
1739  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1740  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1741  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1742      STANDARDDIRS="eesupp model"      STANDARDDIRS="eesupp model"
1743  fi  fi
1744  for d in $STANDARDDIRS ; do  if test "x$STANDARDDIRS" != x ; then
1745      adr="$ROOTDIR/$d/src"      for d in $STANDARDDIRS ; do
1746      if test ! -d $adr ; then          adr="$ROOTDIR/$d/src"
1747          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1748          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1749          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1750      else              exit 1
1751          SOURCEDIRS="$SOURCEDIRS $adr"          else
1752      fi              SOURCEDIRS="$SOURCEDIRS $adr"
1753      adr="$ROOTDIR/$d/inc"          fi
1754      if test ! -d $adr ; then          adr="$ROOTDIR/$d/inc"
1755          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1756          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1757          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1758      else              exit 1
1759          INCLUDEDIRS="$INCLUDEDIRS $adr"          else
1760      fi              INCLUDEDIRS="$INCLUDEDIRS $adr"
1761  done          fi
1762        done
1763    fi
1764    
1765  echo " Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
1766  echo " of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
1767  CPP_OPTIONS=  CPP_OPTIONS=
1768    CPP_EEOPTIONS=
1769  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
1770    names=`ls -1 "$ROOTDIR/pkg"`
1771  for i in $spaths ; do  for i in $spaths ; do
1772      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
1773      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
1774          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
1775          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
1776          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
1777            for n in $names ; do
1778                test_for_package_in_cpp_options $CPP_OPTIONS $n
1779            done
1780        fi
1781        try="$i/CPP_EEOPTIONS.h"
1782        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
1783            echo "    found CPP_EEOPTIONS=\"$try\""
1784            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
1785    #**** not yet enabled ****
1786    #        test_for_mpi_in_cpp_eeoptions $try
1787    #**** not yet enabled ****
1788            CPP_EEOPTIONS="$try"
1789      fi      fi
1790  done  done
1791  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
1792      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
1793      exit 1      exit 1
1794  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
1795    
1796  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
1797  #  compiler.  #  compiler.
# Line 1055  for i in $SOURCEDIRS ; do Line 1806  for i in $SOURCEDIRS ; do
1806      done      done
1807  done  done
1808    
 cat <<EOF > adjoint_sed  
 s/call adopen(/call adopen ( mythid,\\  
      \&           /g  
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
1809    
1810  echo  echo
1811  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
1812  echo "  setting INCLUDES"  echo "  setting INCLUDES"
1813  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
1814      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
1815          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
1816      fi      fi
1817  done  done
# Line 1083  rm -rf .links.tmp Line 1821  rm -rf .links.tmp
1821  mkdir .links.tmp  mkdir .links.tmp
1822  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
1823  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
1824  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
1825  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
1826  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
1827  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
1828  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
1829  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1830  for d in $alldirs ; do  for d in $alldirs ; do
1831      deplist=      deplist=
# Line 1096  for d in $alldirs ; do Line 1834  for d in $alldirs ; do
1834      for sf in $sfiles ; do      for sf in $sfiles ; do
1835          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1836              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1837                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  case $d/$sf in
1838                  touch .links.tmp/$sf                    ./$PACKAGES_DOT_H)
1839                  deplist="$deplist $sf"                          ;;
1840                      ./AD_CONFIG.h)
1841                            ;;
1842                      ./FC_NAMEMANGLE.h)
1843                            ;;
1844                      ./BUILD_INFO.h)
1845                            ;;
1846                      *)
1847                            touch .links.tmp/$sf
1848                            deplist="$deplist $sf"
1849                            ;;
1850                    esac
1851                    extn=`echo $sf | $AWK -F '.' '{print $NF}'`
1852                  case $extn in                  case $extn in
1853                      F)                      F)
1854                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
1855                          echo -n " $sf" >> srclist.inc                          printf " $sf" >> srclist.inc
1856                          ;;                          ;;
1857                      F90)                      F90)
1858                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> f90srclist.inc
1859                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> f90srclist.inc
1860                          ;;                          ;;
1861                      c)                      c)
1862                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.inc
1863                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.inc
1864                          ;;                          ;;
1865                      h)                      h)
1866                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1867                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hlist.inc
1868                          ;;                          ;;
1869                      flow)                      flow)
1870                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.inc
1871                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.inc
1872                          ;;                          ;;
1873                  esac                  esac
1874              fi              fi
# Line 1138  echo "" >> f90srclist.inc Line 1888  echo "" >> f90srclist.inc
1888  echo "" >> hlist.inc  echo "" >> hlist.inc
1889  echo "" >> ad_flow_files.inc  echo "" >> ad_flow_files.inc
1890    
1891  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
1892      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
1893  fi  fi
1894  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1147  echo "#    $MACHINE" >> $MAKEFILE Line 1897  echo "#    $MACHINE" >> $MAKEFILE
1897  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
1898  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
1899  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
1900  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
1901  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1902  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
1903    
1904    EXE_AD=$EXECUTABLE"_ad"
1905    EXE_FTL=$EXECUTABLE"_ftl"
1906    EXE_SVD=$EXECUTABLE"_svd"
1907    
1908  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1909    #
1910    # OPTFILE="$OPTFILE"
1911  #  #
1912  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
1913  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 1180  TOOLSDIR    = ${TOOLSDIR} Line 1937  TOOLSDIR    = ${TOOLSDIR}
1937    
1938  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
1939  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
1940    EXE_AD      = ${EXE_AD}
1941    EXE_FTL     = ${EXE_FTL}
1942    EXE_SVD     = ${EXE_SVD}
1943    
1944    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1945    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1946    
1947    # These files are created by Makefile
1948    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
1949    
1950  EOF  EOF
1951    
# Line 1198  KPP = ${KPP} Line 1964  KPP = ${KPP}
1964  FC = ${FC}  FC = ${FC}
1965  # Fortran compiler  # Fortran compiler
1966  F90C = ${F90C}  F90C = ${F90C}
1967    # C compiler
1968    CC = ${CC}
1969  # Link editor  # Link editor
1970  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
1971    
1972  # Defines for CPP  # Defines for CPP
1973  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1220  CFLAGS = ${CFLAGS} Line 1988  CFLAGS = ${CFLAGS}
1988  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
1989  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
1990  # Flags and libraries needed for linking  # Flags and libraries needed for linking
1991  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
1992  # Name of the Mekfile  # Name of the Mekfile
1993  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
1994    
# Line 1231  cat csrclist.inc      >> $MAKEFILE Line 1999  cat csrclist.inc      >> $MAKEFILE
1999  cat f90srclist.inc    >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
2000  cat hlist.inc         >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
2001  cat ad_flow_files.inc >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
2002  echo               >> $MAKEFILE  echo >> $MAKEFILE
2003  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
2004  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE
2005  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
2006    echo >> $MAKEFILE
2007    echo '.SUFFIXES:' >> $MAKEFILE
2008    echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE
2009  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
2010  rm -f ad_flow_files.inc  rm -f ad_flow_files.inc
2011    
2012  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2013    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
2014  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2015  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
2016            @echo Creating \$@ ...
2017          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2018  depend:  depend:
2019          @make links          @make links
2020          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
2021          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2022            -rm -f makedepend.out
2023    
2024  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
2025    
2026  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
2027    
# Line 1261  output.txt: \$(EXECUTABLE) Line 2030  output.txt: \$(EXECUTABLE)
2030          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2031    
2032  clean:  clean:
2033          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2034  Clean:  Clean:
2035          @make clean          @make clean
2036          @make cleanlinks          @make cleanlinks
2037          -rm -f Makefile.bak genmake_state genmake_optfile make.log          -rm -f \$(SPECIAL_FILES)
2038            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
2039  CLEAN:  CLEAN:
2040          @make Clean          @make Clean
2041          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2042          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2043          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2044          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) output.txt STD*
2045    
2046  Makefile: makefile  #eh3 Makefile: makefile
2047  makefile:  makefile:
2048          ${0} $@          $THIS_SCRIPT $G2ARGS
2049  cleanlinks:  cleanlinks:
2050          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2051    
2052  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are create by make
2053  .F.f:  ${PACKAGES_DOT_H}:
2054            @echo Creating \$@ ...
2055            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2056    AD_CONFIG.h:
2057            @echo Creating \$@ ...
2058            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2059    FC_NAMEMANGLE.h:
2060            @echo Creating \$@ ...
2061            echo "$FC_NAMEMANGLE" > \$@
2062    
2063    BUILD_INFO.h:
2064            @echo Creating \$@ ...
2065    EOF
2066    
2067    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2068    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2069    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2070    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2071    
2072    cat >>$MAKEFILE <<EOF
2073    
2074    # The normal chain of rules is (  .F - .$FS - .o  )
2075    
2076    ## This nullifies any default implicit rules concerning these two file types:
2077    ## %.o : %.F
2078    
2079    .F.$FS:
2080          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2081  .f.o:  .$FS.o:
2082          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2083  .F90.f90:  .F90.$FS90:
2084          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2085  .f90.o:  .$FS90.o:
2086          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2087  .c.o:  .c.o:
2088          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) -c \$<
2089    
2090  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2091  .F.p:  .F.p:
2092          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2093  .p.f:  .p.$FS:
2094          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2095    
2096  #=========================================  #=========================================
# Line 1303  cleanlinks: Line 2099  cleanlinks:
2099  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2100  TAF            = ${TAF}  TAF            = ${TAF}
2101    
2102    TAF_EXTRA      = ${TAF_EXTRA}
2103    TAMC_EXTRA     = ${TAMC_EXTRA}
2104    
2105  EOF  EOF
2106    
2107  ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"  ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 1318  done Line 2117  done
2117    
2118  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2119  echo >> $MAKEFILE  echo >> $MAKEFILE
2120  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2121  AD_FILES=`cat ad_files`  AD_FILES=`cat ad_files`
2122  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2123      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2124      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2125  done  done
2126  echo >> $MAKEFILE  echo >> $MAKEFILE
2127    rm -f ad_files
2128    
2129  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2130    
2131    # ... AD ...
2132  ad_input_code.f: \$(F77FILES)  adall: ad_taf
2133    adtaf: ad_taf_output.f
2134    adtamc: ad_tamc_output.f
2135    
2136    ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
2137            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2138            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2139            -rm -f ad_config.template
2140            @make \$(F77FILES)
2141          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2142          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
2143    
   
2144  ad_taf_output.f: ad_input_code.f  ad_taf_output.f: ad_input_code.f
2145          \$(TAF) \$(AD_TAF_FLAGS) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
2146          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
2147    
2148  ad_taf: ad_taf_output.o \$(OBJFILES)  adtafonly:
2149          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
2150            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
2151    
2152    ad_taf: ad_taf_output.o \$(OBJFILES)
2153            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2154    
2155  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.f: ad_input_code.f
2156          \$(TAMC) \$(AD_TAMC_FLAGS) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
2157          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f
2158    
2159  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2160          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2161    
2162    adonlyfwd:
2163            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2164    
2165    adtrick:
2166            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2167    
2168  flt_taf_output.f: ad_input_code.f  # ... FTL ...
2169          \$(TAF) \$(FTL_TAF_FLAGS) ad_input_code.f  ftlall: ftl_taf
2170          cat ad_input_code_ad.f | sed -f adjoint_sed > flt_taf_output.f  ftltaf: ftl_taf_output.f
2171    ftltamc: ftl_tamc_output.f
2172  flt_taf: flt_taf_output.o \$(OBJFILES)  
2173          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) flt_taf_output.o \$(LIBS)  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
2174            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2175            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2176            -rm -f ftl_config.template
2177            @make \$(F77FILES)
2178            @make \$(AD_FLOW_FILES)
2179            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
2180    
2181    ftl_taf_output.f: ftl_input_code.f
2182            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
2183            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
2184    
2185    ftltafonly:
2186            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
2187            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
2188    
2189    ftl_taf: ftl_taf_output.o \$(OBJFILES)
2190            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2191    
2192    ftl_tamc_output.f: ftl_input_code.f
2193            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
2194            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f
2195    
2196    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2197            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2198    
2199    
2200    # ... SVD ...
2201    svdtaf: ad_taf_output.f ftl_taf_output.f
2202            @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2203            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2204    svdall: svd_touch svd_taf
2205    
2206    svd_taf: \$(OBJFILES)
2207            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2208    
2209            @echo "--->>> Only COMPILE svd code! <<<---"
2210            @echo "--->>> Assumes you previously <<<---"
2211            @echo "--->>> did make svdtaf        <<<---"
2212    
2213    svd_touch:
2214            @echo "--->>> Only COMPILE svd code! <<<---"
2215            @echo "--->>> Assumes you previously <<<---"
2216            @echo "--->>> did make svdtaf        <<<---"
2217            touch ad_taf_output.f ftl_taf_output.f
2218            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.f
2219            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.f
2220            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2221            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2222            -rm -f ftl_config.template
2223    
2224  #=========================================  #=========================================
2225    
# Line 1374  for i in $KPPFILES ; do Line 2236  for i in $KPPFILES ; do
2236      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2237          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2238      fi      fi
2239      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
2240  done  done
2241    
2242  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1384  for i in $NOOPTFILES ; do Line 2246  for i in $NOOPTFILES ; do
2246      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2247          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2248      fi      fi
2249      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
2250      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
2251  done  done
2252    
# Line 1397  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 2259  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
2259    
2260  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
2261    
2262    # Create special header files
2263    $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
2264    if test ! -f $PACKAGES_DOT_H ; then
2265        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2266    else
2267        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
2268        RETVAL=$?
2269        if test "x$RETVAL" = x0 ; then
2270            rm -f $PACKAGES_DOT_H".tmp"
2271        else
2272            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
2273            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2274        fi
2275    fi
2276    if test ! -f AD_CONFIG.h ; then
2277        $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
2278    fi
2279    
2280    
2281  #  Write the "state" for future records  #  Write the "state" for future records
2282  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
2283      echo -n "" > genmake_state      printf "" > genmake_state
2284      for i in $gm_state ; do      for i in $gm_state ; do
2285          t1="t2=\$$i"          t1="t2=\$$i"
2286          eval $t1          eval $t1

Legend:
Removed from v.1.14  
changed lines
  Added in v.1.111

  ViewVC Help
Powered by ViewVC 1.1.22