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revision 1.11.2.9 by edhill, Fri Oct 3 18:54:16 2003 UTC revision 1.99 by edhill, Mon Sep 27 15:49:48 2004 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99
17      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99
18      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99
19          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99
20          exit 99  }
21      fi  
22      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1  # Search for particular CPP #cmds associated with MPI
23      RETVAL=$?  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
24      if test "x${RETVAL}" = x0 ; then  test_for_mpi_in_cpp_eeoptions() {
25          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"      cpp_options=$1
26          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99
27      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99
28      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99
29        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99
30    }
31    
32    # Search for particular string in a file. Return 1 if detected, 0 if not
33    # usage: test_for_string_in_file file string
34    test_for_string_in_file() {
35        file=$1
36        strng=$2
37        grep -i "$strng" $file > /dev/null 2>&1
38      RETVAL=$?      RETVAL=$?
39      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
40          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
41          exit 99          grep -i "$strng" $file
42            return 1
43      fi      fi
44      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
45  }  }
46    
47  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
# Line 46  expand_pkg_groups() { Line 51  expand_pkg_groups() {
51      PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"      PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"
52      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
53          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
54          cat ./p1.tmp | awk '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
55          matched=0          matched=0
56          for i in $PACKAGES ; do          for i in $PACKAGES ; do
57              line=`grep $i ./p2.tmp`              line=`grep "^ *$i" ./p2.tmp`
58              RETVAL=$?              RETVAL=$?
59              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
60                  matched=1                  matched=1
61                  replace=`echo $line | awk '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
62                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with: $replace"
63                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
64              else              else
# Line 62  expand_pkg_groups() { Line 67  expand_pkg_groups() {
67          done          done
68          PACKAGES=$new_packages          PACKAGES=$new_packages
69          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
70            return $matched
71      else      else
72          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
73      fi      fi
74  }  }
75    
76    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
77    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
78    check_for_broken_Ff()  {
79        #  Do we have defaults for $FS and/or $FS90 ?
80        tfs=f
81        tfs9=f90
82        if test "x$FS" != x ; then
83            tfs="$FS"
84        fi
85        if test "x$FS90" != x ; then
86            tfs9="$FS90"
87        fi
88    
89        #  First check the ability to create a *.F/.f pair.
90        cat <<EOF >> genmake_hello.F
91          program hello
92          write(*,*) 'hi'
93          stop
94          end
95    EOF
96        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
97        RETVAL=$?
98        if test "x$RETVAL" != x0 ; then
99            if test "x$FS" = x ; then
100                FS='for'
101                FS90='fr9'
102                check_for_broken_Ff
103            else
104                cat <<EOF 2>&1
105    ERROR: Your file system cannot distinguish between *.F and *.f files
106      (fails the "cp" test) and this program cannot find a suitable
107      replacement extension.  Please try a different build environment or
108      contact the <MITgcm-support@mitgcm.org> list for help.
109    
110    EOF
111                exit -1
112            fi
113            return
114        fi
115        rm -f genmake_hello.*
116    
117        #  Check the ability of ${MAKE} and ${LN} to use the current set
118        #  of extensions.
119        cat <<EOF >> genmake_hello.F
120          program hello
121          write(*,*) 'hi'
122          stop
123          end
124    EOF
125        test -f Makefile  &&  mv -f Makefile Makefile.bak
126        cat <<EOF >> Makefile
127    %.$tfs : %.F
128    .SUFFIXES:
129    genmake_hello.$tfs: genmake_hello.F
130            $LN genmake_hello.F genmake_hello.$tfs
131    EOF
132        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
133        RETVAL=$?
134        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
135            if test "x$FS" = x ; then
136                FS='for'
137                FS90='fr9'
138                check_for_broken_Ff
139            else
140                cat <<EOF 2>&1
141    ERROR: Your file system cannot distinguish between *.F and *.f files
142      (fails the "make/ln" test) and this program cannot find a suitable
143      replacement extension.  Please try a different build environment or
144      contact the <MITgcm-support@mitgcm.org> list for help.
145    
146    EOF
147                exit -1
148                return
149            fi
150        fi
151        rm -f genmake_hello.* Makefile
152        test -f Makefile  &&  mv -f Makefile.bak Makefile
153    
154        #  If we make it here, use the extensions
155        FS=$tfs
156        FS90=$tfs9
157        return
158    }
159    
160    
161    look_for_makedepend()  {
162    
163        #  The "original" makedepend is part of the Imake system that is
164        #  most often distributed with XFree86 or with an XFree86 source
165        #  package.  As a result, many machines (eg. generic Linux) do not
166        #  have a system-default "makedepend" available.  For those
167        #  systems, we have two fall-back options:
168        #
169        #    1) a makedepend implementation shipped with the cyrus-imapd
170        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
171        #
172        #    2) a known-buggy xmakedpend shell script
173        #
174        #  So the choices are, in order:
175        #
176        #    1) use the user-specified program
177        #    2) use a system-wide default
178        #    3) locally build and use the cyrus implementation
179        #    4) fall back to the buggy local xmakedpend script
180        #
181        if test "x${MAKEDEPEND}" = x ; then
182            which makedepend > /dev/null 2>&1
183            RV0=$?
184            cat <<EOF >> genmake_tc.f
185          program test
186          write(*,*) 'test'
187          stop
188          end
189    EOF
190            makedepend genmake_tc.f > /dev/null 2>&1
191            RV1=$?
192            if test "x${RV0}${RV1}" = x00 ; then
193                MAKEDEPEND=makedepend
194            else
195                echo "    a system-default makedepend was not found."
196                
197                #  Try to build the cyrus implementation
198                build_cyrus_makedepend
199                RETVAL=$?
200                if test "x$RETVAL" != x0 ; then
201                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
202                fi
203                rm -f ./genmake_cy_md
204            fi
205        else
206            #  echo "MAKEDEPEND=${MAKEDEPEND}"
207            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
208            RETVAL=$?
209            if test x"$RETVAL" = x0 ; then
210                build_cyrus_makedepend
211            fi
212        fi
213    }
214    
215    
216    build_cyrus_makedepend()  {
217        rm -f ./genmake_cy_md
218        (
219            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
220                &&  ./configure > /dev/null 2>&1  \
221                &&  make > /dev/null 2>&1
222            if test -x ./makedepend.exe ; then
223                $LN ./makedepend.exe ./makedepend
224            fi
225            ./makedepend ifparser.c > /dev/null 2>&1  \
226                &&  echo "true"
227        ) > ./genmake_cy_md
228        grep true ./genmake_cy_md > /dev/null 2>&1
229        RETVAL=$?
230        rm -f ./genmake_cy_md
231        if test "x$RETVAL" = x0 ; then
232            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
233            return 0
234        else
235            echo "WARNING: unable to build cyrus-imapd-makedepend"
236            return 1
237        fi
238    }
239    
240  # Guess possible config options for this host  # Guess possible config options for this host
241  find_possible_configs()  {  find_possible_configs()  {
242    
243      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
244      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
245      PLATFORM=`echo $tmp2 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
246        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
247        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
248        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
249        PLATFORM=$tmp3
250        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
251      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
252      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
253            
254      echo "test" > test      echo "test" > test
255      ln -s ./test link      ln -s ./test link
# Line 103  find_possible_configs()  { Line 267  find_possible_configs()  {
267          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
268      fi      fi
269    
270      # look for possible fortran compilers      look_for_makedepend
271      tmp="$MITGCM_FC $FC g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"  
272        #================================================================
273        #  look for possible C compilers
274        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"
275        p_CC=
276        for c in $tmp ; do
277            rm -f ./genmake_hello.c  ./genmake_hello
278            cat >> genmake_hello.c << EOF
279    #include <stdio.h>
280    int main(int argc, char **argv) {
281      printf("Hello!\n");
282      return 0;
283    }
284    EOF
285            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
286            RETVAL=$?
287            if test "x${RETVAL}" = x0 ; then
288                p_CC="$p_CC $c"
289            fi
290        done
291        rm -f ./genmake_hello.c ./genmake_hello
292        if test "x${p_CC}" = x ; then
293            cat 1>&2 <<EOF
294    
295    Error: No C compilers were found in your path.  Please specify one using:
296    
297        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
298        2) the CC or MITGCM_CC environment variables.
299    
300    EOF
301            exit 1
302        else
303            echo "  The possible C compilers found in your path are:"
304            echo "   "$p_CC
305            if test "x$CC" = x ; then
306                CC=`echo $p_CC | $AWK '{print $1}'`
307                echo "  Setting C compiler to: "$CC
308            fi
309        fi
310    
311        #================================================================
312        #  look for possible FORTRAN compilers
313        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
314      p_FC=      p_FC=
315      for c in $tmp ; do      for c in $tmp ; do
316          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 121  EOF Line 327  EOF
327              p_FC="$p_FC $c"              p_FC="$p_FC $c"
328          fi          fi
329      done      done
330        rm -f ./hello.f ./hello
331      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
332          cat 1>&2 <<EOF          cat 1>&2 <<EOF
333    
# Line 128  Error: No Fortran compilers were found i Line 335  Error: No Fortran compilers were found i
335    
336      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
337      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
338      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
339    
340  EOF  EOF
341          exit 1          exit 1
# Line 136  EOF Line 343  EOF
343          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
344          echo "   "$p_FC          echo "   "$p_FC
345          if test "x$FC" = x ; then          if test "x$FC" = x ; then
346              FC=`echo $p_FC | awk '{print $1}'`              FC=`echo $p_FC | $AWK '{print $1}'`
347                echo "  Setting FORTRAN compiler to: "$FC
348          fi          fi
349      fi      fi
350    
351      for i in $p_FC ; do      if test "x$OPTFILE" = x ; then
352          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
353          if test -r $p_OF ; then          if test ! -r $OPTFILE ; then
354              OPTFILE=$p_OF               echo "  I looked for the file "$OPTFILE" but did not find it"
355              echo "  The options file:  $p_OF"          fi
356              echo "    appears to match so we'll use it."      fi
357              break  #    echo "  The options file:  $p_OF"
358          fi  #    echo "    appears to match so we'll use it."
359      done  #   for i in $p_FC ; do
360    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
361    #if test -r $p_OF ; then
362    #    OPTFILE=$p_OF
363    #    echo "  The options file:  $p_OF"
364    #    echo "    appears to match so we'll use it."
365    #    break
366    #fi
367    #   done
368      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
369          cat 1>&2 <<EOF          cat 1>&2 <<EOF
370    
# Line 202  get_pdepend_list()  { Line 418  get_pdepend_list()  {
418      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
419      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
420      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
421          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
422          > ./.pd_tmp          > ./.pd_tmp
423      source ./.pd_tmp      . ./.pd_tmp
424      rm -f ./.pd_tmp      rm -f ./.pd_tmp
425    
426      echo -n "PNAME = "${}      printf "PNAME = "${}
427  }  }
428    
429    
430  #  Explain usage  #  Explain usage
431  usage()  {  usage()  {
432      echo  cat <<EOF
433      echo "Usage: "$0" [OPTIONS]"  
434      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
435      echo    where [OPTIONS] can be:
436      echo "    -help | --help | -h | --h"  
437      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
438      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
439      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
440      echo "    -pdepend NAME | --pdepend NAME"      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
441      echo "      -pdepend=NAME | --pdepend=NAME"        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
442      echo "    -pdefault NAME | --pdefault NAME"            Use "NAME" as the adoptfile.  By default, the file at
443      echo "      -pdefault=NAME | --pdefault=NAME"            "tools/adjoint_options/adjoint_default" will be used.
444      echo "    -make NAME | -m NAME"  
445      echo "      --make=NAME | -m=NAME"      -nooptfile | --nooptfile
446      echo "    -makefile NAME | -mf NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
447      echo "      --makefile=NAME | -mf=NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
448      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"            Use "NAME" as the optfile.  By default, an attempt will be
449      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            made to find an appropriate "standard" optfile in the
450      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"            tools/build_options/ directory.
451      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"  
452      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"      -pdepend NAME | --pdepend NAME
453      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"        -pdepend=NAME | --pdepend=NAME
454      echo "    -disable NAME | --disable NAME"            Get package dependency information from "NAME".
455      echo "      -disable=NAME | --disable=NAME"  
456      echo "    -enable NAME | --enable NAME"      -pdefault NAME | --pdefault NAME
457      echo "      -enable=NAME | --enable=NAME"        -pdefault=NAME | --pdefault=NAME
458      echo "    -noopt NAME | --noopt NAME"            Get the default package list from "NAME".
459      echo "      -noopt=NAME | --noopt=NAME"  
460  #    echo "    -cpp NAME | --cpp NAME"      -make NAME | -m NAME
461  #    echo "      -cpp=NAME | --cpp=NAME"        --make=NAME | -m=NAME
462      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"            Use "NAME" for the MAKE program. The default is "make" but
463      echo "      -fc=NAME | --fc=NAME"            many platforms, "gmake" is the preferred choice.
464      echo "    -[no]ieee | --[no]ieee"  
465      echo "    -[no]mpi | --[no]mpi"      -makefile NAME | -mf NAME
466      echo "    -[no]jam | --[no]jam"        --makefile=NAME | -mf=NAME
467      echo            Call the makefile "NAME".  The default is "Makefile".
468      echo "  and NAME is a string such as:"  
469      echo      -makedepend NAME | -md NAME
470      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"        --makedepend=NAME | -md=NAME
471      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"            Use "NAME" for the MAKEDEPEND program.
472      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"  
473      echo      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
474      echo "  which, depending upon your shell, may need to be single-quoted"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
475      echo "  if it contains spaces, dashes, or other special characters."            Specify the location of the MITgcm ROOTDIR as "NAME".
476              By default, genamke will try to find the location by
477              looking in parent directories (up to the 5th parent).
478    
479        -mods NAME | --mods NAME | -mo NAME | --mo NAME
480          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
481              Here, "NAME" specifies a list of directories that are
482              used for additional source code.  Files found in the
483              "mods list" are given preference over files of the same
484              name found elsewhere.
485    
486        -disable NAME | --disable NAME
487          -disable=NAME | --disable=NAME
488              Here "NAME" specifies a list of packages that we don't
489              want to use.  If this violates package dependencies,
490              genamke will exit with an error message.
491    
492        -enable NAME | --enable NAME
493          -enable=NAME | --enable=NAME
494              Here "NAME" specifies a list of packages that we wish
495              to specifically enable.  If this violates package
496              dependencies, genamke will exit with an error message.
497    
498        -standarddirs NAME | --standarddirs NAME
499          -standarddirs=NAME | --standarddirs=NAME
500              Here, "NAME" specifies a list of directories to be
501              used as the "standard" code.
502    
503        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
504          -fc=NAME | --fc=NAME
505              Use "NAME" as the fortran compiler.  By default, genmake
506              will search for a working compiler by trying a list of
507              "usual suspects" such as g77, f77, etc.
508    
509        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
510              Use "NAME" as the C compiler.  By default, genmake
511              will search for a working compiler by trying a list of
512              "usual suspects" such as gcc, c89, cc, etc.
513    
514        -[no]ieee | --[no]ieee
515              Do or don't use IEEE numerics.  Note that this option
516              *only* works if it is supported by the OPTFILE that
517              is being used.
518    
519        -mpi | --mpi
520              Include MPI header files and link to MPI libraries
521        -mpi=PATH | --mpi=PATH
522              Include MPI header files and link to MPI libraries using MPI_ROOT
523              set to PATH. i.e. Include files from \$PATH/include, link to libraries
524              from \$PATH/lib and use binaries from \$PATH/bin.
525    
526        -bash NAME
527              Explicitly specify the Bourne or BASH shell to use
528    
529      While it is most often a single word, the "NAME" variables specified
530      above can in many cases be a space-delimited string such as:
531    
532        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
533        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
534        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
535    
536      which, depending upon your shell, may need to be single-quoted.
537    
538      For more detailed genmake documentation, please see:
539    
540        http://mitgcm.org/devel_HOWTO/
541    
542    EOF
543    
544      exit 1      exit 1
545  }  }
546    
547  #eh3 # This is the generic configuration.  #  Build a CPP macro to automate calling C routines from FORTRAN
548  #eh3 set LN         = ( 'ln -s' )  get_fortran_c_namemangling()  {
549  #eh3 set CPP        = ( '/lib/cpp -P' )  
550  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
551  #eh3 set KPP        = (  )      if test ! "x$FC_NAMEMANGLE" = x ; then
552  #eh3 set FC         = ( 'f77' )          return 0
553  #eh3 set LINK       = $FC      fi
554  #eh3 set MAKEDEPEND = ( 'makedepend' )  
555  #eh3 set INCLUDES   = ( -I. )      default_nm="#define FC_NAMEMANGLE(X) X ## _"
556  #eh3 set FFLAGS     = (  )      
557  #eh3 set FOPTIM     = (  )      cat > genmake_test.c <<EOF
558  #eh3 set CFLAGS     = (  )  void tcall( char * string ) { tsub( string ); }
559  #eh3 set KFLAGS1    = (  )  EOF
560  #eh3 set KFLAGS2    = (  )      $MAKE genmake_test.o >> genmake_warnings 2>&1
561  #eh3 set LIBS       = (  )      RETVAL=$?
562  #eh3 set KPPFILES   = (  )      if test "x$RETVAL" != x0 ; then
563  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )          FC_NAMEMANGLE=$default_nm
564  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )          cat <<EOF>> genmake_errors
565    
566    WARNING: C test compile fails
567    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
568    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
569    EOF
570            return 1
571        fi
572        c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
573        RETVAL=$?
574        if test "x$RETVAL" != x0 ; then
575            FC_NAMEMANGLE=$default_nm
576            cat <<EOF>> genmake_warnings
577    
578    WARNING: The "nm" command failed.
579    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
580    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
581    EOF
582            return 1
583        fi
584        cat > genmake_tcomp.f <<EOF
585          subroutine tcall( string )
586          character*(*) string
587          call tsub( string )
588          end
589    EOF
590        $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1
591        RETVAL=$?
592        if test "x$RETVAL" != x0 ; then
593            FC_NAMEMANGLE=$default_nm
594            cat <<EOF>> genmake_warnings
595    
596    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
597    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
598    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
599    EOF
600            return 1
601        fi
602        f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
603        RETVAL=$?
604        if test "x$RETVAL" != x0 ; then
605            FC_NAMEMANGLE=$default_nm
606            cat <<EOF>> genmake_warnings
607    
608    WARNING: The "nm" command failed.
609    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
610    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
611    EOF
612            return 1
613        fi
614    
615        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
616        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
617        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
618        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
619    
620        nmangle="X"
621        if test "x$c_a" != "x$f_a" ; then
622            comm="echo x$f_a | sed -e 's|x$c_a||'"
623            a=`eval $comm`
624            nmangle="$a ## $nmangle"
625        fi
626        if test "x$c_b" != "x$f_b" ; then
627            comm="echo x$f_b | sed -e 's|x$c_b||'"
628            b=`eval $comm`
629            nmangle="$nmangle ## $b"
630        fi
631    
632        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
633    
634        #  cleanup the testing files
635        rm -f genmake_tcomp.* genmake_test.*
636    }
637    
638    
639    check_HAVE_CLOC()  {
640        get_fortran_c_namemangling
641        cat <<EOF > genmake_tc_1.c
642    $FC_NAMEMANGLE
643    #include <stdio.h>
644    #include <stdlib.h>
645    #include <unistd.h>
646    #include <assert.h>
647    #include <sys/time.h>
648    void FC_NAMEMANGLE(cloc) ( double *curtim )
649    {
650     struct timeval tv1;
651     gettimeofday(&tv1 , (void *)NULL );
652     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
653     *curtim = *curtim/1.E6;
654    }
655    EOF
656        make genmake_tc_1.o >> genmake_tc.log 2>&1
657        RET_C=$?
658        cat <<EOF > genmake_tc_2.f
659          program hello
660          Real*8 wtime
661          external cloc
662          call cloc(wtime)
663          print *," HELLO WORLD", wtime
664          end program hello
665    EOF
666        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
667        RET_F=$?
668        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
669        RETVAL=$?
670        if test "x$RETVAL" = x0 ; then
671            HAVE_CLOC=t
672            DEFINES="$DEFINES -DHAVE_CLOC"
673        fi
674        rm -f genmake_tc*
675    }
676    
677    
678    check_netcdf_libs()  {
679        echo "" > genmake_tnc.log
680        cat <<EOF > genmake_tnc.for
681          program fgennc
682    #include "netcdf.inc"
683          integer iret, ncid, xid
684          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
685          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
686          iret = nf_def_dim(ncid, 'X', 11, xid)
687          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
688          iret = nf_close(ncid)
689          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
690          end
691    EOF
692        #echo "$CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f"
693        #echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.f"
694        #echo "$LINK -o genmake_tnc.o $LIBS"
695        $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \
696            &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.f >> genmake_tnc.log 2>&1  \
697            &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
698        RET_COMPILE=$?
699    
700        #EH3  Remove test program execution for machines that either disallow
701        #EH3  execution or cannot support it (eg. cross-compilers)
702        #EH3
703        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
704        #EH3 RETVAL=$?
705        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
706    
707        if test "x$RET_COMPILE" = x0 ; then
708            HAVE_NETCDF=t
709        else
710            # try again with "-lnetcdf" added to the libs
711            $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \
712                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.f >> genmake_tnc.log 2>&1  \
713                &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
714            RET_COMPILE=$?
715            if test "x$RET_COMPILE" = x0 ; then
716                LIBS="$LIBS -lnetcdf"
717                HAVE_NETCDF=t
718            else
719                cat genmake_tnc.log >> genmake_warnings
720            fi
721        fi
722        rm -f genmake_tnc*
723    }
724    
725    
726    
727    ###############################################################################
728    #   Sequential part of script starts here
729    ###############################################################################
730    
731  #  Set defaults here  #  Set defaults here
732  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 287  LN= Line 736  LN=
736  S64=  S64=
737  KPP=  KPP=
738  FC=  FC=
739    #CC=gcc
740    CPP=
741  LINK=  LINK=
742  DEFINES="-DWORDLENGTH=4"  DEFINES=
743  PACKAGES=  PACKAGES=
744  ENABLE=  ENABLE=
745  DISABLE=  DISABLE=
746  MAKEFILE=  MAKEFILE=
747  MAKEDEPEND=  #MAKEDEPEND=
748  PDEPEND=  PDEPEND=
749  DUMPSTATE=t  DUMPSTATE=t
750  PDEFAULT=  PDEFAULT=
# Line 304  FOPTIM= Line 755  FOPTIM=
755  CFLAGS=  CFLAGS=
756  KFLAGS1=  KFLAGS1=
757  KFLAGS2=  KFLAGS2=
758    #LDADD=
759  LIBS=  LIBS=
760  KPPFILES=  KPPFILES=
761  NOOPTFILES=  NOOPTFILES=
762  NOOPTFLAGS=  NOOPTFLAGS=
763    MPI=
764    MPIPATH=
765    
766    # DEFINES checked by test compilation
767    HAVE_SYSTEM=
768    HAVE_FDATE=
769    FC_NAMEMANGLE=
770    HAVE_CLOC=
771    HAVE_NETCDF=
772    HAVE_ETIME=
773    
774  MODS=  MODS=
775  TOOLSDIR=  TOOLSDIR=
776  SOURCEDIRS=  SOURCEDIRS=
777  INCLUDEDIRS=  INCLUDEDIRS=
778    STANDARDDIRS="USE_THE_DEFAULT"
779    
780    G2ARGS=
781    BASH=
782  PWD=`pwd`  PWD=`pwd`
783  MAKE=make  MAKE=make
784  THISHOSTNAME=`hostname`  AWK=awk
785    THISHOST=`hostname`
786  THISCWD=`pwd`  THISCWD=`pwd`
787  THISDATE=`date`  THISDATE=`date`
788    THISUSER=`echo $USER`
789    THISVER=
790  MACHINE=`uname -a`  MACHINE=`uname -a`
791  EXECUTABLE=  EXECUTABLE=
792  EXEHOOK=  EXEHOOK=
793  EXEDIR=  EXEDIR=
794    PACKAGES_CONF=
795    IEEE=
796    if test "x$MITGCM_IEEE" != x ; then
797        IEEE=$MITGCM_IEEE
798    fi
799    FS=
800    FS90=
801    
802    AUTODIFF_PKG_USED=f
803    AD_OPTFILE=
804    TAF=
805    AD_TAF_FLAGS=
806    FTL_TAF_FLAGS=
807    SVD_TAF_FLAGS=
808    TAF_EXTRA=
809    TAMC=
810    AD_TAMC_FLAGS=
811    FTL_TAF_FLAGS=
812    SVD_TAMC_FLAGS=
813    TAMC_EXTRA=
814    
815    
816  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
817  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
818  gm_s2="FC IEEE MPI JAM DUMPSTATE"  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"
819    
820  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
821  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
822  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
823  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
824  gm_s6="EXECUTABLE EXEHOOK EXEDIR"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
825    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
826    
827  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6"  #  The following are all related to adjoint/tangent-linear stuff
828    gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
829    gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
830    gm_s12="TAF_EXTRA TAMC_EXTRA"
831    
832    gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
833    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
834    
835    cat <<EOF
836    
837    GENMAKE :
838    
839    A program for GENerating MAKEfiles for the MITgcm project.  For a
840    quick list of options, use "genmake -h" or for more detail see:
841    
842      http://mitgcm.org/devel_HOWTO/
843    
844    EOF
845    
 echo  
846  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
847  gm_local="./gm_local"  gm_local="genmake_local"
848  echo -n "  getting local config information:  "  for i in . $MODS ; do
849  if test -e $gm_local ; then      if test -r $i/$gm_local ; then
850            . $i/$gm_local
851            break
852        fi
853    done
854    printf "  getting local config information:  "
855    if test -f $gm_local ; then
856      echo "using $gm_local"      echo "using $gm_local"
857      source $gm_local      . $gm_local
858      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
859      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
860  else  else
# Line 361  fi Line 872  fi
872  #   n=$(( $n + 1 ))  #   n=$(( $n + 1 ))
873  #done  #done
874  #parse_options  #parse_options
   
875  ac_prev=  ac_prev=
876  for ac_option ; do  for ac_option in $@ ; do
877    
878        G2ARGS="$G2ARGS \"$ac_option\""
879    
880      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
881      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 386  for ac_option ; do Line 898  for ac_option ; do
898          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
899              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
900                    
901            -adoptfile | --adoptfile | -adof | --adof)
902                ac_prev=AD_OPTFILE ;;
903            -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
904                AD_OPTFILE=$ac_optarg ;;
905            
906          -pdepend | --pdepend)          -pdepend | --pdepend)
907              ac_prev=PDEPEND ;;              ac_prev=PDEPEND ;;
908          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
# Line 401  for ac_option ; do Line 918  for ac_option ; do
918          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
919              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
920                    
921            -bash | --bash)
922                ac_prev=BASH ;;
923            -bash=* | --bash=*)
924                BASH=$ac_optarg ;;
925            
926            -makedepend | --makedepend | -md | --md)
927                ac_prev=MAKEDEPEND ;;
928            -makedepend=* | --makedepend=* | -md=* | --md=*)
929                MAKEDEPEND=$ac_optarg ;;
930            
931          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
932              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
933          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
934              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
935                    
936          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
937              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
938          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
939              PLATFORM=$ac_optarg ;;              echo
940                usage
941                ;;
942                    
943          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
944              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 431  for ac_option ; do Line 960  for ac_option ; do
960          -enable=* | --enable=*)          -enable=* | --enable=*)
961              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
962                    
963          -noopt | --noopt)          -standarddirs | --standarddirs)
964              ac_prev=NOOPT ;;              ac_prev=STANDARDDIRS ;;
965          -noopt=* | --noopt=*)          -standarddirs=* | --standarddirs=*)
966              NOOPT=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
967            
968  #           -cpp | --cpp)  #           -cpp | --cpp)
969  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
970  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
971  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
972                        
973            -cc | --cc)
974                ac_prev=CC ;;
975            -cc=* | --cc=*)
976                CC=$ac_optarg ;;
977            
978          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
979              ac_prev=FC ;;              ac_prev=FC ;;
980          -fc=* | --fc=*)          -fc=* | --fc=*)
981              FC=$ac_optarg ;;              FC=$ac_optarg ;;
982                    
983            -fs | --fs)
984                ac_prev=FS ;;
985            -fs=* | --fs=*)
986                FS=$ac_optarg ;;
987            
988            -fs90 | --fs90)
989                ac_prev=FS90 ;;
990            -fs90=* | --fs90=*)
991                FS90=$ac_optarg ;;
992            
993          -ieee | --ieee)          -ieee | --ieee)
994              IEEE=1 ;;              IEEE=true ;;
995          -noieee | --noieee)          -noieee | --noieee)
996              IEEE=0 ;;              IEEE= ;;
997            
998          -mpi | --mpi)          -mpi | --mpi)
999              MPI=1 ;;              MPI=true ;;
1000          -nompi | --nompi)          -mpi=* | --mpi=*)
1001              MPI=0 ;;              MPIPATH=$ac_optarg
1002                        MPI=true ;;
1003          -jam | --jam)          
1004              JAM=1 ;;  #       -jam | --jam)
1005          -nojam | --nojam)  #           JAM=1 ;;
1006              JAM=0 ;;  #       -nojam | --nojam)
1007    #           JAM=0 ;;
1008                    
1009          -ds | --ds)          -ds | --ds)
1010              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1011                    
1012            -taf_extra | --taf_extra)
1013                ac_prev=TAF_EXTRA ;;
1014            -taf_extra=* | --taf_extra=*)
1015                TAF_EXTRA=$ac_optarg ;;
1016    
1017            -tamc_extra | --tamc_extra)
1018                ac_prev=TAMC_EXTRA ;;
1019            -tamc_extra=* | --tamc_extra=*)
1020                TAMC_EXTRA=$ac_optarg ;;
1021    
1022          -*)          -*)
1023              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1024              usage              usage
# Line 478  for ac_option ; do Line 1033  for ac_option ; do
1033            
1034  done  done
1035    
1036    if test -f ./.genmakerc ; then
1037        echo
1038        echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1039        echo "  file.  This file format is no longer supported.  Please see:"
1040        echo
1041        echo "    http://mitgcm.org/devel_HOWTO/"
1042        echo
1043        echo "  for directions on how to setup and use the new \"genmake2\" input"
1044        echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."
1045        echo
1046    fi
1047    
1048    #  Find the MITgcm ${ROOTDIR}
1049  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1050      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`
1051        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then
1052          ROOTDIR=".."          ROOTDIR=".."
1053      else      else
1054          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1055              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1056                  ROOTDIR=$d                  ROOTDIR=$d
1057                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1058                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1059                  break                  break
1060              fi              fi
# Line 503  if test ! -d ${ROOTDIR} ; then Line 1072  if test ! -d ${ROOTDIR} ; then
1072      exit 1      exit 1
1073  fi  fi
1074    
1075    #  Find the MITgcm ${THISVER}
1076    if test -f "${ROOTDIR}/doc/tag-index" ; then
1077        THISVER=`grep checkpoint ${ROOTDIR}/doc/tag-index | head -1`
1078    fi
1079    
1080  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1081  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1082      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 516  fi Line 1090  fi
1090  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
1091      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1092          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
1093          source "$OPTFILE"          . "$OPTFILE"
1094          RETVAL=$?          RETVAL=$?
1095          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1096              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1097              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1098              exit 1              exit 1
1099          fi          fi
1100          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" != xf ; then
1101              cp -f $OPTFILE "gm_optfile"              cp -f $OPTFILE "genmake_optfile"
1102          fi          fi
1103      else      else
1104          echo "Error: can't read OPTFILE=\"$OPTFILE\""          echo "Error: can't read OPTFILE=\"$OPTFILE\""
# Line 532  if test "x$OPTFILE" != xNONE ; then Line 1106  if test "x$OPTFILE" != xNONE ; then
1106      fi      fi
1107  fi  fi
1108    
1109  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  #  Check for broken systems that cannot correctly distinguish *.F and *.f files
1110  #  and abort!  # check_for_broken_Ff
1111    
1112    echo "  getting AD_OPTFILE information:  "
1113    if test "x${AD_OPTFILE}" = x ; then
1114        if test "x$MITGCM_AD_OF" = x ; then
1115            AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1116        else
1117            AD_OPTFILE=$MITGCM_AD_OF
1118        fi
1119    fi
1120    if test "x${AD_OPTFILE}" != xNONE ; then
1121        if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1122            echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1123            . "$AD_OPTFILE"
1124            RETVAL=$?
1125            if test "x$RETVAL" != x0 ; then
1126                printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1127                echo "--please check that variable syntax is bash-compatible"
1128                exit 1
1129            fi
1130            if test "x$DUMPSTATE" != xf ; then
1131                cp -f $AD_OPTFILE "genmake_ad_optfile"
1132            fi
1133        else
1134            echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
1135            exit 1
1136        fi
1137    fi
1138    
1139    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1140    #  either set defaults or complain and abort!
1141    if test ! "x$BASH" = x ; then
1142        # add a trailing space so that it works within the Makefile syntax (see below)
1143        BASH="$BASH "
1144    fi
1145  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1146      cat <<EOF 1>&2      cat <<EOF 1>&2
1147    
1148  Error: no Fortran compiler: please specify using one of the following:  Error: no Fortran compiler: please specify using one of the following:
1149    1) within the options file ("FC=...") as specified by "-of=OPTFILE"    1) within the options file ("FC=...") as specified by "-of=OPTFILE"
1150    2) the "-fc=XXX" command-line option    2) the "-fc=XXX" command-line option
1151    3) the "./gm_local" file    3) the "./genmake_local" file
1152  EOF  EOF
1153      exit 1      exit 1
1154  fi  fi
1155    if test "x$CC" = x ; then
1156        CC=cc
1157    #     cat <<EOF 1>&2
1158    # Error: no C compiler: please specify using one of the following:
1159    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1160    #   2) the "-cc=XXX" command-line option
1161    #   3) the "./genmake_local" file
1162    # EOF
1163    #     exit 1
1164    fi
1165  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1166      LINK=$FC      LINK=$FC
1167  fi  fi
1168    if test "x$MAKE" = x ; then
1169        MAKE="make"
1170    fi
1171  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1172      CPP="cpp"      CPP=cpp
1173  fi  fi
1174  echo "#define A a" | cpp > test_cpp 2>&1  #EH3 === UGLY ===
1175    #  The following is an ugly little hack to check for $CPP in /lib/ and
1176    #  it should eventually be replaced with a more general function that
1177    #  searches a combo of the user's path and a list of "usual suspects"
1178    #  to find the correct location for binaries such as $CPP.
1179    for i in " " "/lib/" ; do
1180        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1181    done
1182    #EH3 === UGLY ===
1183    echo "#define A a" | $CPP > test_cpp 2>&1
1184  RETVAL=$?  RETVAL=$?
1185  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1186      cat <<EOF 1>&2      cat <<EOF 1>&2
# Line 558  if test "x$RETVAL" != x0 ; then Line 1188  if test "x$RETVAL" != x0 ; then
1188  Error: C pre-processor "$CPP" failed the test case: please specify using:  Error: C pre-processor "$CPP" failed the test case: please specify using:
1189    
1190    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1191    2) the "./gm_local" file    2) the "./genmake_local" file
1192      3) with the CPP environment variable
1193    
1194  EOF  EOF
1195      exit 1      exit 1
1196  else  else
1197      rm -f test_cpp      rm -f test_cpp
1198  fi  fi
1199  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
1200      MAKEDEPEND=makedepend  if test "x$LN" = x ; then
1201        LN="ln -s"
1202    fi
1203    echo "test" > genmake_test_ln
1204    $LN genmake_test_ln genmake_tlink
1205    RETVAL=$?
1206    if test "x$RETVAL" != x0 ; then
1207        cat <<EOF 1>&2
1208    
1209    Error: The command "ln -s" failed -- please specify a working soft-link
1210      command in the optfile.
1211    
1212    EOF
1213        exit 1
1214  fi  fi
1215    rm -f genmake_test_ln genmake_tlink
1216    
1217    #  Check for broken *.F/*.f handling and fix if possible
1218    check_for_broken_Ff
1219    
1220    if test ! "x$MPI" = x ; then
1221          echo "  Turning on MPI cpp macros"
1222          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1223    fi
1224    
1225    printf "\n===  Checking system libraries  ===\n"
1226    printf "  Do we have the system() command using $FC...  "
1227    cat > genmake_tcomp.f <<EOF
1228          program hello
1229          call system('echo hi')
1230          end
1231    EOF
1232    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
1233    RETVAL=$?
1234    if test "x$RETVAL" = x0 ; then
1235        HAVE_SYSTEM=t
1236        DEFINES="$DEFINES -DHAVE_SYSTEM"
1237        echo "yes"
1238    else
1239        HAVE_SYSTEM=
1240        echo "no"
1241    fi
1242    rm -f genmake_tcomp*
1243    
1244    printf "  Do we have the fdate() command using $FC...  "
1245    cat > genmake_tcomp.f <<EOF
1246          program hello
1247          CHARACTER(128) string
1248          string = ' '
1249          call fdate( string )
1250          print *, string
1251          end
1252    EOF
1253    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
1254    RETVAL=$?
1255    if test "x$RETVAL" = x0 ; then
1256        HAVE_FDATE=t
1257        DEFINES="$DEFINES -DHAVE_FDATE"
1258        echo "yes"
1259    else
1260        HAVE_FDATE=
1261        echo "no"
1262    fi
1263    rm -f genmake_tcomp*
1264    
1265    printf "  Do we have the etime() command using $FC...  "
1266    cat > genmake_tcomp.f <<EOF
1267          program hello
1268          REAL*4 ACTUAL, TARRAY(2)
1269          EXTERNAL ETIME
1270          REAL*4 ETIME
1271          actual = etime( tarray )
1272          print *, tarray
1273          end
1274    EOF
1275    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
1276    RETVAL=$?
1277    if test "x$RETVAL" = x0 ; then
1278        HAVE_ETIME=t
1279        DEFINES="$DEFINES -DHAVE_ETIME"
1280        echo "yes"
1281    else
1282        HAVE_ETIME=
1283        echo "no"
1284    fi
1285    rm -f genmake_tcomp*
1286    
1287    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1288    check_HAVE_CLOC
1289    if test "x$HAVE_CLOC" != x ; then
1290        echo "yes"
1291    else
1292        echo "no"
1293    fi
1294    rm -f genmake_t*
1295    
1296    printf "  Can we create NetCDF-enabled binaries...  "
1297    check_netcdf_libs
1298    if test "x$HAVE_NETCDF" != x ; then
1299        echo "yes"
1300    else
1301        echo "no"
1302    fi
1303    
1304    
1305  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1306  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1307  for d in $MODS ; do  for d in $MODS ; do
1308      if test ! -d $d ; then      if test ! -d $d ; then
1309          echo          echo
1310          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1311          exit 1          exit 1
1312      else      else
1313          echo -n " $d"          printf " $d"
1314          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1315          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1316      fi      fi
# Line 592  if test "x${PLATFORM}" = x ; then Line 1325  if test "x${PLATFORM}" = x ; then
1325  fi  fi
1326    
1327  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1328      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`
1329        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1330          EXEDIR=../exe          EXEDIR=../exe
1331      else      else
1332          EXEDIR=.          EXEDIR=.
# Line 607  if test "x${TOOLSDIR}" = x ; then Line 1341  if test "x${TOOLSDIR}" = x ; then
1341      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1342  fi  fi
1343  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1344      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1345      exit 1      exit 1
1346  fi  fi
1347  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1348      S64='$(TOOLSDIR)/set64bitConst.sh'      S64='$(TOOLSDIR)/set64bitConst.sh'
1349  fi  fi
1350    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1351    
1352  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1353    
# Line 621  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 1356  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1356  #  they appear as regular source code  #  they appear as regular source code
1357  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1358      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1359      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
1360      RETVAL=$?      RETVAL=$?
1361      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1362          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1363      else      else
1364          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1365          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1366          exit 1          exit 1
1367      fi      fi
1368  fi  fi
1369    
1370    #same for exch2
1371    if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then
1372        echo "  Making source files in exch2 from  templates"
1373        ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1
1374        RETVAL=$?
1375        if test "x${RETVAL}" = x0 ; then
1376            rm -f make_exch2.errors
1377        else
1378            echo "Error: problem encountered while building source files in exch2:"
1379            cat make_exch2.errors 1>&2
1380            exit 1
1381        fi
1382    fi
1383    
1384  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1385  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1386      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 651  echo "  getting package dependency info Line 1400  echo "  getting package dependency info
1400  #  Strip the comments and then convert the dependency file into  #  Strip the comments and then convert the dependency file into
1401  #  two arrays: PNAME, DNAME  #  two arrays: PNAME, DNAME
1402  cat $PDEPEND | sed -e 's/#.*$//g' \  cat $PDEPEND | sed -e 's/#.*$//g' \
1403      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
1404      > ./.pd_tmp      > ./.pd_tmp
1405  RETVAL=$?  RETVAL=$?
1406  if test ! "x${RETVAL}" = x0 ; then  if test ! "x${RETVAL}" = x0 ; then
1407      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
1408      exit 1      exit 1
1409  fi  fi
1410  source ./.pd_tmp  . ./.pd_tmp
1411  rm -f ./.pd_tmp  rm -f ./.pd_tmp
1412    
1413  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1414  #  file should eventually be added so that, for convenience, one can  #  file should eventually be added so that, for convenience, one can
1415  #  specify groups of packages using names like "ocean" and "atmosphere".  #  specify groups of packages using names like "ocean" and "atmosphere".
1416  echo  -n "  checking default package list:  "  echo "  checking default package list:  "
1417  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1418      for i in "." $MODS ; do      for i in "." $MODS ; do
1419          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
# Line 677  if test "x${PDEFAULT}" = x ; then Line 1426  if test "x${PDEFAULT}" = x ; then
1426      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1427  fi  fi
1428  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1429      echo "default packages file disabled"      echo "    default packages file disabled"
1430  else  else
1431      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1432          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1433      else      else
1434          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1435          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1436          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1437          RETVAL=$?          RETVAL=$?
1438          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1439              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1440              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1441              exit 1              exit 1
1442          fi          fi
# Line 696  else Line 1444  else
1444              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1445          done          done
1446          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1447          expand_pkg_groups          RET=1
1448            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1449          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1450      fi      fi
1451  fi  fi
1452    
1453  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1454    for i in $PACKAGES ; do
1455        echo $i >> ./.tmp_pack
1456    done
1457    for i in `grep  "-" ./.tmp_pack` ; do
1458        j=`echo $i | sed 's/[-]//'`
1459        DISABLE="$DISABLE $j"
1460    done
1461  pack=  pack=
1462  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1463      addit="t"      addit="t"
# Line 718  PACKAGES="$pack" Line 1474  PACKAGES="$pack"
1474  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1475  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1476  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1477    # Test if each explicitly referenced package exists
1478  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1479      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1480        if test ! -d "$ROOTDIR/pkg/$j" ; then
1481          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1482          exit 1          exit 1
1483      fi      fi
1484      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1485  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1486  PACKAGES=  PACKAGES=
1487  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1488      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1489  done  done
1490    rm -f ./.tmp_pack
1491  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1492    
1493  echo "  applying package dependency rules"  echo "  applying package dependency rules"
# Line 797  while test "x$ck" != xtt ; do Line 1554  while test "x$ck" != xtt ; do
1554              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
1555              exit 1              exit 1
1556          fi          fi
1557          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
1558            #i=$(( $i + 1 ))
1559      done      done
1560      ck=$ck"t"      ck=$ck"t"
1561  done  done
# Line 807  for i in $PACKAGES ; do Line 1565  for i in $PACKAGES ; do
1565      if test -d $adr ; then      if test -d $adr ; then
1566          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
1567          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
1568            if test "x$i" = xautodiff ; then
1569                AUTODIFF_PKG_USED=t
1570            fi
1571      else      else
1572          echo "Error: the directory \"$adr\" for package $i doesn't exist"          echo "Error: the directory \"$adr\" for package $i doesn't exist"
1573          exit 1          exit 1
1574      fi      fi
1575  done  done
1576    
1577  #  This is compatible with the old genmake.  The "DISABLE_*" flags  #  Build MNC templates and check for ability to build and use NetCDF
1578  #  need to be replaced by the "ALLOW_*" flags set below.  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1579  #  RETVAL=$?
1580  # echo -n "  Setting package-specific CPP flags:  "  if test "x$RETVAL" = x0 ; then
1581  # pkrm=( mom_fluxform mom_vecinv generic_advdiff )      ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1
1582  # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )      RETVAL=$?
1583  # echo -n "  "      if test "x${RETVAL}" = x0 ; then
1584  # i=0          rm -f make_mnc.errors
1585  # while test $i -lt "${#pkrm[@]}" ; do      else
1586  #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1          echo "Error: problem encountered while building source files in pkg/mnc:"
1587  #     RETVAL=$?          cat make_mnc.errors 1>&2
1588  #     if test "x$RETVAL" = x1 ; then          exit 1
1589  #       DEFINES="$DEFINES ${pkdef[$i]}"      fi
1590  #       echo -n " ${pkdef[$i]}"      if test "x$HAVE_NETCDF" != xt ; then
1591  #     fi          cat <<EOF
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
1592    
1593  # Create a list of #define and #undef to enable/disable packages  *********************************************************************
1594  PACKAGES_DOT_H=PACKAGES_CONFIG.h  WARNING: the "mnc" package was enabled but tests failed to compile
1595  cat <<EOF >$PACKAGES_DOT_H".tmp"    NetCDF applications.  Please check that:
1596  C=== GENMAKE v2 ===  
1597  C  The following defines have been set by GENMAKE, so please do not    1) NetCDF is correctly installed for this compiler and
1598  C  edit anything below these comments.  In general, you should    2) the LIBS variable (within the "optfile") specifies the correct
1599  C  add or remove packages by re-running genmake with different         NetCDF library to link against.
 C  "-enable" and/or "-disable" options.  
1600    
1601  #ifndef PACKAGES_H    Due to this failure, the "mnc" package is now DISABLED.
1602  #define PACKAGES_H  *********************************************************************
1603    
 C  Packages disabled by genmake:  
1604  EOF  EOF
1605            temp=`echo $PACKAGES | sed -e 's/mnc//g'`
1606            PACKAGES=$temp
1607        fi
1608    fi
1609    
1610    # Create a list of #define and #undef to enable/disable packages
1611    PACKAGES_DOT_H=PACKAGES_CONFIG.h
1612  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
1613  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
1614  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
1615  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
1616  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
1617  all_pack=  all_pack=
1618    DISABLED_PACKAGES=
1619  for n in $names ; do  for n in $names ; do
1620      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
1621          has_pack="f"          has_pack="f"
# Line 862  for n in $names ; do Line 1626  for n in $names ; do
1626              fi              fi
1627          done          done
1628          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1629              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1630              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
 #           DEFINES="$DEFINES -U$undef"  
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
1631          fi          fi
1632      fi      fi
1633  done  done
1634  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
1635  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1636      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1637      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
1638  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
1639    
1640  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1641      case $i in      case $i in
1642          aim_v23)          aim_v23)
1643              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
1644              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
1645              ;;              ;;
1646      esac      esac
1647  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1648    
1649  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
1650    
1651  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1652  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1653  STANDARDDIRS=${STANDARDDIRS:-"eesupp model"}  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1654  for d in $STANDARDDIRS ; do      STANDARDDIRS="eesupp model"
1655      adr="$ROOTDIR/$d/src"  fi
1656      if test ! -d $adr ; then  if test "x$STANDARDDIRS" != x ; then
1657          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""      for d in $STANDARDDIRS ; do
1658          echo "  is correct and that you correctly specified the STANDARDDIRS option"          adr="$ROOTDIR/$d/src"
1659          exit 1          if test ! -d $adr ; then
1660      else              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1661          SOURCEDIRS="$SOURCEDIRS $adr"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1662      fi              exit 1
1663      adr="$ROOTDIR/$d/inc"          else
1664      if test ! -d $adr ; then              SOURCEDIRS="$SOURCEDIRS $adr"
1665          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          fi
1666          echo "  is correct and that you correctly specified the STANDARDDIRS option"          adr="$ROOTDIR/$d/inc"
1667          exit 1          if test ! -d $adr ; then
1668      else              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1669          INCLUDEDIRS="$INCLUDEDIRS $adr"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1670      fi              exit 1
1671  done          else
1672                INCLUDEDIRS="$INCLUDEDIRS $adr"
1673            fi
1674        done
1675    fi
1676    
1677  echo " Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
1678  echo " of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
1679  CPP_OPTIONS=  CPP_OPTIONS=
1680    CPP_EEOPTIONS=
1681  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
1682    names=`ls -1 "$ROOTDIR/pkg"`
1683  for i in $spaths ; do  for i in $spaths ; do
1684      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
1685      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
1686          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
1687          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
1688          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
1689            for n in $names ; do
1690                test_for_package_in_cpp_options $CPP_OPTIONS $n
1691            done
1692        fi
1693        try="$i/CPP_EEOPTIONS.h"
1694        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
1695            echo "    found CPP_EEOPTIONS=\"$try\""
1696            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
1697    #**** not yet enabled ****
1698    #        test_for_mpi_in_cpp_eeoptions $try
1699    #**** not yet enabled ****
1700            CPP_EEOPTIONS="$try"
1701      fi      fi
1702  done  done
1703  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
1704      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
1705      exit 1      exit 1
1706  fi  fi
1707  # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
1708  names=`ls -1 "$ROOTDIR/pkg"`  #  Here, we build the list of files to be "run through" the adjoint
1709  for n in $names ; do  #  compiler.
1710      test_for_package_in_cpp_options $CPP_OPTIONS $n  if test -f ./ad_files ; then
1711        rm -f ./ad_files
1712    fi
1713    echo "  Creating the list of files for the adjoint compiler."
1714    for i in $SOURCEDIRS ; do
1715        list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
1716        for j in $list_files ; do
1717            cat $i/$j >> ad_files
1718        done
1719  done  done
1720    
1721    
# Line 971  echo Line 1723  echo
1723  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
1724  echo "  setting INCLUDES"  echo "  setting INCLUDES"
1725  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
1726      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
1727          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
1728      fi      fi
1729  done  done
# Line 983  rm -rf .links.tmp Line 1733  rm -rf .links.tmp
1733  mkdir .links.tmp  mkdir .links.tmp
1734  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
1735  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
1736  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
1737  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
1738  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
1739  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
1740    printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
1741  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1742  for d in $alldirs ; do  for d in $alldirs ; do
1743      deplist=      deplist=
1744      sfiles=`( cd $d; echo *.[h,c,F] )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
1745      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
1746      for sf in $sfiles ; do      for sf in $sfiles ; do
1747          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1748              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1749                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  case $d/$sf in
1750                  touch .links.tmp/$sf                    ./$PACKAGES_DOT_H)
1751                  deplist="$deplist $sf"                          ;;
1752                      ./AD_CONFIG.h)
1753                            ;;
1754                      ./FC_NAMEMANGLE.h)
1755                            ;;
1756                      ./BUILD_INFO.h)
1757                            ;;
1758                      *)
1759                            touch .links.tmp/$sf
1760                            deplist="$deplist $sf"
1761                            ;;
1762                    esac
1763                    extn=`echo $sf | $AWK -F '.' '{print $NF}'`
1764                  case $extn in                  case $extn in
1765                      F)                      F)
1766                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
1767                          echo -n " $sf" >> srclist.inc                          printf " $sf" >> srclist.inc
1768                          ;;                          ;;
1769                      F90)                      F90)
1770                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> f90srclist.inc
1771                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> f90srclist.inc
1772                          ;;                          ;;
1773                      c)                      c)
1774                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.inc
1775                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.inc
1776                          ;;                          ;;
1777                      h)                      h)
1778                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1779                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hlist.inc
1780                            ;;
1781                        flow)
1782                            echo    " \\"  >> ad_flow_files.inc
1783                            printf " $sf" >> ad_flow_files.inc
1784                          ;;                          ;;
1785                  esac                  esac
1786              fi              fi
# Line 1031  echo "" >> srclist.inc Line 1798  echo "" >> srclist.inc
1798  echo "" >> csrclist.inc  echo "" >> csrclist.inc
1799  echo "" >> f90srclist.inc  echo "" >> f90srclist.inc
1800  echo "" >> hlist.inc  echo "" >> hlist.inc
1801    echo "" >> ad_flow_files.inc
1802    
1803  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
1804      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
1805  fi  fi
1806  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1041  echo "#    $MACHINE" >> $MAKEFILE Line 1809  echo "#    $MACHINE" >> $MAKEFILE
1809  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
1810  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
1811  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
1812  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
1813  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1814  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
1815    
1816    EXE_AD=$EXECUTABLE"_ad"
1817    EXE_FTL=$EXECUTABLE"_ftl"
1818    EXE_SVD=$EXECUTABLE"_svd"
1819    
1820  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1821    #
1822    # OPTFILE="$OPTFILE"
1823  #  #
1824  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
1825  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 1072  EXEDIR      = ${EXEDIR} Line 1847  EXEDIR      = ${EXEDIR}
1847  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
1848  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
1849    
1850    #eh3  new defines for the adjoint work
1851    AUTODIFF    = ${ROOTDIR}/pkg/autodiff
1852    EXE_AD      = ${EXE_AD}
1853    EXE_FTL     = ${EXE_FTL}
1854    EXE_SVD     = ${EXE_SVD}
1855    
1856    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1857    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1858    
1859    # These files are created by Makefile
1860    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
1861    
1862  EOF  EOF
1863    
1864  #  Note: figure out some way to add Hyades JAM libraries here  #  Note: figure out some way to add Hyades JAM libraries here
# Line 1089  KPP = ${KPP} Line 1876  KPP = ${KPP}
1876  FC = ${FC}  FC = ${FC}
1877  # Fortran compiler  # Fortran compiler
1878  F90C = ${F90C}  F90C = ${F90C}
1879    # C compiler
1880    CC = ${CC}
1881  # Link editor  # Link editor
1882  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
1883    
1884  # Defines for CPP  # Defines for CPP
1885  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1117  MAKEFILE=${MAKEFILE} Line 1906  MAKEFILE=${MAKEFILE}
1906    
1907  EOF  EOF
1908    
1909  cat srclist.inc    >> $MAKEFILE  cat srclist.inc       >> $MAKEFILE
1910  cat csrclist.inc   >> $MAKEFILE  cat csrclist.inc      >> $MAKEFILE
1911  cat f90srclist.inc >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
1912  cat hlist.inc      >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
1913  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
1914  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo >> $MAKEFILE
1915    echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
1916    echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE
1917  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
1918    echo >> $MAKEFILE
1919    echo '.SUFFIXES:' >> $MAKEFILE
1920    echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE
1921  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
1922    rm -f ad_flow_files.inc
1923    
1924  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1925    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
1926  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1927  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
1928            @echo Creating \$@ ...
1929          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1930  depend:  depend:
1931          @make links          @make links
1932          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1933          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1934            -rm -f makedepend.out
1935    
1936  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
1937    
1938  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
1939    
# Line 1149  output.txt: \$(EXECUTABLE) Line 1942  output.txt: \$(EXECUTABLE)
1942          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1943    
1944  clean:  clean:
1945          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
1946  Clean:  Clean:
1947          @make clean          @make clean
1948          @make cleanlinks          @make cleanlinks
1949          -rm -f Makefile.bak gm_state gm_optfile make.log          -rm -f \$(SPECIAL_FILES)
1950            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
1951  CLEAN:  CLEAN:
1952          @make Clean          @make Clean
1953          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
1954          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
1955          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
1956          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) output.txt STD*
1957    
1958    #eh3 Makefile: makefile
1959  makefile:  makefile:
1960          ${0} $@          $THIS_SCRIPT $G2ARGS
1961  cleanlinks:  cleanlinks:
1962          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1963    
1964  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are create by make
1965  .F.f:  ${PACKAGES_DOT_H}:
1966            @echo Creating \$@ ...
1967            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
1968    AD_CONFIG.h:
1969            @echo Creating \$@ ...
1970            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1971    FC_NAMEMANGLE.h:
1972            @echo Creating \$@ ...
1973            echo "$FC_NAMEMANGLE" > \$@
1974    
1975    BUILD_INFO.h:
1976            @echo Creating \$@ ...
1977    EOF
1978    
1979    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
1980    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
1981    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
1982    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
1983    
1984    cat >>$MAKEFILE <<EOF
1985    
1986    # The normal chain of rules is (  .F - .$FS - .o  )
1987    
1988    %.o : %.F
1989    
1990    .F.$FS:
1991          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1992  .f.o:  .$FS.o:
1993          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
1994  .F90.f90:  .F90.$FS90:
1995          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1996  .f90.o:  .$FS90.o:
1997          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
1998  .c.o:  .c.o:
1999          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) -c \$<
2000    
2001  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2002  .F.p:  .F.p:
2003          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2004  .p.f:  .p.$FS:
2005          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2006    
2007    #=========================================
2008    #===  Automatic Differentiation Rules  ===
2009    
2010    TAMC           = ${TAMC}
2011    TAF            = ${TAF}
2012    
2013    TAF_EXTRA      = ${TAF_EXTRA}
2014    TAMC_EXTRA     = ${TAMC_EXTRA}
2015    
2016    EOF
2017    
2018    ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
2019    ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
2020    ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2021    for i in $ad_vars ; do
2022        name=$i
2023        t1="t2=\$"`echo $i`
2024        eval $t1
2025        printf "%-20s = " $name >> $MAKEFILE
2026        echo $t2 >> $MAKEFILE
2027    done
2028    
2029    echo "  Add the source list for AD code generation"
2030    echo >> $MAKEFILE
2031    printf "AD_FILES = " >> $MAKEFILE
2032    AD_FILES=`cat ad_files`
2033    for i in $AD_FILES ; do
2034        echo    " \\" >> $MAKEFILE
2035        printf " $i" >> $MAKEFILE
2036    done
2037    echo >> $MAKEFILE
2038    rm -f ad_files
2039    
2040    cat >>$MAKEFILE <<EOF
2041    
2042    # ... AD ...
2043    adall: ad_taf
2044    adtaf: ad_taf_output.f
2045    adtamc: ad_tamc_output.f
2046    
2047    ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
2048            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2049            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2050            -rm -f ad_config.template
2051            @make \$(F77FILES)
2052            @make \$(AD_FLOW_FILES)
2053            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
2054    
2055    ad_taf_output.f: ad_input_code.f
2056            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
2057            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
2058    
2059    adtafonly:
2060            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
2061            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
2062    
2063    ad_taf: ad_taf_output.o \$(OBJFILES)
2064            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2065    
2066    ad_tamc_output.f: ad_input_code.f
2067            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
2068            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f
2069    
2070    ad_tamc: ad_tamc_output.o \$(OBJFILES)
2071            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2072    
2073    
2074    # ... FTL ...
2075    ftlall: ftl_taf
2076    ftltaf: ftl_taf_output.f
2077    ftltamc: ftl_tamc_output.f
2078    
2079    ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
2080            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2081            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2082            -rm -f ftl_config.template
2083            @make \$(F77FILES)
2084            @make \$(AD_FLOW_FILES)
2085            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
2086    
2087    ftl_taf_output.f: ftl_input_code.f
2088            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
2089            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
2090    
2091    ftltafonly:
2092            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
2093            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
2094    
2095    ftl_taf: ftl_taf_output.o \$(OBJFILES)
2096            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2097    
2098    ftl_tamc_output.f: ftl_input_code.f
2099            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
2100            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f
2101    
2102    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2103            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2104    
2105    
2106    # ... SVD ...
2107    svdtaf: ad_taf_output.f ftl_taf_output.f
2108    svdall: svd_taf
2109    
2110    svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)
2111            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2112    
2113    
2114    #=========================================
2115    
2116  EOF  EOF
2117    
2118  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
# Line 1197  for i in $KPPFILES ; do Line 2126  for i in $KPPFILES ; do
2126      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2127          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2128      fi      fi
2129      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
2130  done  done
2131    
2132  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1207  for i in $NOOPTFILES ; do Line 2136  for i in $NOOPTFILES ; do
2136      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2137          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2138      fi      fi
2139      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
2140      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
2141  done  done
2142    
# Line 1220  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 2149  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
2149    
2150  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
2151    
2152    # Create special header files
2153    $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
2154    if test ! -f $PACKAGES_DOT_H ; then
2155        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2156    else
2157        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
2158        RETVAL=$?
2159        if test "x$RETVAL" = x0 ; then
2160            rm -f $PACKAGES_DOT_H".tmp"
2161        else
2162            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
2163            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2164        fi
2165    fi
2166    if test ! -f AD_CONFIG.h ; then
2167        $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
2168    fi
2169    
2170    
2171  #  Write the "state" for future records  #  Write the "state" for future records
2172  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
2173      echo -n "" > gm_state      printf "" > genmake_state
2174      for i in $gm_state ; do      for i in $gm_state ; do
2175          t1="t2=\$$i"          t1="t2=\$$i"
2176          eval $t1          eval $t1
2177          echo "$i='$t2'" >> gm_state          echo "$i='$t2'" >> genmake_state
2178      done      done
2179  fi  fi

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