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revision 1.11.2.6 by edhill, Thu Oct 2 14:42:04 2003 UTC revision 1.174 by cnh, Thu Nov 6 03:55:50 2008 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24      if test "x${RETVAL}" = x0 ; then  }
25          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"  
26          exit 99  # Search for particular CPP #cmds associated with MPI
27      fi  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1  test_for_mpi_in_cpp_eeoptions() {
29        cpp_options=$1
30        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38    }
39    
40    # Search for particular string in a file. Return 1 if detected, 0 if not
41    # usage: test_for_string_in_file file string
42    test_for_string_in_file() {
43        file=$1
44        strng=$2
45        grep -i "$strng" $file > /dev/null 2>&1
46      RETVAL=$?      RETVAL=$?
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
49            grep -i "$strng" $file
50          exit 99          exit 99
51      fi      fi
52      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
53  }  }
54    
55  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
# Line 46  expand_pkg_groups() { Line 59  expand_pkg_groups() {
59      PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"      PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"
60      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
61          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
62          cat ./p1.tmp | awk '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
63          matched=0          matched=0
64          for i in $PACKAGES ; do          for i in $PACKAGES ; do
65              line=`grep $i ./p2.tmp`              line=`grep "^ *$i" ./p2.tmp`
66              RETVAL=$?              RETVAL=$?
67              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
68                  matched=1                  matched=1
69                  replace=`echo $line | awk '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
70                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with: $replace"
71                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
72              else              else
# Line 62  expand_pkg_groups() { Line 75  expand_pkg_groups() {
75          done          done
76          PACKAGES=$new_packages          PACKAGES=$new_packages
77          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
78            return $matched
79      else      else
80          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
81      fi      fi
82  }  }
83    
84    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
85    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
86    check_for_broken_Ff()  {
87        #  Do we have defaults for $FS and/or $FS90 ?
88        tfs=f
89        tfs9=f90
90        if test "x$FS" != x ; then
91            tfs="$FS"
92        fi
93        if test "x$FS90" != x ; then
94            tfs9="$FS90"
95        fi
96    
97        #  First check the ability to create a *.F/.f pair.
98        cat <<EOF >> genmake_hello.F
99          program hello
100          write(*,*) 'hi'
101          stop
102          end
103    EOF
104        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
105        RETVAL=$?
106        if test "x$RETVAL" != x0 ; then
107            if test "x$FS" = x ; then
108                FS='for'
109                FS90='fr9'
110                check_for_broken_Ff
111            else
112                cat <<EOF 2>&1
113    ERROR: Your file system cannot distinguish between *.F and *.f files
114      (fails the "cp" test) and this program cannot find a suitable
115      replacement extension.  Please try a different build environment or
116      contact the <MITgcm-support@mitgcm.org> list for help.
117    
118    EOF
119                exit -1
120            fi
121            return
122        fi
123        rm -f genmake_hello.*
124    
125        #  Check the ability of ${MAKE} and ${LN} to use the current set
126        #  of extensions.
127        cat <<EOF >> genmake_hello.F
128          program hello
129          write(*,*) 'hi'
130          stop
131          end
132    EOF
133        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
134        cat <<EOF >> $MAKEFILE
135    .SUFFIXES:
136    .SUFFIXES: .$tfs .F
137    .F.$tfs:
138            $LN \$< \$@
139    EOF
140        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
141        RETVAL=$?
142        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
143            if test "x$FS" = x ; then
144                FS='for'
145                FS90='fr9'
146                check_for_broken_Ff
147            else
148                cat <<EOF 2>&1
149    ERROR: Your file system cannot distinguish between *.F and *.f files
150      (fails the "make/ln" test) and this program cannot find a suitable
151      replacement extension.  Please try a different build environment or
152      contact the <MITgcm-support@mitgcm.org> list for help.
153    
154    EOF
155                exit -1
156                return
157            fi
158        fi
159        rm -f genmake_hello.* $MAKEFILE
160        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
161    
162        #  If we make it here, use the extensions
163        FS=$tfs
164        FS90=$tfs9
165        return
166    }
167    
168    
169    look_for_makedepend()  {
170    
171        #  The "original" makedepend is part of the Imake system that is
172        #  most often distributed with XFree86 or with an XFree86 source
173        #  package.  As a result, many machines (eg. generic Linux) do not
174        #  have a system-default "makedepend" available.  For those
175        #  systems, we have two fall-back options:
176        #
177        #    1) a makedepend implementation shipped with the cyrus-imapd
178        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
179        #
180        #    2) a known-buggy xmakedpend shell script
181        #
182        #  So the choices are, in order:
183        #
184        #    1) use the user-specified program
185        #    2) use a system-wide default
186        #    3) locally build and use the cyrus implementation
187        #    4) fall back to the buggy local xmakedpend script
188        #
189        if test "x${MAKEDEPEND}" = x ; then
190            which makedepend > /dev/null 2>&1
191            RV0=$?
192            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
193            #  echo 'MAKEFILE="'$MAKEFILE'"'
194            cat <<EOF >> $MAKEFILE
195    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
196    #
197    #   Some "makedepend" implementations will die if they cannot
198    #   find a Makefile -- so this file is here to gives them an
199    #   empty one to find and parse.
200    EOF
201            cat <<EOF >> genmake_tc.f
202          program test
203          write(*,*) 'test'
204          stop
205          end
206    EOF
207            makedepend genmake_tc.f > /dev/null 2>&1
208            RV1=$?
209            test -f $MAKEFILE  &&  rm -f $MAKEFILE
210            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
211            if test "x${RV0}${RV1}" = x00 ; then
212                MAKEDEPEND=makedepend
213            else
214                echo "    a system-default makedepend was not found."
215                
216                #  Try to build the cyrus implementation
217                build_cyrus_makedepend
218                RETVAL=$?
219                if test "x$RETVAL" != x0 ; then
220                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
221                fi
222                rm -f ./genmake_cy_md
223            fi
224        else
225            #  echo "MAKEDEPEND=${MAKEDEPEND}"
226            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
227            RETVAL=$?
228            if test x"$RETVAL" = x0 ; then
229                build_cyrus_makedepend
230            fi
231        fi
232    }
233    
234    
235    build_cyrus_makedepend()  {
236        rm -f ./genmake_cy_md
237        (
238            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
239                &&  ./configure > /dev/null 2>&1  \
240                &&  make > /dev/null 2>&1
241            if test -x ./makedepend.exe ; then
242                $LN ./makedepend.exe ./makedepend
243            fi
244            ./makedepend ifparser.c > /dev/null 2>&1  \
245                &&  echo "true"
246        ) > ./genmake_cy_md
247        grep true ./genmake_cy_md > /dev/null 2>&1
248        RETVAL=$?
249        rm -f ./genmake_cy_md
250        if test "x$RETVAL" = x0 ; then
251            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
252            return 0
253        else
254            echo "WARNING: unable to build cyrus-imapd-makedepend"
255            return 1
256        fi
257    }
258    
259    
260    build_embed_encode()
261    {
262        printf "  building the embed-encode utility...  "
263        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265                echo
266                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267                echo
268                EMBED_SRC=f
269                return 1
270            fi
271            clist="cc gcc c89 $CC"
272            for ic in $clist ; do
273                comm="$ic -o encode_files encode_files.c"
274                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275                RETVAL=$?
276                if test "x$RETVAL" = x0 ; then
277                    echo "OK"
278                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279                    return 0
280                fi
281            done
282            echo
283            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
284            echo "      so it has been disabled"
285            echo
286            EMBED_SRC=f
287            return 1
288        fi
289        echo "OK"
290        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291    }
292    
293    
294  # Guess possible config options for this host  # Guess possible config options for this host
295  find_possible_configs()  {  find_possible_configs()  {
296    
297      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
298      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
299      PLATFORM=`echo $tmp2 | sed -e 's/i[3-6]86/ia32/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
300        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
301        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
302        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
303        PLATFORM=$tmp3
304        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
305      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
306      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
307            
308      echo "test" > test      echo "test" > test
309      ln -s ./test link      ln -s ./test link
# Line 103  find_possible_configs()  { Line 321  find_possible_configs()  {
321          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
322      fi      fi
323    
324      # look for possible fortran compilers      look_for_makedepend
325      tmp="$MITGCM_FC $FC g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"  
326        #================================================================
327        #  look for possible C compilers
328        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329        p_CC=
330        for c in $tmp ; do
331            rm -f ./genmake_hello.c  ./genmake_hello
332            cat >> genmake_hello.c << EOF
333    #include <stdio.h>
334    int main(int argc, char **argv) {
335      printf("Hello!\n");
336      return 0;
337    }
338    EOF
339            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
340            RETVAL=$?
341            if test "x${RETVAL}" = x0 ; then
342                p_CC="$p_CC $c"
343            fi
344        done
345        rm -f ./genmake_hello.c ./genmake_hello
346        if test "x${p_CC}" = x ; then
347            cat 1>&2 <<EOF
348    
349    Error: No C compilers were found in your path.  Please specify one using:
350    
351        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
352        2) the CC or MITGCM_CC environment variables.
353    
354    EOF
355            exit 1
356        else
357            echo "  The possible C compilers found in your path are:"
358            echo "   "$p_CC
359            if test "x$CC" = x ; then
360                CC=`echo $p_CC | $AWK '{print $1}'`
361                echo "  Setting C compiler to: "$CC
362            fi
363        fi
364    
365        #================================================================
366        #  look for possible FORTRAN compilers
367        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 121  EOF Line 381  EOF
381              p_FC="$p_FC $c"              p_FC="$p_FC $c"
382          fi          fi
383      done      done
384        rm -f ./hello.f ./hello
385      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
386          cat 1>&2 <<EOF          cat 1>&2 <<EOF
387    
# Line 128  Error: No Fortran compilers were found i Line 389  Error: No Fortran compilers were found i
389    
390      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
391      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
392      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
393    
394  EOF  EOF
395          exit 1          exit 1
396      else      else
397          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
398          echo "   "$p_FC          echo "   "$p_FC
         if test "x$FC" = x ; then  
             FC=`echo $p_FC | awk '{print $1}'`  
         fi  
399      fi      fi
400    
401      for i in $p_FC ; do      #  Use the first of the compilers found in the current PATH
402          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i      #  that has a correctly-named optfile
403          if test -r $p_OF ; then      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
404              OPTFILE=$p_OF          for i in $p_FC ; do
405              echo "  The options file:  $p_OF"              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
406              echo "    appears to match so we'll use it."              if test -r $OPTFILE ; then
407              break                  echo "  Setting OPTFILE to: "$OPTFILE
408          fi                  break
409      done              fi
410            done
411        fi
412    
413        if test "x$OPTFILE" = x ; then
414            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
415            if test ! -r $OPTFILE ; then
416                 echo "  I looked for the file "$OPTFILE" but did not find it"
417            fi
418        fi
419    #    echo "  The options file:  $p_OF"
420    #    echo "    appears to match so we'll use it."
421    #   for i in $p_FC ; do
422    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
423    #if test -r $p_OF ; then
424    #    OPTFILE=$p_OF
425    #    echo "  The options file:  $p_OF"
426    #    echo "    appears to match so we'll use it."
427    #    break
428    #fi
429    #   done
430      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
431          cat 1>&2 <<EOF          cat 1>&2 <<EOF
432    
# Line 202  get_pdepend_list()  { Line 480  get_pdepend_list()  {
480      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
481      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
482      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
483          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
484          > ./.pd_tmp          > ./.pd_tmp
485      source ./.pd_tmp      . ./.pd_tmp
486      rm -f ./.pd_tmp      rm -f ./.pd_tmp
487    
488      echo -n "PNAME = "${}      printf "PNAME = "${}
489  }  }
490    
491    
492  #  Explain usage  #  Explain usage
493  usage()  {  usage()  {
494      echo  cat <<EOF
495      echo "Usage: "$0" [OPTIONS]"  
496      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
497      echo    where [OPTIONS] can be:
498      echo "    -help | --help | -h | --h"  
499      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
500      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
501      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
502      echo "    -pdepend NAME | --pdepend NAME"      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
503      echo "      -pdepend=NAME | --pdepend=NAME"        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
504      echo "    -pdefault NAME | --pdefault NAME"            Use "NAME" as the adoptfile.  By default, the file at
505      echo "      -pdefault=NAME | --pdefault=NAME"            "tools/adjoint_options/adjoint_default" will be used.
506      echo "    -make NAME | -m NAME"  
507      echo "      --make=NAME | -m=NAME"      -nooptfile | --nooptfile
508      echo "    -makefile NAME | -mf NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
509      echo "      --makefile=NAME | -mf=NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
510      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"            Use "NAME" as the optfile.  By default, an attempt will be
511      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            made to find an appropriate "standard" optfile in the
512      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"            tools/build_options/ directory.
513      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"  
514      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"      -pdepend NAME | --pdepend NAME
515      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"        -pdepend=NAME | --pdepend=NAME
516      echo "    -disable NAME | --disable NAME"            Get package dependency information from "NAME".
517      echo "      -disable=NAME | --disable=NAME"  
518      echo "    -enable NAME | --enable NAME"      -pdefault NAME | --pdefault NAME
519      echo "      -enable=NAME | --enable=NAME"        -pdefault=NAME | --pdefault=NAME
520      echo "    -noopt NAME | --noopt NAME"            Get the default package list from "NAME".
521      echo "      -noopt=NAME | --noopt=NAME"  
522  #    echo "    -cpp NAME | --cpp NAME"      -make NAME | -m NAME
523  #    echo "      -cpp=NAME | --cpp=NAME"        --make=NAME | -m=NAME
524      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"            Use "NAME" for the MAKE program. The default is "make" but
525      echo "      -fc=NAME | --fc=NAME"            many platforms, "gmake" is the preferred choice.
526      echo "    -[no]ieee | --[no]ieee"  
527      echo "    -[no]mpi | --[no]mpi"      -makefile NAME | -mf NAME
528      echo "    -[no]jam | --[no]jam"        --makefile=NAME | -mf=NAME
529      echo            Call the makefile "NAME".  The default is "Makefile".
530      echo "  and NAME is a string such as:"  
531      echo      -makedepend NAME | -md NAME
532      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"        --makedepend=NAME | -md=NAME
533      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"            Use "NAME" for the MAKEDEPEND program.
534      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"  
535      echo      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
536      echo "  which, depending upon your shell, may need to be single-quoted"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
537      echo "  if it contains spaces, dashes, or other special characters."            Specify the location of the MITgcm ROOTDIR as "NAME".
538              By default, genamke will try to find the location by
539              looking in parent directories (up to the 5th parent).
540    
541        -mods NAME | --mods NAME | -mo NAME | --mo NAME
542          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
543              Here, "NAME" specifies a list of directories that are
544              used for additional source code.  Files found in the
545              "mods list" are given preference over files of the same
546              name found elsewhere.
547    
548        -disable NAME | --disable NAME
549          -disable=NAME | --disable=NAME
550              Here "NAME" specifies a list of packages that we don't
551              want to use.  If this violates package dependencies,
552              genamke will exit with an error message.
553    
554        -enable NAME | --enable NAME
555          -enable=NAME | --enable=NAME
556              Here "NAME" specifies a list of packages that we wish
557              to specifically enable.  If this violates package
558              dependencies, genamke will exit with an error message.
559    
560        -standarddirs NAME | --standarddirs NAME
561          -standarddirs=NAME | --standarddirs=NAME
562              Here, "NAME" specifies a list of directories to be
563              used as the "standard" code.
564    
565        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
566          -fc=NAME | --fc=NAME
567              Use "NAME" as the fortran compiler.  By default, genmake
568              will search for a working compiler by trying a list of
569              "usual suspects" such as g77, f77, etc.
570    
571        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
572              Use "NAME" as the C compiler.  By default, genmake
573              will search for a working compiler by trying a list of
574              "usual suspects" such as gcc, c89, cc, etc.
575    
576        -[no]ieee | --[no]ieee
577              Do or don't use IEEE numerics.  Note that this option
578              *only* works if it is supported by the OPTFILE that
579              is being used.
580    
581        -ignoretime | -ignore_time | --ignoretime | --ignore_time
582              Ignore all the "wall clock" routines entirely.  This will
583              not in any way hurt the model results -- it simply means
584              that the code that checks how long the model spends in
585              various routines will give junk values.
586    
587        -ts | --ts
588              Produce timing information per timestep
589        -papis | --papis
590              Produce summary MFlop/s (and IPC) with PAPI per timestep
591        -pcls | --pcls
592              Produce summary MFlop/s etc. with PCL per timestep
593        -foolad | --foolad
594              Fool the AD code generator
595        -papi | --papi
596              Performance analysis with PAPI
597        -pcl | --pcl
598              Performance analysis with PCL
599        -hpmt | --hpmt
600              Performance analysis with the HPM Toolkit
601    
602        -gsl | --gsl
603              Use GSL to control floating point rounding and precision
604        -devel | --devel
605              Add additional warning and debugging flags for development
606    
607        -mpi | --mpi
608              Include MPI header files and link to MPI libraries
609        -mpi=PATH | --mpi=PATH
610              Include MPI header files and link to MPI libraries using MPI_ROOT
611              set to PATH. i.e. Include files from \$PATH/include, link to libraries
612              from \$PATH/lib and use binaries from \$PATH/bin.
613    
614        -es | --es | -embed-source | --embed-source
615              Embed a tarball containing the full source code
616              (including the Makefile, etc.) used to build the
617              executable [off by default]
618    
619        -bash NAME
620              Explicitly specify the Bourne or BASH shell to use
621    
622      While it is most often a single word, the "NAME" variables specified
623      above can in many cases be a space-delimited string such as:
624    
625        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
626        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
627        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
628    
629      which, depending upon your shell, may need to be single-quoted.
630    
631      For more detailed genmake documentation, please see:
632    
633        http://mitgcm.org/devel_HOWTO/
634    
635    EOF
636    
637      exit 1      exit 1
638  }  }
639    
640  #eh3 # This is the generic configuration.  #  Build a CPP macro to automate calling C routines from FORTRAN
641  #eh3 set LN         = ( 'ln -s' )  get_fortran_c_namemangling()  {
642  #eh3 set CPP        = ( '/lib/cpp -P' )  
643  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
644  #eh3 set KPP        = (  )      if test ! "x$FC_NAMEMANGLE" = x ; then
645  #eh3 set FC         = ( 'f77' )          return 0
646  #eh3 set LINK       = $FC      fi
647  #eh3 set MAKEDEPEND = ( 'makedepend' )  
648  #eh3 set INCLUDES   = ( -I. )      default_nm="#define FC_NAMEMANGLE(X) X ## _"
649  #eh3 set FFLAGS     = (  )      
650  #eh3 set FOPTIM     = (  )      cat > genmake_test.c <<EOF
651  #eh3 set CFLAGS     = (  )  void tcall( char * string ) { tsub( string ); }
652  #eh3 set KFLAGS1    = (  )  EOF
653  #eh3 set KFLAGS2    = (  )      $MAKE genmake_test.o >> genmake_warnings 2>&1
654  #eh3 set LIBS       = (  )      RETVAL=$?
655  #eh3 set KPPFILES   = (  )      if test "x$RETVAL" != x0 ; then
656  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )          FC_NAMEMANGLE=$default_nm
657  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )          cat <<EOF>> genmake_errors
658    
659    WARNING: C test compile fails
660    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
661    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
662    EOF
663            return 1
664        fi
665        c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
666        RETVAL=$?
667        if test "x$RETVAL" != x0 ; then
668            FC_NAMEMANGLE=$default_nm
669            cat <<EOF>> genmake_warnings
670    
671    WARNING: The "nm" command failed.
672    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
673    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
674    EOF
675            return 1
676        fi
677        cat > genmake_tcomp.$FS <<EOF
678          subroutine tcall( string )
679          character*(*) string
680          call tsub( string )
681          end
682    EOF
683        $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
684        RETVAL=$?
685        if test "x$RETVAL" != x0 ; then
686            FC_NAMEMANGLE=$default_nm
687            cat <<EOF>> genmake_warnings
688    
689    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
690    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
691    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
692    EOF
693            return 1
694        fi
695        f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
696        RETVAL=$?
697        if test "x$RETVAL" != x0 ; then
698            FC_NAMEMANGLE=$default_nm
699            cat <<EOF>> genmake_warnings
700    
701    WARNING: The "nm" command failed.
702    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
703    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
704    EOF
705            return 1
706        fi
707    
708        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
709        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
710        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
711        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
712    
713        nmangle="X"
714        if test "x$c_a" != "x$f_a" ; then
715            comm="echo x$f_a | sed -e 's|x$c_a||'"
716            a=`eval $comm`
717            nmangle="$a ## $nmangle"
718        fi
719        if test "x$c_b" != "x$f_b" ; then
720            comm="echo x$f_b | sed -e 's|x$c_b||'"
721            b=`eval $comm`
722            nmangle="$nmangle ## $b"
723        fi
724    
725        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
726    
727        #  cleanup the testing files
728        rm -f genmake_tcomp.* genmake_test.*
729    }
730    
731    
732    check_HAVE_CLOC()  {
733        get_fortran_c_namemangling
734        cat <<EOF > genmake_tc_1.c
735    $FC_NAMEMANGLE
736    #include <stdio.h>
737    #include <stdlib.h>
738    #include <unistd.h>
739    #include <assert.h>
740    #include <sys/time.h>
741    void FC_NAMEMANGLE(cloc) ( double *curtim )
742    {
743     struct timeval tv1;
744     gettimeofday(&tv1 , (void *)NULL );
745     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
746     *curtim = *curtim/1.E6;
747    }
748    EOF
749        COMM="$CC $CFLAGS -c genmake_tc_1.c"
750        echo $COMM >> genmake_warnings
751        $COMM >> genmake_warnings 2>&1
752        RET_C=$?
753        cat <<EOF > genmake_tc_2.$FS
754          program hello
755          REAL*8 wtime
756          external cloc
757          call cloc(wtime)
758          print *," HELLO WORLD", wtime
759          end
760    EOF
761        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
762        echo $COMM >> genmake_warnings
763        $COMM >> genmake_warnings 2>&1
764        RET_F=$?
765        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
766        RETVAL=$?
767        if test "x$RETVAL" = x0 ; then
768            HAVE_CLOC=t
769            DEFINES="$DEFINES -DHAVE_CLOC"
770        fi
771        rm -f genmake_tc*
772    }
773    
774    
775    check_HAVE_SIGREG()  {
776        if test ! "x$HAVE_SIGREG" = x ; then
777            return
778        fi
779        get_fortran_c_namemangling
780        cat <<EOF > genmake_tc_1.c
781    $FC_NAMEMANGLE
782    #include <stdlib.h>
783    #include <stdio.h>
784    #include <signal.h>
785    #include <errno.h>
786    #include <ucontext.h>
787    
788    int * ip;
789    
790    static void killhandler(
791        unsigned int sn, siginfo_t  si, struct ucontext *sc )
792    {
793        *ip = *ip + 1;
794        return;
795    }
796    
797    void FC_NAMEMANGLE(sigreg) (int * aip)
798    {
799        struct sigaction s;
800        ip = aip;
801        s.sa_flags = SA_SIGINFO;
802        s.sa_sigaction = (void *)killhandler;
803        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
804            printf("Sigaction returned error = %d\n", errno);
805            exit(0);
806        }
807        return;
808    }
809    EOF
810        COMM="$CC $CFLAGS -c genmake_tc_1.c"
811        echo $COMM >> genmake_warnings
812        $COMM >> genmake_warnings 2>&1
813        RET_C=$?
814        cat <<EOF > genmake_tc_2.$FS
815          program hello
816          integer anint
817          common /iv/ anint
818          external sigreg
819          call sigreg(anint)
820          end
821    EOF
822        echo >> genmake_warnings
823        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
824        cat genmake_tc_2.$FS >> genmake_warnings
825        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
826        echo $COMM >> genmake_warnings
827        $COMM >> genmake_warnings 2>&1
828        RETVAL=$?
829        if test "x$RETVAL" = x0 ; then
830            HAVE_SIGREG=t
831            DEFINES="$DEFINES -DHAVE_SIGREG"
832        fi
833        rm -f genmake_tc*
834    }
835    
836    
837    check_HAVE_SETRLSTK()  {
838        if test "x$HAVE_SETRLSTK" = xt ; then
839            DEFINES="$DEFINES -DHAVE_SETRLSTK"
840            return
841        fi  
842        if test ! "x$HAVE_SETRLSTK" = x ; then
843            return
844        fi
845        get_fortran_c_namemangling
846        cat <<EOF > genmake_tc_1.c
847    $FC_NAMEMANGLE
848    #include <sys/time.h>
849    #include <sys/resource.h>
850    #include <unistd.h>
851    void FC_NAMEMANGLE(setrlstk) ()
852    {
853        struct rlimit rls;
854        rls.rlim_cur = RLIM_INFINITY;
855        rls.rlim_max = RLIM_INFINITY;
856        setrlimit(RLIMIT_STACK, &rls);
857        return;
858    }
859    EOF
860        COMM="$CC $CFLAGS -c genmake_tc_1.c"
861        echo $COMM >> genmake_warnings
862        $COMM >> genmake_warnings 2>&1
863        RET_C=$?
864        cat <<EOF > genmake_tc_2.$FS
865          program hello
866          external setrlstk
867          call setrlstk()
868          end
869    EOF
870        echo >> genmake_warnings
871        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
872        cat genmake_tc_2.$FS >> genmake_warnings
873        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
874        echo $COMM >> genmake_warnings
875        $COMM >> genmake_warnings 2>&1
876        RETVAL=$?
877        if test "x$RETVAL" = x0 ; then
878            HAVE_SETRLSTK=t
879            DEFINES="$DEFINES -DHAVE_SETRLSTK"
880        fi
881        rm -f genmake_tc*
882    }
883    
884    
885    check_HAVE_STAT()  {
886        get_fortran_c_namemangling
887        cat <<EOF > genmake_tc_1.c
888    $FC_NAMEMANGLE
889    #include <stdio.h>
890    #include <stdlib.h>
891    #include <unistd.h>
892    #include <sys/stat.h>
893    #include <sys/types.h>
894    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
895    {
896        char name[512];
897        struct stat astat;
898    
899        name[0] = 'a'; name[1] = '\0';
900        if (! stat(name, &astat))
901            *nbyte = (int)(astat.st_size);
902        else
903            *nbyte = -1;
904    }
905    EOF
906        COMM="$CC $CFLAGS -c genmake_tc_1.c"
907        echo $COMM >> genmake_warnings
908        $COMM >> genmake_tc.log 2>&1
909        RET_C=$?
910        cat <<EOF > genmake_tc_2.$FS
911          program hello
912          integer nbyte
913          call tfsize(nbyte)
914          print *," HELLO WORLD", nbyte
915          end
916    EOF
917        echo >> genmake_warnings
918        echo "running: check_HAVE_STAT()" >> genmake_warnings
919        cat genmake_tc_2.$FS >> genmake_warnings
920        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
921        echo $COMM >> genmake_warnings
922        $COMM >> genmake_tc.log 2>&1
923        RETVAL=$?
924        if test "x$RETVAL" = x0 ; then
925            HAVE_STAT=t
926            DEFINES="$DEFINES -DHAVE_STAT"
927        fi
928        rm -f genmake_tc*
929    }
930    
931    
932    check_netcdf_libs()  {
933        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
934            return
935        fi
936        echo >> genmake_warnings
937        echo "running: check_netcdf_libs()" >> genmake_warnings
938        cat <<EOF > genmake_tnc.F
939          program fgennc
940    #include "netcdf.inc"
941    EOF
942        if test ! "x$MPI" = x ; then
943            echo '#include "mpif.h"' >> genmake_tnc.F
944        fi
945        cat <<EOF >> genmake_tnc.F
946          integer iret, ncid, xid
947          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
948          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
949          iret = nf_def_dim(ncid, 'X', 11, xid)
950          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
951          iret = nf_close(ncid)
952          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
953          end
954    EOF
955        echo "===  genmake_tnc.F  ===" > genmake_tnc.log
956        cat genmake_tnc.F >> genmake_tnc.log
957        echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
958        RET_CPP=f
959        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
960        echo "$COMM" >> genmake_tnc.log
961        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
962        if test "x$RET_CPP" = xf ; then
963            echo "  WARNING: CPP failed to pre-process the netcdf test." \
964                >> genmake_tnc.log
965            echo "    Please check that \$INCLUDES is properly set." \
966                >> genmake_tnc.log
967        fi
968        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
969        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
970        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
971            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
972        RET_COMPILE=$?
973        cat genmake_tnc.log >> genmake_warnings
974    
975        #EH3  Remove test program execution for machines that either disallow
976        #EH3  execution or cannot support it (eg. cross-compilers)
977        #EH3
978        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
979        #EH3 RETVAL=$?
980        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
981    
982        if test "x$RET_COMPILE" = x0 ; then
983            HAVE_NETCDF=t
984        else
985            # try again with "-lnetcdf" added to the libs
986            echo "try again with added '-lnetcdf'" > genmake_tnc.log
987            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
988            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
989            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
990            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
991                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
992                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
993            RET_COMPILE=$?
994            cat genmake_tnc.log >> genmake_warnings
995            if test "x$RET_COMPILE" = x0 ; then
996                LIBS="$LIBS -lnetcdf"
997                HAVE_NETCDF=t
998            else
999            # try again with "-lnetcdff" added to the libs
1000                echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1001                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1002                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1003                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1004                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1005                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1006                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1007                RET_COMPILE=$?
1008                cat genmake_tnc.log >> genmake_warnings
1009                if test "x$RET_COMPILE" = x0 ; then
1010                    LIBS="$LIBS -lnetcdff -lnetcdf"
1011                    HAVE_NETCDF=t
1012                fi
1013            fi
1014        fi
1015        rm -f genmake_tnc*
1016    }
1017    
1018    
1019    
1020    ###############################################################################
1021    #   Sequential part of script starts here
1022    ###############################################################################
1023    
1024  #  Set defaults here  #  Set defaults here
1025  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 286  PLATFORM= Line 1028  PLATFORM=
1028  LN=  LN=
1029  S64=  S64=
1030  KPP=  KPP=
1031  FC=  #FC=
1032    #CC=gcc
1033    #CPP=
1034  LINK=  LINK=
1035  DEFINES="-DWORDLENGTH=4"  DEFINES=
1036  PACKAGES=  PACKAGES=
1037  ENABLE=  ENABLE=
1038  DISABLE=  DISABLE=
1039  MAKEFILE=  # MAKEFILE=
1040  MAKEDEPEND=  # MAKEDEPEND=
1041  PDEPEND=  PDEPEND=
1042  DUMPSTATE=t  DUMPSTATE=t
1043  PDEFAULT=  PDEFAULT=
1044  OPTFILE=  OPTFILE=
1045  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1046  FFLAGS=  FFLAGS=
1047  FOPTIM=  FOPTIM=
1048    FEXTRAFLAGS=
1049  CFLAGS=  CFLAGS=
1050  KFLAGS1=  KFLAGS1=
1051  KFLAGS2=  KFLAGS2=
1052    #LDADD=
1053  LIBS=  LIBS=
1054  KPPFILES=  KPPFILES=
1055  NOOPTFILES=  NOOPTFILES=
1056  NOOPTFLAGS=  NOOPTFLAGS=
1057    MPI=
1058    MPIPATH=
1059    TS=
1060    PAPIS=
1061    PCLS=
1062    FOOLAD=
1063    PAPI=
1064    PCL=
1065    HPMT=
1066    GSL=
1067    DEVEL=
1068    HAVE_TEST_L=
1069    
1070    # DEFINES checked by test compilation or command-line
1071    HAVE_SYSTEM=
1072    HAVE_FDATE=
1073    FC_NAMEMANGLE=
1074    HAVE_CLOC=
1075    # HAVE_SETRLSTK=
1076    HAVE_STAT=
1077    HAVE_NETCDF=
1078    HAVE_ETIME=
1079    IGNORE_TIME=
1080    
1081  MODS=  MODS=
1082  TOOLSDIR=  TOOLSDIR=
1083  SOURCEDIRS=  SOURCEDIRS=
1084  INCLUDEDIRS=  INCLUDEDIRS=
1085    STANDARDDIRS="USE_THE_DEFAULT"
1086    
1087    G2ARGS=
1088    BASH=
1089  PWD=`pwd`  PWD=`pwd`
1090  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1091  THISHOSTNAME=`hostname`  test "x$AWK" = x   &&  AWK=awk
1092    EMBED_SRC=
1093    THISHOST=`hostname`
1094  THISCWD=`pwd`  THISCWD=`pwd`
1095  THISDATE=`date`  THISDATE=`date`
1096    THISUSER=`echo $USER`
1097    THISVER=
1098  MACHINE=`uname -a`  MACHINE=`uname -a`
1099  EXECUTABLE=  EXECUTABLE=
1100  EXEHOOK=  EXEHOOK=
1101  EXEDIR=  EXEDIR=
1102    PACKAGES_CONF=
1103    IEEE=
1104    if test "x$MITGCM_IEEE" != x ; then
1105        IEEE=$MITGCM_IEEE
1106    fi
1107    FS=
1108    FS90=
1109    
1110    AUTODIFF_PKG_USED=f
1111    AD_OPTFILE=
1112    TAF=
1113    AD_TAF_FLAGS=
1114    FTL_TAF_FLAGS=
1115    SVD_TAF_FLAGS=
1116    TAF_EXTRA=
1117    TAMC=
1118    AD_TAMC_FLAGS=
1119    FTL_TAF_FLAGS=
1120    SVD_TAMC_FLAGS=
1121    TAMC_EXTRA=
1122    
1123    
1124  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1125  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1126  gm_s2="FC IEEE MPI JAM DUMPSTATE"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"
1127    
1128  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1129  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1130  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1131  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1132  gm_s6="EXECUTABLE EXEHOOK EXEDIR"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1133    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
1134    
1135  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6"  #  The following are all related to adjoint/tangent-linear stuff
1136    gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1137    gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1138    gm_s12="TAF_EXTRA TAMC_EXTRA"
1139    
1140    gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
1141    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1142    
1143    cat <<EOF
1144    
1145    GENMAKE :
1146    
1147    A program for GENerating MAKEfiles for the MITgcm project.  For a
1148    quick list of options, use "genmake -h" or for more detail see:
1149    
1150      http://mitgcm.org/devel_HOWTO/
1151    
1152    EOF
1153    
 echo  
1154  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1155  gm_local="./gm_local"  gm_local="genmake_local"
1156  echo -n "  getting local config information:  "  printf "  getting local config information:  "
1157  if test -e $gm_local ; then  if test -f $gm_local ; then
1158      echo "using $gm_local"      echo "using $gm_local"
1159      source $gm_local      . $gm_local
1160      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
1161      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
1162  else  else
1163      echo "none found"      echo "none found"
1164  fi  fi
1165    
1166  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1167  #OPTIONS=  #OPTIONS=
1168  #n=0  #n=0
1169  #for i ; do  #for i ; do
# Line 361  fi Line 1174  fi
1174  #   n=$(( $n + 1 ))  #   n=$(( $n + 1 ))
1175  #done  #done
1176  #parse_options  #parse_options
   
1177  ac_prev=  ac_prev=
1178  for ac_option ; do  for ac_option in "$@" ; do
1179    
1180        G2ARGS="$G2ARGS \"$ac_option\""
1181    
1182      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1183      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 386  for ac_option ; do Line 1200  for ac_option ; do
1200          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1201              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1202                    
1203            -adoptfile | --adoptfile | -adof | --adof)
1204                ac_prev=AD_OPTFILE ;;
1205            -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1206                AD_OPTFILE=$ac_optarg ;;
1207            
1208          -pdepend | --pdepend)          -pdepend | --pdepend)
1209              ac_prev=PDEPEND ;;              ac_prev=PDEPEND ;;
1210          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
# Line 401  for ac_option ; do Line 1220  for ac_option ; do
1220          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1221              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1222                    
1223            -bash | --bash)
1224                ac_prev=BASH ;;
1225            -bash=* | --bash=*)
1226                BASH=$ac_optarg ;;
1227            
1228            -makedepend | --makedepend | -md | --md)
1229                ac_prev=MAKEDEPEND ;;
1230            -makedepend=* | --makedepend=* | -md=* | --md=*)
1231                MAKEDEPEND=$ac_optarg ;;
1232            
1233          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
1234              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1235          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
1236              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1237                    
1238          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1239              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
1240          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
1241              PLATFORM=$ac_optarg ;;              echo
1242                usage
1243                ;;
1244                    
1245          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1246              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 431  for ac_option ; do Line 1262  for ac_option ; do
1262          -enable=* | --enable=*)          -enable=* | --enable=*)
1263              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1264                    
1265          -noopt | --noopt)          -standarddirs | --standarddirs)
1266              ac_prev=NOOPT ;;              ac_prev=STANDARDDIRS ;;
1267          -noopt=* | --noopt=*)          -standarddirs=* | --standarddirs=*)
1268              NOOPT=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
1269            
1270  #           -cpp | --cpp)  #           -cpp | --cpp)
1271  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1272  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1273  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1274                        
1275            -cc | --cc)
1276                ac_prev=CC ;;
1277            -cc=* | --cc=*)
1278                CC=$ac_optarg ;;
1279            
1280          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1281              ac_prev=FC ;;              ac_prev=FC ;;
1282          -fc=* | --fc=*)          -fc=* | --fc=*)
1283              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1284                    
1285            -fs | --fs)
1286                ac_prev=FS ;;
1287            -fs=* | --fs=*)
1288                FS=$ac_optarg ;;
1289            
1290            -fs90 | --fs90)
1291                ac_prev=FS90 ;;
1292            -fs90=* | --fs90=*)
1293                FS90=$ac_optarg ;;
1294            
1295          -ieee | --ieee)          -ieee | --ieee)
1296              IEEE=1 ;;              IEEE=true ;;
1297          -noieee | --noieee)          -noieee | --noieee)
1298              IEEE=0 ;;              IEEE= ;;
1299            
1300            -ts | --ts)
1301                TS=true ;;
1302            -papis | --papis)
1303                PAPIS=true ;;
1304            -pcls | --pcls)
1305                PCLS=true ;;
1306            -foolad | --foolad)
1307                FOOLAD=true ;;
1308            -papi | --papi)
1309                PAPI=true ;;
1310            -pcl | --pcl)
1311                PCL=true ;;
1312            -hpmt | --hpmt)
1313                HPMT=true ;;
1314    
1315            -gsl | --gsl)
1316                GSL=true ;;
1317    
1318            -devel | --devel)
1319                DEVEL=true ;;
1320    
1321          -mpi | --mpi)          -mpi | --mpi)
1322              MPI=1 ;;              MPI=true ;;
1323          -nompi | --nompi)          -mpi=* | --mpi=*)
1324              MPI=0 ;;              MPIPATH=$ac_optarg
1325                        MPI=true ;;
1326          -jam | --jam)          
1327              JAM=1 ;;  #       -jam | --jam)
1328          -nojam | --nojam)  #           JAM=1 ;;
1329              JAM=0 ;;  #       -nojam | --nojam)
1330    #           JAM=0 ;;
1331                    
1332          -ds | --ds)          -ds | --ds)
1333              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1334                    
1335            -taf_extra | --taf_extra)
1336                ac_prev=TAF_EXTRA ;;
1337            -taf_extra=* | --taf_extra=*)
1338                TAF_EXTRA=$ac_optarg ;;
1339    
1340            -tamc_extra | --tamc_extra)
1341                ac_prev=TAMC_EXTRA ;;
1342            -tamc_extra=* | --tamc_extra=*)
1343                TAMC_EXTRA=$ac_optarg ;;
1344            
1345            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1346                IGNORE_TIME="-DIGNORE_TIME" ;;
1347    
1348            -es | --es | -embed-source | --embed-source)
1349                EMBED_SRC=t ;;
1350    
1351          -*)          -*)
1352              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1353              usage              usage
# Line 478  for ac_option ; do Line 1362  for ac_option ; do
1362            
1363  done  done
1364    
1365    
1366    if test -f ./.genmakerc ; then
1367        echo
1368        echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1369        echo "  file.  This file format is no longer supported.  For directions on"
1370        echo "  how to setup and use the new \"genmake2\" script, please see:"
1371        echo "    http://mitgcm.org/devel_HOWTO/"
1372        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1373        echo "WARNING: ignore \"./.genmakerc\" and continue."
1374        echo
1375    fi
1376    
1377    #  Find the MITgcm ${ROOTDIR}
1378  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1379      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1380        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1381          ROOTDIR=".."          ROOTDIR=".."
1382      else      else
1383          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1384              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1385                  ROOTDIR=$d                  ROOTDIR=$d
1386                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1387                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1388                  break                  break
1389              fi              fi
# Line 503  if test ! -d ${ROOTDIR} ; then Line 1401  if test ! -d ${ROOTDIR} ; then
1401      exit 1      exit 1
1402  fi  fi
1403    
1404    #  Find the MITgcm ${THISVER}
1405    if test -f "${ROOTDIR}/doc/tag-index" ; then
1406        THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`
1407    fi
1408    
1409    if test "x$MAKEFILE" = x ; then
1410        MAKEFILE="Makefile"
1411    fi
1412    
1413  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1414  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1415      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 516  fi Line 1423  fi
1423  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
1424      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1425          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
1426          source "$OPTFILE"          . "$OPTFILE"
1427          RETVAL=$?          RETVAL=$?
1428          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1429              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1430              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1431              exit 1              exit 1
1432          fi          fi
1433          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" != xf ; then
1434              cp -f $OPTFILE "gm_optfile"              cp -f $OPTFILE "genmake_optfile"
1435          fi          fi
1436      else      else
1437          echo "Error: can't read OPTFILE=\"$OPTFILE\""          echo "Error: can't read OPTFILE=\"$OPTFILE\""
# Line 532  if test "x$OPTFILE" != xNONE ; then Line 1439  if test "x$OPTFILE" != xNONE ; then
1439      fi      fi
1440  fi  fi
1441    
1442  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  echo "  getting AD_OPTFILE information:  "
1443  #  and abort!  if test "x${AD_OPTFILE}" = x ; then
1444        if test "x$MITGCM_AD_OF" = x ; then
1445            AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1446        else
1447            AD_OPTFILE=$MITGCM_AD_OF
1448        fi
1449    fi
1450    if test "x${AD_OPTFILE}" != xNONE ; then
1451        if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1452            echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1453            . "$AD_OPTFILE"
1454            RETVAL=$?
1455            if test "x$RETVAL" != x0 ; then
1456                printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1457                echo "--please check that variable syntax is bash-compatible"
1458                exit 1
1459            fi
1460            if test "x$DUMPSTATE" != xf ; then
1461                cp -f $AD_OPTFILE "genmake_ad_optfile"
1462            fi
1463        else
1464            echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
1465            exit 1
1466        fi
1467    fi
1468    
1469    #====================================================================
1470    #  Set default values if not set by the optfile
1471    #
1472    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1473    #  either set defaults or complain and abort!
1474    if test ! "x$BASH" = x ; then
1475        # add a trailing space so that it works within the Makefile syntax (see below)
1476        BASH="$BASH "
1477    fi
1478  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1479      cat <<EOF 1>&2      cat <<EOF 1>&2
1480    
1481  Error: no Fortran compiler: please specify using one of the following:  Error: no Fortran compiler: please specify using one of the following:
1482    1) within the options file ("FC=...") as specified by "-of=OPTFILE"    1) within the options file ("FC=...") as specified by "-of=OPTFILE"
1483    2) the "-fc=XXX" command-line option    2) the "-fc=XXX" command-line option
1484    3) the "./gm_local" file    3) the "./genmake_local" file
1485    EOF
1486        exit 1
1487    fi
1488    if test "x$CC" = x ; then
1489        CC=cc
1490    #     cat <<EOF 1>&2
1491    # Error: no C compiler: please specify using one of the following:
1492    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1493    #   2) the "-cc=XXX" command-line option
1494    #   3) the "./genmake_local" file
1495    # EOF
1496    #     exit 1
1497    fi
1498    if test "x$LINK" = x ; then
1499        LINK=$FC
1500    fi
1501    if test "x$MAKE" = x ; then
1502        MAKE="make"
1503    fi
1504    if test "x$CPP" = x ; then
1505        CPP=cpp
1506    fi
1507    #EH3 === UGLY ===
1508    #  The following is an ugly little hack to check for $CPP in /lib/ and
1509    #  it should eventually be replaced with a more general function that
1510    #  searches a combo of the user's path and a list of "usual suspects"
1511    #  to find the correct location for binaries such as $CPP.
1512    for i in " " "/lib/" ; do
1513        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1514    done
1515    #EH3 === UGLY ===
1516    echo "#define A a" | $CPP > test_cpp 2>&1
1517    RETVAL=$?
1518    if test "x$RETVAL" != x0 ; then
1519        cat <<EOF 1>&2
1520    
1521    Error: C pre-processor "$CPP" failed the test case: please specify using:
1522    
1523      1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1524      2) the "./genmake_local" file
1525      3) with the CPP environment variable
1526    
1527  EOF  EOF
1528      exit 1      exit 1
1529    else
1530        rm -f test_cpp
1531    fi
1532    look_for_makedepend
1533    if test "x$LN" = x ; then
1534        LN="ln -s"
1535    fi
1536    echo "test" > genmake_test_ln
1537    $LN genmake_test_ln genmake_tlink
1538    RETVAL=$?
1539    if test "x$RETVAL" != x0 ; then
1540        cat <<EOF 1>&2
1541    
1542    Error: The command "ln -s" failed -- please specify a working soft-link
1543      command in the optfile.
1544    
1545    EOF
1546        exit 1
1547    fi
1548    test -L genmake_tlink > /dev/null 2>&1
1549    RETVAL=$?
1550    if test "x$RETVAL" = x0 ; then
1551        HAVE_TEST_L=t
1552    fi
1553    rm -f genmake_test_ln genmake_tlink
1554    
1555    #  Check for broken *.F/*.f handling and fix if possible
1556    check_for_broken_Ff
1557    
1558    if test ! "x$MPI" = x ; then
1559          echo "  Turning on MPI cpp macros"
1560          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1561    fi
1562    
1563    if test ! "x$TS" = x ; then
1564          echo "  Turning on timing per timestep"
1565          if test ! "x$FOOLAD" = x ; then
1566                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1567          else
1568                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1569          fi
1570          PACKAGES="$PACKAGES showflops"
1571    fi
1572    if test ! "x$PAPIS" = x ; then
1573          echo "  Turning on PAPI flop summary per timestep"
1574          echo "  Please make sure PAPIINC, PAPILIB are defined"
1575          if test ! "x$FOOLAD" = x ; then
1576                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1577          else
1578                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1579          fi
1580          INCLUDES="$INCLUDES $PAPIINC"
1581          LIBS="$LIBS $PAPILIB"
1582          PACKAGES="$PACKAGES showflops"
1583    fi
1584    if test ! "x$PCLS" = x ; then
1585          echo "  Turning on PCL counter summary per timestep"
1586          echo "  Please make sure PCLINC, PCLLIB are defined"
1587          if test ! "x$FOOLAD" = x ; then
1588                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1589          else
1590                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1591          fi
1592          INCLUDES="$INCLUDES $PCLINC"
1593          LIBS="$LIBS $PCLLIB"
1594          PACKAGES="$PACKAGES showflops"
1595    fi
1596    if test ! "x$PAPI" = x ; then
1597          if test ! "x$PAPIS" = x ; then
1598              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1599              echo "  Sticking with PAPI flop summary per timestep!"
1600          else
1601              echo "  Turning on performance analysis with PAPI"
1602              echo "  Please make sure PAPIINC, PAPILIB are defined"
1603              DEFINES="$DEFINES -DUSE_PAPI"
1604              INCLUDES="$INCLUDES $PAPIINC"
1605              LIBS="$LIBS $PAPILIB"
1606          fi
1607    fi
1608    if test ! "x$PCL" = x ; then
1609          if test ! "x$PCLS" = x ; then
1610              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1611              echo "  Sticking with PCL flop summary per timestep!"
1612          else
1613              echo "  Turning on performance analysis with PCL"
1614              echo "  Please make sure PCLINC, PCLLIB are defined"
1615              DEFINES="$DEFINES -DUSE_PCL"
1616              INCLUDES="$INCLUDES $PCLINC"
1617              LIBS="$LIBS $PCLLIB"
1618          fi
1619    fi
1620    if test ! "x$HPMT" = x ; then
1621          if test ! "x$PAPI" = x ; then
1622              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1623              echo "  Sticking with PAPI!"
1624          else if test ! "x$PCL" = x ; then
1625              echo "  PCL and the HPM Toolkit cannot co-exist!"
1626              echo "  Sticking with PCL!"
1627          else
1628              echo "  Turning on performance analysis with the HPM Toolkit"
1629              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1630              DEFINES="$DEFINES -DUSE_LIBHPM"
1631              INCLUDES="$INCLUDES $HPMTINC"
1632              LIBS="$LIBS $HPMTLIB"
1633          fi
1634          fi
1635    fi
1636    if test ! "x$GSL" = x ; then
1637          echo "  Turning on use of GSL to control floating point calculations"
1638          echo "  Please make sure GSLINC, GSLLIB are defined"
1639          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1640          INCLUDES="$INCLUDES $GSLINC"
1641          LIBS="$LIBS $GSLLIB"
1642    fi
1643    
1644    printf "\n===  Checking system libraries  ===\n"
1645    printf "  Do we have the system() command using $FC...  "
1646    cat > genmake_tcomp.$FS <<EOF
1647          program hello
1648          call system('echo hi')
1649          end
1650    EOF
1651    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1652    RETVAL=$?
1653    if test "x$RETVAL" = x0 ; then
1654        HAVE_SYSTEM=t
1655        DEFINES="$DEFINES -DHAVE_SYSTEM"
1656        echo "yes"
1657    else
1658        HAVE_SYSTEM=
1659        echo "no"
1660    fi
1661    rm -f genmake_tcomp*
1662    
1663    printf "  Do we have the fdate() command using $FC...  "
1664    cat > genmake_tcomp.$FS <<EOF
1665          program hello
1666          CHARACTER*(128) string
1667          string = ' '
1668          call fdate( string )
1669          print *, string
1670          end
1671    EOF
1672    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1673    RETVAL=$?
1674    if test "x$RETVAL" = x0 ; then
1675        HAVE_FDATE=t
1676        DEFINES="$DEFINES -DHAVE_FDATE"
1677        echo "yes"
1678    else
1679        HAVE_FDATE=
1680        echo "no"
1681    fi
1682    rm -f genmake_tcomp*
1683    
1684    printf "  Do we have the etime() command using $FC...  "
1685    cat > genmake_tcomp.$FS <<EOF
1686          program hello
1687          REAL*4 ACTUAL, TARRAY(2)
1688          EXTERNAL ETIME
1689          REAL*4 ETIME
1690          actual = etime( tarray )
1691          print *, tarray
1692          end
1693    EOF
1694    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1695    RETVAL=$?
1696    if test "x$RETVAL" = x0 ; then
1697        HAVE_ETIME=t
1698        DEFINES="$DEFINES -DHAVE_ETIME"
1699        echo "yes"
1700    else
1701        HAVE_ETIME=
1702        echo "no"
1703  fi  fi
1704  if test "x$LINK" = x ; then  rm -f genmake_tcomp*
1705      LINK=$FC  
1706    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1707    check_HAVE_CLOC
1708    if test "x$HAVE_CLOC" != x ; then
1709        echo "yes"
1710    else
1711        echo "no"
1712        if test "x$EMBED_SRC" = xt ; then
1713            echo "    WARNING: you requested file embedding but it has"
1714            echo "      been disabled since C code cannot be called"
1715            EMBED_SRC=
1716        fi
1717  fi  fi
1718  if test "x$CPP" = x ; then  rm -f genmake_t*
1719      CPP="cpp"  
1720    printf "  Can we unlimit the stack size using $FC...  "
1721    check_HAVE_SETRLSTK
1722    if test "x$HAVE_SETRLSTK" = xt ; then
1723        echo "yes"
1724    else
1725        echo "no"
1726  fi  fi
1727  echo "#define A a" | cpp > test_cpp 2>&1  rm -f genmake_t*
 RETVAL=$?  
 if test "x$RETVAL" != x0 ; then  
     cat <<EOF 1>&2  
1728    
1729  Error: C pre-processor "$CPP" failed the test case: please specify using:  printf "  Can we register a signal handler using $FC...  "
1730    check_HAVE_SIGREG
1731    if test "x$HAVE_SIGREG" = xt ; then
1732        echo "yes"
1733    else
1734        echo "no"
1735    fi
1736    rm -f genmake_t*
1737    
1738    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"  printf "  Can we use stat() through C calls...  "
1739    2) the "./gm_local" file  check_HAVE_STAT
1740    if test "x$HAVE_STAT" != x ; then
1741        echo "yes"
1742    else
1743        echo "no"
1744    fi
1745    rm -f genmake_t*
1746    
1747  EOF  printf "  Can we create NetCDF-enabled binaries...  "
1748      exit 1  check_netcdf_libs
1749    if test "x$HAVE_NETCDF" != x ; then
1750        echo "yes"
1751  else  else
1752      rm -f test_cpp      echo "no"
1753  fi  fi
1754  if test "x$MAKEDEPEND" = x ; then  DEFINES="$DEFINES $IGNORE_TIME"
1755      MAKEDEPEND=makedepend  
1756    if test "x$EMBED_SRC" = xt ; then
1757        build_embed_encode
1758    fi
1759    if test "x$EMBED_SRC" = xt ; then
1760        ENABLE="$ENABLE embed_files"
1761  fi  fi
1762    
1763    
1764  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1765  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1766  for d in $MODS ; do  for d in $MODS ; do
1767      if test ! -d $d ; then      if test ! -d $d ; then
1768          echo          echo
1769          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1770          exit 1          exit 1
1771      else      else
1772          echo -n " $d"          printf " $d"
1773          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1774          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1775      fi      fi
1776  done  done
1777  echo  echo
1778    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1779  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1780      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1781  fi  fi
1782    
1783  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1784      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1785        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1786          EXEDIR=../exe          EXEDIR=../exe
1787      else      else
1788          EXEDIR=.          EXEDIR=.
# Line 607  if test "x${TOOLSDIR}" = x ; then Line 1797  if test "x${TOOLSDIR}" = x ; then
1797      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1798  fi  fi
1799  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1800      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1801      exit 1      exit 1
1802  fi  fi
1803  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1804      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1805        RETVAL=$?
1806        if test "x${RETVAL}" = x0 ; then
1807            S64='$(TOOLSDIR)/set64bitConst.sh'
1808        else
1809            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1810            RETVAL=$?
1811            if test "x${RETVAL}" = x0 ; then
1812                S64='$(TOOLSDIR)/set64bitConst.csh'
1813            else
1814                cat <<EOF
1815    
1816    ERROR: neither of the two default scripts:
1817    
1818        ${TOOLSDIR}/set64bitConst.sh
1819        ${TOOLSDIR}/set64bitConst.csh
1820    
1821      are working so please check paths or specify (with \$S64) a
1822      working version of this script.
1823    
1824    EOF
1825                exit 1
1826            fi
1827        fi
1828  fi  fi
1829    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1830    
1831  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1832    
# Line 621  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 1835  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1835  #  they appear as regular source code  #  they appear as regular source code
1836  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1837      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1838      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
1839      RETVAL=$?      RETVAL=$?
1840      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1841          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1842      else      else
1843          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1844          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1845          exit 1          exit 1
1846      fi      fi
1847  fi  fi
1848    
1849    #same for pkg/exch2 and pkg/regrid
1850    for pdir in exch2 regrid ; do
1851        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1852            echo "  Making source files in pkg/${pdir} from templates"
1853            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1
1854            RETVAL=$?
1855            if test "x${RETVAL}" = x0 ; then
1856                rm -f make_${pdir}.errors
1857            else
1858                echo "Error: problem encountered while building source files in pkg/${pdir}:"
1859                cat make_${pdir}.errors 1>&2
1860                exit 1
1861            fi
1862        fi
1863    done
1864    
1865  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1866  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1867      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 651  echo "  getting package dependency info Line 1881  echo "  getting package dependency info
1881  #  Strip the comments and then convert the dependency file into  #  Strip the comments and then convert the dependency file into
1882  #  two arrays: PNAME, DNAME  #  two arrays: PNAME, DNAME
1883  cat $PDEPEND | sed -e 's/#.*$//g' \  cat $PDEPEND | sed -e 's/#.*$//g' \
1884      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
1885      > ./.pd_tmp      > ./.pd_tmp
1886  RETVAL=$?  RETVAL=$?
1887  if test ! "x${RETVAL}" = x0 ; then  if test ! "x${RETVAL}" = x0 ; then
1888      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
1889      exit 1      exit 1
1890  fi  fi
1891  source ./.pd_tmp  . ./.pd_tmp
1892  rm -f ./.pd_tmp  rm -f ./.pd_tmp
1893    
1894  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1895  #  file should eventually be added so that, for convenience, one can  #  file should eventually be added so that, for convenience, one can
1896  #  specify groups of packages using names like "ocean" and "atmosphere".  #  specify groups of packages using names like "ocean" and "atmosphere".
1897  echo  -n "  checking default package list:  "  echo "  checking default package list:  "
1898  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1899      for i in "." $MODS ; do      for i in "." $MODS ; do
1900          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
# Line 677  if test "x${PDEFAULT}" = x ; then Line 1907  if test "x${PDEFAULT}" = x ; then
1907      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1908  fi  fi
1909  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1910      echo "default packages file disabled"      echo "    default packages file disabled"
1911  else  else
1912      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1913          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1914      else      else
1915          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1916          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1917          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1918          RETVAL=$?          RETVAL=$?
1919          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1920              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1921              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1922              exit 1              exit 1
1923          fi          fi
# Line 696  else Line 1925  else
1925              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1926          done          done
1927          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1928          expand_pkg_groups          RET=1
1929            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1930          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1931      fi      fi
1932  fi  fi
1933    
1934  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1935    for i in $PACKAGES ; do
1936        echo $i >> ./.tmp_pack
1937    done
1938    for i in `grep  "-" ./.tmp_pack` ; do
1939        j=`echo $i | sed 's/[-]//'`
1940        DISABLE="$DISABLE $j"
1941    done
1942  pack=  pack=
1943  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1944      addit="t"      addit="t"
# Line 718  PACKAGES="$pack" Line 1955  PACKAGES="$pack"
1955  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1956  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1957  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1958    # Test if each explicitly referenced package exists
1959  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1960      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1961        if test ! -d "$ROOTDIR/pkg/$j" ; then
1962          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1963          exit 1          exit 1
1964      fi      fi
1965      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1966  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1967  PACKAGES=  PACKAGES=
1968  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1969      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1970  done  done
1971    rm -f ./.tmp_pack
1972  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1973    
1974    #  Check for package MNC: if NetCDF is available, then build the MNC
1975    #  template files ; otherwise, delete mnc from the list of packages.
1976    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1977    RETVAL=$?
1978    if test "x$RETVAL" = x0 ; then
1979        if test "x$HAVE_NETCDF" != xt ; then
1980            cat <<EOF
1981    
1982    *********************************************************************
1983    WARNING: the "mnc" package was enabled but tests failed to compile
1984      NetCDF applications.  Please check that:
1985    
1986      1) NetCDF is correctly installed for this compiler and
1987      2) the LIBS variable (within the "optfile") specifies the correct
1988           NetCDF library to link against.
1989    
1990      Due to this failure, the "mnc" package is now DISABLED.
1991    *********************************************************************
1992    
1993    EOF
1994            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
1995            DISABLE="$DISABLE mnc"
1996        else
1997            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
1998            RETVAL=$?
1999            if test "x${RETVAL}" = x0 ; then
2000                rm -f make_mnc.errors
2001            else
2002                echo "Error: problem encountered while building source files in pkg/mnc:"
2003                cat make_mnc.errors 1>&2
2004                exit 1
2005            fi
2006        fi
2007    fi
2008    
2009    #  Check for package PROFILES: if NetCDF is not available,
2010    #  then delete profiles from the list of available packages.
2011    echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1
2012    RETVAL=$?
2013    if test "x$RETVAL" = x0 ; then
2014        if test "x$HAVE_NETCDF" != xt ; then
2015            cat <<EOF
2016    
2017    *********************************************************************
2018    WARNING: the "profiles" package was enabled but tests failed to
2019      compile NetCDF applications.  Please check that:
2020    
2021      1) NetCDF is correctly installed for this compiler and
2022      2) the LIBS variable (within the "optfile") specifies the correct
2023           NetCDF library to link against.
2024    
2025      Due to this failure, the "profiles" package is now DISABLED.
2026    *********************************************************************
2027    
2028    EOF
2029            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2030            DISABLE="$DISABLE profiles"
2031        fi
2032    fi
2033    
2034  echo "  applying package dependency rules"  echo "  applying package dependency rules"
2035  ck=  ck=
2036  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
2037      i=0      i=0
2038      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2039      rtot=$nname      rtot=$nname
2040      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2041    
2042          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2043          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 773  while test "x$ck" != xtt ; do Line 2071  while test "x$ck" != xtt ; do
2071    
2072          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2073          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2074                #echo "   " $pname ": need to add :" $dname
2075              in_dis="f"              in_dis="f"
2076              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2077                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 797  while test "x$ck" != xtt ; do Line 2096  while test "x$ck" != xtt ; do
2096              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2097              exit 1              exit 1
2098          fi          fi
2099          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2100            #i=$(( $i + 1 ))
2101      done      done
2102      ck=$ck"t"      ck=$ck"t"
2103  done  done
# Line 807  for i in $PACKAGES ; do Line 2107  for i in $PACKAGES ; do
2107      if test -d $adr ; then      if test -d $adr ; then
2108          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
2109          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
2110            if test "x$i" = xautodiff ; then
2111                AUTODIFF_PKG_USED=t
2112            fi
2113      else      else
2114          echo "Error: the directory \"$adr\" for package $i doesn't exist"          echo "Error: the directory \"$adr\" for package $i doesn't exist"
2115          exit 1          exit 1
2116      fi      fi
2117  done  done
2118    
 #  This is compatible with the old genmake.  The "DISABLE_*" flags  
 #  need to be replaced by the "ALLOW_*" flags set below.  
 #  
 # echo -n "  Setting package-specific CPP flags:  "  
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
2119  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2120  PACKAGES_DOT_H=PACKAGES.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
 cat <<EOF >$PACKAGES_DOT_H".tmp"  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
   
 C  Packages disabled by genmake:  
 EOF  
2121  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2122  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2123  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2124  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2125  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2126  all_pack=  all_pack=
2127    DISABLED_PACKAGES=
2128  for n in $names ; do  for n in $names ; do
2129      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2130          has_pack="f"          has_pack="f"
# Line 862  for n in $names ; do Line 2135  for n in $names ; do
2135              fi              fi
2136          done          done
2137          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2138              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2139              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
 #           DEFINES="$DEFINES -U$undef"  
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
2140          fi          fi
2141      fi      fi
2142  done  done
2143  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2144  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2145      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2146      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2147  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2148    
2149  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2150      case $i in      case $i in
2151          aim_v23)          aim_v23)
2152              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2153              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
2154              ;;              ;;
2155      esac      esac
2156  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2157    
2158  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
2159    
2160  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
2161  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2162  STANDARDDIRS=${STANDARDDIRS:-"eesupp model"}  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2163  for d in $STANDARDDIRS ; do      STANDARDDIRS="eesupp model"
2164      adr="$ROOTDIR/$d/src"  fi
2165      if test ! -d $adr ; then  if test "x$STANDARDDIRS" != x ; then
2166          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""      for d in $STANDARDDIRS ; do
2167          echo "  is correct and that you correctly specified the STANDARDDIRS option"          adr="$ROOTDIR/$d/src"
2168          exit 1          if test ! -d $adr ; then
2169      else              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2170          SOURCEDIRS="$SOURCEDIRS $adr"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2171      fi              exit 1
2172      adr="$ROOTDIR/$d/inc"          else
2173      if test ! -d $adr ; then              SOURCEDIRS="$SOURCEDIRS $adr"
2174          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          fi
2175          echo "  is correct and that you correctly specified the STANDARDDIRS option"          adr="$ROOTDIR/$d/inc"
2176          exit 1          if test ! -d $adr ; then
2177      else              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2178          INCLUDEDIRS="$INCLUDEDIRS $adr"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2179      fi              exit 1
2180  done          else
2181                INCLUDEDIRS="$INCLUDEDIRS $adr"
2182            fi
2183        done
2184    fi
2185    
2186  echo " Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2187  echo " of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
2188  CPP_OPTIONS=  CPP_OPTIONS=
2189    CPP_EEOPTIONS=
2190  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
2191    names=`ls -1 "$ROOTDIR/pkg"`
2192  for i in $spaths ; do  for i in $spaths ; do
2193      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
2194      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
2195          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2196          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2197          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2198            for n in $names ; do
2199                test_for_package_in_cpp_options $CPP_OPTIONS $n
2200            done
2201        fi
2202        try="$i/CPP_EEOPTIONS.h"
2203        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2204            echo "    found CPP_EEOPTIONS=\"$try\""
2205            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2206    #**** not yet enabled ****
2207    #        test_for_mpi_in_cpp_eeoptions $try
2208    #**** not yet enabled ****
2209            CPP_EEOPTIONS="$try"
2210      fi      fi
2211  done  done
2212  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
2213      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2214      exit 1      exit 1
2215  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
2216    
2217    #  Here, we build the list of files to be "run through" the adjoint
2218    #  compiler.
2219    if test -f ./adSrcFiles.tmp ; then
2220        rm -f ./adSrcFiles.tmp
2221    fi
2222    echo "  Creating the list of files for the adjoint compiler."
2223    for i in $SOURCEDIRS ; do
2224        list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2225        for j in $list_files ; do
2226            cat $i/$j >> adSrcFiles.tmp
2227        done
2228    done
2229    if test ! "x"$FS = "x.f" ; then
2230        cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2231        mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2232    fi
2233    
2234  echo  echo
2235  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2236  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2237  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2238      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2239          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2240      fi      fi
2241  done  done
2242    
2243    if test ! "x$DIVA" = x ; then
2244        echo "  Creating the pseudo-MPI include directory"
2245        INCLUDES="-I./mpi_headers $INCLUDES"
2246        rm -rf ./mpi_headers
2247        mkdir -p ./mpi_headers
2248    
2249        if test "x$MPIINCLUDEDIR" = x ; then
2250            if test "x$MPIHOME" = x ; then
2251                MPIHOME='/usr'
2252            fi
2253            MPIINCLUDEDIR='$MPIHOME/include'
2254        fi
2255        
2256        if test -r $MPIINCLUDEDIR/mpif.h ; then
2257            for i in $MPI_HEADER_FILES; do
2258                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2259            done
2260    
2261            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2262        else
2263            echo " We cannot create a copy of mpif.h!"
2264    #       exit -1
2265        fi
2266    fi
2267    
2268  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2269  rm -rf .links.tmp  rm -rf .links.tmp
2270  mkdir .links.tmp  mkdir .links.tmp
2271    touch .links.tmp/foo
2272    if test ! -r ".links.tmp/foo" ; then
2273        echo
2274        echo "ERROR : something is wrong with your directory permissions or"
2275        echo "   your user file-creation mask (\"umask\") since creating a"
2276        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2277        echo "   not working.  Please try setting your umask to something"
2278        echo "   sane such as:"
2279        echo
2280        echo "      umask 0002"
2281        echo
2282        echo "   and please verify that you have the proper permissions for"
2283        echo "   creating sub-directories and then reading files created"
2284        echo "   within them."
2285        echo
2286        exit 1
2287    fi
2288    rm -f .links.tmp/foo
2289    
2290    if test "x$OPENAD" != x ; then
2291        OAD_DONT_COMPILE="/dev/null"
2292        OAD_DONT_TRANSFORM="/dev/null"
2293        OAD_KEEP_ORIGINAL="/dev/null"
2294        OAD_CB2M_FILES="/dev/null"
2295        echo "  looking for dontCompile file:  "
2296        for i in "." $MODS ; do
2297            if test -r $i"/dontCompile" ; then
2298                OAD_DONT_COMPILE=$i"/dontCompile"
2299                echo "     found $OAD_DONT_COMPILE"
2300                break
2301            fi
2302        done
2303        echo "  looking for dontTransform file:  "
2304        for i in "." $MODS ; do
2305            if test -r $i"/dontTransform" ; then
2306                OAD_DONT_TRANSFORM=$i"/dontTransform"
2307                echo "     found $OAD_DONT_TRANSFORM"
2308                break
2309            fi
2310        done
2311        echo "  looking for keepOriginal file:  "
2312        for i in "." $MODS ; do
2313            if test -r $i"/keepOriginal" ; then
2314                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2315                echo "     found $OAD_KEEP_ORIGINAL"
2316                break
2317            fi
2318        done
2319        echo "  looking for cb2mFiles:  "
2320        for i in "." $MODS ; do
2321            if test -r $i"/cb2mFiles" ; then
2322                OAD_CB2M_FILES=$i"/cb2mFiles"
2323                echo "     found $OAD_CB2M_FILES"
2324                break
2325            fi
2326        done
2327        echo "   OpenAD exceptions:  "
2328    fi
2329    
2330  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2331  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2332  echo -n 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2333  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2334  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2335  echo -n 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2336    printf 'H_SRC_FILES = '   > hsrclist.tmp
2337    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2338  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2339  for d in $alldirs ; do  for d in $alldirs ; do
2340      deplist=      deplist=
2341      sfiles=`( cd $d; echo *.[h,c,F] )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2342      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2343        if test "x$OPENAD" != x ; then
2344            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2345        fi
2346      for sf in $sfiles ; do      for sf in $sfiles ; do
2347          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2348              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2349                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  ignore_f=f
2350                  touch .links.tmp/$sf                  case $d/$sf in
2351                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2352                  case $extn in                          ignore_f=t
2353                      F)                          ;;
2354                          echo    " \\"  >> srclist.inc                    ./AD_CONFIG.h)
2355                          echo -n " $sf" >> srclist.inc                          ignore_f=t
2356                            ;;
2357                      ./FC_NAMEMANGLE.h)
2358                            ignore_f=t
2359                            ;;
2360                      ./BUILD_INFO.h)
2361                            ignore_f=t
2362                            ;;
2363                      ./EMBEDDED_FILES.h)
2364                            ignore_f=t
2365                            ;;
2366                      *)
2367                            #  For the local directory *ONLY*,
2368                            #  ignore all soft-links
2369                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2370                                ignore_f=t
2371                            else
2372                                touch .links.tmp/$sf
2373                                deplist="$deplist $sf"
2374                            fi
2375                            ;;
2376                    esac
2377                    if test "x$ignore_f" = xf ; then
2378                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2379                        case $extn in
2380                          F)
2381                            echo    " \\"  >> F77srclist.tmp
2382                            printf " $sf" >> F77srclist.tmp
2383                            if test "x$OPENAD" != x ; then
2384                                basename=${sf%%.F}
2385                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2386                                if test -z "$isAD" ; then
2387                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2388                                    if test -z "$toBeIgnored" ; then
2389                                        echo    " \\"  >> nonADF77srclist.tmp
2390                                        printf " $sf" >> nonADF77srclist.tmp
2391                                    else
2392                                        echo "    not to be compiled   :  $sf"
2393                                    fi
2394                                else # file is initially listed as an AD file we want to exclude it
2395                                     # or we want to retain the untransformed version
2396                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2397                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2398                                    if test -n "$notToBeTransformed"; then
2399                                        echo "    not to be transformed:  $sf"
2400                                    fi
2401                                    if test -n "$untransformedVersionToBeKept" ; then
2402                                        echo "    original to be kept  :  $sf"
2403                                    fi    
2404                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2405                                        echo    " \\"  >> nonADF77srclist.tmp
2406                                        printf " $sf" >> nonADF77srclist.tmp
2407                                    fi
2408                                fi
2409                            fi
2410                          ;;                          ;;
2411                      F90)                      F90)
2412                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2413                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2414                          ;;                          ;;
2415                      c)                      c)
2416                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2417                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2418                          ;;                          ;;
2419                      h)                      h)
2420                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2421                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2422                          ;;                          ;;
2423                  esac                      flow)
2424                            echo    " \\"  >> ad_flow_files.tmp
2425                            printf " $sf" >> ad_flow_files.tmp
2426                            ;;
2427                       esac
2428                    fi
2429              fi              fi
2430          fi          fi
2431      done      done
2432      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2433          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2434            echo "" >> srclinks.tmp
2435          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2436          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2437          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2438    # This may happen when make thinks that a header file has to be "remade"
2439    # because a module it depends on has changed.  In this case we do nothing.
2440            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2441          fi
2442      fi      fi
2443  done  done
2444  rm -rf .links.tmp  rm -rf .links.tmp
2445  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2446  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2447  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2448  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2449    echo "" >> hsrclist.tmp
2450    echo "" >> ad_flow_files.tmp
2451    
2452  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2453      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
2454  fi  fi
2455  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1041  echo "#    $MACHINE" >> $MAKEFILE Line 2458  echo "#    $MACHINE" >> $MAKEFILE
2458  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2459  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2460  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2461  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
2462  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2463  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2464    
2465    EXE_AD=$EXECUTABLE"_ad"
2466    EXE_FTL=$EXECUTABLE"_ftl"
2467    EXE_SVD=$EXECUTABLE"_svd"
2468    
2469  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2470    #
2471    # OPTFILE="$OPTFILE"
2472  #  #
2473  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2474  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 1072  EXEDIR      = ${EXEDIR} Line 2496  EXEDIR      = ${EXEDIR}
2496  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2497  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2498    
2499    #eh3  new defines for the adjoint work
2500    AUTODIFF    = ${ROOTDIR}/pkg/autodiff
2501    EXE_AD      = ${EXE_AD}
2502    EXE_FTL     = ${EXE_FTL}
2503    EXE_SVD     = ${EXE_SVD}
2504    
2505    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2506    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2507    
2508    # These files are created by Makefile
2509    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2510  EOF  EOF
2511    
2512  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2513        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2514    else
2515        echo "EMBEDDED_FILES = " >>$MAKEFILE
2516    fi
2517    
2518    #  Note: figure out some way to add Hyades JAM libraries here
2519  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2520  # Unix ln (link)  # Unix ln (link)
2521  LN = ${LN}  LN = ${LN}
# Line 1089  KPP = ${KPP} Line 2529  KPP = ${KPP}
2529  FC = ${FC}  FC = ${FC}
2530  # Fortran compiler  # Fortran compiler
2531  F90C = ${F90C}  F90C = ${F90C}
2532    # C compiler
2533    CC = ${CC}
2534  # Link editor  # Link editor
2535  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2536    
2537  # Defines for CPP  # Defines for CPP
2538  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1100  INCLUDES = ${INCLUDES} Line 2542  INCLUDES = ${INCLUDES}
2542  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2543  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2544  # Optim./debug for FC  # Optim./debug for FC
2545  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2546  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2547  # Optim./debug for FC  # Optim./debug for FC
2548  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2549  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2550    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2551  # Flags for CC  # Flags for CC
2552  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2553  # Files that should not be optimized  # Files that should not be optimized
2554  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2555  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2556  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2557  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2558  # Name of the Mekfile  # Name of the Mekfile
2559  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2560    
2561  EOF  EOF
2562    
2563  cat srclist.inc    >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2564  cat csrclist.inc   >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2565  cat f90srclist.inc >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2566  cat hlist.inc      >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2567  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2568  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  cat ad_flow_files.tmp   >> $MAKEFILE
2569  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2570    rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2571  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
2572    echo >> $MAKEFILE
2573    
2574    # add definitions for preprocessed sources
2575    # and note that not all systems allow case sensitive extensions
2576    # hence the $FS and $FS90 here.
2577    # for fixed format f90 files we use ff90 or FF90 resp
2578    # but these are not expected to be the original source files
2579    
2580    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2581    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2582    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2583    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2584    echo >> $MAKEFILE
2585    echo '.SUFFIXES:' >> $MAKEFILE
2586    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2587    
2588  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2589    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
2590  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2591  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2592            @echo Creating \$@ ...
2593          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2594  depend:  depend:
2595          @make links          @make links
2596          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2597          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2598            -rm -f makedepend.out
2599    
2600    lib: libmitgcmuv.a
2601    
2602  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  libmitgcmuv.a: \$(OBJFILES)
2603            ar rcv libmitgcmuv.a \$(OBJFILES)
2604            ar d   libmitgcmuv.a main.o
2605    
2606  small_f: \$(F77FILES) \$(F90FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2607    
2608    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2609    
2610  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2611          @printf 'running ... '          @printf 'running ... '
2612          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2613    
2614  clean:  clean:
2615          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2616            -rm -rf *.o
2617            -rm -rf *.$FS *.flowdir
2618            -rm -rf *.f$FS90 *_mod.h *_mod.F90 *.FF90 *.mod-whirl ad_input*
2619            -rm -rf temp.sed reslice.dat
2620  Clean:  Clean:
2621          @make clean          @make clean
2622          @make cleanlinks          @make cleanlinks
2623          -rm -f Makefile.bak gm_state gm_optfile make.log          -rm -f \$(SPECIAL_FILES)
2624            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log f90mkdepend.log *.bak
2625            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2626  CLEAN:  CLEAN:
2627          @make Clean          @make Clean
2628          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2629          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2630          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2631          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2632            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2633            -rm -rf mnc_test_*
2634    
2635    #eh3 Makefile: makefile
2636  makefile:  makefile:
2637          ${0} $@          $THIS_SCRIPT $G2ARGS
2638  cleanlinks:  cleanlinks:
2639          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2640    
2641  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are created by make
2642  .F.f:  ${PACKAGES_DOT_H}:
2643            @echo Creating \$@ ...
2644            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2645    AD_CONFIG.h:
2646            @echo Creating \$@ ...
2647            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2648    FC_NAMEMANGLE.h:
2649            @echo Creating \$@ ...
2650            echo "$FC_NAMEMANGLE" > \$@
2651    
2652    BUILD_INFO.h:
2653            @echo Creating \$@ ...
2654    EOF
2655    
2656    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2657    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2658    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2659    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2660    
2661    if test "x$EMBED_SRC" = xt ; then
2662        cat >>$MAKEFILE <<EOF
2663    
2664    decode_files.o : EMBEDDED_FILES.h
2665    
2666    ##  \$(F77_PP_SRC_FILES)
2667    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2668            @echo Creating \$@ ...
2669            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2670            -rm -f all_fF.tar.gz
2671            -gzip all_fF.tar
2672    
2673    EMBEDDED_FILES.h : all_fF.tar.gz
2674            @echo Creating \$@ ...
2675            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2676    
2677    EOF
2678    fi
2679    
2680    cat >>$MAKEFILE <<EOF
2681    
2682    # The normal chain of rules is (  .F - .$FS - .o  )
2683    
2684    ## This nullifies any default implicit rules concerning these two file types:
2685    %.o : %.F
2686    
2687    .F.$FS:
2688          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2689  .f.o:  .$FS.o:
2690          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2691  .F90.f90:  .F90.$FS90:
2692          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2693  .f90.o:  .FF90.f$FS90:
2694            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2695    .$FS90.o:
2696          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2697    .f$FS90.o:
2698            cp \$< \$(basename  \$<).f90
2699            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2700  .c.o:  .c.o:
2701          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2702    .flow.flowdir:
2703            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2704    
2705  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2706  .F.p:  .F.p:
2707          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2708  .p.f:  .p.$FS:
2709          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2710    
2711  EOF  EOF
2712    
2713    #=========================================
2714    #===  Automatic Differentiation Rules  ===
2715    #===  for TAMC/TAF  ======================
2716    
2717    if test "x$OPENAD" == x ; then
2718    
2719    cat >>$MAKEFILE <<EOF
2720    
2721    TAMC           = ${TAMC}
2722    TAF            = ${TAF}
2723    
2724    TAF_EXTRA      = ${TAF_EXTRA}
2725    TAMC_EXTRA     = ${TAMC_EXTRA}
2726    
2727    EOF
2728    
2729    ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
2730    ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
2731    ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2732    for i in $ad_vars ; do
2733        name=$i
2734        t1="t2=\$"`echo "$i"`
2735        eval $t1
2736        printf "%-20s = " $name >> $MAKEFILE
2737        echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2738    done
2739    
2740    echo "  Add the source list for AD code generation"
2741    echo >> $MAKEFILE
2742    printf "AD_FILES = " >> $MAKEFILE
2743    AD_FILES=`cat ad_files`
2744    for i in $AD_FILES ; do
2745        echo    " \\" >> $MAKEFILE
2746        printf " $i" >> $MAKEFILE
2747    done
2748    echo >> $MAKEFILE
2749    rm -f ad_files
2750    
2751    cat >>$MAKEFILE <<EOF
2752    
2753    # ... AD ...
2754    adall: \$(EXE_AD)
2755    adtaf: ad_taf_output.$FS
2756    adtamc: ad_tamc_output.$FS
2757    
2758    ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2759            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2760            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2761            -rm -f ad_config.template
2762            @make \$(F77_PP_SRC_FILES)
2763            @make \$(FLOFILES)
2764            cat \$(FLOFILES) \$(AD_FILES) > ad_input_code.$FS
2765    
2766    ad_taf_output.$FS: ad_input_code.$FS
2767            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2768            ls -l ad_input_code_ad.$FS
2769            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2770    
2771    adtafonly:
2772            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2773            ls -l ad_input_code_ad.$FS
2774            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2775    
2776    \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2777            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2778    
2779    ad_tamc_output.$FS: ad_input_code.$FS
2780            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2781            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2782    
2783    ad_tamc: ad_tamc_output.o \$(OBJFILES)
2784            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2785    
2786    adonlyfwd:
2787            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2788    
2789    adtrick:
2790            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2791    
2792    # ... FTL ...
2793    ftlall: ftl_taf
2794    ftltaf: ftl_taf_output.$FS
2795    ftltamc: ftl_tamc_output.$FS
2796    
2797    ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2798            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2799            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2800            -rm -f ftl_config.template
2801            @make \$(F77_PP_SRC_FILES)
2802            @make \$(AD_FLOW_FILES)
2803            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2804    
2805    ftl_taf_output.$FS: ftl_input_code.$FS
2806            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2807            ls -l ftl_input_code_ftl.$FS
2808            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2809    
2810    ftltafonly:
2811            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2812            ls -l ftl_input_code_ftl.$FS
2813            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2814    
2815    ftl_taf: ftl_taf_output.o \$(OBJFILES)
2816            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2817    
2818    ftl_tamc_output.$FS: ftl_input_code.$FS
2819            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2820            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2821    
2822    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2823            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2824    
2825    
2826    # ... SVD ...
2827    svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2828            @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2829            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2830    svdall: svd_touch svd_taf
2831    
2832    svd_taf: \$(OBJFILES)
2833            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2834    
2835            @echo "--->>> Only COMPILE svd code! <<<---"
2836            @echo "--->>> Assumes you previously <<<---"
2837            @echo "--->>> did make svdtaf        <<<---"
2838    
2839    svd_touch:
2840            @echo "--->>> Only COMPILE svd code! <<<---"
2841            @echo "--->>> Assumes you previously <<<---"
2842            @echo "--->>> did make svdtaf        <<<---"
2843            touch ad_taf_output.$FS ftl_taf_output.$FS
2844            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2845            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2846            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2847            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2848            -rm -f ftl_config.template
2849    
2850    EOF
2851    
2852    fi
2853    
2854    #===  for OpenAD  ========================
2855    
2856    if test "x$OPENAD" != x ; then
2857    
2858    # ============ begin OpenAD specific section ==============
2859    
2860    cat >>$MAKEFILE <<EOF
2861    
2862    # all the source files linked from the various locations:
2863    ALL_LINKED_FILES= \
2864    \$(F77_SRC_FILES) \
2865    \$(C_SRC_FILES) \
2866    \$(H_SRC_FILES) \
2867    \$(F90_SRC_FILES) \
2868    \$(SPECIAL_FILES)
2869    
2870    ifndef OPENADROOT
2871      \$(error "Error:  environment variable OPENADROOT not defined!")
2872    endif
2873    
2874    ifndef XAIFSCHEMAROOT
2875      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2876    endif
2877    
2878    ifndef XAIFBOOSTERROOT
2879      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2880    endif
2881    
2882    EOF
2883    
2884    echo "  Add the source list for common block to module conversion "
2885    echo >> $MAKEFILE
2886    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2887    for i in `cat ${OAD_CB2M_FILES}` ; do
2888      echo    " \\" >> $MAKEFILE
2889      printf " $i" >> $MAKEFILE
2890    done
2891    echo >> $MAKEFILE
2892    
2893    echo "  Add the source list for AD code generation"
2894    echo >> $MAKEFILE
2895    printf "AD_FILES = " >> $MAKEFILE
2896    for i in `cat ${OAD_CB2M_FILES}` ; do
2897      echo    " \\" >> $MAKEFILE
2898      printf " ${i}_mod.f$FS90" >> $MAKEFILE
2899    done
2900    AD_FILES=`cat adSrcFiles.tmp`
2901    for i in $AD_FILES ; do
2902      basename=${i%%.f}
2903      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
2904      if test -z "$toBeIgnored" ; then
2905        echo    " \\" >> $MAKEFILE
2906        printf " $i" >> $MAKEFILE
2907      fi
2908    done
2909    echo >> $MAKEFILE
2910    rm -f adSrcFiles.tmp
2911    
2912    cat >>$MAKEFILE <<EOF
2913    
2914    adAll: \$(EXE_AD)
2915    .PHONY: adAll
2916    
2917    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
2918    
2919    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
2920    
2921    .PHONY: adDepend
2922    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
2923            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2924            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2925            -rm -f makedepend.out
2926    
2927    OPENAD_SUPPORT_F90_SRC_FILES = \
2928    w2f__types.F90 \
2929    OAD_active.F90 \
2930    OAD_cp.F90 \
2931    OAD_rev.F90 \
2932    OAD_tape.F90        
2933    
2934    OPENAD_SUPPORT_C_SRC_FILES = \
2935    iaddr.c \
2936    timeRatio.c
2937    
2938    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
2939            cat \$^ > \$@
2940    
2941    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.canon.xb.x2w.w2f.rs.pp.f$FS90
2942            cat \$^ > \$@
2943    
2944    f95_test.out: f95_test_mods.f90 f95_test.f90
2945            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
2946            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
2947    
2948    AD_OBJ_FILES=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) all_mods.xb.x2w.w2f.pp.o  ad_input_code.w2f.canon.xb.x2w.w2f.rs.pp.o \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
2949    
2950    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(AD_OBJ_FILES)
2951            @echo Creating \$@ ...
2952            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES) \$(LIBS)
2953    
2954    # makefile debug rule
2955    openad: ad_input_code.w2f.canon.xb.x2w.w2f.rs.pp.f$FS90
2956    .PHONY: openad
2957    
2958    # create the module files
2959    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
2960            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
2961    
2962    # create the header files
2963    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
2964            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
2965    
2966    # change everybody else to use the new module files:
2967    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
2968            ../OAD_support/cb2mUseModules.bash $< ${MPI}
2969    
2970    # makefile debug rule
2971    small_f: \$(CB2M_F90_PP_SRC_FILES)
2972    .PHONY: small_f
2973    
2974    ad_output.txt: \$(EXE_AD)
2975            @printf 'linking data files ... '
2976            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
2977            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
2978            @printf 'running ... '
2979            @./\$(EXE_AD) > \$@
2980    
2981    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
2982    ad_input_code.f$FS90: ../OAD_support/maxMinDefs.f \$(CB2M_AD_FILES)
2983            cat \$^ > \$@
2984    
2985    # strip all comments and blanks to reduce
2986    # the file size in order to reduce perl's memory requirements
2987    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
2988            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
2989    
2990    # mfef90 preprocessing
2991    # expand statement functions
2992    # expose mfef90 specific substring handling
2993    # add the w2f__types module
2994    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
2995            ./mfef90 -r8 -z -F -N132 \$<
2996            mv \$<.B \$(basename \$<).B
2997            ./whirl2f -openad \$(basename \$<).B
2998            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
2999    
3000    # canonicalizer
3001    ad_input_code_sf.w2f.canon.f$FS90: ad_input_code_sf.w2f.f$FS90 canon.v1.py
3002            python canon.v1.py --r8 \$< > \$@
3003    
3004    # F -> WHIRL
3005    # note that the canonicalized version cuts off at col 72
3006    # doing this also for string constants which is ok as long
3007    # as we are in fixed mode and cut of exactly there.
3008    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3009    # characters respectively.
3010    ad_input_code_sf.w2f.canon.B: ad_input_code_sf.w2f.canon.f$FS90 mfef90
3011            ./mfef90 -r8 -z -F \$<
3012            mv \$<.B \$@
3013    
3014    # WHIRL -> XAIF
3015    ad_input_code_sf.w2f.canon.xaif : ad_input_code_sf.w2f.canon.B whirl2xaif
3016            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3017    
3018    # XAIF -> XAIF'
3019    ad_input_code_sf.w2f.canon.xb.xaif : ad_input_code_sf.w2f.canon.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd openad_adm
3020            ./openad_adm -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3021    
3022    # XAIF' -> WHIRL'
3023    ad_input_code_sf.w2f.canon.xb.x2w.B : ad_input_code_sf.w2f.canon.xb.xaif xaif2whirl
3024            ./xaif2whirl --debug 1 --structured ad_input_code_sf.w2f.canon.B \$<
3025    
3026    # WHIRL' -> F'
3027    ad_input_code_sf.w2f.canon.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.canon.xb.x2w.B whirl2f whirl2f_be
3028            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3029    
3030    # undo slice hiding
3031    # insert template directives
3032    ad_input_code_sf.w2f.canon.xb.x2w.w2f.rs.f$FS90: ad_input_code_sf.w2f.canon.xb.x2w.w2f.f$FS90 reslicer.py ../OAD_support/insertTemplateDir.bash
3033            python reslicer.py \$< > \$<.1
3034            ../OAD_support/insertTemplateDir.bash \$<.1  \$@
3035            rm \$<.1
3036    
3037    # postprocess F'
3038    ad_input_code_sf.w2f.canon.xb.x2w.w2f.rs.pp.f$FS90: ad_input_code_sf.w2f.canon.xb.x2w.w2f.rs.f$FS90 multi-pp.pl ../OAD_support/ad_inline.f \$(wildcard ../OAD_support/ad_template.*.f)
3039            perl multi-pp.pl -inline=../OAD_support/ad_inline.f \$<
3040            # the postprocessor still gets the name wrong
3041            cat \$<.pp | sed 's/RETURN//' > \$@
3042    
3043    # extract all transformed modules
3044    all_mods.xb.x2w.w2f.pp.f$FS90: ad_input_code_sf.w2f.canon.xb.x2w.w2f.rs.pp.f$FS90
3045            cat \$< | sed -n '/MODULE /,/END MODULE/p' > \$@
3046    
3047    # remove the transformed globals module from the
3048    # transformed ad_input_code file
3049    # and remove for now the duplicate variables
3050    # and fix 2 data statements
3051    ad_input_code.w2f.canon.xb.x2w.w2f.rs.pp.f$FS90: ad_input_code_sf.w2f.canon.xb.x2w.w2f.rs.pp.f$FS90
3052            cat \$< | sed '/MODULE /,/END MODULE/d' | sed '/^      INTEGER(w2f__i4) DOLOOP_UB/d' > \$@
3053    
3054    # setup some links
3055    %.xsd:
3056            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3057    
3058    mfef90:
3059            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3060    
3061    # link the support files:
3062    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3063            \$(LN) ../OAD_support/\$@ .
3064    
3065    whirl2xaif xaif2whirl:
3066            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3067    
3068    %.pl:
3069            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3070    
3071    %.py:
3072            \$(LN) \${OPENADROOT}/OpenADFortTk/tools/canonicalize/\$@ .
3073    
3074    whirl2f whirl2f_be:
3075            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3076    
3077    openad_adm:
3078            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/test/t \$@
3079    
3080    # ============ end OpenAD specific section ==============
3081    
3082    EOF
3083    
3084    fi
3085    
3086    #=========================================
3087    
3088  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3089      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3090  fi  fi
# Line 1197  for i in $KPPFILES ; do Line 3096  for i in $KPPFILES ; do
3096      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3097          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3098      fi      fi
3099      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3100  done  done
3101    
3102  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1207  for i in $NOOPTFILES ; do Line 3106  for i in $NOOPTFILES ; do
3106      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3107          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3108      fi      fi
3109      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3110      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3111  done  done
3112    
# Line 1220  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3119  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3119    
3120  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3121    
3122    # Create special header files
3123    $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3124    if test ! -f $PACKAGES_DOT_H ; then
3125        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3126    else
3127        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
3128        RETVAL=$?
3129        if test "x$RETVAL" = x0 ; then
3130            rm -f $PACKAGES_DOT_H".tmp"
3131        else
3132            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
3133            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3134        fi
3135    fi
3136    if test ! -f AD_CONFIG.h ; then
3137        $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
3138    fi
3139    
3140    
3141  #  Write the "state" for future records  #  Write the "state" for future records
3142  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
3143      echo -n "" > gm_state      printf "" > genmake_state
3144      for i in $gm_state ; do      for i in $gm_state ; do
3145          t1="t2=\$$i"          t1="t2=\$$i"
3146          eval $t1          eval $t1
3147          echo "$i='$t2'" >> gm_state          echo "$i='$t2'" >> genmake_state
3148      done      done
3149  fi  fi

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